AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137640 MtrunA17_Chr1g0209921 97.388 268 7 0 1 268 1 268 0.0 549
Msa0137640 MtrunA17_Chr2g0314791 64.000 350 114 5 13 354 1 346 1.22e-162 459
Msa0137640 MtrunA17_Chr2g0314801 47.207 358 165 9 15 353 1 353 3.55e-110 325
Msa0137640 MtrunA17_Chr3g0097891 48.138 349 158 10 22 354 10 351 4.46e-107 318
Msa0137640 MtrunA17_Chr2g0283581 48.780 328 149 10 39 353 37 358 2.03e-100 301
Msa0137640 MtrunA17_Chr4g0045941 45.584 351 170 11 17 354 9 351 2.48e-99 298
Msa0137640 MtrunA17_Chr4g0045951 46.429 336 162 10 32 354 33 363 6.43e-97 292
Msa0137640 MtrunA17_Chr3g0085071 45.045 333 163 9 35 353 37 363 4.14e-95 288
Msa0137640 MtrunA17_Chr3g0085081 45.266 338 163 10 31 353 18 348 2.23e-94 285
Msa0137640 MtrunA17_Chr5g0413851 45.783 332 160 10 39 356 37 362 6.96e-94 284
Msa0137640 MtrunA17_Chr2g0325481 46.526 331 152 11 41 355 47 368 1.38e-93 284
Msa0137640 MtrunA17_Chr3g0091031 44.510 337 167 9 31 353 18 348 2.04e-93 283
Msa0137640 MtrunA17_Chr4g0041011 45.732 328 155 10 41 353 44 363 1.53e-91 278
Msa0137640 MtrunA17_Chr3g0105301 41.329 346 169 11 39 354 36 377 4.80e-85 262
Msa0137640 MtrunA17_Chr5g0430371 41.341 358 169 11 34 354 47 400 1.65e-83 259
Msa0137640 MtrunA17_Chr4g0068111 39.884 346 170 11 43 354 113 454 1.54e-78 248
Msa0137640 MtrunA17_Chr1g0171171 39.759 332 175 10 41 353 50 375 9.11e-78 243
Msa0137640 MtrunA17_Chr7g0258851 38.682 349 178 12 43 358 247 592 1.25e-77 249
Msa0137640 MtrunA17_Chr1g0210771 40.361 332 172 12 42 353 57 382 4.52e-77 242
Msa0137640 MtrunA17_Chr1g0175671 39.420 345 173 12 43 354 169 510 4.91e-77 246
Msa0137640 MtrunA17_Chr7g0269991 39.759 332 171 11 44 350 137 464 3.90e-75 239
Msa0137640 MtrunA17_Chr4g0006991 36.127 346 185 10 42 353 84 427 1.03e-70 227
Msa0137640 MtrunA17_Chr4g0071391 36.888 347 185 12 42 357 107 450 3.68e-69 224
Msa0137640 MtrunA17_Chr1g0213281 38.261 345 176 11 44 354 175 516 1.39e-68 224
Msa0137640 MtrunA17_Chr5g0413271 36.070 341 184 11 42 354 143 477 2.33e-68 223
Msa0137640 MtrunA17_Chr8g0360521 33.333 345 195 9 44 356 71 412 6.75e-67 217
Msa0137640 MtrunA17_Chr3g0126021 36.364 341 188 12 39 354 124 460 2.25e-66 217
Msa0137640 MtrunA17_Chr8g0368461 35.196 358 181 12 43 354 177 529 2.43e-66 218
Msa0137640 MtrunA17_Chr7g0259711 37.006 354 185 13 41 359 88 438 4.19e-65 213
Msa0137640 MtrunA17_Chr3g0113671 35.429 350 188 10 42 355 104 451 8.78e-65 212
Msa0137640 MtrunA17_Chr4g0005481 34.682 346 193 8 39 353 103 446 2.31e-64 211
Msa0137640 MtrunA17_Chr7g0242701 34.670 349 188 10 41 353 83 427 2.95e-64 210
Msa0137640 MtrunA17_Chr1g0209931 93.750 96 6 0 267 362 6 101 4.45e-62 194
Msa0137640 MtrunA17_Chr2g0287901 38.150 346 175 12 44 354 97 438 1.04e-61 204
Msa0137640 MtrunA17_Chr3g0114101 35.143 350 181 11 44 354 89 431 6.25e-61 201
Msa0137640 MtrunA17_Chr8g0384151 36.391 338 182 13 42 354 88 417 1.61e-60 201
Msa0137640 MtrunA17_Chr4g0005491 31.868 364 206 10 30 354 48 408 2.01e-60 199
Msa0137640 MtrunA17_Chr5g0437291 33.994 353 192 11 42 355 163 513 2.39e-58 197
Msa0137640 MtrunA17_Chr5g0437601 33.333 345 194 10 44 354 83 425 1.95e-56 190
Msa0137640 MtrunA17_Chr7g0243301 30.899 356 204 10 39 355 59 411 1.13e-55 187
Msa0137640 MtrunA17_Chr1g0178081 30.854 363 181 14 17 358 33 346 3.85e-44 155
Msa0137640 MtrunA17_Chr1g0188191 31.044 364 181 15 44 353 234 581 4.20e-37 140
Msa0137640 MtrunA17_Chr6g0476041 27.793 367 189 14 44 353 167 514 2.86e-34 132
Msa0137640 MtrunA17_Chr4g0049421 28.011 357 200 15 44 354 48 393 3.26e-33 127
Msa0137640 MtrunA17_Chr6g0456681 27.528 356 211 12 39 353 59 408 1.19e-31 123
Msa0137640 MtrunA17_Chr5g0414061 28.409 352 211 12 40 353 90 438 2.12e-31 123
Msa0137640 MtrunA17_Chr2g0283851 29.444 360 189 18 45 353 56 401 7.10e-31 121
Msa0137640 MtrunA17_Chr6g0456691 27.966 354 203 13 42 353 76 419 9.02e-31 121
Msa0137640 MtrunA17_Chr8g0384421 28.490 351 203 13 42 353 131 472 3.83e-30 120
Msa0137640 MtrunA17_Chr5g0414091 28.142 366 212 15 32 353 73 431 3.91e-28 114
Msa0137640 MtrunA17_Chr6g0451321 27.374 358 218 13 33 353 105 457 4.78e-28 114
Msa0137640 MtrunA17_Chr6g0455901 25.648 347 214 11 43 349 70 412 6.36e-27 110
Msa0137640 MtrunA17_Chr3g0140371 27.778 360 209 15 44 361 18 368 1.18e-26 108
Msa0137640 MtrunA17_Chr7g0226991 27.424 361 212 11 42 359 55 408 2.36e-26 108
Msa0137640 MtrunA17_Chr8g0347321 26.944 360 208 16 41 355 92 441 1.01e-25 107
Msa0137640 MtrunA17_Chr4g0070341 27.066 351 208 12 42 353 130 471 4.87e-24 102
Msa0137640 MtrunA17_Chr8g0391481 27.374 358 208 13 40 353 23 372 7.56e-24 101
Msa0137640 MtrunA17_Chr5g0414041 27.401 354 206 15 44 353 87 433 8.12e-24 102
Msa0137640 MtrunA17_Chr7g0221291 42.478 113 63 2 23 135 58 168 1.28e-23 95.9
Msa0137640 MtrunA17_Chr8g0387921 25.281 356 216 14 43 355 73 421 3.11e-22 97.1
Msa0137640 MtrunA17_Chr7g0221271 44.118 102 51 2 35 134 70 167 3.53e-22 93.2
Msa0137640 MtrunA17_Chr5g0414051 42.727 110 55 3 31 134 56 163 1.61e-20 92.4
Msa0137640 MtrunA17_Chr3g0085101 40.952 105 51 2 229 322 1 105 1.57e-19 83.2
Msa0137640 MtrunA17_Chr5g0429211 43.421 76 42 1 100 175 194 268 2.28e-11 63.9
Msa0137640 MtrunA17_Chr2g0287931 34.188 117 64 5 106 209 2 118 2.36e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137640 AT1G78710.1 51.205 332 141 9 38 354 32 357 4.46e-116 341
Msa0137640 AT2G30900.1 47.706 327 152 8 44 354 43 366 1.00e-102 307
Msa0137640 AT1G29050.1 46.341 328 156 11 40 353 57 378 8.12e-96 290
Msa0137640 AT2G34070.1 46.769 325 152 10 44 353 65 383 1.34e-95 290
Msa0137640 AT3G14850.2 45.921 331 156 10 41 354 31 355 1.80e-94 286
Msa0137640 AT2G42570.1 46.246 333 157 10 39 356 42 367 9.75e-94 285
Msa0137640 AT2G31110.2 45.399 326 156 11 43 353 44 362 7.76e-91 277
Msa0137640 AT1G78710.2 44.582 323 123 9 38 354 25 297 9.75e-89 269
Msa0137640 AT3G54260.1 43.544 333 162 11 44 356 51 377 2.51e-82 256
Msa0137640 AT5G58600.1 42.105 342 161 12 44 354 66 401 1.21e-80 252
Msa0137640 AT2G30010.1 41.737 357 163 13 36 354 48 397 2.55e-80 251
Msa0137640 AT2G30010.2 41.737 357 163 13 36 354 91 440 8.62e-80 251
Msa0137640 AT3G62390.1 41.471 340 169 12 42 354 136 472 4.91e-79 250
Msa0137640 AT5G49340.1 38.506 348 172 10 44 354 100 442 1.95e-78 248
Msa0137640 AT2G30900.2 52.252 222 99 6 44 261 43 261 2.81e-74 231
Msa0137640 AT3G12060.1 38.150 346 178 11 42 354 194 536 2.62e-72 235
Msa0137640 AT5G20590.1 39.003 341 177 14 44 354 141 480 1.63e-71 231
Msa0137640 AT5G06700.1 36.994 346 182 13 42 354 253 595 9.54e-71 232
Msa0137640 AT5G01360.2 35.159 347 188 9 42 353 34 378 2.27e-70 225
Msa0137640 AT5G01360.1 35.159 347 188 9 42 353 90 434 1.15e-69 224
Msa0137640 AT1G60790.1 36.752 351 179 11 42 354 188 533 2.63e-69 227
Msa0137640 AT2G31110.3 47.845 232 111 8 43 271 44 268 3.14e-68 216
Msa0137640 AT1G73140.1 33.623 345 194 9 42 354 65 406 2.98e-67 218
Msa0137640 AT1G48880.1 37.685 337 183 11 39 354 110 440 2.28e-66 216
Msa0137640 AT2G34070.2 44.664 253 121 8 116 353 1 249 9.23e-65 206
Msa0137640 AT3G55990.1 35.143 350 189 9 42 355 138 485 1.17e-63 211
Msa0137640 AT5G06230.2 35.754 358 184 12 41 358 18 369 3.93e-62 203
Msa0137640 AT5G19160.1 37.535 357 177 16 44 359 99 450 4.02e-62 206
Msa0137640 AT3G14850.1 44.048 252 120 8 116 350 1 248 4.14e-62 199
Msa0137640 AT5G06230.1 35.754 358 184 12 41 358 59 410 8.39e-62 204
Msa0137640 AT3G06080.2 37.536 349 181 14 44 357 103 449 6.24e-61 203
Msa0137640 AT2G40160.2 34.819 359 175 12 44 354 77 424 2.29e-60 201
Msa0137640 AT2G40160.1 34.746 354 172 12 44 349 77 419 9.85e-60 199
Msa0137640 AT5G01620.2 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0137640 AT5G01620.1 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0137640 AT5G01620.3 32.394 355 200 11 34 353 108 457 2.14e-59 199
Msa0137640 AT2G40320.1 33.524 349 192 11 42 354 79 423 2.85e-57 192
Msa0137640 AT3G11570.1 36.420 324 174 11 66 358 102 424 3.69e-57 192
Msa0137640 AT2G40150.1 32.773 357 196 11 43 357 70 424 4.39e-57 192
Msa0137640 AT2G38320.1 32.955 352 196 12 41 354 56 405 6.66e-56 188
Msa0137640 AT3G11030.1 33.621 348 194 11 42 354 104 449 1.58e-55 188
Msa0137640 AT5G58600.2 44.298 228 118 8 44 266 66 289 1.77e-55 184
Msa0137640 AT3G62390.2 41.057 246 128 7 42 273 136 378 2.46e-55 187
Msa0137640 AT5G20590.2 39.241 237 129 8 44 266 141 376 1.44e-51 176
Msa0137640 AT2G38320.2 32.177 317 176 11 76 354 7 322 3.87e-46 160
Msa0137640 AT2G40160.3 36.475 244 124 6 44 266 77 310 2.26e-45 158
Msa0137640 AT5G19160.2 39.076 238 128 8 44 266 99 334 3.13e-45 159
Msa0137640 AT2G31110.1 41.905 210 103 7 159 353 9 214 3.47e-44 152
Msa0137640 AT3G06080.1 39.496 238 127 9 44 266 103 338 1.70e-43 154
Msa0137640 AT5G06230.3 35.060 251 132 8 41 266 59 303 1.08e-40 145
Msa0137640 AT5G64470.3 28.857 350 205 12 44 356 55 397 1.22e-35 134
Msa0137640 AT3G28150.1 30.286 350 197 11 43 353 69 410 2.13e-35 134
Msa0137640 AT5G64470.2 28.652 356 204 13 44 356 55 403 5.06e-35 132
Msa0137640 AT4G25360.1 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0137640 AT4G25360.2 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0137640 AT5G51640.1 28.809 361 198 13 43 353 137 488 1.21e-34 133
Msa0137640 AT2G14530.1 28.652 356 203 11 41 353 59 406 2.17e-34 131
Msa0137640 AT1G70230.1 29.155 343 200 16 44 353 79 411 8.71e-32 124
Msa0137640 AT1G01430.1 28.689 366 210 14 41 361 96 455 6.36e-31 122
Msa0137640 AT4G01080.1 28.011 357 211 14 39 357 86 434 5.83e-29 117
Msa0137640 AT3G02440.1 28.531 354 197 15 44 353 127 468 8.53e-28 114
Msa0137640 AT3G02440.2 28.531 354 197 15 44 353 135 476 1.02e-27 114
Msa0137640 AT2G37720.1 27.171 357 216 13 34 353 133 482 3.66e-27 112
Msa0137640 AT5G15900.2 28.771 358 192 16 44 353 86 428 1.85e-26 109
Msa0137640 AT5G15900.1 28.771 358 192 16 44 353 67 409 1.90e-26 109
Msa0137640 AT5G20680.6 26.404 356 204 14 42 353 116 457 1.43e-25 107
Msa0137640 AT5G20680.4 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0137640 AT5G20680.1 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0137640 AT5G20680.3 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0137640 AT5G20680.5 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0137640 AT5G20680.2 26.816 358 200 15 42 353 192 533 1.67e-25 107
Msa0137640 AT5G64020.1 27.528 356 208 13 44 353 57 408 4.58e-25 105
Msa0137640 AT5G15890.1 27.841 352 200 13 42 353 185 522 5.16e-25 106
Msa0137640 AT4G11090.1 24.722 360 226 11 39 357 74 429 1.10e-23 102
Msa0137640 AT4G23790.1 26.593 361 216 12 39 355 74 429 6.02e-23 99.8
Msa0137640 AT5G64470.4 28.395 243 149 9 44 266 55 292 1.01e-20 92.0
Msa0137640 AT5G64470.1 28.395 243 149 9 44 266 55 292 1.14e-20 92.0

Find 78 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTATGTTCAGATTTC+TGG 0.137068 1_3:+70236529 Msa0137640:CDS
CACACACATTCGTTCTTCTA+TGG 0.191029 1_3:+70235861 Msa0137640:CDS
GGTTAACCACTTGGTCTAAT+TGG 0.192861 1_3:+70237186 Msa0137640:CDS
ACATGAAAAGTCATGTTTAT+TGG 0.227466 1_3:+70237896 Msa0137640:CDS
TCAAATCCCTGCACTATAAA+AGG 0.249740 1_3:-70235995 None:intergenic
GGAATTGCTGCTGCACATTC+AGG 0.255467 1_3:+70237254 Msa0137640:CDS
GTAAAGGTGTAATTTGATTC+TGG 0.257863 1_3:-70236491 None:intergenic
CAAACAATCATGGTTTGGTT+TGG 0.329748 1_3:+70235785 None:intergenic
AACATTGAAGCTTACAAGAT+TGG 0.344348 1_3:+70237164 Msa0137640:CDS
AAGACTACTGTTATCTTTCA+AGG 0.351212 1_3:+70237233 Msa0137640:CDS
CCTCGACCAGTGAATATAGA+AGG 0.368131 1_3:-70237961 None:intergenic
GCATCATAAAGAGGGTAGTA+TGG 0.369410 1_3:-70235959 None:intergenic
GTTTGATGGTGTGAAATTCT+TGG 0.383916 1_3:+70236376 Msa0137640:CDS
AAGATTATCTCAAATATAGA+TGG 0.394741 1_3:+70236044 Msa0137640:CDS
GCTGGCTTTGATCCTTCCTC+TGG 0.398684 1_3:-70237835 None:intergenic
AATGGCAAACAATCATGGTT+TGG 0.409245 1_3:+70235780 None:intergenic
AAGAATGTGATCTTTCTAAA+GGG 0.412927 1_3:+70235918 Msa0137640:CDS
TGGTTAATTAACAGGTTTGA+TGG 0.414245 1_3:+70236362 Msa0137640:intron
ACATTGAAGCTTACAAGATT+GGG 0.421501 1_3:+70237165 Msa0137640:CDS
AAAGATAACAGTAGTCTTTG+AGG 0.421554 1_3:-70237228 None:intergenic
TGCAGTCACTGGTGTCTAGC+TGG 0.427585 1_3:+70238000 Msa0137640:CDS
AACATTTCATTCCAAGTGTC+GGG 0.442071 1_3:-70238027 None:intergenic
CAAACACAACTGCGGATAGA+TGG 0.442377 1_3:+70237934 Msa0137640:CDS
TGATCTTTCTAAAGGGGAAT+GGG 0.444301 1_3:+70235925 Msa0137640:CDS
GGATTTGATTGTCTCAGAAA+TGG 0.453425 1_3:+70236010 Msa0137640:CDS
CAAGAATGTGATCTTTCTAA+AGG 0.455361 1_3:+70235917 Msa0137640:CDS
TCAATAGTGTGGGTGAAAGA+TGG 0.461620 1_3:+70236667 Msa0137640:CDS
TAGCTGGTGCTCCCGACACT+TGG 0.461664 1_3:+70238016 Msa0137640:CDS
TATTTGAGATAATCTTGATC+TGG 0.461942 1_3:-70236037 None:intergenic
TACGGTTCGTGATAGAGAAA+AGG 0.466498 1_3:+70236702 Msa0137640:CDS
GTGATCTTTCTAAAGGGGAA+TGG 0.466637 1_3:+70235924 Msa0137640:CDS
CTTGGAAGATCACATGCAAA+AGG 0.466690 1_3:-70236070 None:intergenic
AGTATGAAGTTTCAATAGTG+TGG 0.498044 1_3:+70236656 Msa0137640:CDS
GAATTGCTGCTGCACATTCA+GGG 0.500253 1_3:+70237255 Msa0137640:CDS
ACACACATTCGTTCTTCTAT+GGG 0.503042 1_3:+70235862 Msa0137640:CDS
GGATCAAAGCCAGCATATCC+TGG 0.505064 1_3:+70237844 Msa0137640:CDS
ACAAGATTGGGTTAACCACT+TGG 0.507566 1_3:+70237177 Msa0137640:CDS
CAATAGTGTGGGTGAAAGAT+GGG 0.508616 1_3:+70236668 Msa0137640:CDS
AAGATAACAGTAGTCTTTGA+GGG 0.513061 1_3:-70237227 None:intergenic
AAGACAATATCAAATGACAT+TGG 0.532659 1_3:+70235817 Msa0137640:CDS
ACTCTATAAGCGACAATATG+TGG 0.533074 1_3:+70236435 Msa0137640:CDS
CAACATTTCATTCCAAGTGT+CGG 0.533298 1_3:-70238028 None:intergenic
CCACTTGTACCGAGATGAAA+CGG 0.534358 1_3:-70236746 None:intergenic
TCCCTTGAGGCATCATAAAG+AGG 0.534577 1_3:-70235968 None:intergenic
ATGTCTACACCAGGATATGC+TGG 0.536979 1_3:-70237853 None:intergenic
TGGTCGAGGAACTTCTTATG+AGG 0.538598 1_3:+70237975 Msa0137640:CDS
ACGGTTCGTGATAGAGAAAA+GGG 0.539431 1_3:+70236703 Msa0137640:CDS
AACTTGACTCCGTTTCATCT+CGG 0.548645 1_3:+70236737 Msa0137640:CDS
CCCTCTTTATGATGCCTCAA+GGG 0.550562 1_3:+70235967 Msa0137640:CDS
TGTGTGAAACCACCAATGAT+AGG 0.556830 1_3:-70236794 None:intergenic
CTTATGAGGACTGCAGTCAC+TGG 0.559215 1_3:+70237989 Msa0137640:CDS
ATCAATCCAATTAGACCAAG+TGG 0.559355 1_3:-70237192 None:intergenic
AGATGGGTACCTAGTGGATA+CGG 0.563975 1_3:+70236684 Msa0137640:CDS
GGTCACCCTTCTATATTCAC+TGG 0.564907 1_3:+70237955 Msa0137640:CDS
CCGTTTCATCTCGGTACAAG+TGG 0.575787 1_3:+70236746 Msa0137640:CDS
ACCCTCTTTATGATGCCTCA+AGG 0.586390 1_3:+70235966 Msa0137640:CDS
CCTTCTATATTCACTGGTCG+AGG 0.587820 1_3:+70237961 Msa0137640:CDS
TCATCTCGGTACAAGTGGAA+TGG 0.589411 1_3:+70236751 Msa0137640:CDS
GTATGAAGTTTCAATAGTGT+GGG 0.591688 1_3:+70236657 Msa0137640:CDS
ATTCGTTCTTCTATGGGCAG+TGG 0.593313 1_3:+70235868 Msa0137640:CDS
AGAATGTGATCTTTCTAAAG+GGG 0.601354 1_3:+70235919 Msa0137640:CDS
AAATGAGATAATGAAAGACA+TGG 0.606612 1_3:+70237139 Msa0137640:CDS
CCCTTGAGGCATCATAAAGA+GGG 0.607432 1_3:-70235967 None:intergenic
GAACAAACTAAGCCAGAGGA+AGG 0.612792 1_3:+70237823 Msa0137640:CDS
CTCGACCAGTGAATATAGAA+GGG 0.620624 1_3:-70237960 None:intergenic
TTCTGAACAATGTCTACACC+AGG 0.627751 1_3:-70237862 None:intergenic
GCATGCACATAGTACAGTGT+AGG 0.634677 1_3:-70235893 None:intergenic
TATCACGAACCGTATCCACT+AGG 0.636942 1_3:-70236693 None:intergenic
CATCCACAGACACTTTCAAG+TGG 0.640996 1_3:+70237115 Msa0137640:intron
TATCATTGGTGGTTTCACAC+AGG 0.651059 1_3:+70236796 Msa0137640:CDS
ATCCACAGACACTTTCAAGT+GGG 0.658544 1_3:+70237116 Msa0137640:intron
TTACTTTACAAACACAACTG+CGG 0.678864 1_3:+70237926 Msa0137640:CDS
TCTGGAACAAACTAAGCCAG+AGG 0.698183 1_3:+70237819 Msa0137640:CDS
TATAAAAGGACAGTCCCTTG+AGG 0.699934 1_3:-70235981 None:intergenic
AAATTCTTGGAGACATACCG+AGG 0.705651 1_3:+70236389 Msa0137640:CDS
CATAGAAGAACGAATGTGTG+TGG 0.724411 1_3:-70235860 None:intergenic
AATTCTTGGAGACATACCGA+GGG 0.724500 1_3:+70236390 Msa0137640:CDS
GGTGAAAGATGGGTACCTAG+TGG 0.748513 1_3:+70236678 Msa0137640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTAAATATGTTTTTTTT+TGG + chr1_3:70237291-70237310 Msa0137640:intron 10.0%
!!! GATTTAAATATGTTTTTTTT+TGG + chr1_3:70237291-70237310 Msa0137640:intron 10.0%
!!! GATGCAATATTTATTTTTAT+TGG + chr1_3:70236211-70236230 Msa0137640:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG - chr1_3:70236244-70236263 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG - chr1_3:70236276-70236295 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG - chr1_3:70236570-70236589 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG + chr1_3:70236955-70236974 Msa0137640:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG - chr1_3:70237421-70237440 None:intergenic 15.0%
!! TCTTCTCATTTAAAAAAAAA+TGG - chr1_3:70237434-70237453 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG - chr1_3:70237755-70237774 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG - chr1_3:70237756-70237775 None:intergenic 15.0%
!!! GATGCAATATTTATTTTTAT+TGG + chr1_3:70236211-70236230 Msa0137640:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG - chr1_3:70236244-70236263 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG - chr1_3:70236276-70236295 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG - chr1_3:70236570-70236589 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG + chr1_3:70236955-70236974 Msa0137640:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG - chr1_3:70237421-70237440 None:intergenic 15.0%
!! TCTTCTCATTTAAAAAAAAA+TGG - chr1_3:70237434-70237453 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG - chr1_3:70237755-70237774 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG - chr1_3:70237756-70237775 None:intergenic 15.0%
!! AAGATTATCTCAAATATAGA+TGG + chr1_3:70236044-70236063 Msa0137640:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG - chr1_3:70236091-70236110 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG - chr1_3:70236127-70236146 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG - chr1_3:70236193-70236212 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG - chr1_3:70236328-70236347 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG - chr1_3:70236599-70236618 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG + chr1_3:70236603-70236622 Msa0137640:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG + chr1_3:70236962-70236981 Msa0137640:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG + chr1_3:70237529-70237548 Msa0137640:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG + chr1_3:70237619-70237638 Msa0137640:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG + chr1_3:70237785-70237804 Msa0137640:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG + chr1_3:70237786-70237805 Msa0137640:intron 20.0%
!! AAGATTATCTCAAATATAGA+TGG + chr1_3:70236044-70236063 Msa0137640:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG - chr1_3:70236091-70236110 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG - chr1_3:70236127-70236146 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG - chr1_3:70236193-70236212 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG - chr1_3:70236328-70236347 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG - chr1_3:70236599-70236618 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG + chr1_3:70236603-70236622 Msa0137640:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG + chr1_3:70236962-70236981 Msa0137640:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG + chr1_3:70237529-70237548 Msa0137640:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG + chr1_3:70237619-70237638 Msa0137640:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG + chr1_3:70237785-70237804 Msa0137640:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG + chr1_3:70237786-70237805 Msa0137640:intron 20.0%
! AAGACAATATCAAATGACAT+TGG + chr1_3:70235817-70235836 Msa0137640:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG + chr1_3:70235918-70235937 Msa0137640:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG - chr1_3:70236040-70236059 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG + chr1_3:70236166-70236185 Msa0137640:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG - chr1_3:70236510-70236529 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG + chr1_3:70236562-70236581 Msa0137640:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG + chr1_3:70236782-70236801 Msa0137640:CDS 25.0%
! GCTAAAAAACTTTAGTACAT+TGG - chr1_3:70236829-70236848 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG + chr1_3:70236921-70236940 Msa0137640:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG - chr1_3:70236998-70237017 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG + chr1_3:70237139-70237158 Msa0137640:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG - chr1_3:70237541-70237560 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG + chr1_3:70237582-70237601 Msa0137640:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG + chr1_3:70237896-70237915 Msa0137640:CDS 25.0%
! AAGACAATATCAAATGACAT+TGG + chr1_3:70235817-70235836 Msa0137640:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG + chr1_3:70235918-70235937 Msa0137640:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG - chr1_3:70236040-70236059 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG + chr1_3:70236166-70236185 Msa0137640:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG - chr1_3:70236510-70236529 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG + chr1_3:70236562-70236581 Msa0137640:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG + chr1_3:70236782-70236801 Msa0137640:CDS 25.0%
! GCTAAAAAACTTTAGTACAT+TGG - chr1_3:70236829-70236848 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG + chr1_3:70236921-70236940 Msa0137640:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG - chr1_3:70236998-70237017 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG + chr1_3:70237139-70237158 Msa0137640:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG - chr1_3:70237541-70237560 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG + chr1_3:70237582-70237601 Msa0137640:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG + chr1_3:70237896-70237915 Msa0137640:CDS 25.0%
CAAGAATGTGATCTTTCTAA+AGG + chr1_3:70235917-70235936 Msa0137640:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG + chr1_3:70235919-70235938 Msa0137640:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG + chr1_3:70236342-70236361 Msa0137640:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG + chr1_3:70236354-70236373 Msa0137640:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG + chr1_3:70236362-70236381 Msa0137640:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG + chr1_3:70236411-70236430 Msa0137640:CDS 30.0%
! GAAAAAGATCATGTTTGTTG+GGG + chr1_3:70236412-70236431 Msa0137640:CDS 30.0%
! GTAAAGGTGTAATTTGATTC+TGG - chr1_3:70236494-70236513 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG + chr1_3:70236529-70236548 Msa0137640:CDS 30.0%
GTCGCATTATTATGTGTTAT+AGG + chr1_3:70236633-70236652 Msa0137640:intron 30.0%
AGTATGAAGTTTCAATAGTG+TGG + chr1_3:70236656-70236675 Msa0137640:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG + chr1_3:70236657-70236676 Msa0137640:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG + chr1_3:70236785-70236804 Msa0137640:CDS 30.0%
ACTTCTCAATAAGAGAATTG+AGG + chr1_3:70237059-70237078 Msa0137640:intron 30.0%
AATAAGAGAATTGAGGTTTG+TGG + chr1_3:70237066-70237085 Msa0137640:intron 30.0%
AACATTGAAGCTTACAAGAT+TGG + chr1_3:70237164-70237183 Msa0137640:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG + chr1_3:70237165-70237184 Msa0137640:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG - chr1_3:70237230-70237249 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG - chr1_3:70237231-70237250 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG + chr1_3:70237233-70237252 Msa0137640:CDS 30.0%
TTACTTTACAAACACAACTG+CGG + chr1_3:70237926-70237945 Msa0137640:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG + chr1_3:70238045-70238064 Msa0137640:CDS 30.0%
CAAGAATGTGATCTTTCTAA+AGG + chr1_3:70235917-70235936 Msa0137640:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG + chr1_3:70235919-70235938 Msa0137640:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG + chr1_3:70236342-70236361 Msa0137640:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG + chr1_3:70236354-70236373 Msa0137640:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG + chr1_3:70236362-70236381 Msa0137640:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG + chr1_3:70236411-70236430 Msa0137640:CDS 30.0%
! GAAAAAGATCATGTTTGTTG+GGG + chr1_3:70236412-70236431 Msa0137640:CDS 30.0%
! GTAAAGGTGTAATTTGATTC+TGG - chr1_3:70236494-70236513 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG + chr1_3:70236529-70236548 Msa0137640:CDS 30.0%
GTCGCATTATTATGTGTTAT+AGG + chr1_3:70236633-70236652 Msa0137640:intron 30.0%
AGTATGAAGTTTCAATAGTG+TGG + chr1_3:70236656-70236675 Msa0137640:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG + chr1_3:70236657-70236676 Msa0137640:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG + chr1_3:70236785-70236804 Msa0137640:CDS 30.0%
ACTTCTCAATAAGAGAATTG+AGG + chr1_3:70237059-70237078 Msa0137640:intron 30.0%
AATAAGAGAATTGAGGTTTG+TGG + chr1_3:70237066-70237085 Msa0137640:intron 30.0%
AACATTGAAGCTTACAAGAT+TGG + chr1_3:70237164-70237183 Msa0137640:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG + chr1_3:70237165-70237184 Msa0137640:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG - chr1_3:70237230-70237249 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG - chr1_3:70237231-70237250 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG + chr1_3:70237233-70237252 Msa0137640:CDS 30.0%
TTACTTTACAAACACAACTG+CGG + chr1_3:70237926-70237945 Msa0137640:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG + chr1_3:70238045-70238064 Msa0137640:CDS 30.0%
ACACACATTCGTTCTTCTAT+GGG + chr1_3:70235862-70235881 Msa0137640:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG + chr1_3:70235925-70235944 Msa0137640:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG - chr1_3:70235998-70236017 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG + chr1_3:70236010-70236029 Msa0137640:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG + chr1_3:70236376-70236395 Msa0137640:CDS 35.0%
! CAAACATGATCTTTTTCCCT+CGG - chr1_3:70236409-70236428 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG + chr1_3:70236410-70236429 Msa0137640:CDS 35.0%
ACTCTATAAGCGACAATATG+TGG + chr1_3:70236435-70236454 Msa0137640:CDS 35.0%
GAATTGAGGTTTGTGGATAT+TGG + chr1_3:70237073-70237092 Msa0137640:intron 35.0%
ATCAATCCAATTAGACCAAG+TGG - chr1_3:70237195-70237214 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG + chr1_3:70237450-70237469 Msa0137640:intron 35.0%
AACTAACCAAAAGCAAACAG+TGG - chr1_3:70237459-70237478 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG + chr1_3:70237484-70237503 Msa0137640:intron 35.0%
! CAATATGACCAACTTTTGCA+TGG - chr1_3:70237495-70237514 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG - chr1_3:70238030-70238049 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG - chr1_3:70238031-70238050 None:intergenic 35.0%
ACACACATTCGTTCTTCTAT+GGG + chr1_3:70235862-70235881 Msa0137640:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG + chr1_3:70235925-70235944 Msa0137640:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG - chr1_3:70235998-70236017 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG + chr1_3:70236010-70236029 Msa0137640:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG + chr1_3:70236376-70236395 Msa0137640:CDS 35.0%
! CAAACATGATCTTTTTCCCT+CGG - chr1_3:70236409-70236428 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG + chr1_3:70236410-70236429 Msa0137640:CDS 35.0%
ACTCTATAAGCGACAATATG+TGG + chr1_3:70236435-70236454 Msa0137640:CDS 35.0%
GAATTGAGGTTTGTGGATAT+TGG + chr1_3:70237073-70237092 Msa0137640:intron 35.0%
ATCAATCCAATTAGACCAAG+TGG - chr1_3:70237195-70237214 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG + chr1_3:70237450-70237469 Msa0137640:intron 35.0%
AACTAACCAAAAGCAAACAG+TGG - chr1_3:70237459-70237478 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG + chr1_3:70237484-70237503 Msa0137640:intron 35.0%
! CAATATGACCAACTTTTGCA+TGG - chr1_3:70237495-70237514 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG - chr1_3:70238030-70238049 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG - chr1_3:70238031-70238050 None:intergenic 35.0%
CATAGAAGAACGAATGTGTG+TGG - chr1_3:70235863-70235882 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG + chr1_3:70235861-70235880 Msa0137640:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG + chr1_3:70235924-70235943 Msa0137640:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG - chr1_3:70235962-70235981 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG - chr1_3:70235984-70236003 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG + chr1_3:70235989-70236008 Msa0137640:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG - chr1_3:70236073-70236092 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG + chr1_3:70236071-70236090 Msa0137640:CDS 40.0%
AATTAGGAAAGAGTGGAGAG+TGG - chr1_3:70236120-70236139 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG + chr1_3:70236389-70236408 Msa0137640:CDS 40.0%
AATTCTTGGAGACATACCGA+GGG + chr1_3:70236390-70236409 Msa0137640:CDS 40.0%
TCAATAGTGTGGGTGAAAGA+TGG + chr1_3:70236667-70236686 Msa0137640:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG + chr1_3:70236668-70236687 Msa0137640:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG + chr1_3:70236702-70236721 Msa0137640:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG + chr1_3:70236703-70236722 Msa0137640:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG + chr1_3:70236737-70236756 Msa0137640:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG - chr1_3:70236797-70236816 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG + chr1_3:70236796-70236815 Msa0137640:CDS 40.0%
! ATCCACAGACACTTTCAAGT+GGG + chr1_3:70237116-70237135 Msa0137640:intron 40.0%
ACAAGATTGGGTTAACCACT+TGG + chr1_3:70237177-70237196 Msa0137640:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG + chr1_3:70237186-70237205 Msa0137640:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG + chr1_3:70237801-70237820 Msa0137640:intron 40.0%
TTCTGAACAATGTCTACACC+AGG - chr1_3:70237865-70237884 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG - chr1_3:70237963-70237982 None:intergenic 40.0%
CATAGAAGAACGAATGTGTG+TGG - chr1_3:70235863-70235882 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG + chr1_3:70235861-70235880 Msa0137640:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG + chr1_3:70235924-70235943 Msa0137640:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG - chr1_3:70235962-70235981 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG - chr1_3:70235984-70236003 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG + chr1_3:70235989-70236008 Msa0137640:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG - chr1_3:70236073-70236092 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG + chr1_3:70236071-70236090 Msa0137640:CDS 40.0%
AATTAGGAAAGAGTGGAGAG+TGG - chr1_3:70236120-70236139 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG + chr1_3:70236389-70236408 Msa0137640:CDS 40.0%
AATTCTTGGAGACATACCGA+GGG + chr1_3:70236390-70236409 Msa0137640:CDS 40.0%
TCAATAGTGTGGGTGAAAGA+TGG + chr1_3:70236667-70236686 Msa0137640:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG + chr1_3:70236668-70236687 Msa0137640:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG + chr1_3:70236702-70236721 Msa0137640:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG + chr1_3:70236703-70236722 Msa0137640:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG + chr1_3:70236737-70236756 Msa0137640:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG - chr1_3:70236797-70236816 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG + chr1_3:70236796-70236815 Msa0137640:CDS 40.0%
! ATCCACAGACACTTTCAAGT+GGG + chr1_3:70237116-70237135 Msa0137640:intron 40.0%
ACAAGATTGGGTTAACCACT+TGG + chr1_3:70237177-70237196 Msa0137640:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG + chr1_3:70237186-70237205 Msa0137640:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG + chr1_3:70237801-70237820 Msa0137640:intron 40.0%
TTCTGAACAATGTCTACACC+AGG - chr1_3:70237865-70237884 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG - chr1_3:70237963-70237982 None:intergenic 40.0%
ATTCGTTCTTCTATGGGCAG+TGG + chr1_3:70235868-70235887 Msa0137640:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG - chr1_3:70235896-70235915 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG + chr1_3:70235966-70235985 Msa0137640:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG - chr1_3:70235970-70235989 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG + chr1_3:70235967-70235986 Msa0137640:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG - chr1_3:70235971-70235990 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG + chr1_3:70235988-70236007 Msa0137640:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG + chr1_3:70236684-70236703 Msa0137640:CDS 45.0%
TATCACGAACCGTATCCACT+AGG - chr1_3:70236696-70236715 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG - chr1_3:70236749-70236768 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG + chr1_3:70236751-70236770 Msa0137640:CDS 45.0%
CATCCACAGACACTTTCAAG+TGG + chr1_3:70237115-70237134 Msa0137640:intron 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG - chr1_3:70237121-70237140 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG + chr1_3:70237255-70237274 Msa0137640:CDS 45.0%
! TCTGGAACAAACTAAGCCAG+AGG + chr1_3:70237819-70237838 Msa0137640:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG + chr1_3:70237823-70237842 Msa0137640:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG - chr1_3:70237856-70237875 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG + chr1_3:70237934-70237953 Msa0137640:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG + chr1_3:70237955-70237974 Msa0137640:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG - chr1_3:70237964-70237983 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG + chr1_3:70237961-70237980 Msa0137640:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG + chr1_3:70237975-70237994 Msa0137640:CDS 45.0%
ATTCGTTCTTCTATGGGCAG+TGG + chr1_3:70235868-70235887 Msa0137640:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG - chr1_3:70235896-70235915 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG + chr1_3:70235966-70235985 Msa0137640:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG - chr1_3:70235970-70235989 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG + chr1_3:70235967-70235986 Msa0137640:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG - chr1_3:70235971-70235990 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG + chr1_3:70235988-70236007 Msa0137640:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG + chr1_3:70236684-70236703 Msa0137640:CDS 45.0%
TATCACGAACCGTATCCACT+AGG - chr1_3:70236696-70236715 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG - chr1_3:70236749-70236768 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG + chr1_3:70236751-70236770 Msa0137640:CDS 45.0%
CATCCACAGACACTTTCAAG+TGG + chr1_3:70237115-70237134 Msa0137640:intron 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG - chr1_3:70237121-70237140 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG + chr1_3:70237255-70237274 Msa0137640:CDS 45.0%
! TCTGGAACAAACTAAGCCAG+AGG + chr1_3:70237819-70237838 Msa0137640:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG + chr1_3:70237823-70237842 Msa0137640:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG - chr1_3:70237856-70237875 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG + chr1_3:70237934-70237953 Msa0137640:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG + chr1_3:70237955-70237974 Msa0137640:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG - chr1_3:70237964-70237983 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG + chr1_3:70237961-70237980 Msa0137640:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG + chr1_3:70237975-70237994 Msa0137640:CDS 45.0%
!!! TAAAAATCATATTTAAAATT+AGG - chr1_3:70236136-70236155 None:intergenic 5.0%
!! ATAAAAAATGATATATTTAT+GGG - chr1_3:70237343-70237362 None:intergenic 5.0%
!! AATAAAAAATGATATATTTA+TGG - chr1_3:70237344-70237363 None:intergenic 5.0%
!!! TAAAAATCATATTTAAAATT+AGG - chr1_3:70236136-70236155 None:intergenic 5.0%
!! ATAAAAAATGATATATTTAT+GGG - chr1_3:70237343-70237362 None:intergenic 5.0%
!! AATAAAAAATGATATATTTA+TGG - chr1_3:70237344-70237363 None:intergenic 5.0%
GGTGAAAGATGGGTACCTAG+TGG + chr1_3:70236678-70236697 Msa0137640:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG + chr1_3:70236746-70236765 Msa0137640:CDS 50.0%
GGAATTGCTGCTGCACATTC+AGG + chr1_3:70237254-70237273 Msa0137640:CDS 50.0%
GGATCAAAGCCAGCATATCC+TGG + chr1_3:70237844-70237863 Msa0137640:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG + chr1_3:70237989-70238008 Msa0137640:CDS 50.0%
GGTGAAAGATGGGTACCTAG+TGG + chr1_3:70236678-70236697 Msa0137640:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG + chr1_3:70236746-70236765 Msa0137640:CDS 50.0%
GGAATTGCTGCTGCACATTC+AGG + chr1_3:70237254-70237273 Msa0137640:CDS 50.0%
GGATCAAAGCCAGCATATCC+TGG + chr1_3:70237844-70237863 Msa0137640:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG + chr1_3:70237989-70238008 Msa0137640:CDS 50.0%
!! GCTGGCTTTGATCCTTCCTC+TGG - chr1_3:70237838-70237857 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG + chr1_3:70238000-70238019 Msa0137640:CDS 55.0%
!! GCTGGCTTTGATCCTTCCTC+TGG - chr1_3:70237838-70237857 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG + chr1_3:70238000-70238019 Msa0137640:CDS 55.0%
TAGCTGGTGCTCCCGACACT+TGG + chr1_3:70238016-70238035 Msa0137640:CDS 60.0%
TAGCTGGTGCTCCCGACACT+TGG + chr1_3:70238016-70238035 Msa0137640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70235794 70238092 70235794 ID=Msa0137640;Name=Msa0137640
chr1_3 mRNA 70235794 70238092 70235794 ID=Msa0137640-mRNA-1;Parent=Msa0137640;Name=Msa0137640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|362
chr1_3 exon 70235794 70236092 70235794 ID=Msa0137640-mRNA-1:exon:24298;Parent=Msa0137640-mRNA-1
chr1_3 exon 70236376 70236550 70236376 ID=Msa0137640-mRNA-1:exon:24299;Parent=Msa0137640-mRNA-1
chr1_3 exon 70236655 70236830 70236655 ID=Msa0137640-mRNA-1:exon:24300;Parent=Msa0137640-mRNA-1
chr1_3 exon 70237124 70237276 70237124 ID=Msa0137640-mRNA-1:exon:24301;Parent=Msa0137640-mRNA-1
chr1_3 exon 70237807 70238092 70237807 ID=Msa0137640-mRNA-1:exon:24302;Parent=Msa0137640-mRNA-1
chr1_3 CDS 70235794 70236092 70235794 ID=Msa0137640-mRNA-1:cds;Parent=Msa0137640-mRNA-1
chr1_3 CDS 70236376 70236550 70236376 ID=Msa0137640-mRNA-1:cds;Parent=Msa0137640-mRNA-1
chr1_3 CDS 70236655 70236830 70236655 ID=Msa0137640-mRNA-1:cds;Parent=Msa0137640-mRNA-1
chr1_3 CDS 70237124 70237276 70237124 ID=Msa0137640-mRNA-1:cds;Parent=Msa0137640-mRNA-1
chr1_3 CDS 70237807 70238092 70237807 ID=Msa0137640-mRNA-1:cds;Parent=Msa0137640-mRNA-1
Gene Sequence

>Msa0137640

ATGGTTTGGTTTGGAAAGATTTTAAGACAATATCAAATGACATTGGATTTCTTGTTACATCTTCTGCCACACACATTCGTTCTTCTATGGGCAGTGGCACCTACACTGTACTATGTGCATGCTCAAGAATGTGATCTTTCTAAAGGGGAATGGGTTGTTGATGATCCATACTACCCTCTTTATGATGCCTCAAGGGACTGTCCTTTTATAGTGCAGGGATTTGATTGTCTCAGAAATGGTAGACCAGATCAAGATTATCTCAAATATAGATGGAAACCTTTTGCATGTGATCTTCCAAGGTTTGATGGTGTGAAATTCTTGGAGACATACCGAGGGAAAAAGATCATGTTTGTTGGGGACTCTATAAGCGACAATATGTGGCAGTCACTTGCTTGTTTGCTTCACATTGCAGTGCCAGAATCAAATTACACCTTTACAAGACTAACAAAACATCTTTCTATGTTCAGATTTCTGGAGTATGAAGTTTCAATAGTGTGGGTGAAAGATGGGTACCTAGTGGATACGGTTCGTGATAGAGAAAAGGGAAGAATTATAAAACTTGACTCCGTTTCATCTCGGTACAAGTGGAATGGAGATGTTTTGATTTTCAATACCTATCATTGGTGGTTTCACACAGGACAGACTCCAATACACTTTCAAGTGGGAAATGAGATAATGAAAGACATGGATAACATTGAAGCTTACAAGATTGGGTTAACCACTTGGTCTAATTGGATTGATTCTAACATTGATCCCTCAAAGACTACTGTTATCTTTCAAGGAATTGCTGCTGCACATTCAGGGGAAAAACACTGTCTGGAACAAACTAAGCCAGAGGAAGGATCAAAGCCAGCATATCCTGGTGTAGACATTGTTCAGAATGTTTTGAGTAACATGAAAAGTCATGTTTATTGGCTTGACATTACTTTACAAACACAACTGCGGATAGATGGTCACCCTTCTATATTCACTGGTCGAGGAACTTCTTATGAGGACTGCAGTCACTGGTGTCTAGCTGGTGCTCCCGACACTTGGAATGAAATGTTGTATGCTGTTTTACTAGGAAATCAATATTATCGTCATTTGTAA
Protein sequence

>Msa0137640

MVWFGKILRQYQMTLDFLLHLLPHTFVLLWAVAPTLYYVHAQECDLSKGEWVVDDPYYPLYDASRDCPFIVQGFDCLRNGRPDQDYLKYRWKPFACDLPRFDGVKFLETYRGKKIMFVGDSISDNMWQSLACLLHIAVPESNYTFTRLTKHLSMFRFLEYEVSIVWVKDGYLVDTVRDREKGRIIKLDSVSSRYKWNGDVLIFNTYHWWFHTGQTPIHFQVGNEIMKDMDNIEAYKIGLTTWSNWIDSNIDPSKTTVIFQGIAAAHSGEKHCLEQTKPEEGSKPAYPGVDIVQNVLSNMKSHVYWLDITLQTQLRIDGHPSIFTGRGTSYEDCSHWCLAGAPDTWNEMLYAVLLGNQYYRHL*