Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116170 | XP_013449733.1 | 97.706 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 1.82e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116170 | sp|Q75HV0|CCP31_ORYSJ | 51.316 | 228 | 98 | 4 | 1 | 218 | 3 | 227 | 2.47e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116170 | I3SJG7 | 97.706 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 8.69e-158 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090320 | Msa1116170 | 0.802444 | 5.593867e-49 | -8.615850e-47 |
| Msa0804850 | Msa1116170 | 0.822911 | 1.838304e-53 | -8.615850e-47 |
| Msa0137640 | Msa1116170 | 0.805449 | 1.327642e-49 | -8.615850e-47 |
| Msa0182740 | Msa1116170 | 0.801095 | 1.058151e-48 | -8.615850e-47 |
| Msa0292930 | Msa1116170 | 0.803381 | 3.582763e-49 | -8.615850e-47 |
| Msa0362450 | Msa1116170 | 0.835136 | 2.000648e-56 | -8.615850e-47 |
| Msa1116170 | Msa1367850 | 0.806073 | 9.820803e-50 | -8.615850e-47 |
| Msa0967280 | Msa1116170 | 0.824051 | 9.949260e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116170 | MtrunA17_Chr7g0259831 | 97.706 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 1.67e-161 | 444 |
| Msa1116170 | MtrunA17_Chr7g0250121 | 48.780 | 164 | 81 | 2 | 21 | 183 | 1 | 162 | 6.86e-59 | 184 |
| Msa1116170 | MtrunA17_Chr8g0335971 | 51.899 | 158 | 71 | 3 | 30 | 186 | 9 | 162 | 1.09e-55 | 176 |
| Msa1116170 | MtrunA17_Chr2g0322921 | 43.781 | 201 | 97 | 3 | 28 | 212 | 23 | 223 | 1.09e-42 | 144 |
| Msa1116170 | MtrunA17_Chr7g0231431 | 39.241 | 158 | 91 | 3 | 31 | 183 | 29 | 186 | 1.81e-39 | 135 |
| Msa1116170 | MtrunA17_Chr4g0012811 | 41.250 | 160 | 89 | 3 | 29 | 183 | 27 | 186 | 2.51e-32 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116170 | AT3G63120.2 | 51.584 | 221 | 95 | 6 | 6 | 217 | 4 | 221 | 5.52e-65 | 201 |
| Msa1116170 | AT3G63120.1 | 51.584 | 221 | 95 | 6 | 6 | 217 | 4 | 221 | 5.52e-65 | 201 |
| Msa1116170 | AT2G44740.1 | 44.103 | 195 | 100 | 3 | 21 | 210 | 1 | 191 | 2.05e-56 | 178 |
| Msa1116170 | AT3G05327.1 | 46.597 | 191 | 93 | 3 | 4 | 185 | 1 | 191 | 3.90e-56 | 177 |
| Msa1116170 | AT5G07450.1 | 46.452 | 155 | 82 | 1 | 30 | 183 | 20 | 174 | 1.66e-49 | 161 |
| Msa1116170 | AT3G21870.1 | 44.503 | 191 | 91 | 4 | 20 | 195 | 6 | 196 | 4.38e-48 | 157 |
| Msa1116170 | AT5G61650.1 | 44.848 | 165 | 84 | 3 | 22 | 183 | 12 | 172 | 2.68e-47 | 155 |
| Msa1116170 | AT2G45080.1 | 37.264 | 212 | 127 | 3 | 1 | 209 | 1 | 209 | 3.22e-42 | 142 |
| Msa1116170 | AT3G60550.1 | 37.634 | 186 | 107 | 4 | 3 | 183 | 6 | 187 | 5.41e-39 | 134 |
Find 59 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTGGGGCTTAAAGATT+TGG | 0.261445 | 7_3:+63809205 | Msa1116170:CDS |
| TCATCCCTTGCGGTTTGTTT+TGG | 0.284493 | 7_3:+63810346 | Msa1116170:three_prime_UTR |
| ATTTCTTTGCAGCTTGGATA+TGG | 0.322874 | 7_3:+63809136 | Msa1116170:intron |
| GGGCTTAAAGATTTGGATAA+AGG | 0.324795 | 7_3:+63809212 | Msa1116170:CDS |
| GATATTGTTACAGTATTTCA+TGG | 0.327289 | 7_3:+63809329 | Msa1116170:CDS |
| AAAATGATATATTGCTTTCA+AGG | 0.374040 | 7_3:-63810403 | None:intergenic |
| TCATAAATATTGTTGGCAAT+TGG | 0.381390 | 7_3:+63809980 | Msa1116170:CDS |
| ACACATTTCATAAATATTGT+TGG | 0.395209 | 7_3:+63809973 | Msa1116170:CDS |
| CTCAGATTTATACCTTTCAC+TGG | 0.395474 | 7_3:+63809190 | Msa1116170:CDS |
| GTAACAACCACATGCACTAT+AGG | 0.403608 | 7_3:-63810372 | None:intergenic |
| CAGCTTGGATATGGTGACTT+TGG | 0.407331 | 7_3:+63809145 | Msa1116170:intron |
| GACATGTGAATTAAACAGAT+TGG | 0.420515 | 7_3:+63809902 | Msa1116170:CDS |
| CTTGTAGAATTAAAGAAAGT+TGG | 0.426464 | 7_3:+63810048 | Msa1116170:CDS |
| TATGCTAGCGGCGAAGTTCA+TGG | 0.428220 | 7_3:+63809523 | Msa1116170:CDS |
| AAAGATTTGGATAAAGGTGT+TGG | 0.457268 | 7_3:+63809218 | Msa1116170:CDS |
| GCTTACTATGCAAGAGTTGG+AGG | 0.469306 | 7_3:+63809873 | Msa1116170:CDS |
| TAAATATTGTTGGCAATTGG+AGG | 0.475426 | 7_3:+63809983 | Msa1116170:CDS |
| TAAATCTGAGCTTGCATCAT+CGG | 0.488124 | 7_3:-63809177 | None:intergenic |
| TCAAATTGAAAGGCCAATGC+AGG | 0.503145 | 7_3:+63810025 | Msa1116170:CDS |
| GATCGTATCTTTAAGTACTC+AGG | 0.504174 | 7_3:+63809389 | Msa1116170:CDS |
| AATGATAACAACTCTAATGA+AGG | 0.515269 | 7_3:-63807526 | None:intergenic |
| TTAATTCTACAAGCCTGCAT+TGG | 0.523085 | 7_3:-63810038 | None:intergenic |
| CATGATTGCAATTACAAACA+AGG | 0.524001 | 7_3:-63810295 | None:intergenic |
| CTGAACTGATCTCTCAAGAA+GGG | 0.524272 | 7_3:-63809270 | None:intergenic |
| TCTTTGAATTCATTTAATTG+TGG | 0.526056 | 7_3:-63810152 | None:intergenic |
| TCTGAACTGATCTCTCAAGA+AGG | 0.529138 | 7_3:-63809271 | None:intergenic |
| TGACCTCACTTAATGTGCAC+CGG | 0.530942 | 7_3:+63809483 | Msa1116170:CDS |
| TGTTGTGGCACACATATATG+TGG | 0.538379 | 7_3:+63809430 | Msa1116170:CDS |
| TAGAAACACTTCAAATTGAA+AGG | 0.539163 | 7_3:+63810015 | Msa1116170:CDS |
| AATGCTTACTATGCAAGAGT+TGG | 0.539995 | 7_3:+63809870 | Msa1116170:CDS |
| ATATTGTTGGCAATTGGAGG+AGG | 0.543541 | 7_3:+63809986 | Msa1116170:CDS |
| ATTACAAACAAGGGAAAAGC+AGG | 0.544034 | 7_3:-63810285 | None:intergenic |
| GGATAGATTACTTCAGCAAA+CGG | 0.544759 | 7_3:+63809451 | Msa1116170:CDS |
| AATCTTTAAGCCCCAGTGAA+AGG | 0.550301 | 7_3:-63809202 | None:intergenic |
| AAGAAACTCACAAATTATGA+AGG | 0.550862 | 7_3:-63807549 | None:intergenic |
| CTTCGCCGCTAGCATAATGC+TGG | 0.553964 | 7_3:-63809516 | None:intergenic |
| TAAAGGTGTTGGAGTTCCGC+GGG | 0.560704 | 7_3:+63809229 | Msa1116170:CDS |
| TCAGATTTATACCTTTCACT+GGG | 0.561119 | 7_3:+63809191 | Msa1116170:CDS |
| ATAAAGGTGTTGGAGTTCCG+CGG | 0.563652 | 7_3:+63809228 | Msa1116170:CDS |
| GCAATTGTGGAAGCACATGA+AGG | 0.569004 | 7_3:-63810086 | None:intergenic |
| ACACTACCATCTTGCAATTG+TGG | 0.572742 | 7_3:-63810099 | None:intergenic |
| TTGGTTTCCTATAGTGCATG+TGG | 0.579634 | 7_3:+63810365 | Msa1116170:three_prime_UTR |
| ATGATTGCAATTACAAACAA+GGG | 0.583457 | 7_3:-63810294 | None:intergenic |
| TAATGCTGGTTATCAGAAGC+CGG | 0.589204 | 7_3:-63809502 | None:intergenic |
| GATGAAACTTTCATCCCTTG+CGG | 0.596220 | 7_3:+63810336 | Msa1116170:three_prime_UTR |
| TGTTGGCAATTGGAGGAGGA+AGG | 0.604021 | 7_3:+63809990 | Msa1116170:CDS |
| CAATTGTGGAAGCACATGAA+GGG | 0.617190 | 7_3:-63810085 | None:intergenic |
| GTGCTTCCACAATTGCAAGA+TGG | 0.623442 | 7_3:+63810093 | Msa1116170:CDS |
| GGAAACCAAAACAAACCGCA+AGG | 0.630708 | 7_3:-63810351 | None:intergenic |
| GTGCCACAACAAAACATGAC+GGG | 0.636429 | 7_3:-63809418 | None:intergenic |
| TACTTACGAAGACTCAAAGT+AGG | 0.637029 | 7_3:-63809362 | None:intergenic |
| TGTGCCACAACAAAACATGA+CGG | 0.640477 | 7_3:-63809419 | None:intergenic |
| GATAACCAGCATTATGCTAG+CGG | 0.654270 | 7_3:+63809511 | Msa1116170:CDS |
| TTGTTTGTTTCTACACACAG+TGG | 0.675962 | 7_3:-63807378 | None:intergenic |
| AACAGAAATGATACATTGCG+TGG | 0.676271 | 7_3:-63810129 | None:intergenic |
| AAGCCGGTGCACATTAAGTG+AGG | 0.679082 | 7_3:-63809486 | None:intergenic |
| GAAACCAAAACAAACCGCAA+GGG | 0.680921 | 7_3:-63810350 | None:intergenic |
| GAGAGAAGTGACAAAACCCG+CGG | 0.721682 | 7_3:-63809245 | None:intergenic |
| CAGATTTATACCTTTCACTG+GGG | 0.725959 | 7_3:+63809192 | Msa1116170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAGAATTTAAAATTCT+AGG | + | chr7_3:63808700-63808719 | Msa1116170:intron | 10.0% |
| !! | TCTAATATTTAAATATTTGT+GGG | + | chr7_3:63809643-63809662 | Msa1116170:intron | 10.0% |
| !!! | TATCTTTATTTATTTTCATG+TGG | + | chr7_3:63807627-63807646 | Msa1116170:intron | 15.0% |
| !! | ATAAATCCTTATAAACTTAT+AGG | + | chr7_3:63808555-63808574 | Msa1116170:intron | 15.0% |
| !! | ATTACATAAAATATTGTGTT+TGG | + | chr7_3:63808659-63808678 | Msa1116170:intron | 15.0% |
| !! | GTCTAATATTTAAATATTTG+TGG | + | chr7_3:63809642-63809661 | Msa1116170:intron | 15.0% |
| !!! | AATTCAACCATATTTTTTTA+AGG | + | chr7_3:63810205-63810224 | Msa1116170:three_prime_UTR | 15.0% |
| !!! | ATTTTGATATTTTTCTGATT+AGG | + | chr7_3:63810421-63810440 | Msa1116170:three_prime_UTR | 15.0% |
| !! | ATCAAAACAAACACTAAAAT+GGG | - | chr7_3:63807689-63807708 | None:intergenic | 20.0% |
| !!! | ATTTCTTCTTTTTTGTTTTC+TGG | + | chr7_3:63807713-63807732 | Msa1116170:intron | 20.0% |
| !!! | TTTCTTCTTTTTTGTTTTCT+GGG | + | chr7_3:63807714-63807733 | Msa1116170:intron | 20.0% |
| !! | ATAATAACAATGAGCAAATT+TGG | + | chr7_3:63807894-63807913 | Msa1116170:intron | 20.0% |
| !! | AAAAAAAAAATCCTTTGATC+TGG | - | chr7_3:63808153-63808172 | None:intergenic | 20.0% |
| !!! | AGATCAAAGGATTTTTTTTT+TGG | + | chr7_3:63808152-63808171 | Msa1116170:intron | 20.0% |
| !!! | AAGGATTTTATAACATAACA+AGG | + | chr7_3:63808325-63808344 | Msa1116170:intron | 20.0% |
| !!! | AGGATTTTATAACATAACAA+GGG | + | chr7_3:63808326-63808345 | Msa1116170:intron | 20.0% |
| !!! | ACAACCAAAATTTTAAATCA+CGG | + | chr7_3:63809718-63809737 | Msa1116170:intron | 20.0% |
| !!! | AACATGTTTTAATATTGCTA+AGG | - | chr7_3:63809754-63809773 | None:intergenic | 20.0% |
| !! | ACACATTTCATAAATATTGT+TGG | + | chr7_3:63809973-63809992 | Msa1116170:CDS | 20.0% |
| !! | TCTTTGAATTCATTTAATTG+TGG | - | chr7_3:63810155-63810174 | None:intergenic | 20.0% |
| !!! | AAAGTGTCCTTAAAAAAATA+TGG | - | chr7_3:63810215-63810234 | None:intergenic | 20.0% |
| !! | AAAATGATATATTGCTTTCA+AGG | - | chr7_3:63810406-63810425 | None:intergenic | 20.0% |
| !!! | CCATCTTTGTTTTCTTTTTT+TGG | - | chr7_3:63807410-63807429 | None:intergenic | 25.0% |
| ! | CCAAAAAAAGAAAACAAAGA+TGG | + | chr7_3:63807407-63807426 | Msa1116170:five_prime_UTR | 25.0% |
| ! | AATGATAACAACTCTAATGA+AGG | - | chr7_3:63807529-63807548 | None:intergenic | 25.0% |
| ! | AAGAAACTCACAAATTATGA+AGG | - | chr7_3:63807552-63807571 | None:intergenic | 25.0% |
| ! | CATCAAAACAAACACTAAAA+TGG | - | chr7_3:63807690-63807709 | None:intergenic | 25.0% |
| !!! | CATTTTAGTGTTTGTTTTGA+TGG | + | chr7_3:63807688-63807707 | Msa1116170:intron | 25.0% |
| !!! | AAATTTATCTCTTTGAGATC+TGG | + | chr7_3:63807857-63807876 | Msa1116170:intron | 25.0% |
| !!! | AATTTATCTCTTTGAGATCT+GGG | + | chr7_3:63807858-63807877 | Msa1116170:intron | 25.0% |
| !! | TTGGTATGTAATCTTTTTGT+TGG | + | chr7_3:63807913-63807932 | Msa1116170:intron | 25.0% |
| ! | ATGAAAGGTAACTTTATGTT+TGG | - | chr7_3:63808106-63808125 | None:intergenic | 25.0% |
| ! | AACATAAAGTTACCTTTCAT+AGG | + | chr7_3:63808106-63808125 | Msa1116170:intron | 25.0% |
| !! | GATACTTCTTATCTAAAACA+TGG | - | chr7_3:63808182-63808201 | None:intergenic | 25.0% |
| ! | AACTAATGACTAATCTTTGT+TGG | + | chr7_3:63808221-63808240 | Msa1116170:intron | 25.0% |
| ! | ACTAATGACTAATCTTTGTT+GGG | + | chr7_3:63808222-63808241 | Msa1116170:intron | 25.0% |
| !!! | GTATGTGTCACAATTTTTTA+GGG | + | chr7_3:63808370-63808389 | Msa1116170:intron | 25.0% |
| ! | TAAAATATTGTGTTTGGATG+AGG | + | chr7_3:63808665-63808684 | Msa1116170:intron | 25.0% |
| ! | GATATTGTTACAGTATTTCA+TGG | + | chr7_3:63809329-63809348 | Msa1116170:CDS | 25.0% |
| ! | AAATATTTGTGGGACATATA+TGG | + | chr7_3:63809653-63809672 | Msa1116170:intron | 25.0% |
| !! | CAACCAAAATTTTAAATCAC+GGG | + | chr7_3:63809719-63809738 | Msa1116170:intron | 25.0% |
| ! | TGTTAACATTGTTCTCTATT+TGG | + | chr7_3:63809829-63809848 | Msa1116170:intron | 25.0% |
| ! | TCATAAATATTGTTGGCAAT+TGG | + | chr7_3:63809980-63809999 | Msa1116170:CDS | 25.0% |
| ! | TAGAAACACTTCAAATTGAA+AGG | + | chr7_3:63810015-63810034 | Msa1116170:CDS | 25.0% |
| ! | CTTGTAGAATTAAAGAAAGT+TGG | + | chr7_3:63810048-63810067 | Msa1116170:CDS | 25.0% |
| ! | ATGATTGCAATTACAAACAA+GGG | - | chr7_3:63810297-63810316 | None:intergenic | 25.0% |
| !! | CTTTCTAAAATCACTTGCAT+TGG | + | chr7_3:63807590-63807609 | Msa1116170:intron | 30.0% |
| !!! | TTCTTTTTTGTTTTCTGGGT+GGG | + | chr7_3:63807718-63807737 | Msa1116170:intron | 30.0% |
| ! | TTGGAGAGATTATTGTTGTT+TGG | + | chr7_3:63807932-63807951 | Msa1116170:intron | 30.0% |
| !! | TTGTTGTTGATGTTGATTTG+TGG | + | chr7_3:63807999-63808018 | Msa1116170:intron | 30.0% |
| !! | TTGATGTTGATTTGTGGTTT+GGG | + | chr7_3:63808005-63808024 | Msa1116170:intron | 30.0% |
| ATCTAAGTAGCTCCTTAATT+AGG | - | chr7_3:63808079-63808098 | None:intergenic | 30.0% | |
| AAACATAGGATTCCTATGAA+AGG | - | chr7_3:63808121-63808140 | None:intergenic | 30.0% | |
| TCTGGTGTACATAAAAACAT+AGG | - | chr7_3:63808135-63808154 | None:intergenic | 30.0% | |
| ! | TTTTATGTACACCAGATCAA+AGG | + | chr7_3:63808139-63808158 | Msa1116170:intron | 30.0% |
| GTTAAACGACAATTAATACG+TGG | - | chr7_3:63808204-63808223 | None:intergenic | 30.0% | |
| CTAATGACTAATCTTTGTTG+GGG | + | chr7_3:63808223-63808242 | Msa1116170:intron | 30.0% | |
| TGAATGGAGAAAACTCAATT+GGG | - | chr7_3:63808282-63808301 | None:intergenic | 30.0% | |
| AATCAGAGATCGAAGATTAA+AGG | + | chr7_3:63808306-63808325 | Msa1116170:intron | 30.0% | |
| !!! | CGTATGTGTCACAATTTTTT+AGG | + | chr7_3:63808369-63808388 | Msa1116170:intron | 30.0% |
| CCAACACCTATAAGTTTATA+AGG | - | chr7_3:63808564-63808583 | None:intergenic | 30.0% | |
| CCTTATAAACTTATAGGTGT+TGG | + | chr7_3:63808561-63808580 | Msa1116170:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | - | chr7_3:63808751-63808770 | None:intergenic | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | - | chr7_3:63808752-63808771 | None:intergenic | 30.0% | |
| ! | ACAATAACTAAGAGTGTGTT+TGG | - | chr7_3:63808868-63808887 | None:intergenic | 30.0% |
| ! | TGCACATTTTCAACACTATT+GGG | - | chr7_3:63809097-63809116 | None:intergenic | 30.0% |
| ! | ATGCACATTTTCAACACTAT+TGG | - | chr7_3:63809098-63809117 | None:intergenic | 30.0% |
| TCAGATTTATACCTTTCACT+GGG | + | chr7_3:63809191-63809210 | Msa1116170:CDS | 30.0% | |
| ! | AAAGATTTGGATAAAGGTGT+TGG | + | chr7_3:63809218-63809237 | Msa1116170:CDS | 30.0% |
| !! | CTGTTTGTTTTTCCTAATGA+TGG | + | chr7_3:63809604-63809623 | Msa1116170:intron | 30.0% |
| !! | TTTCCTAATGATGGATATCT+TGG | + | chr7_3:63809613-63809632 | Msa1116170:intron | 30.0% |
| !! | TCACCCGTGATTTAAAATTT+TGG | - | chr7_3:63809725-63809744 | None:intergenic | 30.0% |
| GACATGTGAATTAAACAGAT+TGG | + | chr7_3:63809902-63809921 | Msa1116170:CDS | 30.0% | |
| ! | TTGGAAATGAGCTTTTTGTT+TGG | + | chr7_3:63809921-63809940 | Msa1116170:CDS | 30.0% |
| ! | TGGTATAGATTTTAGACTTC+AGG | + | chr7_3:63809941-63809960 | Msa1116170:CDS | 30.0% |
| TAAATATTGTTGGCAATTGG+AGG | + | chr7_3:63809983-63810002 | Msa1116170:CDS | 30.0% | |
| CATGATTGCAATTACAAACA+AGG | - | chr7_3:63810298-63810317 | None:intergenic | 30.0% | |
| !! | TTGTTTGTTTCTACACACAG+TGG | - | chr7_3:63807381-63807400 | None:intergenic | 35.0% |
| !!! | CTTCTTTTTTGTTTTCTGGG+TGG | + | chr7_3:63807717-63807736 | Msa1116170:intron | 35.0% |
| !!! | AATCTTTGCTTTTTGACTCC+TGG | + | chr7_3:63807816-63807835 | Msa1116170:intron | 35.0% |
| !!! | ATCTTTGCTTTTTGACTCCT+GGG | + | chr7_3:63807817-63807836 | Msa1116170:intron | 35.0% |
| !! | TTGTTGTTTGGAGTTTGTAG+TGG | + | chr7_3:63807944-63807963 | Msa1116170:intron | 35.0% |
| ! | TGTTGTTTGGAGTTTGTAGT+GGG | + | chr7_3:63807945-63807964 | Msa1116170:intron | 35.0% |
| ! | GAAATTTGGTTCAACTAGAG+TGG | + | chr7_3:63807974-63807993 | Msa1116170:intron | 35.0% |
| !! | GTTGATGTTGATTTGTGGTT+TGG | + | chr7_3:63808004-63808023 | Msa1116170:intron | 35.0% |
| GCGTTATTGATGCCTAATTA+AGG | + | chr7_3:63808064-63808083 | Msa1116170:intron | 35.0% | |
| GTGAATGGAGAAAACTCAAT+TGG | - | chr7_3:63808283-63808302 | None:intergenic | 35.0% | |
| !!! | TGTGTCACAATTTTTTAGGG+CGG | + | chr7_3:63808373-63808392 | Msa1116170:intron | 35.0% |
| GAAATGGAGAATTTCTTCCA+TGG | + | chr7_3:63808429-63808448 | Msa1116170:intron | 35.0% | |
| TCACTCATTGAACTTCTACA+AGG | - | chr7_3:63808587-63808606 | None:intergenic | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr7_3:63808673-63808692 | Msa1116170:intron | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | - | chr7_3:63808770-63808789 | None:intergenic | 35.0% | |
| TGAATTCCATTGTTTGGATG+GGG | - | chr7_3:63808791-63808810 | None:intergenic | 35.0% | |
| GTGAATTCCATTGTTTGGAT+GGG | - | chr7_3:63808792-63808811 | None:intergenic | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr7_3:63808797-63808816 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr7_3:63808814-63808833 | None:intergenic | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr7_3:63808832-63808851 | None:intergenic | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | - | chr7_3:63808833-63808852 | None:intergenic | 35.0% | |
| ! | AACTAAGAGTGTGTTTGGAT+GGG | - | chr7_3:63808863-63808882 | None:intergenic | 35.0% |
| ! | TAACTAAGAGTGTGTTTGGA+TGG | - | chr7_3:63808864-63808883 | None:intergenic | 35.0% |
| TCTTTCTCTATATGTGCTTG+CGG | + | chr7_3:63808915-63808934 | Msa1116170:intron | 35.0% | |
| TCGTGTCATGATTTAGAGAA+GGG | - | chr7_3:63808974-63808993 | None:intergenic | 35.0% | |
| ATCGTGTCATGATTTAGAGA+AGG | - | chr7_3:63808975-63808994 | None:intergenic | 35.0% | |
| ! | CACATTTTCAACACTATTGG+GGG | - | chr7_3:63809095-63809114 | None:intergenic | 35.0% |
| ! | GCACATTTTCAACACTATTG+GGG | - | chr7_3:63809096-63809115 | None:intergenic | 35.0% |
| TTGTACATTTCTTTGCAGCT+TGG | + | chr7_3:63809130-63809149 | Msa1116170:intron | 35.0% | |
| ATTTCTTTGCAGCTTGGATA+TGG | + | chr7_3:63809136-63809155 | Msa1116170:intron | 35.0% | |
| TAAATCTGAGCTTGCATCAT+CGG | - | chr7_3:63809180-63809199 | None:intergenic | 35.0% | |
| CTCAGATTTATACCTTTCAC+TGG | + | chr7_3:63809190-63809209 | Msa1116170:CDS | 35.0% | |
| CAGATTTATACCTTTCACTG+GGG | + | chr7_3:63809192-63809211 | Msa1116170:CDS | 35.0% | |
| GGGCTTAAAGATTTGGATAA+AGG | + | chr7_3:63809212-63809231 | Msa1116170:CDS | 35.0% | |
| TACTTACGAAGACTCAAAGT+AGG | - | chr7_3:63809365-63809384 | None:intergenic | 35.0% | |
| GATCGTATCTTTAAGTACTC+AGG | + | chr7_3:63809389-63809408 | Msa1116170:CDS | 35.0% | |
| GGATAGATTACTTCAGCAAA+CGG | + | chr7_3:63809451-63809470 | Msa1116170:CDS | 35.0% | |
| ACACCAAGATATCCATCATT+AGG | - | chr7_3:63809619-63809638 | None:intergenic | 35.0% | |
| AATGCTTACTATGCAAGAGT+TGG | + | chr7_3:63809870-63809889 | Msa1116170:CDS | 35.0% | |
| TTAATTCTACAAGCCTGCAT+TGG | - | chr7_3:63810041-63810060 | None:intergenic | 35.0% | |
| AACAGAAATGATACATTGCG+TGG | - | chr7_3:63810132-63810151 | None:intergenic | 35.0% | |
| CAGAAAAAGCTACAGAGAAA+TGG | - | chr7_3:63810255-63810274 | None:intergenic | 35.0% | |
| ATTACAAACAAGGGAAAAGC+AGG | - | chr7_3:63810288-63810307 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTTTTCTGGGTGGG+AGG | + | chr7_3:63807721-63807740 | Msa1116170:intron | 40.0% |
| !!! | TTTTTGTTTTCTGGGTGGGA+GGG | + | chr7_3:63807722-63807741 | Msa1116170:intron | 40.0% |
| !!! | TCTTTGCTTTTTGACTCCTG+GGG | + | chr7_3:63807818-63807837 | Msa1116170:intron | 40.0% |
| ! | GTTGTTTGGAGTTTGTAGTG+GGG | + | chr7_3:63807946-63807965 | Msa1116170:intron | 40.0% |
| ! | GTAGTGGGGAGATAGAAATT+TGG | + | chr7_3:63807960-63807979 | Msa1116170:intron | 40.0% |
| TTGAGATCTAGGCACTTGTT+GGG | + | chr7_3:63808037-63808056 | Msa1116170:intron | 40.0% | |
| ATCTTTGTTGGGGAACCTAT+TGG | + | chr7_3:63808233-63808252 | Msa1116170:intron | 40.0% | |
| ! | AACCTATTGGTTACTCAAGG+TGG | + | chr7_3:63808246-63808265 | Msa1116170:intron | 40.0% |
| ATCCACCTTGAGTAACCAAT+AGG | - | chr7_3:63808251-63808270 | None:intergenic | 40.0% | |
| TGGAGAAAACTCAATTGGGA+GGG | - | chr7_3:63808278-63808297 | None:intergenic | 40.0% | |
| ATGGAGAAAACTCAATTGGG+AGG | - | chr7_3:63808279-63808298 | None:intergenic | 40.0% | |
| CGATCTCTGATTCTTGTGAA+TGG | - | chr7_3:63808298-63808317 | None:intergenic | 40.0% | |
| !! | CTAACTCACGAGAGTGTTTA+TGG | + | chr7_3:63808518-63808537 | Msa1116170:intron | 40.0% |
| GAGGGAATTCAAATACTGTG+AGG | - | chr7_3:63808733-63808752 | None:intergenic | 40.0% | |
| GAATTCCATTGTTTGGATGG+GGG | - | chr7_3:63808790-63808809 | None:intergenic | 40.0% | |
| GGTGAATTCCATTGTTTGGA+TGG | - | chr7_3:63808793-63808812 | None:intergenic | 40.0% | |
| ! | ACTAAGAGTGTGTTTGGATG+GGG | - | chr7_3:63808862-63808881 | None:intergenic | 40.0% |
| ! | CTTGCGGATTTTCTCCAAAT+TGG | + | chr7_3:63808931-63808950 | Msa1116170:intron | 40.0% |
| AGTGAAGCTTAGAGCCAATT+TGG | - | chr7_3:63808948-63808967 | None:intergenic | 40.0% | |
| AATCTTTAAGCCCCAGTGAA+AGG | - | chr7_3:63809205-63809224 | None:intergenic | 40.0% | |
| TTCACTGGGGCTTAAAGATT+TGG | + | chr7_3:63809205-63809224 | Msa1116170:CDS | 40.0% | |
| CTGAACTGATCTCTCAAGAA+GGG | - | chr7_3:63809273-63809292 | None:intergenic | 40.0% | |
| TCTGAACTGATCTCTCAAGA+AGG | - | chr7_3:63809274-63809293 | None:intergenic | 40.0% | |
| TGTGCCACAACAAAACATGA+CGG | - | chr7_3:63809422-63809441 | None:intergenic | 40.0% | |
| TGTTGTGGCACACATATATG+TGG | + | chr7_3:63809430-63809449 | Msa1116170:CDS | 40.0% | |
| ! | TAATGCTGGTTATCAGAAGC+CGG | - | chr7_3:63809505-63809524 | None:intergenic | 40.0% |
| GATAACCAGCATTATGCTAG+CGG | + | chr7_3:63809511-63809530 | Msa1116170:CDS | 40.0% | |
| ATGATGCGTAAGTGCAAGTT+TGG | + | chr7_3:63809546-63809565 | Msa1116170:intron | 40.0% | |
| ATATTGTTGGCAATTGGAGG+AGG | + | chr7_3:63809986-63810005 | Msa1116170:CDS | 40.0% | |
| TCAAATTGAAAGGCCAATGC+AGG | + | chr7_3:63810025-63810044 | Msa1116170:CDS | 40.0% | |
| ! | CAATTGTGGAAGCACATGAA+GGG | - | chr7_3:63810088-63810107 | None:intergenic | 40.0% |
| ACACTACCATCTTGCAATTG+TGG | - | chr7_3:63810102-63810121 | None:intergenic | 40.0% | |
| GATGAAACTTTCATCCCTTG+CGG | + | chr7_3:63810336-63810355 | Msa1116170:three_prime_UTR | 40.0% | |
| GAAACCAAAACAAACCGCAA+GGG | - | chr7_3:63810353-63810372 | None:intergenic | 40.0% | |
| TTGGTTTCCTATAGTGCATG+TGG | + | chr7_3:63810365-63810384 | Msa1116170:three_prime_UTR | 40.0% | |
| GTAACAACCACATGCACTAT+AGG | - | chr7_3:63810375-63810394 | None:intergenic | 40.0% | |
| GGACAAGAGACTTGAGATCT+AGG | + | chr7_3:63808026-63808045 | Msa1116170:intron | 45.0% | |
| CTTGAGATCTAGGCACTTGT+TGG | + | chr7_3:63808036-63808055 | Msa1116170:intron | 45.0% | |
| ! | GGGAACCTATTGGTTACTCA+AGG | + | chr7_3:63808243-63808262 | Msa1116170:intron | 45.0% |
| GGAGAAAACTCAATTGGGAG+GGG | - | chr7_3:63808277-63808296 | None:intergenic | 45.0% | |
| !!! | GTCACAATTTTTTAGGGCGG+AGG | + | chr7_3:63808376-63808395 | Msa1116170:intron | 45.0% |
| !!! | ATTTTTTAGGGCGGAGGAGA+TGG | + | chr7_3:63808382-63808401 | Msa1116170:intron | 45.0% |
| TGAGTTGTGAGTGAGGTGAT+TGG | + | chr7_3:63808407-63808426 | Msa1116170:intron | 45.0% | |
| GTGAGTGAGGTGATTGGAAA+TGG | + | chr7_3:63808413-63808432 | Msa1116170:intron | 45.0% | |
| !! | ATCAAGCGTCGACTTAACCA+TGG | - | chr7_3:63808449-63808468 | None:intergenic | 45.0% |
| TGGTTAAGTCGACGCTTGAT+AGG | + | chr7_3:63808449-63808468 | Msa1116170:intron | 45.0% | |
| ACATTCCCCCATCCAAACAA+TGG | + | chr7_3:63808782-63808801 | Msa1116170:intron | 45.0% | |
| TTTGGATGGGGGAATGTTGA+GGG | - | chr7_3:63808850-63808869 | None:intergenic | 45.0% | |
| ! | CTAAGAGTGTGTTTGGATGG+GGG | - | chr7_3:63808861-63808880 | None:intergenic | 45.0% |
| CAGCTTGGATATGGTGACTT+TGG | + | chr7_3:63809145-63809164 | Msa1116170:intron | 45.0% | |
| !! | ATAAAGGTGTTGGAGTTCCG+CGG | + | chr7_3:63809228-63809247 | Msa1116170:CDS | 45.0% |
| GTGCCACAACAAAACATGAC+GGG | - | chr7_3:63809421-63809440 | None:intergenic | 45.0% | |
| TGACCTCACTTAATGTGCAC+CGG | + | chr7_3:63809483-63809502 | Msa1116170:CDS | 45.0% | |
| GCTTACTATGCAAGAGTTGG+AGG | + | chr7_3:63809873-63809892 | Msa1116170:CDS | 45.0% | |
| ! | GCAATTGTGGAAGCACATGA+AGG | - | chr7_3:63810089-63810108 | None:intergenic | 45.0% |
| GTGCTTCCACAATTGCAAGA+TGG | + | chr7_3:63810093-63810112 | Msa1116170:CDS | 45.0% | |
| !! | TCATCCCTTGCGGTTTGTTT+TGG | + | chr7_3:63810346-63810365 | Msa1116170:three_prime_UTR | 45.0% |
| GGAAACCAAAACAAACCGCA+AGG | - | chr7_3:63810354-63810373 | None:intergenic | 45.0% | |
| !!! | TTGCTTTTTGACTCCTGGGG+TGG | + | chr7_3:63807821-63807840 | Msa1116170:intron | 50.0% |
| !! | TTTTTGACTCCTGGGGTGGT+GGG | + | chr7_3:63807825-63807844 | Msa1116170:intron | 50.0% |
| GATGGAGTGAGTTGTGAGTG+AGG | + | chr7_3:63808400-63808419 | Msa1116170:intron | 50.0% | |
| GTTTGGATGGGGGAATGTTG+AGG | - | chr7_3:63808851-63808870 | None:intergenic | 50.0% | |
| !! | TAAAGGTGTTGGAGTTCCGC+GGG | + | chr7_3:63809229-63809248 | Msa1116170:CDS | 50.0% |
| GAGAGAAGTGACAAAACCCG+CGG | - | chr7_3:63809248-63809267 | None:intergenic | 50.0% | |
| !! | CAGCCCGTCATGTTTTGTTG+TGG | + | chr7_3:63809415-63809434 | Msa1116170:CDS | 50.0% |
| AAGCCGGTGCACATTAAGTG+AGG | - | chr7_3:63809489-63809508 | None:intergenic | 50.0% | |
| TATGCTAGCGGCGAAGTTCA+TGG | + | chr7_3:63809523-63809542 | Msa1116170:CDS | 50.0% | |
| TGTTGGCAATTGGAGGAGGA+AGG | + | chr7_3:63809990-63810009 | Msa1116170:CDS | 50.0% | |
| ! | TTTTCTGGGTGGGAGGGTTC+AGG | + | chr7_3:63807728-63807747 | Msa1116170:intron | 55.0% |
| TTTCTGGGTGGGAGGGTTCA+GGG | + | chr7_3:63807729-63807748 | Msa1116170:intron | 55.0% | |
| !! | CTTTTTGACTCCTGGGGTGG+TGG | + | chr7_3:63807824-63807843 | Msa1116170:intron | 55.0% |
| !! | TTTTGACTCCTGGGGTGGTG+GGG | + | chr7_3:63807826-63807845 | Msa1116170:intron | 55.0% |
| CTTCGCCGCTAGCATAATGC+TGG | - | chr7_3:63809519-63809538 | None:intergenic | 55.0% | |
| !! | TGACTCCTGGGGTGGTGGGG+TGG | + | chr7_3:63807829-63807848 | Msa1116170:intron | 70.0% |
| CACTTCCACCCCACCACCCC+AGG | - | chr7_3:63807837-63807856 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63807314 | 63810468 | 63807314 | ID=Msa1116170;Name=Msa1116170 |
| chr7_3 | mRNA | 63807314 | 63810468 | 63807314 | ID=Msa1116170-mRNA-1;Parent=Msa1116170;Name=Msa1116170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=254|1|1|1|0.5|0.33|3|350|218 |
| chr7_3 | exon | 63807314 | 63807560 | 63807314 | ID=Msa1116170-mRNA-1:exon:15015;Parent=Msa1116170-mRNA-1 |
| chr7_3 | exon | 63809148 | 63809552 | 63809148 | ID=Msa1116170-mRNA-1:exon:15016;Parent=Msa1116170-mRNA-1 |
| chr7_3 | exon | 63809860 | 63810468 | 63809860 | ID=Msa1116170-mRNA-1:exon:15017;Parent=Msa1116170-mRNA-1 |
| chr7_3 | five_prime_UTR | 63807314 | 63807560 | 63807314 | ID=Msa1116170-mRNA-1:five_prime_utr;Parent=Msa1116170-mRNA-1 |
| chr7_3 | five_prime_UTR | 63809148 | 63809154 | 63809148 | ID=Msa1116170-mRNA-1:five_prime_utr;Parent=Msa1116170-mRNA-1 |
| chr7_3 | CDS | 63809155 | 63809552 | 63809155 | ID=Msa1116170-mRNA-1:cds;Parent=Msa1116170-mRNA-1 |
| chr7_3 | CDS | 63809860 | 63810118 | 63809860 | ID=Msa1116170-mRNA-1:cds;Parent=Msa1116170-mRNA-1 |
| chr7_3 | three_prime_UTR | 63810119 | 63810468 | 63810119 | ID=Msa1116170-mRNA-1:three_prime_utr;Parent=Msa1116170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
