AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090320 MtrunA17_Chr1g0209921 97.388 268 7 0 1 268 1 268 0.0 549
Msa0090320 MtrunA17_Chr2g0314791 64.000 350 114 5 13 354 1 346 1.22e-162 459
Msa0090320 MtrunA17_Chr2g0314801 47.207 358 165 9 15 353 1 353 3.55e-110 325
Msa0090320 MtrunA17_Chr3g0097891 48.138 349 158 10 22 354 10 351 4.46e-107 318
Msa0090320 MtrunA17_Chr2g0283581 48.780 328 149 10 39 353 37 358 2.03e-100 301
Msa0090320 MtrunA17_Chr4g0045941 45.584 351 170 11 17 354 9 351 2.48e-99 298
Msa0090320 MtrunA17_Chr4g0045951 46.429 336 162 10 32 354 33 363 6.43e-97 292
Msa0090320 MtrunA17_Chr3g0085071 45.045 333 163 9 35 353 37 363 4.14e-95 288
Msa0090320 MtrunA17_Chr3g0085081 45.266 338 163 10 31 353 18 348 2.23e-94 285
Msa0090320 MtrunA17_Chr5g0413851 45.783 332 160 10 39 356 37 362 6.96e-94 284
Msa0090320 MtrunA17_Chr2g0325481 46.526 331 152 11 41 355 47 368 1.38e-93 284
Msa0090320 MtrunA17_Chr3g0091031 44.510 337 167 9 31 353 18 348 2.04e-93 283
Msa0090320 MtrunA17_Chr4g0041011 45.732 328 155 10 41 353 44 363 1.53e-91 278
Msa0090320 MtrunA17_Chr3g0105301 41.329 346 169 11 39 354 36 377 4.80e-85 262
Msa0090320 MtrunA17_Chr5g0430371 41.341 358 169 11 34 354 47 400 1.65e-83 259
Msa0090320 MtrunA17_Chr4g0068111 39.884 346 170 11 43 354 113 454 1.54e-78 248
Msa0090320 MtrunA17_Chr1g0171171 39.759 332 175 10 41 353 50 375 9.11e-78 243
Msa0090320 MtrunA17_Chr7g0258851 38.682 349 178 12 43 358 247 592 1.25e-77 249
Msa0090320 MtrunA17_Chr1g0210771 40.361 332 172 12 42 353 57 382 4.52e-77 242
Msa0090320 MtrunA17_Chr1g0175671 39.420 345 173 12 43 354 169 510 4.91e-77 246
Msa0090320 MtrunA17_Chr7g0269991 39.759 332 171 11 44 350 137 464 3.90e-75 239
Msa0090320 MtrunA17_Chr4g0006991 36.127 346 185 10 42 353 84 427 1.03e-70 227
Msa0090320 MtrunA17_Chr4g0071391 36.888 347 185 12 42 357 107 450 3.68e-69 224
Msa0090320 MtrunA17_Chr1g0213281 38.261 345 176 11 44 354 175 516 1.39e-68 224
Msa0090320 MtrunA17_Chr5g0413271 36.070 341 184 11 42 354 143 477 2.33e-68 223
Msa0090320 MtrunA17_Chr8g0360521 33.333 345 195 9 44 356 71 412 6.75e-67 217
Msa0090320 MtrunA17_Chr3g0126021 36.364 341 188 12 39 354 124 460 2.25e-66 217
Msa0090320 MtrunA17_Chr8g0368461 35.196 358 181 12 43 354 177 529 2.43e-66 218
Msa0090320 MtrunA17_Chr7g0259711 37.006 354 185 13 41 359 88 438 4.19e-65 213
Msa0090320 MtrunA17_Chr3g0113671 35.429 350 188 10 42 355 104 451 8.78e-65 212
Msa0090320 MtrunA17_Chr4g0005481 34.682 346 193 8 39 353 103 446 2.31e-64 211
Msa0090320 MtrunA17_Chr7g0242701 34.670 349 188 10 41 353 83 427 2.95e-64 210
Msa0090320 MtrunA17_Chr1g0209931 93.750 96 6 0 267 362 6 101 4.45e-62 194
Msa0090320 MtrunA17_Chr2g0287901 38.150 346 175 12 44 354 97 438 1.04e-61 204
Msa0090320 MtrunA17_Chr3g0114101 35.143 350 181 11 44 354 89 431 6.25e-61 201
Msa0090320 MtrunA17_Chr8g0384151 36.391 338 182 13 42 354 88 417 1.61e-60 201
Msa0090320 MtrunA17_Chr4g0005491 31.868 364 206 10 30 354 48 408 2.01e-60 199
Msa0090320 MtrunA17_Chr5g0437291 33.994 353 192 11 42 355 163 513 2.39e-58 197
Msa0090320 MtrunA17_Chr5g0437601 33.333 345 194 10 44 354 83 425 1.95e-56 190
Msa0090320 MtrunA17_Chr7g0243301 30.899 356 204 10 39 355 59 411 1.13e-55 187
Msa0090320 MtrunA17_Chr1g0178081 30.854 363 181 14 17 358 33 346 3.85e-44 155
Msa0090320 MtrunA17_Chr1g0188191 31.044 364 181 15 44 353 234 581 4.20e-37 140
Msa0090320 MtrunA17_Chr6g0476041 27.793 367 189 14 44 353 167 514 2.86e-34 132
Msa0090320 MtrunA17_Chr4g0049421 28.011 357 200 15 44 354 48 393 3.26e-33 127
Msa0090320 MtrunA17_Chr6g0456681 27.528 356 211 12 39 353 59 408 1.19e-31 123
Msa0090320 MtrunA17_Chr5g0414061 28.409 352 211 12 40 353 90 438 2.12e-31 123
Msa0090320 MtrunA17_Chr2g0283851 29.444 360 189 18 45 353 56 401 7.10e-31 121
Msa0090320 MtrunA17_Chr6g0456691 27.966 354 203 13 42 353 76 419 9.02e-31 121
Msa0090320 MtrunA17_Chr8g0384421 28.490 351 203 13 42 353 131 472 3.83e-30 120
Msa0090320 MtrunA17_Chr5g0414091 28.142 366 212 15 32 353 73 431 3.91e-28 114
Msa0090320 MtrunA17_Chr6g0451321 27.374 358 218 13 33 353 105 457 4.78e-28 114
Msa0090320 MtrunA17_Chr6g0455901 25.648 347 214 11 43 349 70 412 6.36e-27 110
Msa0090320 MtrunA17_Chr3g0140371 27.778 360 209 15 44 361 18 368 1.18e-26 108
Msa0090320 MtrunA17_Chr7g0226991 27.424 361 212 11 42 359 55 408 2.36e-26 108
Msa0090320 MtrunA17_Chr8g0347321 26.944 360 208 16 41 355 92 441 1.01e-25 107
Msa0090320 MtrunA17_Chr4g0070341 27.066 351 208 12 42 353 130 471 4.87e-24 102
Msa0090320 MtrunA17_Chr8g0391481 27.374 358 208 13 40 353 23 372 7.56e-24 101
Msa0090320 MtrunA17_Chr5g0414041 27.401 354 206 15 44 353 87 433 8.12e-24 102
Msa0090320 MtrunA17_Chr7g0221291 42.478 113 63 2 23 135 58 168 1.28e-23 95.9
Msa0090320 MtrunA17_Chr8g0387921 25.281 356 216 14 43 355 73 421 3.11e-22 97.1
Msa0090320 MtrunA17_Chr7g0221271 44.118 102 51 2 35 134 70 167 3.53e-22 93.2
Msa0090320 MtrunA17_Chr5g0414051 42.727 110 55 3 31 134 56 163 1.61e-20 92.4
Msa0090320 MtrunA17_Chr3g0085101 40.952 105 51 2 229 322 1 105 1.57e-19 83.2
Msa0090320 MtrunA17_Chr5g0429211 43.421 76 42 1 100 175 194 268 2.28e-11 63.9
Msa0090320 MtrunA17_Chr2g0287931 34.188 117 64 5 106 209 2 118 2.36e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090320 AT1G78710.1 51.205 332 141 9 38 354 32 357 4.46e-116 341
Msa0090320 AT2G30900.1 47.706 327 152 8 44 354 43 366 1.00e-102 307
Msa0090320 AT1G29050.1 46.341 328 156 11 40 353 57 378 8.12e-96 290
Msa0090320 AT2G34070.1 46.769 325 152 10 44 353 65 383 1.34e-95 290
Msa0090320 AT3G14850.2 45.921 331 156 10 41 354 31 355 1.80e-94 286
Msa0090320 AT2G42570.1 46.246 333 157 10 39 356 42 367 9.75e-94 285
Msa0090320 AT2G31110.2 45.399 326 156 11 43 353 44 362 7.76e-91 277
Msa0090320 AT1G78710.2 44.582 323 123 9 38 354 25 297 9.75e-89 269
Msa0090320 AT3G54260.1 43.544 333 162 11 44 356 51 377 2.51e-82 256
Msa0090320 AT5G58600.1 42.105 342 161 12 44 354 66 401 1.21e-80 252
Msa0090320 AT2G30010.1 41.737 357 163 13 36 354 48 397 2.55e-80 251
Msa0090320 AT2G30010.2 41.737 357 163 13 36 354 91 440 8.62e-80 251
Msa0090320 AT3G62390.1 41.471 340 169 12 42 354 136 472 4.91e-79 250
Msa0090320 AT5G49340.1 38.506 348 172 10 44 354 100 442 1.95e-78 248
Msa0090320 AT2G30900.2 52.252 222 99 6 44 261 43 261 2.81e-74 231
Msa0090320 AT3G12060.1 38.150 346 178 11 42 354 194 536 2.62e-72 235
Msa0090320 AT5G20590.1 39.003 341 177 14 44 354 141 480 1.63e-71 231
Msa0090320 AT5G06700.1 36.994 346 182 13 42 354 253 595 9.54e-71 232
Msa0090320 AT5G01360.2 35.159 347 188 9 42 353 34 378 2.27e-70 225
Msa0090320 AT5G01360.1 35.159 347 188 9 42 353 90 434 1.15e-69 224
Msa0090320 AT1G60790.1 36.752 351 179 11 42 354 188 533 2.63e-69 227
Msa0090320 AT2G31110.3 47.845 232 111 8 43 271 44 268 3.14e-68 216
Msa0090320 AT1G73140.1 33.623 345 194 9 42 354 65 406 2.98e-67 218
Msa0090320 AT1G48880.1 37.685 337 183 11 39 354 110 440 2.28e-66 216
Msa0090320 AT2G34070.2 44.664 253 121 8 116 353 1 249 9.23e-65 206
Msa0090320 AT3G55990.1 35.143 350 189 9 42 355 138 485 1.17e-63 211
Msa0090320 AT5G06230.2 35.754 358 184 12 41 358 18 369 3.93e-62 203
Msa0090320 AT5G19160.1 37.535 357 177 16 44 359 99 450 4.02e-62 206
Msa0090320 AT3G14850.1 44.048 252 120 8 116 350 1 248 4.14e-62 199
Msa0090320 AT5G06230.1 35.754 358 184 12 41 358 59 410 8.39e-62 204
Msa0090320 AT3G06080.2 37.536 349 181 14 44 357 103 449 6.24e-61 203
Msa0090320 AT2G40160.2 34.819 359 175 12 44 354 77 424 2.29e-60 201
Msa0090320 AT2G40160.1 34.746 354 172 12 44 349 77 419 9.85e-60 199
Msa0090320 AT5G01620.2 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0090320 AT5G01620.1 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0090320 AT5G01620.3 32.394 355 200 11 34 353 108 457 2.14e-59 199
Msa0090320 AT2G40320.1 33.524 349 192 11 42 354 79 423 2.85e-57 192
Msa0090320 AT3G11570.1 36.420 324 174 11 66 358 102 424 3.69e-57 192
Msa0090320 AT2G40150.1 32.773 357 196 11 43 357 70 424 4.39e-57 192
Msa0090320 AT2G38320.1 32.955 352 196 12 41 354 56 405 6.66e-56 188
Msa0090320 AT3G11030.1 33.621 348 194 11 42 354 104 449 1.58e-55 188
Msa0090320 AT5G58600.2 44.298 228 118 8 44 266 66 289 1.77e-55 184
Msa0090320 AT3G62390.2 41.057 246 128 7 42 273 136 378 2.46e-55 187
Msa0090320 AT5G20590.2 39.241 237 129 8 44 266 141 376 1.44e-51 176
Msa0090320 AT2G38320.2 32.177 317 176 11 76 354 7 322 3.87e-46 160
Msa0090320 AT2G40160.3 36.475 244 124 6 44 266 77 310 2.26e-45 158
Msa0090320 AT5G19160.2 39.076 238 128 8 44 266 99 334 3.13e-45 159
Msa0090320 AT2G31110.1 41.905 210 103 7 159 353 9 214 3.47e-44 152
Msa0090320 AT3G06080.1 39.496 238 127 9 44 266 103 338 1.70e-43 154
Msa0090320 AT5G06230.3 35.060 251 132 8 41 266 59 303 1.08e-40 145
Msa0090320 AT5G64470.3 28.857 350 205 12 44 356 55 397 1.22e-35 134
Msa0090320 AT3G28150.1 30.286 350 197 11 43 353 69 410 2.13e-35 134
Msa0090320 AT5G64470.2 28.652 356 204 13 44 356 55 403 5.06e-35 132
Msa0090320 AT4G25360.1 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0090320 AT4G25360.2 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0090320 AT5G51640.1 28.809 361 198 13 43 353 137 488 1.21e-34 133
Msa0090320 AT2G14530.1 28.652 356 203 11 41 353 59 406 2.17e-34 131
Msa0090320 AT1G70230.1 29.155 343 200 16 44 353 79 411 8.71e-32 124
Msa0090320 AT1G01430.1 28.689 366 210 14 41 361 96 455 6.36e-31 122
Msa0090320 AT4G01080.1 28.011 357 211 14 39 357 86 434 5.83e-29 117
Msa0090320 AT3G02440.1 28.531 354 197 15 44 353 127 468 8.53e-28 114
Msa0090320 AT3G02440.2 28.531 354 197 15 44 353 135 476 1.02e-27 114
Msa0090320 AT2G37720.1 27.171 357 216 13 34 353 133 482 3.66e-27 112
Msa0090320 AT5G15900.2 28.771 358 192 16 44 353 86 428 1.85e-26 109
Msa0090320 AT5G15900.1 28.771 358 192 16 44 353 67 409 1.90e-26 109
Msa0090320 AT5G20680.6 26.404 356 204 14 42 353 116 457 1.43e-25 107
Msa0090320 AT5G20680.4 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0090320 AT5G20680.1 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0090320 AT5G20680.3 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0090320 AT5G20680.5 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0090320 AT5G20680.2 26.816 358 200 15 42 353 192 533 1.67e-25 107
Msa0090320 AT5G64020.1 27.528 356 208 13 44 353 57 408 4.58e-25 105
Msa0090320 AT5G15890.1 27.841 352 200 13 42 353 185 522 5.16e-25 106
Msa0090320 AT4G11090.1 24.722 360 226 11 39 357 74 429 1.10e-23 102
Msa0090320 AT4G23790.1 26.593 361 216 12 39 355 74 429 6.02e-23 99.8
Msa0090320 AT5G64470.4 28.395 243 149 9 44 266 55 292 1.01e-20 92.0
Msa0090320 AT5G64470.1 28.395 243 149 9 44 266 55 292 1.14e-20 92.0

Find 78 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTATGTTCAGATTTC+TGG 0.137068 1_2:+72291098 Msa0090320:CDS
CACACACATTCGTTCTTCTA+TGG 0.191029 1_2:+72290405 Msa0090320:CDS
GGTTAACCACTTGGTCTAAT+TGG 0.192861 1_2:+72291755 Msa0090320:CDS
ACATGAAAAGTCATGTTTAT+TGG 0.227466 1_2:+72292465 Msa0090320:CDS
TCAAATCCCTGCACTATAAA+AGG 0.249740 1_2:-72290539 None:intergenic
GGAATTGCTGCTGCACATTC+AGG 0.255467 1_2:+72291823 Msa0090320:CDS
GTAAAGGTGTAATTTGATTC+TGG 0.257863 1_2:-72291060 None:intergenic
CAAACAATCATGGTTTGGTT+TGG 0.329748 1_2:+72290329 None:intergenic
AACATTGAAGCTTACAAGAT+TGG 0.344348 1_2:+72291733 Msa0090320:CDS
AAGACTACTGTTATCTTTCA+AGG 0.351212 1_2:+72291802 Msa0090320:CDS
CCTCGACCAGTGAATATAGA+AGG 0.368131 1_2:-72292530 None:intergenic
GCATCATAAAGAGGGTAGTA+TGG 0.369410 1_2:-72290503 None:intergenic
GTTTGATGGTGTGAAATTCT+TGG 0.383916 1_2:+72290945 Msa0090320:CDS
AAGATTATCTCAAATATAGA+TGG 0.394741 1_2:+72290588 Msa0090320:CDS
GCTGGCTTTGATCCTTCCTC+TGG 0.398684 1_2:-72292404 None:intergenic
AATGGCAAACAATCATGGTT+TGG 0.409245 1_2:+72290324 None:intergenic
AAGAATGTGATCTTTCTAAA+GGG 0.412927 1_2:+72290462 Msa0090320:CDS
TGGTTAATTAACAGGTTTGA+TGG 0.414245 1_2:+72290931 Msa0090320:intron
ACATTGAAGCTTACAAGATT+GGG 0.421501 1_2:+72291734 Msa0090320:CDS
AAAGATAACAGTAGTCTTTG+AGG 0.421554 1_2:-72291797 None:intergenic
TGCAGTCACTGGTGTCTAGC+TGG 0.427585 1_2:+72292569 Msa0090320:CDS
AACATTTCATTCCAAGTGTC+GGG 0.442071 1_2:-72292596 None:intergenic
CAAACACAACTGCGGATAGA+TGG 0.442377 1_2:+72292503 Msa0090320:CDS
TGATCTTTCTAAAGGGGAAT+GGG 0.444301 1_2:+72290469 Msa0090320:CDS
GGATTTGATTGTCTCAGAAA+TGG 0.453425 1_2:+72290554 Msa0090320:CDS
CAAGAATGTGATCTTTCTAA+AGG 0.455361 1_2:+72290461 Msa0090320:CDS
TCAATAGTGTGGGTGAAAGA+TGG 0.461620 1_2:+72291236 Msa0090320:CDS
TAGCTGGTGCTCCCGACACT+TGG 0.461664 1_2:+72292585 Msa0090320:CDS
TATTTGAGATAATCTTGATC+TGG 0.461942 1_2:-72290581 None:intergenic
TACGGTTCGTGATAGAGAAA+AGG 0.466498 1_2:+72291271 Msa0090320:CDS
GTGATCTTTCTAAAGGGGAA+TGG 0.466637 1_2:+72290468 Msa0090320:CDS
CTTGGAAGATCACATGCAAA+AGG 0.466690 1_2:-72290614 None:intergenic
AGTATGAAGTTTCAATAGTG+TGG 0.498044 1_2:+72291225 Msa0090320:CDS
GAATTGCTGCTGCACATTCA+GGG 0.500253 1_2:+72291824 Msa0090320:CDS
ACACACATTCGTTCTTCTAT+GGG 0.503042 1_2:+72290406 Msa0090320:CDS
GGATCAAAGCCAGCATATCC+TGG 0.505064 1_2:+72292413 Msa0090320:CDS
ACAAGATTGGGTTAACCACT+TGG 0.507566 1_2:+72291746 Msa0090320:CDS
CAATAGTGTGGGTGAAAGAT+GGG 0.508616 1_2:+72291237 Msa0090320:CDS
AAGATAACAGTAGTCTTTGA+GGG 0.513061 1_2:-72291796 None:intergenic
AAGACAATATCAAATGACAT+TGG 0.532659 1_2:+72290361 Msa0090320:CDS
ACTCTATAAGCGACAATATG+TGG 0.533074 1_2:+72291004 Msa0090320:CDS
CAACATTTCATTCCAAGTGT+CGG 0.533298 1_2:-72292597 None:intergenic
CCACTTGTACCGAGATGAAA+CGG 0.534358 1_2:-72291315 None:intergenic
TCCCTTGAGGCATCATAAAG+AGG 0.534577 1_2:-72290512 None:intergenic
ATGTCTACACCAGGATATGC+TGG 0.536979 1_2:-72292422 None:intergenic
TGGTCGAGGAACTTCTTATG+AGG 0.538598 1_2:+72292544 Msa0090320:CDS
ACGGTTCGTGATAGAGAAAA+GGG 0.539431 1_2:+72291272 Msa0090320:CDS
AACTTGACTCCGTTTCATCT+CGG 0.548645 1_2:+72291306 Msa0090320:CDS
CCCTCTTTATGATGCCTCAA+GGG 0.550562 1_2:+72290511 Msa0090320:CDS
TGTGTGAAACCACCAATGAT+AGG 0.556830 1_2:-72291363 None:intergenic
CTTATGAGGACTGCAGTCAC+TGG 0.559215 1_2:+72292558 Msa0090320:CDS
ATCAATCCAATTAGACCAAG+TGG 0.559355 1_2:-72291761 None:intergenic
AGATGGGTACCTAGTGGATA+CGG 0.563975 1_2:+72291253 Msa0090320:CDS
GGTCACCCTTCTATATTCAC+TGG 0.564907 1_2:+72292524 Msa0090320:CDS
CCGTTTCATCTCGGTACAAG+TGG 0.575787 1_2:+72291315 Msa0090320:CDS
ACCCTCTTTATGATGCCTCA+AGG 0.586390 1_2:+72290510 Msa0090320:CDS
CCTTCTATATTCACTGGTCG+AGG 0.587820 1_2:+72292530 Msa0090320:CDS
TCATCTCGGTACAAGTGGAA+TGG 0.589411 1_2:+72291320 Msa0090320:CDS
GTATGAAGTTTCAATAGTGT+GGG 0.591688 1_2:+72291226 Msa0090320:CDS
ATTCGTTCTTCTATGGGCAG+TGG 0.593313 1_2:+72290412 Msa0090320:CDS
AGAATGTGATCTTTCTAAAG+GGG 0.601354 1_2:+72290463 Msa0090320:CDS
AAATGAGATAATGAAAGACA+TGG 0.606612 1_2:+72291708 Msa0090320:CDS
CCCTTGAGGCATCATAAAGA+GGG 0.607432 1_2:-72290511 None:intergenic
GAACAAACTAAGCCAGAGGA+AGG 0.612792 1_2:+72292392 Msa0090320:CDS
CTCGACCAGTGAATATAGAA+GGG 0.620624 1_2:-72292529 None:intergenic
TTCTGAACAATGTCTACACC+AGG 0.627751 1_2:-72292431 None:intergenic
GCATGCACATAGTACAGTGT+AGG 0.634677 1_2:-72290437 None:intergenic
TATCACGAACCGTATCCACT+AGG 0.636942 1_2:-72291262 None:intergenic
CATCCACAGACACTTTCAAG+TGG 0.640996 1_2:+72291684 Msa0090320:intron
TATCATTGGTGGTTTCACAC+AGG 0.651059 1_2:+72291365 Msa0090320:CDS
ATCCACAGACACTTTCAAGT+GGG 0.658544 1_2:+72291685 Msa0090320:intron
TTACTTTACAAACACAACTG+CGG 0.678864 1_2:+72292495 Msa0090320:CDS
TCTGGAACAAACTAAGCCAG+AGG 0.698183 1_2:+72292388 Msa0090320:CDS
TATAAAAGGACAGTCCCTTG+AGG 0.699934 1_2:-72290525 None:intergenic
AAATTCTTGGAGACATACCG+AGG 0.705651 1_2:+72290958 Msa0090320:CDS
CATAGAAGAACGAATGTGTG+TGG 0.724411 1_2:-72290404 None:intergenic
AATTCTTGGAGACATACCGA+GGG 0.724500 1_2:+72290959 Msa0090320:CDS
GGTGAAAGATGGGTACCTAG+TGG 0.748513 1_2:+72291247 Msa0090320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTAAATATGTTTTTTTT+TGG + chr1_2:72291860-72291879 Msa0090320:intron 10.0%
!!! GATTTAAATATGTTTTTTTT+TGG + chr1_2:72291860-72291879 Msa0090320:intron 10.0%
!!! GATGCAATATTTATTTTTAT+TGG + chr1_2:72290755-72290774 Msa0090320:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG - chr1_2:72290788-72290807 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG - chr1_2:72290820-72290839 None:intergenic 15.0%
!!! AAATTTGTTCATATTGAAAT+TGG - chr1_2:72290853-72290872 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG - chr1_2:72291139-72291158 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG + chr1_2:72291524-72291543 Msa0090320:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG - chr1_2:72291990-72292009 None:intergenic 15.0%
!! TCTTCTCATTTAAAAAAAAA+TGG - chr1_2:72292003-72292022 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG - chr1_2:72292324-72292343 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG - chr1_2:72292325-72292344 None:intergenic 15.0%
!!! GATGCAATATTTATTTTTAT+TGG + chr1_2:72290755-72290774 Msa0090320:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG - chr1_2:72290788-72290807 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG - chr1_2:72290820-72290839 None:intergenic 15.0%
!!! AAATTTGTTCATATTGAAAT+TGG - chr1_2:72290853-72290872 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG - chr1_2:72291139-72291158 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG + chr1_2:72291524-72291543 Msa0090320:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG - chr1_2:72291990-72292009 None:intergenic 15.0%
!! TCTTCTCATTTAAAAAAAAA+TGG - chr1_2:72292003-72292022 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG - chr1_2:72292324-72292343 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG - chr1_2:72292325-72292344 None:intergenic 15.0%
!! AAGATTATCTCAAATATAGA+TGG + chr1_2:72290588-72290607 Msa0090320:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG - chr1_2:72290635-72290654 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG - chr1_2:72290671-72290690 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG - chr1_2:72290737-72290756 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG - chr1_2:72290897-72290916 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG - chr1_2:72291168-72291187 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG + chr1_2:72291172-72291191 Msa0090320:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG + chr1_2:72291531-72291550 Msa0090320:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG + chr1_2:72292098-72292117 Msa0090320:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG + chr1_2:72292188-72292207 Msa0090320:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG + chr1_2:72292354-72292373 Msa0090320:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG + chr1_2:72292355-72292374 Msa0090320:intron 20.0%
!! AAGATTATCTCAAATATAGA+TGG + chr1_2:72290588-72290607 Msa0090320:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG - chr1_2:72290635-72290654 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG - chr1_2:72290671-72290690 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG - chr1_2:72290737-72290756 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG - chr1_2:72290897-72290916 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG - chr1_2:72291168-72291187 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG + chr1_2:72291172-72291191 Msa0090320:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG + chr1_2:72291531-72291550 Msa0090320:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG + chr1_2:72292098-72292117 Msa0090320:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG + chr1_2:72292188-72292207 Msa0090320:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG + chr1_2:72292354-72292373 Msa0090320:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG + chr1_2:72292355-72292374 Msa0090320:intron 20.0%
! AAGACAATATCAAATGACAT+TGG + chr1_2:72290361-72290380 Msa0090320:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG + chr1_2:72290462-72290481 Msa0090320:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG - chr1_2:72290584-72290603 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG + chr1_2:72290710-72290729 Msa0090320:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG - chr1_2:72291079-72291098 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG + chr1_2:72291131-72291150 Msa0090320:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG + chr1_2:72291351-72291370 Msa0090320:CDS 25.0%
! GCTAAAAAACTTTAGTACAT+TGG - chr1_2:72291398-72291417 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG + chr1_2:72291490-72291509 Msa0090320:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG - chr1_2:72291567-72291586 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG + chr1_2:72291708-72291727 Msa0090320:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG - chr1_2:72292110-72292129 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG + chr1_2:72292151-72292170 Msa0090320:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG + chr1_2:72292465-72292484 Msa0090320:CDS 25.0%
! AAGACAATATCAAATGACAT+TGG + chr1_2:72290361-72290380 Msa0090320:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG + chr1_2:72290462-72290481 Msa0090320:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG - chr1_2:72290584-72290603 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG + chr1_2:72290710-72290729 Msa0090320:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG - chr1_2:72291079-72291098 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG + chr1_2:72291131-72291150 Msa0090320:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG + chr1_2:72291351-72291370 Msa0090320:CDS 25.0%
! GCTAAAAAACTTTAGTACAT+TGG - chr1_2:72291398-72291417 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG + chr1_2:72291490-72291509 Msa0090320:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG - chr1_2:72291567-72291586 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG + chr1_2:72291708-72291727 Msa0090320:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG - chr1_2:72292110-72292129 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG + chr1_2:72292151-72292170 Msa0090320:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG + chr1_2:72292465-72292484 Msa0090320:CDS 25.0%
CAAGAATGTGATCTTTCTAA+AGG + chr1_2:72290461-72290480 Msa0090320:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG + chr1_2:72290463-72290482 Msa0090320:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG + chr1_2:72290911-72290930 Msa0090320:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG + chr1_2:72290923-72290942 Msa0090320:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG + chr1_2:72290931-72290950 Msa0090320:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG + chr1_2:72290980-72290999 Msa0090320:CDS 30.0%
! GAAAAAGATCATGTTTGTTG+GGG + chr1_2:72290981-72291000 Msa0090320:CDS 30.0%
! GTAAAGGTGTAATTTGATTC+TGG - chr1_2:72291063-72291082 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG + chr1_2:72291098-72291117 Msa0090320:CDS 30.0%
GTCGCATTATTATGTGTTAT+AGG + chr1_2:72291202-72291221 Msa0090320:intron 30.0%
AGTATGAAGTTTCAATAGTG+TGG + chr1_2:72291225-72291244 Msa0090320:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG + chr1_2:72291226-72291245 Msa0090320:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG + chr1_2:72291354-72291373 Msa0090320:CDS 30.0%
ACTTCTCAATAAGAGAATTG+AGG + chr1_2:72291628-72291647 Msa0090320:intron 30.0%
AATAAGAGAATTGAGGTTTG+TGG + chr1_2:72291635-72291654 Msa0090320:intron 30.0%
AACATTGAAGCTTACAAGAT+TGG + chr1_2:72291733-72291752 Msa0090320:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG + chr1_2:72291734-72291753 Msa0090320:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG - chr1_2:72291799-72291818 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG - chr1_2:72291800-72291819 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG + chr1_2:72291802-72291821 Msa0090320:CDS 30.0%
TTACTTTACAAACACAACTG+CGG + chr1_2:72292495-72292514 Msa0090320:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG + chr1_2:72292614-72292633 Msa0090320:CDS 30.0%
CAAGAATGTGATCTTTCTAA+AGG + chr1_2:72290461-72290480 Msa0090320:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG + chr1_2:72290463-72290482 Msa0090320:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG + chr1_2:72290911-72290930 Msa0090320:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG + chr1_2:72290923-72290942 Msa0090320:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG + chr1_2:72290931-72290950 Msa0090320:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG + chr1_2:72290980-72290999 Msa0090320:CDS 30.0%
! GAAAAAGATCATGTTTGTTG+GGG + chr1_2:72290981-72291000 Msa0090320:CDS 30.0%
! GTAAAGGTGTAATTTGATTC+TGG - chr1_2:72291063-72291082 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG + chr1_2:72291098-72291117 Msa0090320:CDS 30.0%
GTCGCATTATTATGTGTTAT+AGG + chr1_2:72291202-72291221 Msa0090320:intron 30.0%
AGTATGAAGTTTCAATAGTG+TGG + chr1_2:72291225-72291244 Msa0090320:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG + chr1_2:72291226-72291245 Msa0090320:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG + chr1_2:72291354-72291373 Msa0090320:CDS 30.0%
ACTTCTCAATAAGAGAATTG+AGG + chr1_2:72291628-72291647 Msa0090320:intron 30.0%
AATAAGAGAATTGAGGTTTG+TGG + chr1_2:72291635-72291654 Msa0090320:intron 30.0%
AACATTGAAGCTTACAAGAT+TGG + chr1_2:72291733-72291752 Msa0090320:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG + chr1_2:72291734-72291753 Msa0090320:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG - chr1_2:72291799-72291818 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG - chr1_2:72291800-72291819 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG + chr1_2:72291802-72291821 Msa0090320:CDS 30.0%
TTACTTTACAAACACAACTG+CGG + chr1_2:72292495-72292514 Msa0090320:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG + chr1_2:72292614-72292633 Msa0090320:CDS 30.0%
ACACACATTCGTTCTTCTAT+GGG + chr1_2:72290406-72290425 Msa0090320:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG + chr1_2:72290469-72290488 Msa0090320:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG - chr1_2:72290542-72290561 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG + chr1_2:72290554-72290573 Msa0090320:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG + chr1_2:72290945-72290964 Msa0090320:CDS 35.0%
! CAAACATGATCTTTTTCCCT+CGG - chr1_2:72290978-72290997 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG + chr1_2:72290979-72290998 Msa0090320:CDS 35.0%
ACTCTATAAGCGACAATATG+TGG + chr1_2:72291004-72291023 Msa0090320:CDS 35.0%
GAATTGAGGTTTGTGGATAT+TGG + chr1_2:72291642-72291661 Msa0090320:intron 35.0%
ATCAATCCAATTAGACCAAG+TGG - chr1_2:72291764-72291783 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG + chr1_2:72292019-72292038 Msa0090320:intron 35.0%
AACTAACCAAAAGCAAACAG+TGG - chr1_2:72292028-72292047 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG + chr1_2:72292053-72292072 Msa0090320:intron 35.0%
! CAATATGACCAACTTTTGCA+TGG - chr1_2:72292064-72292083 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG - chr1_2:72292599-72292618 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG - chr1_2:72292600-72292619 None:intergenic 35.0%
ACACACATTCGTTCTTCTAT+GGG + chr1_2:72290406-72290425 Msa0090320:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG + chr1_2:72290469-72290488 Msa0090320:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG - chr1_2:72290542-72290561 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG + chr1_2:72290554-72290573 Msa0090320:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG + chr1_2:72290945-72290964 Msa0090320:CDS 35.0%
! CAAACATGATCTTTTTCCCT+CGG - chr1_2:72290978-72290997 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG + chr1_2:72290979-72290998 Msa0090320:CDS 35.0%
ACTCTATAAGCGACAATATG+TGG + chr1_2:72291004-72291023 Msa0090320:CDS 35.0%
GAATTGAGGTTTGTGGATAT+TGG + chr1_2:72291642-72291661 Msa0090320:intron 35.0%
ATCAATCCAATTAGACCAAG+TGG - chr1_2:72291764-72291783 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG + chr1_2:72292019-72292038 Msa0090320:intron 35.0%
AACTAACCAAAAGCAAACAG+TGG - chr1_2:72292028-72292047 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG + chr1_2:72292053-72292072 Msa0090320:intron 35.0%
! CAATATGACCAACTTTTGCA+TGG - chr1_2:72292064-72292083 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG - chr1_2:72292599-72292618 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG - chr1_2:72292600-72292619 None:intergenic 35.0%
CATAGAAGAACGAATGTGTG+TGG - chr1_2:72290407-72290426 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG + chr1_2:72290405-72290424 Msa0090320:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG + chr1_2:72290468-72290487 Msa0090320:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG - chr1_2:72290506-72290525 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG - chr1_2:72290528-72290547 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG + chr1_2:72290533-72290552 Msa0090320:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG - chr1_2:72290617-72290636 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG + chr1_2:72290615-72290634 Msa0090320:CDS 40.0%
AATTAGGAAAGAGTGGAGAG+TGG - chr1_2:72290664-72290683 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG + chr1_2:72290958-72290977 Msa0090320:CDS 40.0%
AATTCTTGGAGACATACCGA+GGG + chr1_2:72290959-72290978 Msa0090320:CDS 40.0%
TCAATAGTGTGGGTGAAAGA+TGG + chr1_2:72291236-72291255 Msa0090320:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG + chr1_2:72291237-72291256 Msa0090320:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG + chr1_2:72291271-72291290 Msa0090320:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG + chr1_2:72291272-72291291 Msa0090320:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG + chr1_2:72291306-72291325 Msa0090320:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG - chr1_2:72291366-72291385 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG + chr1_2:72291365-72291384 Msa0090320:CDS 40.0%
! ATCCACAGACACTTTCAAGT+GGG + chr1_2:72291685-72291704 Msa0090320:intron 40.0%
ACAAGATTGGGTTAACCACT+TGG + chr1_2:72291746-72291765 Msa0090320:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG + chr1_2:72291755-72291774 Msa0090320:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG + chr1_2:72292370-72292389 Msa0090320:intron 40.0%
TTCTGAACAATGTCTACACC+AGG - chr1_2:72292434-72292453 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG - chr1_2:72292532-72292551 None:intergenic 40.0%
CATAGAAGAACGAATGTGTG+TGG - chr1_2:72290407-72290426 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG + chr1_2:72290405-72290424 Msa0090320:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG + chr1_2:72290468-72290487 Msa0090320:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG - chr1_2:72290506-72290525 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG - chr1_2:72290528-72290547 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG + chr1_2:72290533-72290552 Msa0090320:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG - chr1_2:72290617-72290636 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG + chr1_2:72290615-72290634 Msa0090320:CDS 40.0%
AATTAGGAAAGAGTGGAGAG+TGG - chr1_2:72290664-72290683 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG + chr1_2:72290958-72290977 Msa0090320:CDS 40.0%
AATTCTTGGAGACATACCGA+GGG + chr1_2:72290959-72290978 Msa0090320:CDS 40.0%
TCAATAGTGTGGGTGAAAGA+TGG + chr1_2:72291236-72291255 Msa0090320:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG + chr1_2:72291237-72291256 Msa0090320:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG + chr1_2:72291271-72291290 Msa0090320:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG + chr1_2:72291272-72291291 Msa0090320:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG + chr1_2:72291306-72291325 Msa0090320:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG - chr1_2:72291366-72291385 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG + chr1_2:72291365-72291384 Msa0090320:CDS 40.0%
! ATCCACAGACACTTTCAAGT+GGG + chr1_2:72291685-72291704 Msa0090320:intron 40.0%
ACAAGATTGGGTTAACCACT+TGG + chr1_2:72291746-72291765 Msa0090320:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG + chr1_2:72291755-72291774 Msa0090320:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG + chr1_2:72292370-72292389 Msa0090320:intron 40.0%
TTCTGAACAATGTCTACACC+AGG - chr1_2:72292434-72292453 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG - chr1_2:72292532-72292551 None:intergenic 40.0%
ATTCGTTCTTCTATGGGCAG+TGG + chr1_2:72290412-72290431 Msa0090320:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG - chr1_2:72290440-72290459 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG + chr1_2:72290510-72290529 Msa0090320:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG - chr1_2:72290514-72290533 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG + chr1_2:72290511-72290530 Msa0090320:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG - chr1_2:72290515-72290534 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG + chr1_2:72290532-72290551 Msa0090320:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG + chr1_2:72291253-72291272 Msa0090320:CDS 45.0%
TATCACGAACCGTATCCACT+AGG - chr1_2:72291265-72291284 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG - chr1_2:72291318-72291337 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG + chr1_2:72291320-72291339 Msa0090320:CDS 45.0%
CATCCACAGACACTTTCAAG+TGG + chr1_2:72291684-72291703 Msa0090320:intron 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG - chr1_2:72291690-72291709 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG + chr1_2:72291824-72291843 Msa0090320:CDS 45.0%
! TCTGGAACAAACTAAGCCAG+AGG + chr1_2:72292388-72292407 Msa0090320:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG + chr1_2:72292392-72292411 Msa0090320:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG - chr1_2:72292425-72292444 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG + chr1_2:72292503-72292522 Msa0090320:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG + chr1_2:72292524-72292543 Msa0090320:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG - chr1_2:72292533-72292552 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG + chr1_2:72292530-72292549 Msa0090320:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG + chr1_2:72292544-72292563 Msa0090320:CDS 45.0%
ATTCGTTCTTCTATGGGCAG+TGG + chr1_2:72290412-72290431 Msa0090320:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG - chr1_2:72290440-72290459 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG + chr1_2:72290510-72290529 Msa0090320:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG - chr1_2:72290514-72290533 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG + chr1_2:72290511-72290530 Msa0090320:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG - chr1_2:72290515-72290534 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG + chr1_2:72290532-72290551 Msa0090320:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG + chr1_2:72291253-72291272 Msa0090320:CDS 45.0%
TATCACGAACCGTATCCACT+AGG - chr1_2:72291265-72291284 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG - chr1_2:72291318-72291337 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG + chr1_2:72291320-72291339 Msa0090320:CDS 45.0%
CATCCACAGACACTTTCAAG+TGG + chr1_2:72291684-72291703 Msa0090320:intron 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG - chr1_2:72291690-72291709 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG + chr1_2:72291824-72291843 Msa0090320:CDS 45.0%
! TCTGGAACAAACTAAGCCAG+AGG + chr1_2:72292388-72292407 Msa0090320:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG + chr1_2:72292392-72292411 Msa0090320:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG - chr1_2:72292425-72292444 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG + chr1_2:72292503-72292522 Msa0090320:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG + chr1_2:72292524-72292543 Msa0090320:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG - chr1_2:72292533-72292552 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG + chr1_2:72292530-72292549 Msa0090320:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG + chr1_2:72292544-72292563 Msa0090320:CDS 45.0%
!!! TAAAAATCATATTTAAAATT+AGG - chr1_2:72290680-72290699 None:intergenic 5.0%
!! ATAAAAAATGATATATTTAT+GGG - chr1_2:72291912-72291931 None:intergenic 5.0%
!! AATAAAAAATGATATATTTA+TGG - chr1_2:72291913-72291932 None:intergenic 5.0%
!!! TAAAAATCATATTTAAAATT+AGG - chr1_2:72290680-72290699 None:intergenic 5.0%
!! ATAAAAAATGATATATTTAT+GGG - chr1_2:72291912-72291931 None:intergenic 5.0%
!! AATAAAAAATGATATATTTA+TGG - chr1_2:72291913-72291932 None:intergenic 5.0%
GGTGAAAGATGGGTACCTAG+TGG + chr1_2:72291247-72291266 Msa0090320:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG + chr1_2:72291315-72291334 Msa0090320:CDS 50.0%
GGAATTGCTGCTGCACATTC+AGG + chr1_2:72291823-72291842 Msa0090320:CDS 50.0%
GGATCAAAGCCAGCATATCC+TGG + chr1_2:72292413-72292432 Msa0090320:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG + chr1_2:72292558-72292577 Msa0090320:CDS 50.0%
GGTGAAAGATGGGTACCTAG+TGG + chr1_2:72291247-72291266 Msa0090320:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG + chr1_2:72291315-72291334 Msa0090320:CDS 50.0%
GGAATTGCTGCTGCACATTC+AGG + chr1_2:72291823-72291842 Msa0090320:CDS 50.0%
GGATCAAAGCCAGCATATCC+TGG + chr1_2:72292413-72292432 Msa0090320:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG + chr1_2:72292558-72292577 Msa0090320:CDS 50.0%
!! GCTGGCTTTGATCCTTCCTC+TGG - chr1_2:72292407-72292426 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG + chr1_2:72292569-72292588 Msa0090320:CDS 55.0%
!! GCTGGCTTTGATCCTTCCTC+TGG - chr1_2:72292407-72292426 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG + chr1_2:72292569-72292588 Msa0090320:CDS 55.0%
TAGCTGGTGCTCCCGACACT+TGG + chr1_2:72292585-72292604 Msa0090320:CDS 60.0%
TAGCTGGTGCTCCCGACACT+TGG + chr1_2:72292585-72292604 Msa0090320:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72290338 72292661 72290338 ID=Msa0090320;Name=Msa0090320
chr1_2 mRNA 72290338 72292661 72290338 ID=Msa0090320-mRNA-1;Parent=Msa0090320;Name=Msa0090320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|362
chr1_2 exon 72290338 72290636 72290338 ID=Msa0090320-mRNA-1:exon:25079;Parent=Msa0090320-mRNA-1
chr1_2 exon 72290945 72291119 72290945 ID=Msa0090320-mRNA-1:exon:25080;Parent=Msa0090320-mRNA-1
chr1_2 exon 72291224 72291399 72291224 ID=Msa0090320-mRNA-1:exon:25081;Parent=Msa0090320-mRNA-1
chr1_2 exon 72291693 72291845 72291693 ID=Msa0090320-mRNA-1:exon:25082;Parent=Msa0090320-mRNA-1
chr1_2 exon 72292376 72292661 72292376 ID=Msa0090320-mRNA-1:exon:25083;Parent=Msa0090320-mRNA-1
chr1_2 CDS 72290338 72290636 72290338 ID=Msa0090320-mRNA-1:cds;Parent=Msa0090320-mRNA-1
chr1_2 CDS 72290945 72291119 72290945 ID=Msa0090320-mRNA-1:cds;Parent=Msa0090320-mRNA-1
chr1_2 CDS 72291224 72291399 72291224 ID=Msa0090320-mRNA-1:cds;Parent=Msa0090320-mRNA-1
chr1_2 CDS 72291693 72291845 72291693 ID=Msa0090320-mRNA-1:cds;Parent=Msa0090320-mRNA-1
chr1_2 CDS 72292376 72292661 72292376 ID=Msa0090320-mRNA-1:cds;Parent=Msa0090320-mRNA-1
Gene Sequence

>Msa0090320

ATGGTTTGGTTTGGAAAGATTTTAAGACAATATCAAATGACATTGGATTTCTTGTTACATCTTCTGCCACACACATTCGTTCTTCTATGGGCAGTGGCACCTACACTGTACTATGTGCATGCTCAAGAATGTGATCTTTCTAAAGGGGAATGGGTTGTTGATGATCCATACTACCCTCTTTATGATGCCTCAAGGGACTGTCCTTTTATAGTGCAGGGATTTGATTGTCTCAGAAATGGTAGACCAGATCAAGATTATCTCAAATATAGATGGAAACCTTTTGCATGTGATCTTCCAAGGTTTGATGGTGTGAAATTCTTGGAGACATACCGAGGGAAAAAGATCATGTTTGTTGGGGACTCTATAAGCGACAATATGTGGCAGTCACTTGCTTGTTTGCTTCACATTGCAGTGCCAGAATCAAATTACACCTTTACAAGACTAACAAAACATCTTTCTATGTTCAGATTTCTGGAGTATGAAGTTTCAATAGTGTGGGTGAAAGATGGGTACCTAGTGGATACGGTTCGTGATAGAGAAAAGGGAAGAATTATAAAACTTGACTCCGTTTCATCTCGGTACAAGTGGAATGGAGATGTTTTGATTTTCAATACCTATCATTGGTGGTTTCACACAGGACAGACTCCAATACACTTTCAAGTGGGAAATGAGATAATGAAAGACATGGATAACATTGAAGCTTACAAGATTGGGTTAACCACTTGGTCTAATTGGATTGATTCTAACATTGATCCCTCAAAGACTACTGTTATCTTTCAAGGAATTGCTGCTGCACATTCAGGGGAAAAACACTGTCTGGAACAAACTAAGCCAGAGGAAGGATCAAAGCCAGCATATCCTGGTGTAGACATTGTTCAGAATGTTTTGAGTAACATGAAAAGTCATGTTTATTGGCTTGACATTACTTTACAAACACAACTGCGGATAGATGGTCACCCTTCTATATTCACTGGTCGAGGAACTTCTTATGAGGACTGCAGTCACTGGTGTCTAGCTGGTGCTCCCGACACTTGGAATGAAATGTTGTATGCTGTTTTACTAGGAAATCAATATTATCGTCATTTGTAA
Protein sequence

>Msa0090320

MVWFGKILRQYQMTLDFLLHLLPHTFVLLWAVAPTLYYVHAQECDLSKGEWVVDDPYYPLYDASRDCPFIVQGFDCLRNGRPDQDYLKYRWKPFACDLPRFDGVKFLETYRGKKIMFVGDSISDNMWQSLACLLHIAVPESNYTFTRLTKHLSMFRFLEYEVSIVWVKDGYLVDTVRDREKGRIIKLDSVSSRYKWNGDVLIFNTYHWWFHTGQTPIHFQVGNEIMKDMDNIEAYKIGLTTWSNWIDSNIDPSKTTVIFQGIAAAHSGEKHCLEQTKPEEGSKPAYPGVDIVQNVLSNMKSHVYWLDITLQTQLRIDGHPSIFTGRGTSYEDCSHWCLAGAPDTWNEMLYAVLLGNQYYRHL*