AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042610 MtrunA17_Chr1g0208301 96.021 377 12 1 1 377 1 374 0.0 749
Msa0042610 MtrunA17_Chr2g0287751 71.429 77 19 1 1 77 1 74 2.89e-29 118
Msa0042610 MtrunA17_Chr0c22g0493881 69.231 78 21 1 1 78 1 75 1.74e-28 114
Msa0042610 MtrunA17_Chr4g0065651 69.231 78 21 1 1 78 1 75 2.82e-28 115
Msa0042610 MtrunA17_Chr4g0032861 83.051 59 10 0 269 327 2 60 1.56e-27 105
Msa0042610 MtrunA17_Chr1g0191671 45.455 165 59 6 1 143 1 156 1.91e-27 113
Msa0042610 MtrunA17_Chr4g0065621 69.231 78 21 1 1 78 1 75 2.99e-27 111
Msa0042610 MtrunA17_Chr7g0269081 67.606 71 23 0 7 77 16 86 8.29e-26 105
Msa0042610 MtrunA17_Chr7g0272571 60.606 66 26 0 12 77 32 97 5.40e-21 93.2
Msa0042610 MtrunA17_Chr3g0111541 42.105 114 60 1 10 123 9 116 6.86e-21 90.1
Msa0042610 MtrunA17_Chr4g0067291 50.000 92 36 1 10 91 71 162 3.40e-20 90.9
Msa0042610 MtrunA17_Chr2g0287741 64.179 67 24 0 15 81 17 83 1.01e-19 90.9
Msa0042610 MtrunA17_Chr2g0296001 60.000 70 28 0 10 79 70 139 2.58e-18 85.5
Msa0042610 MtrunA17_Chr1g0192131 53.425 73 33 1 10 81 12 84 4.08e-18 85.1
Msa0042610 MtrunA17_Chr3g0124411 50.746 67 33 0 11 77 28 94 2.96e-14 69.7
Msa0042610 MtrunA17_Chr8g0382721 51.562 64 31 0 14 77 30 93 2.29e-13 67.4
Msa0042610 MtrunA17_Chr1g0160201 43.939 66 37 0 12 77 24 89 3.97e-13 66.6
Msa0042610 MtrunA17_Chr3g0094841 37.634 93 55 2 12 103 115 205 2.12e-12 66.2
Msa0042610 MtrunA17_Chr5g0414621 47.619 84 36 2 94 169 629 712 2.68e-12 68.6
Msa0042610 MtrunA17_Chr7g0218981 39.437 71 43 0 13 83 4 74 3.33e-12 63.2
Msa0042610 MtrunA17_Chr5g0407821 39.394 66 40 0 12 77 22 87 4.69e-12 63.2
Msa0042610 MtrunA17_Chr2g0325601 39.726 73 43 1 17 89 6 77 7.07e-12 62.8
Msa0042610 MtrunA17_Chr1g0189221 39.706 68 41 0 10 77 50 117 9.12e-12 63.2
Msa0042610 MtrunA17_Chr4g0036931 40.845 71 41 1 8 77 23 93 1.25e-11 62.4
Msa0042610 MtrunA17_Chr3g0145621 39.706 68 40 1 11 77 24 91 5.22e-11 60.5
Msa0042610 MtrunA17_Chr1g0198341 40.000 65 39 0 13 77 4 68 7.56e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042610 AT1G23000.1 42.149 363 136 11 1 339 1 313 2.13e-51 176
Msa0042610 AT1G23000.2 43.056 360 137 11 1 339 61 373 8.06e-51 176
Msa0042610 AT3G06130.2 68.817 93 25 2 1 92 1 90 1.41e-34 130
Msa0042610 AT3G06130.1 68.817 93 25 2 1 92 1 90 3.98e-34 132
Msa0042610 AT5G19090.2 67.778 90 23 2 1 87 1 87 1.78e-32 127
Msa0042610 AT5G19090.3 67.778 90 23 2 1 87 1 87 1.78e-32 127
Msa0042610 AT5G19090.5 67.778 90 23 2 1 87 1 87 4.58e-32 127
Msa0042610 AT5G19090.4 67.778 90 23 2 1 87 1 87 4.58e-32 127
Msa0042610 AT5G19090.1 67.778 90 23 2 1 87 1 87 4.58e-32 127
Msa0042610 AT3G05220.1 63.768 69 25 0 9 77 6 74 3.10e-24 104
Msa0042610 AT5G27690.1 51.807 83 39 1 5 86 21 103 5.57e-23 99.0
Msa0042610 AT1G56210.1 53.731 67 31 0 13 79 40 106 3.05e-17 82.8
Msa0042610 AT5G37860.1 31.148 244 141 9 12 253 9 227 6.31e-17 80.5
Msa0042610 AT1G06330.1 43.939 66 37 0 12 77 1 66 3.26e-13 67.0
Msa0042610 AT3G56891.1 42.623 61 35 0 17 77 20 80 2.30e-12 65.1
Msa0042610 AT3G56891.2 43.636 55 31 0 23 77 3 57 1.49e-11 62.4
Msa0042610 AT1G71050.1 40.909 66 39 0 12 77 27 92 1.59e-11 62.4
Msa0042610 AT2G18196.1 39.706 68 41 0 10 77 43 110 2.66e-11 62.4

Find 92 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATACTAACTTAGAAAA+TGG 0.132364 1_1:+73512076 None:intergenic
TTCATAACCATGTTCTGATT+TGG 0.207548 1_1:+73512714 None:intergenic
CAGCAGAAGGTAACAGTTTC+AGG 0.218037 1_1:-73513134 Msa0042610:CDS
TCATAACCATGTTCTGATTT+GGG 0.272787 1_1:+73512715 None:intergenic
ATAGTAGTTTGACTGTAATT+TGG 0.290054 1_1:-73512059 Msa0042610:three_prime_UTR
GCTGGTAGTGCTACTGTTCT+AGG 0.303996 1_1:-73512519 Msa0042610:CDS
TTAACATAGATGGTGGATAT+TGG 0.307758 1_1:+73512421 None:intergenic
ACCAATGTCACTCGCCCTTT+TGG 0.321785 1_1:+73512587 None:intergenic
GGTGGAAATTCCAATGGTTT+AGG 0.330691 1_1:-73512498 Msa0042610:CDS
TTCATGTTCATTAACATAGA+TGG 0.342463 1_1:+73512411 None:intergenic
CTTTAGCATCTGAAAATGAT+TGG 0.354821 1_1:+73512824 None:intergenic
TTTGCATATGAGTAATTTGC+AGG 0.354899 1_1:+73512249 None:intergenic
ATGAAGAGATGCGGTTCATC+AGG 0.357851 1_1:-73512854 Msa0042610:CDS
GAAGTTGAACAATGCTCAAT+TGG 0.375959 1_1:-73512649 Msa0042610:CDS
AAACTCCTTCAGAGAATTGA+AGG 0.403393 1_1:-73513688 Msa0042610:intron
TGGTGGGACAGGTTTGTGTT+AGG 0.406147 1_1:-73512039 Msa0042610:three_prime_UTR
TGATGAGGAAGAAGAGGAGG+AGG 0.418927 1_1:-73512877 Msa0042610:CDS
GTTATGAAGGAAGGTGCTAA+TGG 0.420368 1_1:-73512699 Msa0042610:CDS
ACAGGTTTGTGTTAGGATGT+TGG 0.428194 1_1:-73512032 Msa0042610:three_prime_UTR
CCAGTAACAAAACCACCATT+TGG 0.437509 1_1:+73512444 None:intergenic
ATCAAGAAACTAGTAAGATC+TGG 0.446205 1_1:-73513089 Msa0042610:CDS
ATAATATTCATCATCCTCTT+CGG 0.450964 1_1:+73512905 None:intergenic
TTGTAATAATAGCCAGTGTT+AGG 0.451520 1_1:+73512288 None:intergenic
TGACTGTAATTTGGTGGGAC+AGG 0.451908 1_1:-73512050 Msa0042610:three_prime_UTR
ACTATACTAACTTAGAAAAT+GGG 0.452023 1_1:+73512077 None:intergenic
CTTTAAGCTCCTTAAAATCC+AGG 0.466184 1_1:-73513942 Msa0042610:intron
CAATGCTCAATTGGCTCAGT+TGG 0.471941 1_1:-73512640 Msa0042610:CDS
TAACTTAGAAAATGGGACTT+AGG 0.477877 1_1:+73512084 None:intergenic
AATGCTGGCAATGGAAATAG+TGG 0.481459 1_1:-73512750 Msa0042610:CDS
AGAGTGCAAGGGAAGTGAAA+AGG 0.485974 1_1:+73514288 None:intergenic
AATGGAAATAGTGGCAAGAA+AGG 0.499764 1_1:-73512741 Msa0042610:CDS
TCTATGTTAATGAACATGAA+TGG 0.505347 1_1:-73512408 Msa0042610:CDS
TTATGAAGGAAGGTGCTAAT+GGG 0.505662 1_1:-73512698 Msa0042610:CDS
AAATCAGAACATGGTTATGA+AGG 0.507037 1_1:-73512712 Msa0042610:CDS
TTACATTATTGAACAGCTGC+TGG 0.507630 1_1:+73512167 None:intergenic
TCAACCTTGGAGAATCCAAA+AGG 0.510252 1_1:-73512602 Msa0042610:CDS
TCCACTGCATCTATTCCAAA+TGG 0.510572 1_1:-73512459 Msa0042610:CDS
TCCAAAAGGGCGAGTGACAT+TGG 0.516238 1_1:-73512588 Msa0042610:CDS
GTTCTGCATCTATTTGAACT+TGG 0.517770 1_1:+73513156 None:intergenic
GTGAGAAAAGGGAAGAGTAA+TGG 0.519314 1_1:+73514339 None:intergenic
GGGAACAATAACAATGGTGC+TGG 0.520248 1_1:-73512537 Msa0042610:CDS
GATGCAAACAATGTGAAGAA+AGG 0.525694 1_1:-73512792 Msa0042610:CDS
TTAAAAGGAGAAAGAGTGCA+AGG 0.528470 1_1:+73514276 None:intergenic
GGTGCTATGATGAATTTAGC+TGG 0.532345 1_1:-73512567 Msa0042610:CDS
GGAAATTCCAATGGTTTAGG+AGG 0.533330 1_1:-73512495 Msa0042610:CDS
GCTCAATTGGCTCAGTTGGT+TGG 0.533914 1_1:-73512636 Msa0042610:CDS
TGAATATGATGAGGAAGAAG+AGG 0.534964 1_1:-73512883 Msa0042610:CDS
TGAGACCTTCAATTCTCTGA+AGG 0.538283 1_1:+73513683 None:intergenic
CCAGTGTTAGGAGGAACAAA+AGG 0.539360 1_1:+73512300 None:intergenic
AAGATGAACAATGCTGGCAA+TGG 0.540672 1_1:-73512759 Msa0042610:CDS
GTGTAGTGGTTGAGATGATG+TGG 0.541426 1_1:-73511966 Msa0042610:three_prime_UTR
GTTCTAGGTGGAAATTCCAA+TGG 0.542544 1_1:-73512504 Msa0042610:CDS
CTGGAAAATATGCTGAGCTC+TGG 0.547828 1_1:-73513070 Msa0042610:CDS
TAAAAGGAGAAAGAGTGCAA+GGG 0.551768 1_1:+73514277 None:intergenic
TAGTTTGACTGTAATTTGGT+GGG 0.552324 1_1:-73512055 Msa0042610:three_prime_UTR
ATATGATGAGGAAGAAGAGG+AGG 0.552870 1_1:-73512880 Msa0042610:CDS
AGCCTCAGATGATGTATCAC+AGG 0.555215 1_1:-73512326 Msa0042610:CDS
CAGAACATGGTTATGAAGGA+AGG 0.555580 1_1:-73512708 Msa0042610:CDS
ATCTTCATTGATGAACATGC+AGG 0.556065 1_1:-73512370 Msa0042610:CDS
TGCATGTTCATCAATGAAGA+TGG 0.558115 1_1:+73512372 None:intergenic
GTAGTTTGACTGTAATTTGG+TGG 0.562864 1_1:-73512056 Msa0042610:three_prime_UTR
TCCTCTTCGGAACTAAAAGC+CGG 0.563236 1_1:+73512918 None:intergenic
ATAGCTAAGATGAACAATGC+TGG 0.570218 1_1:-73512765 Msa0042610:CDS
ATGTTCATTAACATAGATGG+TGG 0.570507 1_1:+73512414 None:intergenic
AGGAAAACCTCCTAAACCAT+TGG 0.574088 1_1:+73512488 None:intergenic
AATAGATGCAGAACAGCAGA+AGG 0.582210 1_1:-73513147 Msa0042610:CDS
GGTAACAGTTTCAGGTAGTG+TGG 0.582801 1_1:-73513126 Msa0042610:CDS
CAACCTTGGAGAATCCAAAA+GGG 0.584061 1_1:-73512601 Msa0042610:CDS
ATAGATGCAGTGGATCCTGC+AGG 0.590027 1_1:+73512468 None:intergenic
TGCAAATGCTTGTTATCCAA+CGG 0.591986 1_1:-73512232 Msa0042610:CDS
TAATAATAGCCAGTGTTAGG+AGG 0.598615 1_1:+73512291 None:intergenic
ACCATTTGGAATAGATGCAG+TGG 0.604596 1_1:+73512458 None:intergenic
GCAAACAAAACAAAGGCACA+TGG 0.606102 1_1:+73514230 None:intergenic
ACTGCATCTATTCCAAATGG+TGG 0.607866 1_1:-73512456 Msa0042610:CDS
TGAAGAGATGCGGTTCATCA+GGG 0.610395 1_1:-73512853 Msa0042610:CDS
CTGCTGCTATTACTAGCTAG+TGG 0.612378 1_1:+73514138 None:intergenic
GGTAATGAAAGTCTCAACCT+TGG 0.624155 1_1:-73512615 Msa0042610:CDS
ATCAGTAGTGTACTGTGTAG+TGG 0.626283 1_1:-73511980 Msa0042610:three_prime_UTR
TTTAATGGGAACAATAACAA+TGG 0.630005 1_1:-73512543 Msa0042610:CDS
AAAGTGAACATTCACTGTGA+TGG 0.643761 1_1:-73513730 Msa0042610:CDS
CTCGAAAGCAAACAAAACAA+AGG 0.646036 1_1:+73514223 None:intergenic
GTCAAAGATGACAAGAACAA+AGG 0.646314 1_1:-73512996 Msa0042610:CDS
AGGAAACCCAAATCAGAACA+TGG 0.652284 1_1:-73512721 Msa0042610:CDS
GCTGCAGAGTGATCCTCCGT+TGG 0.654331 1_1:+73512216 None:intergenic
TGGGATTGAGCAGAAAACAA+TGG 0.655937 1_1:-73512679 Msa0042610:CDS
AGGAGGAGGATGAAGAGATG+CGG 0.665296 1_1:-73512863 Msa0042610:CDS
TGTAGTGGTTGAGATGATGT+GGG 0.669656 1_1:-73511965 Msa0042610:three_prime_UTR
CAAACAAAACAAAGGCACAT+GGG 0.674537 1_1:+73514231 None:intergenic
GACCTGTGATACATCATCTG+AGG 0.691567 1_1:+73512324 None:intergenic
AAATGCTTGTTATCCAACGG+AGG 0.712494 1_1:-73512229 Msa0042610:CDS
GGTAGTGCTACTGTTCTAGG+TGG 0.717323 1_1:-73512516 Msa0042610:CDS
TGAATATTATGAATATGATG+AGG 0.721112 1_1:-73512892 Msa0042610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GCATAAAAATAAATTTTAAA+AGG + chr1_1:73512096-73512115 None:intergenic 10.0%
!!! GCATAAAAATAAATTTTAAA+AGG + chr1_1:73512096-73512115 None:intergenic 10.0%
!! TAAAAAAAAGACCAAATATT+AGG + chr1_1:73512545-73512564 None:intergenic 15.0%
!!! TGGTTTGATTTTTTTTTTTT+TGG - chr1_1:73513127-73513146 Msa0042610:CDS 15.0%
!! TAAAAAAAAGACCAAATATT+AGG + chr1_1:73512545-73512564 None:intergenic 15.0%
!!! TGGTTTGATTTTTTTTTTTT+TGG - chr1_1:73513127-73513146 Msa0042610:CDS 15.0%
!! TTTATGGATAATGTTAACAA+GGG + chr1_1:73512450-73512469 None:intergenic 20.0%
!!! TTTTATGGATAATGTTAACA+AGG + chr1_1:73512451-73512470 None:intergenic 20.0%
!! TAAAATAATAGAAGAGAGAA+GGG + chr1_1:73512513-73512532 None:intergenic 20.0%
!!! TAGTTTAGTTTCCTAATATT+TGG - chr1_1:73512531-73512550 Msa0042610:CDS 20.0%
!!! ATTTTAACTTCAAGAAAACA+AGG + chr1_1:73512766-73512785 None:intergenic 20.0%
!! TTTCTTGAAGTTAAAATGTA+CGG - chr1_1:73512769-73512788 Msa0042610:CDS 20.0%
!! TGAATATTATGAATATGATG+AGG - chr1_1:73513462-73513481 Msa0042610:intron 20.0%
!! ACTATACTAACTTAGAAAAT+GGG + chr1_1:73514280-73514299 None:intergenic 20.0%
!! TACTATACTAACTTAGAAAA+TGG + chr1_1:73514281-73514300 None:intergenic 20.0%
!! TTTATGGATAATGTTAACAA+GGG + chr1_1:73512450-73512469 None:intergenic 20.0%
!!! TTTTATGGATAATGTTAACA+AGG + chr1_1:73512451-73512470 None:intergenic 20.0%
!! TAAAATAATAGAAGAGAGAA+GGG + chr1_1:73512513-73512532 None:intergenic 20.0%
!!! TAGTTTAGTTTCCTAATATT+TGG - chr1_1:73512531-73512550 Msa0042610:CDS 20.0%
!!! ATTTTAACTTCAAGAAAACA+AGG + chr1_1:73512766-73512785 None:intergenic 20.0%
!! TTTCTTGAAGTTAAAATGTA+CGG - chr1_1:73512769-73512788 Msa0042610:CDS 20.0%
!! TGAATATTATGAATATGATG+AGG - chr1_1:73513462-73513481 Msa0042610:intron 20.0%
!! ACTATACTAACTTAGAAAAT+GGG + chr1_1:73514280-73514299 None:intergenic 20.0%
!! TACTATACTAACTTAGAAAA+TGG + chr1_1:73514281-73514300 None:intergenic 20.0%
! TAAAAAATGCAGTGAGAAAA+GGG + chr1_1:73512029-73512048 None:intergenic 25.0%
! ATAAAAAATGCAGTGAGAAA+AGG + chr1_1:73512030-73512049 None:intergenic 25.0%
!!! TTTCTCACTGCATTTTTTAT+TGG - chr1_1:73512030-73512049 Msa0042610:three_prime_UTR 25.0%
! GCAAATGGTAAAACTAAAAA+AGG + chr1_1:73512322-73512341 None:intergenic 25.0%
! TTATGGATAATGTTAACAAG+GGG + chr1_1:73512449-73512468 None:intergenic 25.0%
!!! AGCATGTTGTTTTAGTTTTA+TGG + chr1_1:73512466-73512485 None:intergenic 25.0%
! AAAATAATAGAAGAGAGAAG+GGG + chr1_1:73512512-73512531 None:intergenic 25.0%
! CTAAAATAATAGAAGAGAGA+AGG + chr1_1:73512514-73512533 None:intergenic 25.0%
!! TTTAGTTTACTCACAATGAT+GGG - chr1_1:73512865-73512884 Msa0042610:CDS 25.0%
! TTAAAGGGAGACATAAAAAA+TGG - chr1_1:73512911-73512930 Msa0042610:CDS 25.0%
!!! GCTACTTTTTAAATCTTCAA+TGG - chr1_1:73512987-73513006 Msa0042610:CDS 25.0%
! TAAACACCTATAGAACAAAA+GGG + chr1_1:73513178-73513197 None:intergenic 25.0%
! ATAATATTCATCATCCTCTT+CGG + chr1_1:73513452-73513471 None:intergenic 25.0%
!!! ATGAATTTAGCTGGTTTTAA+TGG - chr1_1:73513796-73513815 Msa0042610:intron 25.0%
!!! TGAATTTAGCTGGTTTTAAT+GGG - chr1_1:73513797-73513816 Msa0042610:intron 25.0%
! TTTAATGGGAACAATAACAA+TGG - chr1_1:73513811-73513830 Msa0042610:intron 25.0%
! TTCATGTTCATTAACATAGA+TGG + chr1_1:73513946-73513965 None:intergenic 25.0%
! TCTATGTTAATGAACATGAA+TGG - chr1_1:73513946-73513965 Msa0042610:CDS 25.0%
! ATTGTAGAGTTAAAAAGTGA+AGG - chr1_1:73514218-73514237 Msa0042610:five_prime_UTR 25.0%
! ATAGTAGTTTGACTGTAATT+TGG - chr1_1:73514295-73514314 Msa0042610:five_prime_UTR 25.0%
! TAAAAAATGCAGTGAGAAAA+GGG + chr1_1:73512029-73512048 None:intergenic 25.0%
! ATAAAAAATGCAGTGAGAAA+AGG + chr1_1:73512030-73512049 None:intergenic 25.0%
!!! TTTCTCACTGCATTTTTTAT+TGG - chr1_1:73512030-73512049 Msa0042610:three_prime_UTR 25.0%
! GCAAATGGTAAAACTAAAAA+AGG + chr1_1:73512322-73512341 None:intergenic 25.0%
! TTATGGATAATGTTAACAAG+GGG + chr1_1:73512449-73512468 None:intergenic 25.0%
!!! AGCATGTTGTTTTAGTTTTA+TGG + chr1_1:73512466-73512485 None:intergenic 25.0%
! AAAATAATAGAAGAGAGAAG+GGG + chr1_1:73512512-73512531 None:intergenic 25.0%
! CTAAAATAATAGAAGAGAGA+AGG + chr1_1:73512514-73512533 None:intergenic 25.0%
!! TTTAGTTTACTCACAATGAT+GGG - chr1_1:73512865-73512884 Msa0042610:CDS 25.0%
! TTAAAGGGAGACATAAAAAA+TGG - chr1_1:73512911-73512930 Msa0042610:CDS 25.0%
!!! GCTACTTTTTAAATCTTCAA+TGG - chr1_1:73512987-73513006 Msa0042610:CDS 25.0%
! TAAACACCTATAGAACAAAA+GGG + chr1_1:73513178-73513197 None:intergenic 25.0%
! ATAATATTCATCATCCTCTT+CGG + chr1_1:73513452-73513471 None:intergenic 25.0%
!!! ATGAATTTAGCTGGTTTTAA+TGG - chr1_1:73513796-73513815 Msa0042610:intron 25.0%
!!! TGAATTTAGCTGGTTTTAAT+GGG - chr1_1:73513797-73513816 Msa0042610:intron 25.0%
! TTTAATGGGAACAATAACAA+TGG - chr1_1:73513811-73513830 Msa0042610:intron 25.0%
! TTCATGTTCATTAACATAGA+TGG + chr1_1:73513946-73513965 None:intergenic 25.0%
! TCTATGTTAATGAACATGAA+TGG - chr1_1:73513946-73513965 Msa0042610:CDS 25.0%
! ATTGTAGAGTTAAAAAGTGA+AGG - chr1_1:73514218-73514237 Msa0042610:five_prime_UTR 25.0%
! ATAGTAGTTTGACTGTAATT+TGG - chr1_1:73514295-73514314 Msa0042610:five_prime_UTR 25.0%
TGTTTGCAAGGAAAAGAATA+AGG + chr1_1:73512358-73512377 None:intergenic 30.0%
!!! CAAGTTTTTTTCTGTTTGCA+AGG + chr1_1:73512370-73512389 None:intergenic 30.0%
AAATAATAGAAGAGAGAAGG+GGG + chr1_1:73512511-73512530 None:intergenic 30.0%
! GTTTAGTTTACTCACAATGA+TGG - chr1_1:73512864-73512883 Msa0042610:CDS 30.0%
TTAGTTTACTCACAATGATG+GGG - chr1_1:73512866-73512885 Msa0042610:CDS 30.0%
TAACTCGCATGACTTATAAA+AGG + chr1_1:73512894-73512913 None:intergenic 30.0%
TTATAAGTCATGCGAGTTAA+AGG - chr1_1:73512895-73512914 Msa0042610:CDS 30.0%
TATAAGTCATGCGAGTTAAA+GGG - chr1_1:73512896-73512915 Msa0042610:CDS 30.0%
AAATCTTCAATGGAAAGCTT+AGG - chr1_1:73512997-73513016 Msa0042610:CDS 30.0%
ATACCTTAGTGTACACTATA+TGG - chr1_1:73513080-73513099 Msa0042610:CDS 30.0%
TATCCATATAGTGTACACTA+AGG + chr1_1:73513086-73513105 None:intergenic 30.0%
TAGTGTACACTATATGGATA+TGG - chr1_1:73513086-73513105 Msa0042610:CDS 30.0%
GGTTAATGTAAACATCACAT+TGG - chr1_1:73513107-73513126 Msa0042610:CDS 30.0%
!!! TTTTTTTTTTTTGGCGTGCT+TGG - chr1_1:73513136-73513155 Msa0042610:CDS 30.0%
! TTTTGACCCTTTTGTTCTAT+AGG - chr1_1:73513169-73513188 Msa0042610:intron 30.0%
GTAAACACCTATAGAACAAA+AGG + chr1_1:73513179-73513198 None:intergenic 30.0%
ATCAAGAAACTAGTAAGATC+TGG - chr1_1:73513265-73513284 Msa0042610:intron 30.0%
!! CTTTTGATTCTGATTGTTGT+TGG + chr1_1:73513320-73513339 None:intergenic 30.0%
AAGAACAAAGGACAAAAACA+AGG - chr1_1:73513370-73513389 Msa0042610:intron 30.0%
CAAAAATCAGCAGAAATTTC+CGG - chr1_1:73513417-73513436 Msa0042610:intron 30.0%
CTTTAGCATCTGAAAATGAT+TGG + chr1_1:73513533-73513552 None:intergenic 30.0%
TCATAACCATGTTCTGATTT+GGG + chr1_1:73513642-73513661 None:intergenic 30.0%
TTCATAACCATGTTCTGATT+TGG + chr1_1:73513643-73513662 None:intergenic 30.0%
AAATCAGAACATGGTTATGA+AGG - chr1_1:73513642-73513661 Msa0042610:intron 30.0%
!! TTAACATAGATGGTGGATAT+TGG + chr1_1:73513936-73513955 None:intergenic 30.0%
ATGTTCATTAACATAGATGG+TGG + chr1_1:73513943-73513962 None:intergenic 30.0%
TTGTAATAATAGCCAGTGTT+AGG + chr1_1:73514069-73514088 None:intergenic 30.0%
! TTTGCATATGAGTAATTTGC+AGG + chr1_1:73514108-73514127 None:intergenic 30.0%
GAAGGAAAAAAGATGCAAAA+TGG - chr1_1:73514236-73514255 Msa0042610:five_prime_UTR 30.0%
TAACTTAGAAAATGGGACTT+AGG + chr1_1:73514273-73514292 None:intergenic 30.0%
TAGTTTGACTGTAATTTGGT+GGG - chr1_1:73514299-73514318 Msa0042610:five_prime_UTR 30.0%
TGTTTGCAAGGAAAAGAATA+AGG + chr1_1:73512358-73512377 None:intergenic 30.0%
!!! CAAGTTTTTTTCTGTTTGCA+AGG + chr1_1:73512370-73512389 None:intergenic 30.0%
AAATAATAGAAGAGAGAAGG+GGG + chr1_1:73512511-73512530 None:intergenic 30.0%
! GTTTAGTTTACTCACAATGA+TGG - chr1_1:73512864-73512883 Msa0042610:CDS 30.0%
TTAGTTTACTCACAATGATG+GGG - chr1_1:73512866-73512885 Msa0042610:CDS 30.0%
TAACTCGCATGACTTATAAA+AGG + chr1_1:73512894-73512913 None:intergenic 30.0%
TTATAAGTCATGCGAGTTAA+AGG - chr1_1:73512895-73512914 Msa0042610:CDS 30.0%
TATAAGTCATGCGAGTTAAA+GGG - chr1_1:73512896-73512915 Msa0042610:CDS 30.0%
AAATCTTCAATGGAAAGCTT+AGG - chr1_1:73512997-73513016 Msa0042610:CDS 30.0%
ATACCTTAGTGTACACTATA+TGG - chr1_1:73513080-73513099 Msa0042610:CDS 30.0%
TATCCATATAGTGTACACTA+AGG + chr1_1:73513086-73513105 None:intergenic 30.0%
TAGTGTACACTATATGGATA+TGG - chr1_1:73513086-73513105 Msa0042610:CDS 30.0%
GGTTAATGTAAACATCACAT+TGG - chr1_1:73513107-73513126 Msa0042610:CDS 30.0%
!!! TTTTTTTTTTTTGGCGTGCT+TGG - chr1_1:73513136-73513155 Msa0042610:CDS 30.0%
! TTTTGACCCTTTTGTTCTAT+AGG - chr1_1:73513169-73513188 Msa0042610:intron 30.0%
GTAAACACCTATAGAACAAA+AGG + chr1_1:73513179-73513198 None:intergenic 30.0%
ATCAAGAAACTAGTAAGATC+TGG - chr1_1:73513265-73513284 Msa0042610:intron 30.0%
!! CTTTTGATTCTGATTGTTGT+TGG + chr1_1:73513320-73513339 None:intergenic 30.0%
AAGAACAAAGGACAAAAACA+AGG - chr1_1:73513370-73513389 Msa0042610:intron 30.0%
CAAAAATCAGCAGAAATTTC+CGG - chr1_1:73513417-73513436 Msa0042610:intron 30.0%
CTTTAGCATCTGAAAATGAT+TGG + chr1_1:73513533-73513552 None:intergenic 30.0%
TCATAACCATGTTCTGATTT+GGG + chr1_1:73513642-73513661 None:intergenic 30.0%
TTCATAACCATGTTCTGATT+TGG + chr1_1:73513643-73513662 None:intergenic 30.0%
AAATCAGAACATGGTTATGA+AGG - chr1_1:73513642-73513661 Msa0042610:intron 30.0%
!! TTAACATAGATGGTGGATAT+TGG + chr1_1:73513936-73513955 None:intergenic 30.0%
ATGTTCATTAACATAGATGG+TGG + chr1_1:73513943-73513962 None:intergenic 30.0%
TTGTAATAATAGCCAGTGTT+AGG + chr1_1:73514069-73514088 None:intergenic 30.0%
! TTTGCATATGAGTAATTTGC+AGG + chr1_1:73514108-73514127 None:intergenic 30.0%
GAAGGAAAAAAGATGCAAAA+TGG - chr1_1:73514236-73514255 Msa0042610:five_prime_UTR 30.0%
TAACTTAGAAAATGGGACTT+AGG + chr1_1:73514273-73514292 None:intergenic 30.0%
TAGTTTGACTGTAATTTGGT+GGG - chr1_1:73514299-73514318 Msa0042610:five_prime_UTR 30.0%
! TAAAAGGAGAAAGAGTGCAA+GGG + chr1_1:73512080-73512099 None:intergenic 35.0%
! TTAAAAGGAGAAAGAGTGCA+AGG + chr1_1:73512081-73512100 None:intergenic 35.0%
! CAAACAAAACAAAGGCACAT+GGG + chr1_1:73512126-73512145 None:intergenic 35.0%
CTCGAAAGCAAACAAAACAA+AGG + chr1_1:73512134-73512153 None:intergenic 35.0%
TGCAAGGAAAAGAATAAGGT+AGG + chr1_1:73512354-73512373 None:intergenic 35.0%
CTTTAAGCTCCTTAAAATCC+AGG - chr1_1:73512412-73512431 Msa0042610:CDS 35.0%
!!! AAAGAGGTACCTGGATTTTA+AGG + chr1_1:73512424-73512443 None:intergenic 35.0%
AATAATAGAAGAGAGAAGGG+GGG + chr1_1:73512510-73512529 None:intergenic 35.0%
AAAGTGAACATTCACTGTGA+TGG - chr1_1:73512624-73512643 Msa0042610:CDS 35.0%
AAACTCCTTCAGAGAATTGA+AGG - chr1_1:73512666-73512685 Msa0042610:CDS 35.0%
!! AACTGTTTTGTTGCAACAAG+TGG - chr1_1:73512953-73512972 Msa0042610:CDS 35.0%
TGGAAAGCTTAGGCTATAAA+AGG - chr1_1:73513007-73513026 Msa0042610:CDS 35.0%
GTTCTGCATCTATTTGAACT+TGG + chr1_1:73513201-73513220 None:intergenic 35.0%
GTCAAAGATGACAAGAACAA+AGG - chr1_1:73513358-73513377 Msa0042610:intron 35.0%
!! AAAAACAAGGACTGGTCAAA+GGG - chr1_1:73513383-73513402 Msa0042610:intron 35.0%
TGAATATGATGAGGAAGAAG+AGG - chr1_1:73513471-73513490 Msa0042610:intron 35.0%
GATGCAAACAATGTGAAGAA+AGG - chr1_1:73513562-73513581 Msa0042610:intron 35.0%
ATAGCTAAGATGAACAATGC+TGG - chr1_1:73513589-73513608 Msa0042610:intron 35.0%
AATGGAAATAGTGGCAAGAA+AGG - chr1_1:73513613-73513632 Msa0042610:intron 35.0%
!! TTATGAAGGAAGGTGCTAAT+GGG - chr1_1:73513656-73513675 Msa0042610:intron 35.0%
GAAGTTGAACAATGCTCAAT+TGG - chr1_1:73513705-73513724 Msa0042610:CDS 35.0%
TGCATGTTCATCAATGAAGA+TGG + chr1_1:73513985-73514004 None:intergenic 35.0%
ATCTTCATTGATGAACATGC+AGG - chr1_1:73513984-73514003 Msa0042610:intron 35.0%
TAATAATAGCCAGTGTTAGG+AGG + chr1_1:73514066-73514085 None:intergenic 35.0%
!! TGCAAATGCTTGTTATCCAA+CGG - chr1_1:73514122-73514141 Msa0042610:five_prime_UTR 35.0%
TTACATTATTGAACAGCTGC+TGG + chr1_1:73514190-73514209 None:intergenic 35.0%
GTAGTTTGACTGTAATTTGG+TGG - chr1_1:73514298-73514317 Msa0042610:five_prime_UTR 35.0%
! TAAAAGGAGAAAGAGTGCAA+GGG + chr1_1:73512080-73512099 None:intergenic 35.0%
! TTAAAAGGAGAAAGAGTGCA+AGG + chr1_1:73512081-73512100 None:intergenic 35.0%
! CAAACAAAACAAAGGCACAT+GGG + chr1_1:73512126-73512145 None:intergenic 35.0%
CTCGAAAGCAAACAAAACAA+AGG + chr1_1:73512134-73512153 None:intergenic 35.0%
TGCAAGGAAAAGAATAAGGT+AGG + chr1_1:73512354-73512373 None:intergenic 35.0%
CTTTAAGCTCCTTAAAATCC+AGG - chr1_1:73512412-73512431 Msa0042610:CDS 35.0%
!!! AAAGAGGTACCTGGATTTTA+AGG + chr1_1:73512424-73512443 None:intergenic 35.0%
AATAATAGAAGAGAGAAGGG+GGG + chr1_1:73512510-73512529 None:intergenic 35.0%
AAAGTGAACATTCACTGTGA+TGG - chr1_1:73512624-73512643 Msa0042610:CDS 35.0%
AAACTCCTTCAGAGAATTGA+AGG - chr1_1:73512666-73512685 Msa0042610:CDS 35.0%
!! AACTGTTTTGTTGCAACAAG+TGG - chr1_1:73512953-73512972 Msa0042610:CDS 35.0%
TGGAAAGCTTAGGCTATAAA+AGG - chr1_1:73513007-73513026 Msa0042610:CDS 35.0%
GTTCTGCATCTATTTGAACT+TGG + chr1_1:73513201-73513220 None:intergenic 35.0%
GTCAAAGATGACAAGAACAA+AGG - chr1_1:73513358-73513377 Msa0042610:intron 35.0%
!! AAAAACAAGGACTGGTCAAA+GGG - chr1_1:73513383-73513402 Msa0042610:intron 35.0%
TGAATATGATGAGGAAGAAG+AGG - chr1_1:73513471-73513490 Msa0042610:intron 35.0%
GATGCAAACAATGTGAAGAA+AGG - chr1_1:73513562-73513581 Msa0042610:intron 35.0%
ATAGCTAAGATGAACAATGC+TGG - chr1_1:73513589-73513608 Msa0042610:intron 35.0%
AATGGAAATAGTGGCAAGAA+AGG - chr1_1:73513613-73513632 Msa0042610:intron 35.0%
!! TTATGAAGGAAGGTGCTAAT+GGG - chr1_1:73513656-73513675 Msa0042610:intron 35.0%
GAAGTTGAACAATGCTCAAT+TGG - chr1_1:73513705-73513724 Msa0042610:CDS 35.0%
TGCATGTTCATCAATGAAGA+TGG + chr1_1:73513985-73514004 None:intergenic 35.0%
ATCTTCATTGATGAACATGC+AGG - chr1_1:73513984-73514003 Msa0042610:intron 35.0%
TAATAATAGCCAGTGTTAGG+AGG + chr1_1:73514066-73514085 None:intergenic 35.0%
!! TGCAAATGCTTGTTATCCAA+CGG - chr1_1:73514122-73514141 Msa0042610:five_prime_UTR 35.0%
TTACATTATTGAACAGCTGC+TGG + chr1_1:73514190-73514209 None:intergenic 35.0%
GTAGTTTGACTGTAATTTGG+TGG - chr1_1:73514298-73514317 Msa0042610:five_prime_UTR 35.0%
GTGAGAAAAGGGAAGAGTAA+TGG + chr1_1:73512018-73512037 None:intergenic 40.0%
! GCAAACAAAACAAAGGCACA+TGG + chr1_1:73512127-73512146 None:intergenic 40.0%
GGTAGGTTAAGCTAAGCAAA+TGG + chr1_1:73512337-73512356 None:intergenic 40.0%
ATGTTAACAAGGGGAGAAAG+AGG + chr1_1:73512440-73512459 None:intergenic 40.0%
TGAGACCTTCAATTCTCTGA+AGG + chr1_1:73512674-73512693 None:intergenic 40.0%
AATAGATGCAGAACAGCAGA+AGG - chr1_1:73513207-73513226 Msa0042610:intron 40.0%
CAAAGGACAAAAACAAGGAC+TGG - chr1_1:73513375-73513394 Msa0042610:intron 40.0%
!! CAAAAACAAGGACTGGTCAA+AGG - chr1_1:73513382-73513401 Msa0042610:intron 40.0%
ATATGATGAGGAAGAAGAGG+AGG - chr1_1:73513474-73513493 Msa0042610:intron 40.0%
AAGATGAACAATGCTGGCAA+TGG - chr1_1:73513595-73513614 Msa0042610:intron 40.0%
AATGCTGGCAATGGAAATAG+TGG - chr1_1:73513604-73513623 Msa0042610:intron 40.0%
AGGAAACCCAAATCAGAACA+TGG - chr1_1:73513633-73513652 Msa0042610:intron 40.0%
CAGAACATGGTTATGAAGGA+AGG - chr1_1:73513646-73513665 Msa0042610:intron 40.0%
!! GTTATGAAGGAAGGTGCTAA+TGG - chr1_1:73513655-73513674 Msa0042610:intron 40.0%
TGGGATTGAGCAGAAAACAA+TGG - chr1_1:73513675-73513694 Msa0042610:intron 40.0%
GGTAATGAAAGTCTCAACCT+TGG - chr1_1:73513739-73513758 Msa0042610:CDS 40.0%
TCAACCTTGGAGAATCCAAA+AGG - chr1_1:73513752-73513771 Msa0042610:intron 40.0%
CAACCTTGGAGAATCCAAAA+GGG - chr1_1:73513753-73513772 Msa0042610:intron 40.0%
! GGTGCTATGATGAATTTAGC+TGG - chr1_1:73513787-73513806 Msa0042610:intron 40.0%
! GTTCTAGGTGGAAATTCCAA+TGG - chr1_1:73513850-73513869 Msa0042610:intron 40.0%
GGTGGAAATTCCAATGGTTT+AGG - chr1_1:73513856-73513875 Msa0042610:intron 40.0%
GGAAATTCCAATGGTTTAGG+AGG - chr1_1:73513859-73513878 Msa0042610:intron 40.0%
AGGAAAACCTCCTAAACCAT+TGG + chr1_1:73513869-73513888 None:intergenic 40.0%
TCCACTGCATCTATTCCAAA+TGG - chr1_1:73513895-73513914 Msa0042610:intron 40.0%
! ACCATTTGGAATAGATGCAG+TGG + chr1_1:73513899-73513918 None:intergenic 40.0%
ACTGCATCTATTCCAAATGG+TGG - chr1_1:73513898-73513917 Msa0042610:intron 40.0%
CCAGTAACAAAACCACCATT+TGG + chr1_1:73513913-73513932 None:intergenic 40.0%
!!! CCAAATGGTGGTTTTGTTAC+TGG - chr1_1:73513910-73513929 Msa0042610:intron 40.0%
!! AAATGCTTGTTATCCAACGG+AGG - chr1_1:73514125-73514144 Msa0042610:five_prime_UTR 40.0%
ACAGGTTTGTGTTAGGATGT+TGG - chr1_1:73514322-73514341 Msa0042610:five_prime_UTR 40.0%
ATCAGTAGTGTACTGTGTAG+TGG - chr1_1:73514374-73514393 Msa0042610:five_prime_UTR 40.0%
TGTAGTGGTTGAGATGATGT+GGG - chr1_1:73514389-73514408 Msa0042610:five_prime_UTR 40.0%
GTGAGAAAAGGGAAGAGTAA+TGG + chr1_1:73512018-73512037 None:intergenic 40.0%
! GCAAACAAAACAAAGGCACA+TGG + chr1_1:73512127-73512146 None:intergenic 40.0%
GGTAGGTTAAGCTAAGCAAA+TGG + chr1_1:73512337-73512356 None:intergenic 40.0%
ATGTTAACAAGGGGAGAAAG+AGG + chr1_1:73512440-73512459 None:intergenic 40.0%
TGAGACCTTCAATTCTCTGA+AGG + chr1_1:73512674-73512693 None:intergenic 40.0%
AATAGATGCAGAACAGCAGA+AGG - chr1_1:73513207-73513226 Msa0042610:intron 40.0%
CAAAGGACAAAAACAAGGAC+TGG - chr1_1:73513375-73513394 Msa0042610:intron 40.0%
!! CAAAAACAAGGACTGGTCAA+AGG - chr1_1:73513382-73513401 Msa0042610:intron 40.0%
ATATGATGAGGAAGAAGAGG+AGG - chr1_1:73513474-73513493 Msa0042610:intron 40.0%
AAGATGAACAATGCTGGCAA+TGG - chr1_1:73513595-73513614 Msa0042610:intron 40.0%
AATGCTGGCAATGGAAATAG+TGG - chr1_1:73513604-73513623 Msa0042610:intron 40.0%
AGGAAACCCAAATCAGAACA+TGG - chr1_1:73513633-73513652 Msa0042610:intron 40.0%
CAGAACATGGTTATGAAGGA+AGG - chr1_1:73513646-73513665 Msa0042610:intron 40.0%
!! GTTATGAAGGAAGGTGCTAA+TGG - chr1_1:73513655-73513674 Msa0042610:intron 40.0%
TGGGATTGAGCAGAAAACAA+TGG - chr1_1:73513675-73513694 Msa0042610:intron 40.0%
GGTAATGAAAGTCTCAACCT+TGG - chr1_1:73513739-73513758 Msa0042610:CDS 40.0%
TCAACCTTGGAGAATCCAAA+AGG - chr1_1:73513752-73513771 Msa0042610:intron 40.0%
CAACCTTGGAGAATCCAAAA+GGG - chr1_1:73513753-73513772 Msa0042610:intron 40.0%
! GGTGCTATGATGAATTTAGC+TGG - chr1_1:73513787-73513806 Msa0042610:intron 40.0%
! GTTCTAGGTGGAAATTCCAA+TGG - chr1_1:73513850-73513869 Msa0042610:intron 40.0%
GGTGGAAATTCCAATGGTTT+AGG - chr1_1:73513856-73513875 Msa0042610:intron 40.0%
GGAAATTCCAATGGTTTAGG+AGG - chr1_1:73513859-73513878 Msa0042610:intron 40.0%
AGGAAAACCTCCTAAACCAT+TGG + chr1_1:73513869-73513888 None:intergenic 40.0%
TCCACTGCATCTATTCCAAA+TGG - chr1_1:73513895-73513914 Msa0042610:intron 40.0%
! ACCATTTGGAATAGATGCAG+TGG + chr1_1:73513899-73513918 None:intergenic 40.0%
ACTGCATCTATTCCAAATGG+TGG - chr1_1:73513898-73513917 Msa0042610:intron 40.0%
CCAGTAACAAAACCACCATT+TGG + chr1_1:73513913-73513932 None:intergenic 40.0%
!!! CCAAATGGTGGTTTTGTTAC+TGG - chr1_1:73513910-73513929 Msa0042610:intron 40.0%
!! AAATGCTTGTTATCCAACGG+AGG - chr1_1:73514125-73514144 Msa0042610:five_prime_UTR 40.0%
ACAGGTTTGTGTTAGGATGT+TGG - chr1_1:73514322-73514341 Msa0042610:five_prime_UTR 40.0%
ATCAGTAGTGTACTGTGTAG+TGG - chr1_1:73514374-73514393 Msa0042610:five_prime_UTR 40.0%
TGTAGTGGTTGAGATGATGT+GGG - chr1_1:73514389-73514408 Msa0042610:five_prime_UTR 40.0%
AGAGTGCAAGGGAAGTGAAA+AGG + chr1_1:73512069-73512088 None:intergenic 45.0%
CTGCTGCTATTACTAGCTAG+TGG + chr1_1:73512219-73512238 None:intergenic 45.0%
CAGCAGAAGGTAACAGTTTC+AGG - chr1_1:73513220-73513239 Msa0042610:intron 45.0%
! GGTAACAGTTTCAGGTAGTG+TGG - chr1_1:73513228-73513247 Msa0042610:intron 45.0%
CTGGAAAATATGCTGAGCTC+TGG - chr1_1:73513284-73513303 Msa0042610:intron 45.0%
TCCTCTTCGGAACTAAAAGC+CGG + chr1_1:73513439-73513458 None:intergenic 45.0%
ATGAAGAGATGCGGTTCATC+AGG - chr1_1:73513500-73513519 Msa0042610:intron 45.0%
TGAAGAGATGCGGTTCATCA+GGG - chr1_1:73513501-73513520 Msa0042610:intron 45.0%
! CAATGCTCAATTGGCTCAGT+TGG - chr1_1:73513714-73513733 Msa0042610:CDS 45.0%
GGGAACAATAACAATGGTGC+TGG - chr1_1:73513817-73513836 Msa0042610:intron 45.0%
AGCCTCAGATGATGTATCAC+AGG - chr1_1:73514028-73514047 Msa0042610:intron 45.0%
GACCTGTGATACATCATCTG+AGG + chr1_1:73514033-73514052 None:intergenic 45.0%
CCAGTGTTAGGAGGAACAAA+AGG + chr1_1:73514057-73514076 None:intergenic 45.0%
! CCTTTTGTTCCTCCTAACAC+TGG - chr1_1:73514054-73514073 Msa0042610:intron 45.0%
! TGACTGTAATTTGGTGGGAC+AGG - chr1_1:73514304-73514323 Msa0042610:five_prime_UTR 45.0%
GTGTAGTGGTTGAGATGATG+TGG - chr1_1:73514388-73514407 Msa0042610:five_prime_UTR 45.0%
AGAGTGCAAGGGAAGTGAAA+AGG + chr1_1:73512069-73512088 None:intergenic 45.0%
CTGCTGCTATTACTAGCTAG+TGG + chr1_1:73512219-73512238 None:intergenic 45.0%
CAGCAGAAGGTAACAGTTTC+AGG - chr1_1:73513220-73513239 Msa0042610:intron 45.0%
! GGTAACAGTTTCAGGTAGTG+TGG - chr1_1:73513228-73513247 Msa0042610:intron 45.0%
CTGGAAAATATGCTGAGCTC+TGG - chr1_1:73513284-73513303 Msa0042610:intron 45.0%
TCCTCTTCGGAACTAAAAGC+CGG + chr1_1:73513439-73513458 None:intergenic 45.0%
ATGAAGAGATGCGGTTCATC+AGG - chr1_1:73513500-73513519 Msa0042610:intron 45.0%
TGAAGAGATGCGGTTCATCA+GGG - chr1_1:73513501-73513520 Msa0042610:intron 45.0%
! CAATGCTCAATTGGCTCAGT+TGG - chr1_1:73513714-73513733 Msa0042610:CDS 45.0%
GGGAACAATAACAATGGTGC+TGG - chr1_1:73513817-73513836 Msa0042610:intron 45.0%
AGCCTCAGATGATGTATCAC+AGG - chr1_1:73514028-73514047 Msa0042610:intron 45.0%
GACCTGTGATACATCATCTG+AGG + chr1_1:73514033-73514052 None:intergenic 45.0%
CCAGTGTTAGGAGGAACAAA+AGG + chr1_1:73514057-73514076 None:intergenic 45.0%
! CCTTTTGTTCCTCCTAACAC+TGG - chr1_1:73514054-73514073 Msa0042610:intron 45.0%
! TGACTGTAATTTGGTGGGAC+AGG - chr1_1:73514304-73514323 Msa0042610:five_prime_UTR 45.0%
GTGTAGTGGTTGAGATGATG+TGG - chr1_1:73514388-73514407 Msa0042610:five_prime_UTR 45.0%
!!! AAGATATTTTAAAAAAAAAA+AGG + chr1_1:73513052-73513071 None:intergenic 5.0%
!!! AAGATATTTTAAAAAAAAAA+AGG + chr1_1:73513052-73513071 None:intergenic 5.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_1:73511970-73511989 None:intergenic 50.0%
TGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:73511971-73511990 None:intergenic 50.0%
!!! TCCGGCTTTTAGTTCCGAAG+AGG - chr1_1:73513435-73513454 Msa0042610:intron 50.0%
TGATGAGGAAGAAGAGGAGG+AGG - chr1_1:73513477-73513496 Msa0042610:intron 50.0%
AGGAGGAGGATGAAGAGATG+CGG - chr1_1:73513491-73513510 Msa0042610:intron 50.0%
! GCTCAATTGGCTCAGTTGGT+TGG - chr1_1:73513718-73513737 Msa0042610:CDS 50.0%
! TCGCCCTTTTGGATTCTCCA+AGG + chr1_1:73513759-73513778 None:intergenic 50.0%
TCCAAAAGGGCGAGTGACAT+TGG - chr1_1:73513766-73513785 Msa0042610:intron 50.0%
! ACCAATGTCACTCGCCCTTT+TGG + chr1_1:73513770-73513789 None:intergenic 50.0%
! GCTGGTAGTGCTACTGTTCT+AGG - chr1_1:73513835-73513854 Msa0042610:intron 50.0%
! GGTAGTGCTACTGTTCTAGG+TGG - chr1_1:73513838-73513857 Msa0042610:intron 50.0%
! GGTTTAGGAGGTTTTCCTGC+AGG - chr1_1:73513871-73513890 Msa0042610:intron 50.0%
ATAGATGCAGTGGATCCTGC+AGG + chr1_1:73513889-73513908 None:intergenic 50.0%
TGGTGGGACAGGTTTGTGTT+AGG - chr1_1:73514315-73514334 Msa0042610:five_prime_UTR 50.0%
GAGAGAGAGAGAGAGGGTTT+GGG + chr1_1:73511964-73511983 None:intergenic 50.0%
AGAGAGAGAGAGAGAGGGTT+TGG + chr1_1:73511965-73511984 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_1:73511970-73511989 None:intergenic 50.0%
TGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:73511971-73511990 None:intergenic 50.0%
!!! TCCGGCTTTTAGTTCCGAAG+AGG - chr1_1:73513435-73513454 Msa0042610:intron 50.0%
TGATGAGGAAGAAGAGGAGG+AGG - chr1_1:73513477-73513496 Msa0042610:intron 50.0%
AGGAGGAGGATGAAGAGATG+CGG - chr1_1:73513491-73513510 Msa0042610:intron 50.0%
! GCTCAATTGGCTCAGTTGGT+TGG - chr1_1:73513718-73513737 Msa0042610:CDS 50.0%
! TCGCCCTTTTGGATTCTCCA+AGG + chr1_1:73513759-73513778 None:intergenic 50.0%
TCCAAAAGGGCGAGTGACAT+TGG - chr1_1:73513766-73513785 Msa0042610:intron 50.0%
! ACCAATGTCACTCGCCCTTT+TGG + chr1_1:73513770-73513789 None:intergenic 50.0%
! GCTGGTAGTGCTACTGTTCT+AGG - chr1_1:73513835-73513854 Msa0042610:intron 50.0%
! GGTAGTGCTACTGTTCTAGG+TGG - chr1_1:73513838-73513857 Msa0042610:intron 50.0%
! GGTTTAGGAGGTTTTCCTGC+AGG - chr1_1:73513871-73513890 Msa0042610:intron 50.0%
ATAGATGCAGTGGATCCTGC+AGG + chr1_1:73513889-73513908 None:intergenic 50.0%
TGGTGGGACAGGTTTGTGTT+AGG - chr1_1:73514315-73514334 Msa0042610:five_prime_UTR 50.0%
!! CAAGGGGAGAAAGAGGTACC+TGG + chr1_1:73512433-73512452 None:intergenic 55.0%
!! CAAGGGGAGAAAGAGGTACC+TGG + chr1_1:73512433-73512452 None:intergenic 55.0%
GCTGCAGAGTGATCCTCCGT+TGG + chr1_1:73514141-73514160 None:intergenic 60.0%
GCTGCAGAGTGATCCTCCGT+TGG + chr1_1:73514141-73514160 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73511963 73514413 73511963 ID=Msa0042610;Name=Msa0042610
chr1_1 mRNA 73511963 73514413 73511963 ID=Msa0042610-mRNA-1;Parent=Msa0042610;Name=Msa0042610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=308|1|1|1|0.66|0.5|4|204|377
chr1_1 exon 73511963 73513185 73511963 ID=Msa0042610-mRNA-1:exon:24661;Parent=Msa0042610-mRNA-1
chr1_1 exon 73513689 73513764 73513689 ID=Msa0042610-mRNA-1:exon:24660;Parent=Msa0042610-mRNA-1
chr1_1 exon 73513943 73513997 73513943 ID=Msa0042610-mRNA-1:exon:24659;Parent=Msa0042610-mRNA-1
chr1_1 exon 73514122 73514413 73514122 ID=Msa0042610-mRNA-1:exon:24658;Parent=Msa0042610-mRNA-1
chr1_1 five_prime_UTR 73514122 73514413 73514122 ID=Msa0042610-mRNA-1:five_prime_utr;Parent=Msa0042610-mRNA-1
chr1_1 five_prime_UTR 73513982 73513997 73513982 ID=Msa0042610-mRNA-1:five_prime_utr;Parent=Msa0042610-mRNA-1
chr1_1 CDS 73513943 73513981 73513943 ID=Msa0042610-mRNA-1:cds;Parent=Msa0042610-mRNA-1
chr1_1 CDS 73513689 73513764 73513689 ID=Msa0042610-mRNA-1:cds;Parent=Msa0042610-mRNA-1
chr1_1 CDS 73512167 73513185 73512167 ID=Msa0042610-mRNA-1:cds;Parent=Msa0042610-mRNA-1
chr1_1 three_prime_UTR 73511963 73512166 73511963 ID=Msa0042610-mRNA-1:three_prime_utr;Parent=Msa0042610-mRNA-1
Gene Sequence

>Msa0042610

ATGACTAAAGAAGAAGACTTTAAGCTCCTTAAAATCCAGACTTGTGTTCTCAAAGTGAACATTCACTGTGATGGTTGTAAGCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTTCAAATAGATGCAGAACAGCAGAAGGTAACAGTTTCAGGTAGTGTGGATGCTGCAACTTTGATCAAGAAACTAGTAAGATCTGGAAAATATGCTGAGCTCTGGTCTCAGAAAACCAACAACAATCAGAATCAAAAGCAGAAGAACAACAACAATGTCAAAGATGACAAGAACAAAGGACAAAAACAAGGACTGGTCAAAGGGCTTGAAGTCTTCAAAAATCAGCAGAAATTTCCGGCTTTTAGTTCCGAAGAGGATGATGAATATTATGAATATGATGAGGAAGAAGAGGAGGAGGATGAAGAGATGCGGTTCATCAGGGAGAAAGCCAATCATTTTCAGATGCTAAAGCAAGCAACAGATGCAAACAATGTGAAGAAAGGTATTATAGCTAAGATGAACAATGCTGGCAATGGAAATAGTGGCAAGAAAGGAAACCCAAATCAGAACATGGTTATGAAGGAAGGTGCTAATGGGATTGAGCAGAAAACAATGGCAGCTATGAAGTTGAACAATGCTCAATTGGCTCAGTTGGTTGGTAATGAAAGTCTCAACCTTGGAGAATCCAAAAGGGCGAGTGACATTGGTGCTATGATGAATTTAGCTGGTTTTAATGGGAACAATAACAATGGTGCTGGTAGTGCTACTGTTCTAGGTGGAAATTCCAATGGTTTAGGAGGTTTTCCTGCAGGATCCACTGCATCTATTCCAAATGGTGGTTTTGTTACTGGCCAATATCCACCATCTATGTTAATGAACATGAATGGTTTCAATAATCATCCATCTTCATTGATGAACATGCAGGCAAGACATGCTATGCAGCAACAGCCTCAGATGATGTATCACAGGTCACCTTTTGTTCCTCCTAACACTGGCTATTATTACAATTATAATAACTACATTCCTGCAAATTACTCATATGCAAATGCTTGTTATCCAACGGAGGATCACTCTGCAGCACACATGTTCAGTGATGACAATACTACCAGCAGCTGTTCAATAATGTAA

Protein sequence

>Msa0042610

MTKEEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVQIDAEQQKVTVSGSVDAATLIKKLVRSGKYAELWSQKTNNNQNQKQKNNNNVKDDKNKGQKQGLVKGLEVFKNQQKFPAFSSEEDDEYYEYDEEEEEEDEEMRFIREKANHFQMLKQATDANNVKKGIIAKMNNAGNGNSGKKGNPNQNMVMKEGANGIEQKTMAAMKLNNAQLAQLVGNESLNLGESKRASDIGAMMNLAGFNGNNNNGAGSATVLGGNSNGLGGFPAGSTASIPNGGFVTGQYPPSMLMNMNGFNNHPSSLMNMQARHAMQQQPQMMYHRSPFVPPNTGYYYNYNNYIPANYSYANACYPTEDHSAAHMFSDDNTTSSCSIM*