Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108400 | XP_003623278.1 | 88.636 | 220 | 22 | 2 | 1 | 217 | 1 | 220 | 6.28e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108400 | G7KRF4 | 88.636 | 220 | 22 | 2 | 1 | 217 | 1 | 220 | 3.00e-135 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa1108400 | 0.815479 | 9.050894e-52 | -8.615850e-47 |
| Msa0735140 | Msa1108400 | 0.800157 | 1.643894e-48 | -8.615850e-47 |
| Msa0777070 | Msa1108400 | 0.819271 | 1.267559e-52 | -8.615850e-47 |
| Msa1024350 | Msa1108400 | 0.885285 | 9.276252e-72 | -8.615850e-47 |
| Msa1108400 | Msa1109890 | 0.819880 | 9.204090e-53 | -8.615850e-47 |
| Msa1108400 | Msa1323030 | 0.819419 | 1.172896e-52 | -8.615850e-47 |
| Msa0933590 | Msa1108400 | 0.804331 | 2.274291e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108400 | MtrunA17_Chr7g0242161 | 88.636 | 220 | 22 | 2 | 1 | 217 | 1 | 220 | 5.78e-139 | 387 |
| Msa1108400 | MtrunA17_Chr7g0242191 | 56.281 | 199 | 80 | 3 | 22 | 217 | 26 | 220 | 2.51e-67 | 206 |
| Msa1108400 | MtrunA17_Chr7g0242171 | 55.455 | 110 | 38 | 4 | 1 | 102 | 1 | 107 | 3.25e-28 | 102 |
| Msa1108400 | MtrunA17_Chr3g0108171 | 28.105 | 153 | 110 | 0 | 63 | 215 | 1813 | 1965 | 5.95e-15 | 73.2 |
| Msa1108400 | MtrunA17_Chr2g0304131 | 23.529 | 153 | 117 | 0 | 63 | 215 | 161 | 313 | 2.91e-12 | 64.7 |
| Msa1108400 | MtrunA17_Chr3g0107261 | 24.183 | 153 | 116 | 0 | 63 | 215 | 245 | 397 | 3.06e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGTACCAATAATTGTTTC+TGG | 0.174680 | 7_3:-51254503 | None:intergenic |
| ATGCGACTCTAAATATTAAA+AGG | 0.195339 | 7_3:-51256770 | None:intergenic |
| TAATAGGAAGCGGCAAATTA+TGG | 0.259557 | 7_3:+51256724 | Msa1108400:CDS |
| GTGTGTTTCTAACCGTCTTC+TGG | 0.296829 | 7_3:-51254447 | None:intergenic |
| CTATGGGTTACGTTTCTAAT+AGG | 0.324528 | 7_3:+51256708 | Msa1108400:CDS |
| GCTACTAATTTGAAACTTGT+TGG | 0.326817 | 7_3:+51256608 | Msa1108400:CDS |
| TAATGTAGTCATCAAGTCTA+AGG | 0.337618 | 7_3:-51256444 | None:intergenic |
| CAAGCCCCAGAAACAATTAT+TGG | 0.339566 | 7_3:+51254497 | Msa1108400:CDS |
| CTCGATGTTATTAATATGTA+TGG | 0.342114 | 7_3:+51256488 | Msa1108400:CDS |
| ACCCATAGCATCTTTCTCAT+TGG | 0.387905 | 7_3:-51256693 | None:intergenic |
| TGCGACTCTAAATATTAAAA+GGG | 0.393156 | 7_3:-51256769 | None:intergenic |
| CTGAGGAGTCGCGCATCCTT+AGG | 0.402078 | 7_3:-51256302 | None:intergenic |
| TTTGAAACTTGTTGGAGAGT+TGG | 0.425030 | 7_3:+51256616 | Msa1108400:CDS |
| ACGTACCAATAATTGTTTCT+GGG | 0.432537 | 7_3:-51254502 | None:intergenic |
| CGCATCCTTAGGTGGAAAAT+CGG | 0.437870 | 7_3:-51256291 | None:intergenic |
| TTCCAATGAGAAAGATGCTA+TGG | 0.475705 | 7_3:+51256691 | Msa1108400:CDS |
| GAAACTTGTTGGAGAGTTGG+AGG | 0.476211 | 7_3:+51256619 | Msa1108400:CDS |
| AGGTGAATGGCTTGATGACT+TGG | 0.498559 | 7_3:+51256517 | Msa1108400:CDS |
| ACTTGTTGGAGAGTTGGAGG+AGG | 0.522944 | 7_3:+51256622 | Msa1108400:CDS |
| ATTAATATGTATGGCTTCAG+AGG | 0.525794 | 7_3:+51256497 | Msa1108400:CDS |
| AGAACATTACGCCGAGGTGC+AGG | 0.528899 | 7_3:-51256251 | None:intergenic |
| TCGCAAGAGCTTGAGGAAGT+TGG | 0.534058 | 7_3:-51256411 | None:intergenic |
| AGCTCCACGTCTTATGTCAA+GGG | 0.547099 | 7_3:-51256375 | None:intergenic |
| CGTACCAATAATTGTTTCTG+GGG | 0.556685 | 7_3:-51254501 | None:intergenic |
| AAGCTCCACGTCTTATGTCA+AGG | 0.560627 | 7_3:-51256376 | None:intergenic |
| TAAGGATGCGCGACTCCTCA+GGG | 0.564280 | 7_3:+51256304 | Msa1108400:CDS |
| TTCTTTGGCGATATCAAGAG+TGG | 0.567082 | 7_3:-51256558 | None:intergenic |
| TCTTTACAGGTCCTGCACCT+CGG | 0.572942 | 7_3:+51256240 | Msa1108400:intron |
| GTTACGTTTCTAATAGGAAG+CGG | 0.584262 | 7_3:+51256714 | Msa1108400:CDS |
| TTAAAATCACATGTTGCTGA+AGG | 0.586212 | 7_3:+51256464 | Msa1108400:CDS |
| ATGTTCATCTCGACCATCGG+TGG | 0.593884 | 7_3:-51254405 | None:intergenic |
| ATGATGTTCATCTCGACCAT+CGG | 0.597004 | 7_3:-51254408 | None:intergenic |
| TCCAATGAGAAAGATGCTAT+GGG | 0.598675 | 7_3:+51256692 | Msa1108400:CDS |
| TCTTGATATCGCCAAAGAAG+AGG | 0.598911 | 7_3:+51256562 | Msa1108400:CDS |
| TTGGCGATATCAAGAGTGGA+GGG | 0.601865 | 7_3:-51256554 | None:intergenic |
| AGTGTGATCGCAAGAGCTTG+AGG | 0.610597 | 7_3:-51256418 | None:intergenic |
| TTTGGCGATATCAAGAGTGG+AGG | 0.621011 | 7_3:-51256555 | None:intergenic |
| TGTATGGCTTCAGAGGTGAA+TGG | 0.635609 | 7_3:+51256504 | Msa1108400:CDS |
| GCGACTCTAAATATTAAAAG+GGG | 0.640303 | 7_3:-51256768 | None:intergenic |
| TGTTCATCTCGACCATCGGT+GGG | 0.646572 | 7_3:-51254404 | None:intergenic |
| CATCCCCTTGACATAAGACG+TGG | 0.651438 | 7_3:+51256371 | Msa1108400:CDS |
| AAATCGGCAACAACAGAGCG+TGG | 0.663909 | 7_3:-51256275 | None:intergenic |
| GCTCCACGTCTTATGTCAAG+GGG | 0.665557 | 7_3:-51256374 | None:intergenic |
| CACAACGAGCTTCAGCGCAG+AGG | 0.671568 | 7_3:+51254467 | Msa1108400:CDS |
| ACAGTAGAAGAACCAGAAGA+CGG | 0.678706 | 7_3:+51254435 | Msa1108400:CDS |
| CGTGGTAGAACATTACGCCG+AGG | 0.728823 | 7_3:-51256257 | None:intergenic |
| GACGAGCATAAAATTCCCTG+AGG | 0.748122 | 7_3:-51256319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAAACATAAAAATAAA+AGG | + | chr7_3:51255740-51255759 | Msa1108400:intron | 10.0% |
| !! | TGAAAAAACATAAAAATAAA+AGG | + | chr7_3:51255740-51255759 | Msa1108400:intron | 10.0% |
| !! | TATTAAGCTTATCAAAATAT+TGG | - | chr7_3:51254667-51254686 | None:intergenic | 15.0% |
| !!! | TTAATTACTTCTTTTTTTCA+TGG | - | chr7_3:51254917-51254936 | None:intergenic | 15.0% |
| !!! | TTTTGAAAATTTGTAACAAA+TGG | - | chr7_3:51255014-51255033 | None:intergenic | 15.0% |
| !! | TTTGTATGATAGTAAAAAAT+TGG | - | chr7_3:51255190-51255209 | None:intergenic | 15.0% |
| !!! | TAGATTTTGAAAAAGTTATT+GGG | + | chr7_3:51255265-51255284 | Msa1108400:intron | 15.0% |
| !!! | ATGTTTTTTCAGATTATTTA+GGG | - | chr7_3:51255731-51255750 | None:intergenic | 15.0% |
| !!! | TATGTTTTTTCAGATTATTT+AGG | - | chr7_3:51255732-51255751 | None:intergenic | 15.0% |
| !! | AAAAACATAAAAATAAAAGG+AGG | + | chr7_3:51255743-51255762 | Msa1108400:intron | 15.0% |
| !! | ACAATAATAATAAGTATTTG+TGG | + | chr7_3:51256075-51256094 | Msa1108400:intron | 15.0% |
| !! | TATTAAGCTTATCAAAATAT+TGG | - | chr7_3:51254667-51254686 | None:intergenic | 15.0% |
| !!! | TTAATTACTTCTTTTTTTCA+TGG | - | chr7_3:51254917-51254936 | None:intergenic | 15.0% |
| !!! | TTTTGAAAATTTGTAACAAA+TGG | - | chr7_3:51255014-51255033 | None:intergenic | 15.0% |
| !! | TTTGTATGATAGTAAAAAAT+TGG | - | chr7_3:51255190-51255209 | None:intergenic | 15.0% |
| !!! | TAGATTTTGAAAAAGTTATT+GGG | + | chr7_3:51255265-51255284 | Msa1108400:intron | 15.0% |
| !!! | ATGTTTTTTCAGATTATTTA+GGG | - | chr7_3:51255731-51255750 | None:intergenic | 15.0% |
| !!! | TATGTTTTTTCAGATTATTT+AGG | - | chr7_3:51255732-51255751 | None:intergenic | 15.0% |
| !! | AAAAACATAAAAATAAAAGG+AGG | + | chr7_3:51255743-51255762 | Msa1108400:intron | 15.0% |
| !! | ACAATAATAATAAGTATTTG+TGG | + | chr7_3:51256075-51256094 | Msa1108400:intron | 15.0% |
| !! | CATAAGTATAATAATATGCA+AGG | + | chr7_3:51254601-51254620 | Msa1108400:intron | 20.0% |
| !! | TATAATAATATGCAAGGTTT+GGG | + | chr7_3:51254607-51254626 | Msa1108400:intron | 20.0% |
| !! | TTGTACTTATAAACAATTGT+TGG | + | chr7_3:51254723-51254742 | Msa1108400:intron | 20.0% |
| !! | AATTGTTAAAAAGTGAGATT+CGG | - | chr7_3:51254824-51254843 | None:intergenic | 20.0% |
| !! | CAAAATCGAATATTGAATAT+AGG | - | chr7_3:51254867-51254886 | None:intergenic | 20.0% |
| !!! | TATTCAATATTCGATTTTGT+TGG | + | chr7_3:51254868-51254887 | Msa1108400:intron | 20.0% |
| !! | GAAAAAAAGAAGTAATTAAG+AGG | + | chr7_3:51254918-51254937 | Msa1108400:intron | 20.0% |
| !!! | GTAGATTTTGAAAAAGTTAT+TGG | + | chr7_3:51255264-51255283 | Msa1108400:intron | 20.0% |
| !! | CAACTTCTATCATTTAAAAA+AGG | + | chr7_3:51255486-51255505 | Msa1108400:intron | 20.0% |
| !! | TTCTTATTGATCAAAAACAA+TGG | + | chr7_3:51255550-51255569 | Msa1108400:intron | 20.0% |
| !!! | TAATTTAGAGTAATGTTTGA+TGG | + | chr7_3:51255843-51255862 | Msa1108400:intron | 20.0% |
| !!! | AAAAAGTTCCTACTTTTTTT+TGG | + | chr7_3:51255941-51255960 | Msa1108400:intron | 20.0% |
| !! | TTTATTAGCCAAAAAAAAGT+AGG | - | chr7_3:51255952-51255971 | None:intergenic | 20.0% |
| !! | ATTCATTGTTATGCTATATT+TGG | - | chr7_3:51256016-51256035 | None:intergenic | 20.0% |
| !!! | TATTATTGTTATTTGAGCAA+AGG | - | chr7_3:51256064-51256083 | None:intergenic | 20.0% |
| !! | CATAAGTATAATAATATGCA+AGG | + | chr7_3:51254601-51254620 | Msa1108400:intron | 20.0% |
| !! | TATAATAATATGCAAGGTTT+GGG | + | chr7_3:51254607-51254626 | Msa1108400:intron | 20.0% |
| !! | TTGTACTTATAAACAATTGT+TGG | + | chr7_3:51254723-51254742 | Msa1108400:intron | 20.0% |
| !! | AATTGTTAAAAAGTGAGATT+CGG | - | chr7_3:51254824-51254843 | None:intergenic | 20.0% |
| !! | CAAAATCGAATATTGAATAT+AGG | - | chr7_3:51254867-51254886 | None:intergenic | 20.0% |
| !!! | TATTCAATATTCGATTTTGT+TGG | + | chr7_3:51254868-51254887 | Msa1108400:intron | 20.0% |
| !! | GAAAAAAAGAAGTAATTAAG+AGG | + | chr7_3:51254918-51254937 | Msa1108400:intron | 20.0% |
| !!! | GTAGATTTTGAAAAAGTTAT+TGG | + | chr7_3:51255264-51255283 | Msa1108400:intron | 20.0% |
| !! | CAACTTCTATCATTTAAAAA+AGG | + | chr7_3:51255486-51255505 | Msa1108400:intron | 20.0% |
| !! | TTCTTATTGATCAAAAACAA+TGG | + | chr7_3:51255550-51255569 | Msa1108400:intron | 20.0% |
| !!! | TAATTTAGAGTAATGTTTGA+TGG | + | chr7_3:51255843-51255862 | Msa1108400:intron | 20.0% |
| !!! | AAAAAGTTCCTACTTTTTTT+TGG | + | chr7_3:51255941-51255960 | Msa1108400:intron | 20.0% |
| !! | TTTATTAGCCAAAAAAAAGT+AGG | - | chr7_3:51255952-51255971 | None:intergenic | 20.0% |
| !! | ATTCATTGTTATGCTATATT+TGG | - | chr7_3:51256016-51256035 | None:intergenic | 20.0% |
| !!! | TATTATTGTTATTTGAGCAA+AGG | - | chr7_3:51256064-51256083 | None:intergenic | 20.0% |
| ! | TATTATGAGTTTAACTCAGT+TGG | + | chr7_3:51254567-51254586 | Msa1108400:intron | 25.0% |
| ! | GTATAATAATATGCAAGGTT+TGG | + | chr7_3:51254606-51254625 | Msa1108400:intron | 25.0% |
| !!! | TTGGTACGTTTTTTTTTTTG+TGG | - | chr7_3:51254648-51254667 | None:intergenic | 25.0% |
| ! | GAATATAGGAACAAATCAAA+AGG | - | chr7_3:51254853-51254872 | None:intergenic | 25.0% |
| ! | TCATAAAAAACTATAGCGAA+AGG | - | chr7_3:51254944-51254963 | None:intergenic | 25.0% |
| !! | ATTTTGTGAAAAGCTAATAC+AGG | - | chr7_3:51255400-51255419 | None:intergenic | 25.0% |
| ! | AATTCAACAATACTATCTAG+TGG | - | chr7_3:51255806-51255825 | None:intergenic | 25.0% |
| ! | GAAAGTAGTAAACTTCTAAT+AGG | - | chr7_3:51255882-51255901 | None:intergenic | 25.0% |
| ! | GGTTTATAAAATAAAGTGAG+AGG | - | chr7_3:51255995-51256014 | None:intergenic | 25.0% |
| ! | CTCGATGTTATTAATATGTA+TGG | + | chr7_3:51256488-51256507 | Msa1108400:CDS | 25.0% |
| ! | TATTATGAGTTTAACTCAGT+TGG | + | chr7_3:51254567-51254586 | Msa1108400:intron | 25.0% |
| ! | GTATAATAATATGCAAGGTT+TGG | + | chr7_3:51254606-51254625 | Msa1108400:intron | 25.0% |
| !!! | TTGGTACGTTTTTTTTTTTG+TGG | - | chr7_3:51254648-51254667 | None:intergenic | 25.0% |
| ! | GAATATAGGAACAAATCAAA+AGG | - | chr7_3:51254853-51254872 | None:intergenic | 25.0% |
| ! | TCATAAAAAACTATAGCGAA+AGG | - | chr7_3:51254944-51254963 | None:intergenic | 25.0% |
| !! | ATTTTGTGAAAAGCTAATAC+AGG | - | chr7_3:51255400-51255419 | None:intergenic | 25.0% |
| ! | AATTCAACAATACTATCTAG+TGG | - | chr7_3:51255806-51255825 | None:intergenic | 25.0% |
| ! | GAAAGTAGTAAACTTCTAAT+AGG | - | chr7_3:51255882-51255901 | None:intergenic | 25.0% |
| ! | GGTTTATAAAATAAAGTGAG+AGG | - | chr7_3:51255995-51256014 | None:intergenic | 25.0% |
| ! | CTCGATGTTATTAATATGTA+TGG | + | chr7_3:51256488-51256507 | Msa1108400:CDS | 25.0% |
| ! | ACGTACCAATAATTGTTTCT+GGG | - | chr7_3:51254505-51254524 | None:intergenic | 30.0% |
| TACGTACCAATAATTGTTTC+TGG | - | chr7_3:51254506-51254525 | None:intergenic | 30.0% | |
| !!! | GTACGTTTTTTTTTTTGTGG+TGG | - | chr7_3:51254645-51254664 | None:intergenic | 30.0% |
| ! | GGCTTTTCCAGATTTTTTAT+AGG | - | chr7_3:51254896-51254915 | None:intergenic | 30.0% |
| !! | CTAATACAGGTAGTTTGTTT+GGG | - | chr7_3:51255387-51255406 | None:intergenic | 30.0% |
| !! | GTTGTTTTGTGTTTACTTTC+AGG | - | chr7_3:51255470-51255489 | None:intergenic | 30.0% |
| AGAGAGAAAAAGAAAGAGAA+AGG | + | chr7_3:51255573-51255592 | Msa1108400:intron | 30.0% | |
| ! | GGAGGTAATCATTCTTTTTA+TGG | + | chr7_3:51255761-51255780 | Msa1108400:intron | 30.0% |
| GTAAACTTCTAATAGGTAGA+TGG | - | chr7_3:51255875-51255894 | None:intergenic | 30.0% | |
| !! | AGTTGATGTGTTTTCTTTAC+AGG | + | chr7_3:51256227-51256246 | Msa1108400:intron | 30.0% |
| TAATGTAGTCATCAAGTCTA+AGG | - | chr7_3:51256447-51256466 | None:intergenic | 30.0% | |
| TTAAAATCACATGTTGCTGA+AGG | + | chr7_3:51256464-51256483 | Msa1108400:CDS | 30.0% | |
| ATTAATATGTATGGCTTCAG+AGG | + | chr7_3:51256497-51256516 | Msa1108400:CDS | 30.0% | |
| ! | GCTACTAATTTGAAACTTGT+TGG | + | chr7_3:51256608-51256627 | Msa1108400:CDS | 30.0% |
| ! | ACGTACCAATAATTGTTTCT+GGG | - | chr7_3:51254505-51254524 | None:intergenic | 30.0% |
| TACGTACCAATAATTGTTTC+TGG | - | chr7_3:51254506-51254525 | None:intergenic | 30.0% | |
| !!! | GTACGTTTTTTTTTTTGTGG+TGG | - | chr7_3:51254645-51254664 | None:intergenic | 30.0% |
| ! | GGCTTTTCCAGATTTTTTAT+AGG | - | chr7_3:51254896-51254915 | None:intergenic | 30.0% |
| !! | CTAATACAGGTAGTTTGTTT+GGG | - | chr7_3:51255387-51255406 | None:intergenic | 30.0% |
| !! | GTTGTTTTGTGTTTACTTTC+AGG | - | chr7_3:51255470-51255489 | None:intergenic | 30.0% |
| AGAGAGAAAAAGAAAGAGAA+AGG | + | chr7_3:51255573-51255592 | Msa1108400:intron | 30.0% | |
| ! | GGAGGTAATCATTCTTTTTA+TGG | + | chr7_3:51255761-51255780 | Msa1108400:intron | 30.0% |
| GTAAACTTCTAATAGGTAGA+TGG | - | chr7_3:51255875-51255894 | None:intergenic | 30.0% | |
| !! | AGTTGATGTGTTTTCTTTAC+AGG | + | chr7_3:51256227-51256246 | Msa1108400:intron | 30.0% |
| TAATGTAGTCATCAAGTCTA+AGG | - | chr7_3:51256447-51256466 | None:intergenic | 30.0% | |
| TTAAAATCACATGTTGCTGA+AGG | + | chr7_3:51256464-51256483 | Msa1108400:CDS | 30.0% | |
| ATTAATATGTATGGCTTCAG+AGG | + | chr7_3:51256497-51256516 | Msa1108400:CDS | 30.0% | |
| ! | GCTACTAATTTGAAACTTGT+TGG | + | chr7_3:51256608-51256627 | Msa1108400:CDS | 30.0% |
| !! | CGTACCAATAATTGTTTCTG+GGG | - | chr7_3:51254504-51254523 | None:intergenic | 35.0% |
| ! | TGAGTTTAACTCAGTTGGTA+TGG | + | chr7_3:51254572-51254591 | Msa1108400:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCTG+AGG | - | chr7_3:51254639-51254658 | None:intergenic | 35.0% |
| GTTGGCACCTATAAAAAATC+TGG | + | chr7_3:51254886-51254905 | Msa1108400:intron | 35.0% | |
| CCTAAGAACAACTTCTCATT+TGG | - | chr7_3:51255075-51255094 | None:intergenic | 35.0% | |
| CCAAATGAGAAGTTGTTCTT+AGG | + | chr7_3:51255072-51255091 | Msa1108400:intron | 35.0% | |
| !! | GCTAATACAGGTAGTTTGTT+TGG | - | chr7_3:51255388-51255407 | None:intergenic | 35.0% |
| CACAATGTTGTCATCAAAGT+TGG | - | chr7_3:51255522-51255541 | None:intergenic | 35.0% | |
| AACTTCTAATAGGTAGATGG+AGG | - | chr7_3:51255872-51255891 | None:intergenic | 35.0% | |
| !! | TTTGAAACTTGTTGGAGAGT+TGG | + | chr7_3:51256616-51256635 | Msa1108400:CDS | 35.0% |
| TTCCAATGAGAAAGATGCTA+TGG | + | chr7_3:51256691-51256710 | Msa1108400:CDS | 35.0% | |
| TCCAATGAGAAAGATGCTAT+GGG | + | chr7_3:51256692-51256711 | Msa1108400:CDS | 35.0% | |
| ! | CTATGGGTTACGTTTCTAAT+AGG | + | chr7_3:51256708-51256727 | Msa1108400:CDS | 35.0% |
| GTTACGTTTCTAATAGGAAG+CGG | + | chr7_3:51256714-51256733 | Msa1108400:CDS | 35.0% | |
| TAATAGGAAGCGGCAAATTA+TGG | + | chr7_3:51256724-51256743 | Msa1108400:CDS | 35.0% | |
| !! | CGTACCAATAATTGTTTCTG+GGG | - | chr7_3:51254504-51254523 | None:intergenic | 35.0% |
| ! | TGAGTTTAACTCAGTTGGTA+TGG | + | chr7_3:51254572-51254591 | Msa1108400:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCTG+AGG | - | chr7_3:51254639-51254658 | None:intergenic | 35.0% |
| GTTGGCACCTATAAAAAATC+TGG | + | chr7_3:51254886-51254905 | Msa1108400:intron | 35.0% | |
| CCTAAGAACAACTTCTCATT+TGG | - | chr7_3:51255075-51255094 | None:intergenic | 35.0% | |
| CCAAATGAGAAGTTGTTCTT+AGG | + | chr7_3:51255072-51255091 | Msa1108400:intron | 35.0% | |
| !! | GCTAATACAGGTAGTTTGTT+TGG | - | chr7_3:51255388-51255407 | None:intergenic | 35.0% |
| CACAATGTTGTCATCAAAGT+TGG | - | chr7_3:51255522-51255541 | None:intergenic | 35.0% | |
| AACTTCTAATAGGTAGATGG+AGG | - | chr7_3:51255872-51255891 | None:intergenic | 35.0% | |
| !! | TTTGAAACTTGTTGGAGAGT+TGG | + | chr7_3:51256616-51256635 | Msa1108400:CDS | 35.0% |
| TTCCAATGAGAAAGATGCTA+TGG | + | chr7_3:51256691-51256710 | Msa1108400:CDS | 35.0% | |
| TCCAATGAGAAAGATGCTAT+GGG | + | chr7_3:51256692-51256711 | Msa1108400:CDS | 35.0% | |
| ! | CTATGGGTTACGTTTCTAAT+AGG | + | chr7_3:51256708-51256727 | Msa1108400:CDS | 35.0% |
| GTTACGTTTCTAATAGGAAG+CGG | + | chr7_3:51256714-51256733 | Msa1108400:CDS | 35.0% | |
| TAATAGGAAGCGGCAAATTA+TGG | + | chr7_3:51256724-51256743 | Msa1108400:CDS | 35.0% | |
| ATGATGTTCATCTCGACCAT+CGG | - | chr7_3:51254411-51254430 | None:intergenic | 40.0% | |
| ACAGTAGAAGAACCAGAAGA+CGG | + | chr7_3:51254435-51254454 | Msa1108400:CDS | 40.0% | |
| CAAGCCCCAGAAACAATTAT+TGG | + | chr7_3:51254497-51254516 | Msa1108400:CDS | 40.0% | |
| ! | GAATTTTATGCTCGTCATGC+TGG | + | chr7_3:51256326-51256345 | Msa1108400:CDS | 40.0% |
| TTCTTTGGCGATATCAAGAG+TGG | - | chr7_3:51256561-51256580 | None:intergenic | 40.0% | |
| TCTTGATATCGCCAAAGAAG+AGG | + | chr7_3:51256562-51256581 | Msa1108400:CDS | 40.0% | |
| ACCCATAGCATCTTTCTCAT+TGG | - | chr7_3:51256696-51256715 | None:intergenic | 40.0% | |
| ATGATGTTCATCTCGACCAT+CGG | - | chr7_3:51254411-51254430 | None:intergenic | 40.0% | |
| ACAGTAGAAGAACCAGAAGA+CGG | + | chr7_3:51254435-51254454 | Msa1108400:CDS | 40.0% | |
| CAAGCCCCAGAAACAATTAT+TGG | + | chr7_3:51254497-51254516 | Msa1108400:CDS | 40.0% | |
| ! | GAATTTTATGCTCGTCATGC+TGG | + | chr7_3:51256326-51256345 | Msa1108400:CDS | 40.0% |
| TTCTTTGGCGATATCAAGAG+TGG | - | chr7_3:51256561-51256580 | None:intergenic | 40.0% | |
| TCTTGATATCGCCAAAGAAG+AGG | + | chr7_3:51256562-51256581 | Msa1108400:CDS | 40.0% | |
| ACCCATAGCATCTTTCTCAT+TGG | - | chr7_3:51256696-51256715 | None:intergenic | 40.0% | |
| ! | GTGTGTTTCTAACCGTCTTC+TGG | - | chr7_3:51254450-51254469 | None:intergenic | 45.0% |
| !!! | TGTTGCCGATTTTCCACCTA+AGG | + | chr7_3:51256286-51256305 | Msa1108400:CDS | 45.0% |
| CGCATCCTTAGGTGGAAAAT+CGG | - | chr7_3:51256294-51256313 | None:intergenic | 45.0% | |
| GACGAGCATAAAATTCCCTG+AGG | - | chr7_3:51256322-51256341 | None:intergenic | 45.0% | |
| AGCTCCACGTCTTATGTCAA+GGG | - | chr7_3:51256378-51256397 | None:intergenic | 45.0% | |
| AAGCTCCACGTCTTATGTCA+AGG | - | chr7_3:51256379-51256398 | None:intergenic | 45.0% | |
| TGTATGGCTTCAGAGGTGAA+TGG | + | chr7_3:51256504-51256523 | Msa1108400:CDS | 45.0% | |
| ! | AGGTGAATGGCTTGATGACT+TGG | + | chr7_3:51256517-51256536 | Msa1108400:CDS | 45.0% |
| TTGGCGATATCAAGAGTGGA+GGG | - | chr7_3:51256557-51256576 | None:intergenic | 45.0% | |
| TTTGGCGATATCAAGAGTGG+AGG | - | chr7_3:51256558-51256577 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGCACCTCTTCTT+TGG | - | chr7_3:51256576-51256595 | None:intergenic | 45.0% |
| !! | GAAACTTGTTGGAGAGTTGG+AGG | + | chr7_3:51256619-51256638 | Msa1108400:CDS | 45.0% |
| ! | GTGTGTTTCTAACCGTCTTC+TGG | - | chr7_3:51254450-51254469 | None:intergenic | 45.0% |
| !!! | TGTTGCCGATTTTCCACCTA+AGG | + | chr7_3:51256286-51256305 | Msa1108400:CDS | 45.0% |
| CGCATCCTTAGGTGGAAAAT+CGG | - | chr7_3:51256294-51256313 | None:intergenic | 45.0% | |
| GACGAGCATAAAATTCCCTG+AGG | - | chr7_3:51256322-51256341 | None:intergenic | 45.0% | |
| AGCTCCACGTCTTATGTCAA+GGG | - | chr7_3:51256378-51256397 | None:intergenic | 45.0% | |
| AAGCTCCACGTCTTATGTCA+AGG | - | chr7_3:51256379-51256398 | None:intergenic | 45.0% | |
| TGTATGGCTTCAGAGGTGAA+TGG | + | chr7_3:51256504-51256523 | Msa1108400:CDS | 45.0% | |
| ! | AGGTGAATGGCTTGATGACT+TGG | + | chr7_3:51256517-51256536 | Msa1108400:CDS | 45.0% |
| TTGGCGATATCAAGAGTGGA+GGG | - | chr7_3:51256557-51256576 | None:intergenic | 45.0% | |
| TTTGGCGATATCAAGAGTGG+AGG | - | chr7_3:51256558-51256577 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGCACCTCTTCTT+TGG | - | chr7_3:51256576-51256595 | None:intergenic | 45.0% |
| !! | GAAACTTGTTGGAGAGTTGG+AGG | + | chr7_3:51256619-51256638 | Msa1108400:CDS | 45.0% |
| !!! | TATTTTTACTTTTTTTTTTT+TGG | + | chr7_3:51254685-51254704 | Msa1108400:intron | 5.0% |
| !! | AATGATAATTTATAATAATA+CGG | - | chr7_3:51254774-51254793 | None:intergenic | 5.0% |
| !!! | ATTTGTTTTTTTTTAATTTA+TGG | + | chr7_3:51255289-51255308 | Msa1108400:intron | 5.0% |
| !!! | TTTTTATTTTTATTTTGAAA+TGG | + | chr7_3:51256180-51256199 | Msa1108400:intron | 5.0% |
| !!! | TATTTTTACTTTTTTTTTTT+TGG | + | chr7_3:51254685-51254704 | Msa1108400:intron | 5.0% |
| !! | AATGATAATTTATAATAATA+CGG | - | chr7_3:51254774-51254793 | None:intergenic | 5.0% |
| !!! | ATTTGTTTTTTTTTAATTTA+TGG | + | chr7_3:51255289-51255308 | Msa1108400:intron | 5.0% |
| !!! | TTTTTATTTTTATTTTGAAA+TGG | + | chr7_3:51256180-51256199 | Msa1108400:intron | 5.0% |
| TGTTCATCTCGACCATCGGT+GGG | - | chr7_3:51254407-51254426 | None:intergenic | 50.0% | |
| ATGTTCATCTCGACCATCGG+TGG | - | chr7_3:51254408-51254427 | None:intergenic | 50.0% | |
| TCTTTACAGGTCCTGCACCT+CGG | + | chr7_3:51256240-51256259 | Msa1108400:intron | 50.0% | |
| AAATCGGCAACAACAGAGCG+TGG | - | chr7_3:51256278-51256297 | None:intergenic | 50.0% | |
| CATCCCCTTGACATAAGACG+TGG | + | chr7_3:51256371-51256390 | Msa1108400:CDS | 50.0% | |
| GCTCCACGTCTTATGTCAAG+GGG | - | chr7_3:51256377-51256396 | None:intergenic | 50.0% | |
| TCGCAAGAGCTTGAGGAAGT+TGG | - | chr7_3:51256414-51256433 | None:intergenic | 50.0% | |
| AGTGTGATCGCAAGAGCTTG+AGG | - | chr7_3:51256421-51256440 | None:intergenic | 50.0% | |
| ! | ACTTGTTGGAGAGTTGGAGG+AGG | + | chr7_3:51256622-51256641 | Msa1108400:CDS | 50.0% |
| TGTTCATCTCGACCATCGGT+GGG | - | chr7_3:51254407-51254426 | None:intergenic | 50.0% | |
| ATGTTCATCTCGACCATCGG+TGG | - | chr7_3:51254408-51254427 | None:intergenic | 50.0% | |
| TCTTTACAGGTCCTGCACCT+CGG | + | chr7_3:51256240-51256259 | Msa1108400:intron | 50.0% | |
| AAATCGGCAACAACAGAGCG+TGG | - | chr7_3:51256278-51256297 | None:intergenic | 50.0% | |
| CATCCCCTTGACATAAGACG+TGG | + | chr7_3:51256371-51256390 | Msa1108400:CDS | 50.0% | |
| GCTCCACGTCTTATGTCAAG+GGG | - | chr7_3:51256377-51256396 | None:intergenic | 50.0% | |
| TCGCAAGAGCTTGAGGAAGT+TGG | - | chr7_3:51256414-51256433 | None:intergenic | 50.0% | |
| AGTGTGATCGCAAGAGCTTG+AGG | - | chr7_3:51256421-51256440 | None:intergenic | 50.0% | |
| ! | ACTTGTTGGAGAGTTGGAGG+AGG | + | chr7_3:51256622-51256641 | Msa1108400:CDS | 50.0% |
| AGAACATTACGCCGAGGTGC+AGG | - | chr7_3:51256254-51256273 | None:intergenic | 55.0% | |
| CGTGGTAGAACATTACGCCG+AGG | - | chr7_3:51256260-51256279 | None:intergenic | 55.0% | |
| TAAGGATGCGCGACTCCTCA+GGG | + | chr7_3:51256304-51256323 | Msa1108400:CDS | 55.0% | |
| AGAACATTACGCCGAGGTGC+AGG | - | chr7_3:51256254-51256273 | None:intergenic | 55.0% | |
| CGTGGTAGAACATTACGCCG+AGG | - | chr7_3:51256260-51256279 | None:intergenic | 55.0% | |
| TAAGGATGCGCGACTCCTCA+GGG | + | chr7_3:51256304-51256323 | Msa1108400:CDS | 55.0% | |
| CACAACGAGCTTCAGCGCAG+AGG | + | chr7_3:51254467-51254486 | Msa1108400:CDS | 60.0% | |
| AGGAGTCGCGCATCCTTAGG+TGG | - | chr7_3:51256302-51256321 | None:intergenic | 60.0% | |
| CTGAGGAGTCGCGCATCCTT+AGG | - | chr7_3:51256305-51256324 | None:intergenic | 60.0% | |
| CTAAGGATGCGCGACTCCTC+AGG | + | chr7_3:51256303-51256322 | Msa1108400:CDS | 60.0% | |
| CACAACGAGCTTCAGCGCAG+AGG | + | chr7_3:51254467-51254486 | Msa1108400:CDS | 60.0% | |
| AGGAGTCGCGCATCCTTAGG+TGG | - | chr7_3:51256302-51256321 | None:intergenic | 60.0% | |
| CTGAGGAGTCGCGCATCCTT+AGG | - | chr7_3:51256305-51256324 | None:intergenic | 60.0% | |
| CTAAGGATGCGCGACTCCTC+AGG | + | chr7_3:51256303-51256322 | Msa1108400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51254401 | 51256784 | 51254401 | ID=Msa1108400;Name=Msa1108400 |
| chr7_3 | mRNA | 51254401 | 51256784 | 51254401 | ID=Msa1108400-mRNA-1;Parent=Msa1108400;Name=Msa1108400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|217 |
| chr7_3 | exon | 51254401 | 51254518 | 51254401 | ID=Msa1108400-mRNA-1:exon:10501;Parent=Msa1108400-mRNA-1 |
| chr7_3 | exon | 51256249 | 51256784 | 51256249 | ID=Msa1108400-mRNA-1:exon:10502;Parent=Msa1108400-mRNA-1 |
| chr7_3 | CDS | 51254401 | 51254518 | 51254401 | ID=Msa1108400-mRNA-1:cds;Parent=Msa1108400-mRNA-1 |
| chr7_3 | CDS | 51256249 | 51256784 | 51256249 | ID=Msa1108400-mRNA-1:cds;Parent=Msa1108400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
