AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182740 MtrunA17_Chr1g0209921 97.388 268 7 0 1 268 1 268 0.0 549
Msa0182740 MtrunA17_Chr2g0314791 64.000 350 114 5 13 354 1 346 1.22e-162 459
Msa0182740 MtrunA17_Chr2g0314801 47.207 358 165 9 15 353 1 353 3.55e-110 325
Msa0182740 MtrunA17_Chr3g0097891 48.138 349 158 10 22 354 10 351 4.46e-107 318
Msa0182740 MtrunA17_Chr2g0283581 48.780 328 149 10 39 353 37 358 2.03e-100 301
Msa0182740 MtrunA17_Chr4g0045941 45.584 351 170 11 17 354 9 351 2.48e-99 298
Msa0182740 MtrunA17_Chr4g0045951 46.429 336 162 10 32 354 33 363 6.43e-97 292
Msa0182740 MtrunA17_Chr3g0085071 45.045 333 163 9 35 353 37 363 4.14e-95 288
Msa0182740 MtrunA17_Chr3g0085081 45.266 338 163 10 31 353 18 348 2.23e-94 285
Msa0182740 MtrunA17_Chr5g0413851 45.783 332 160 10 39 356 37 362 6.96e-94 284
Msa0182740 MtrunA17_Chr2g0325481 46.526 331 152 11 41 355 47 368 1.38e-93 284
Msa0182740 MtrunA17_Chr3g0091031 44.510 337 167 9 31 353 18 348 2.04e-93 283
Msa0182740 MtrunA17_Chr4g0041011 45.732 328 155 10 41 353 44 363 1.53e-91 278
Msa0182740 MtrunA17_Chr3g0105301 41.329 346 169 11 39 354 36 377 4.80e-85 262
Msa0182740 MtrunA17_Chr5g0430371 41.341 358 169 11 34 354 47 400 1.65e-83 259
Msa0182740 MtrunA17_Chr4g0068111 39.884 346 170 11 43 354 113 454 1.54e-78 248
Msa0182740 MtrunA17_Chr1g0171171 39.759 332 175 10 41 353 50 375 9.11e-78 243
Msa0182740 MtrunA17_Chr7g0258851 38.682 349 178 12 43 358 247 592 1.25e-77 249
Msa0182740 MtrunA17_Chr1g0210771 40.361 332 172 12 42 353 57 382 4.52e-77 242
Msa0182740 MtrunA17_Chr1g0175671 39.420 345 173 12 43 354 169 510 4.91e-77 246
Msa0182740 MtrunA17_Chr7g0269991 39.759 332 171 11 44 350 137 464 3.90e-75 239
Msa0182740 MtrunA17_Chr4g0006991 36.127 346 185 10 42 353 84 427 1.03e-70 227
Msa0182740 MtrunA17_Chr4g0071391 36.888 347 185 12 42 357 107 450 3.68e-69 224
Msa0182740 MtrunA17_Chr1g0213281 38.261 345 176 11 44 354 175 516 1.39e-68 224
Msa0182740 MtrunA17_Chr5g0413271 36.070 341 184 11 42 354 143 477 2.33e-68 223
Msa0182740 MtrunA17_Chr8g0360521 33.333 345 195 9 44 356 71 412 6.75e-67 217
Msa0182740 MtrunA17_Chr3g0126021 36.364 341 188 12 39 354 124 460 2.25e-66 217
Msa0182740 MtrunA17_Chr8g0368461 35.196 358 181 12 43 354 177 529 2.43e-66 218
Msa0182740 MtrunA17_Chr7g0259711 37.006 354 185 13 41 359 88 438 4.19e-65 213
Msa0182740 MtrunA17_Chr3g0113671 35.429 350 188 10 42 355 104 451 8.78e-65 212
Msa0182740 MtrunA17_Chr4g0005481 34.682 346 193 8 39 353 103 446 2.31e-64 211
Msa0182740 MtrunA17_Chr7g0242701 34.670 349 188 10 41 353 83 427 2.95e-64 210
Msa0182740 MtrunA17_Chr1g0209931 93.750 96 6 0 267 362 6 101 4.45e-62 194
Msa0182740 MtrunA17_Chr2g0287901 38.150 346 175 12 44 354 97 438 1.04e-61 204
Msa0182740 MtrunA17_Chr3g0114101 35.143 350 181 11 44 354 89 431 6.25e-61 201
Msa0182740 MtrunA17_Chr8g0384151 36.391 338 182 13 42 354 88 417 1.61e-60 201
Msa0182740 MtrunA17_Chr4g0005491 31.868 364 206 10 30 354 48 408 2.01e-60 199
Msa0182740 MtrunA17_Chr5g0437291 33.994 353 192 11 42 355 163 513 2.39e-58 197
Msa0182740 MtrunA17_Chr5g0437601 33.333 345 194 10 44 354 83 425 1.95e-56 190
Msa0182740 MtrunA17_Chr7g0243301 30.899 356 204 10 39 355 59 411 1.13e-55 187
Msa0182740 MtrunA17_Chr1g0178081 30.854 363 181 14 17 358 33 346 3.85e-44 155
Msa0182740 MtrunA17_Chr1g0188191 31.044 364 181 15 44 353 234 581 4.20e-37 140
Msa0182740 MtrunA17_Chr6g0476041 27.793 367 189 14 44 353 167 514 2.86e-34 132
Msa0182740 MtrunA17_Chr4g0049421 28.011 357 200 15 44 354 48 393 3.26e-33 127
Msa0182740 MtrunA17_Chr6g0456681 27.528 356 211 12 39 353 59 408 1.19e-31 123
Msa0182740 MtrunA17_Chr5g0414061 28.409 352 211 12 40 353 90 438 2.12e-31 123
Msa0182740 MtrunA17_Chr2g0283851 29.444 360 189 18 45 353 56 401 7.10e-31 121
Msa0182740 MtrunA17_Chr6g0456691 27.966 354 203 13 42 353 76 419 9.02e-31 121
Msa0182740 MtrunA17_Chr8g0384421 28.490 351 203 13 42 353 131 472 3.83e-30 120
Msa0182740 MtrunA17_Chr5g0414091 28.142 366 212 15 32 353 73 431 3.91e-28 114
Msa0182740 MtrunA17_Chr6g0451321 27.374 358 218 13 33 353 105 457 4.78e-28 114
Msa0182740 MtrunA17_Chr6g0455901 25.648 347 214 11 43 349 70 412 6.36e-27 110
Msa0182740 MtrunA17_Chr3g0140371 27.778 360 209 15 44 361 18 368 1.18e-26 108
Msa0182740 MtrunA17_Chr7g0226991 27.424 361 212 11 42 359 55 408 2.36e-26 108
Msa0182740 MtrunA17_Chr8g0347321 26.944 360 208 16 41 355 92 441 1.01e-25 107
Msa0182740 MtrunA17_Chr4g0070341 27.066 351 208 12 42 353 130 471 4.87e-24 102
Msa0182740 MtrunA17_Chr8g0391481 27.374 358 208 13 40 353 23 372 7.56e-24 101
Msa0182740 MtrunA17_Chr5g0414041 27.401 354 206 15 44 353 87 433 8.12e-24 102
Msa0182740 MtrunA17_Chr7g0221291 42.478 113 63 2 23 135 58 168 1.28e-23 95.9
Msa0182740 MtrunA17_Chr8g0387921 25.281 356 216 14 43 355 73 421 3.11e-22 97.1
Msa0182740 MtrunA17_Chr7g0221271 44.118 102 51 2 35 134 70 167 3.53e-22 93.2
Msa0182740 MtrunA17_Chr5g0414051 42.727 110 55 3 31 134 56 163 1.61e-20 92.4
Msa0182740 MtrunA17_Chr3g0085101 40.952 105 51 2 229 322 1 105 1.57e-19 83.2
Msa0182740 MtrunA17_Chr5g0429211 43.421 76 42 1 100 175 194 268 2.28e-11 63.9
Msa0182740 MtrunA17_Chr2g0287931 34.188 117 64 5 106 209 2 118 2.36e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182740 AT1G78710.1 51.205 332 141 9 38 354 32 357 4.46e-116 341
Msa0182740 AT2G30900.1 47.706 327 152 8 44 354 43 366 1.00e-102 307
Msa0182740 AT1G29050.1 46.341 328 156 11 40 353 57 378 8.12e-96 290
Msa0182740 AT2G34070.1 46.769 325 152 10 44 353 65 383 1.34e-95 290
Msa0182740 AT3G14850.2 45.921 331 156 10 41 354 31 355 1.80e-94 286
Msa0182740 AT2G42570.1 46.246 333 157 10 39 356 42 367 9.75e-94 285
Msa0182740 AT2G31110.2 45.399 326 156 11 43 353 44 362 7.76e-91 277
Msa0182740 AT1G78710.2 44.582 323 123 9 38 354 25 297 9.75e-89 269
Msa0182740 AT3G54260.1 43.544 333 162 11 44 356 51 377 2.51e-82 256
Msa0182740 AT5G58600.1 42.105 342 161 12 44 354 66 401 1.21e-80 252
Msa0182740 AT2G30010.1 41.737 357 163 13 36 354 48 397 2.55e-80 251
Msa0182740 AT2G30010.2 41.737 357 163 13 36 354 91 440 8.62e-80 251
Msa0182740 AT3G62390.1 41.471 340 169 12 42 354 136 472 4.91e-79 250
Msa0182740 AT5G49340.1 38.506 348 172 10 44 354 100 442 1.95e-78 248
Msa0182740 AT2G30900.2 52.252 222 99 6 44 261 43 261 2.81e-74 231
Msa0182740 AT3G12060.1 38.150 346 178 11 42 354 194 536 2.62e-72 235
Msa0182740 AT5G20590.1 39.003 341 177 14 44 354 141 480 1.63e-71 231
Msa0182740 AT5G06700.1 36.994 346 182 13 42 354 253 595 9.54e-71 232
Msa0182740 AT5G01360.2 35.159 347 188 9 42 353 34 378 2.27e-70 225
Msa0182740 AT5G01360.1 35.159 347 188 9 42 353 90 434 1.15e-69 224
Msa0182740 AT1G60790.1 36.752 351 179 11 42 354 188 533 2.63e-69 227
Msa0182740 AT2G31110.3 47.845 232 111 8 43 271 44 268 3.14e-68 216
Msa0182740 AT1G73140.1 33.623 345 194 9 42 354 65 406 2.98e-67 218
Msa0182740 AT1G48880.1 37.685 337 183 11 39 354 110 440 2.28e-66 216
Msa0182740 AT2G34070.2 44.664 253 121 8 116 353 1 249 9.23e-65 206
Msa0182740 AT3G55990.1 35.143 350 189 9 42 355 138 485 1.17e-63 211
Msa0182740 AT5G06230.2 35.754 358 184 12 41 358 18 369 3.93e-62 203
Msa0182740 AT5G19160.1 37.535 357 177 16 44 359 99 450 4.02e-62 206
Msa0182740 AT3G14850.1 44.048 252 120 8 116 350 1 248 4.14e-62 199
Msa0182740 AT5G06230.1 35.754 358 184 12 41 358 59 410 8.39e-62 204
Msa0182740 AT3G06080.2 37.536 349 181 14 44 357 103 449 6.24e-61 203
Msa0182740 AT2G40160.2 34.819 359 175 12 44 354 77 424 2.29e-60 201
Msa0182740 AT2G40160.1 34.746 354 172 12 44 349 77 419 9.85e-60 199
Msa0182740 AT5G01620.2 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0182740 AT5G01620.1 32.394 355 200 11 34 353 100 449 1.43e-59 199
Msa0182740 AT5G01620.3 32.394 355 200 11 34 353 108 457 2.14e-59 199
Msa0182740 AT2G40320.1 33.524 349 192 11 42 354 79 423 2.85e-57 192
Msa0182740 AT3G11570.1 36.420 324 174 11 66 358 102 424 3.69e-57 192
Msa0182740 AT2G40150.1 32.773 357 196 11 43 357 70 424 4.39e-57 192
Msa0182740 AT2G38320.1 32.955 352 196 12 41 354 56 405 6.66e-56 188
Msa0182740 AT3G11030.1 33.621 348 194 11 42 354 104 449 1.58e-55 188
Msa0182740 AT5G58600.2 44.298 228 118 8 44 266 66 289 1.77e-55 184
Msa0182740 AT3G62390.2 41.057 246 128 7 42 273 136 378 2.46e-55 187
Msa0182740 AT5G20590.2 39.241 237 129 8 44 266 141 376 1.44e-51 176
Msa0182740 AT2G38320.2 32.177 317 176 11 76 354 7 322 3.87e-46 160
Msa0182740 AT2G40160.3 36.475 244 124 6 44 266 77 310 2.26e-45 158
Msa0182740 AT5G19160.2 39.076 238 128 8 44 266 99 334 3.13e-45 159
Msa0182740 AT2G31110.1 41.905 210 103 7 159 353 9 214 3.47e-44 152
Msa0182740 AT3G06080.1 39.496 238 127 9 44 266 103 338 1.70e-43 154
Msa0182740 AT5G06230.3 35.060 251 132 8 41 266 59 303 1.08e-40 145
Msa0182740 AT5G64470.3 28.857 350 205 12 44 356 55 397 1.22e-35 134
Msa0182740 AT3G28150.1 30.286 350 197 11 43 353 69 410 2.13e-35 134
Msa0182740 AT5G64470.2 28.652 356 204 13 44 356 55 403 5.06e-35 132
Msa0182740 AT4G25360.1 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0182740 AT4G25360.2 29.640 361 194 14 43 353 174 524 1.13e-34 134
Msa0182740 AT5G51640.1 28.809 361 198 13 43 353 137 488 1.21e-34 133
Msa0182740 AT2G14530.1 28.652 356 203 11 41 353 59 406 2.17e-34 131
Msa0182740 AT1G70230.1 29.155 343 200 16 44 353 79 411 8.71e-32 124
Msa0182740 AT1G01430.1 28.689 366 210 14 41 361 96 455 6.36e-31 122
Msa0182740 AT4G01080.1 28.011 357 211 14 39 357 86 434 5.83e-29 117
Msa0182740 AT3G02440.1 28.531 354 197 15 44 353 127 468 8.53e-28 114
Msa0182740 AT3G02440.2 28.531 354 197 15 44 353 135 476 1.02e-27 114
Msa0182740 AT2G37720.1 27.171 357 216 13 34 353 133 482 3.66e-27 112
Msa0182740 AT5G15900.2 28.771 358 192 16 44 353 86 428 1.85e-26 109
Msa0182740 AT5G15900.1 28.771 358 192 16 44 353 67 409 1.90e-26 109
Msa0182740 AT5G20680.6 26.404 356 204 14 42 353 116 457 1.43e-25 107
Msa0182740 AT5G20680.4 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0182740 AT5G20680.1 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0182740 AT5G20680.3 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0182740 AT5G20680.5 26.816 358 200 15 42 353 210 551 1.58e-25 108
Msa0182740 AT5G20680.2 26.816 358 200 15 42 353 192 533 1.67e-25 107
Msa0182740 AT5G64020.1 27.528 356 208 13 44 353 57 408 4.58e-25 105
Msa0182740 AT5G15890.1 27.841 352 200 13 42 353 185 522 5.16e-25 106
Msa0182740 AT4G11090.1 24.722 360 226 11 39 357 74 429 1.10e-23 102
Msa0182740 AT4G23790.1 26.593 361 216 12 39 355 74 429 6.02e-23 99.8
Msa0182740 AT5G64470.4 28.395 243 149 9 44 266 55 292 1.01e-20 92.0
Msa0182740 AT5G64470.1 28.395 243 149 9 44 266 55 292 1.14e-20 92.0

Find 78 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTATGTTCAGATTTC+TGG 0.137068 1_4:-71559442 Msa0182740:intron
CACACACATTCGTTCTTCTA+TGG 0.191029 1_4:-71560110 Msa0182740:CDS
GGTTAACCACTTGGTCTAAT+TGG 0.192861 1_4:-71558785 Msa0182740:CDS
ACATGAAAAGTCATGTTTAT+TGG 0.227466 1_4:-71558076 Msa0182740:CDS
TCAAATCCCTGCACTATAAA+AGG 0.249740 1_4:+71559976 None:intergenic
GGAATTGCTGCTGCACATTC+AGG 0.255467 1_4:-71558717 Msa0182740:CDS
GTAAAGGTGTAATTTGATTC+TGG 0.257863 1_4:+71559480 None:intergenic
CAAACAATCATGGTTTGGTT+TGG 0.329748 1_4:-71560186 None:intergenic
AACATTGAAGCTTACAAGAT+TGG 0.344348 1_4:-71558807 Msa0182740:CDS
AAGACTACTGTTATCTTTCA+AGG 0.351212 1_4:-71558738 Msa0182740:CDS
CCTCGACCAGTGAATATAGA+AGG 0.368131 1_4:+71558011 None:intergenic
GCATCATAAAGAGGGTAGTA+TGG 0.369410 1_4:+71560012 None:intergenic
GTTTGATGGTGTGAAATTCT+TGG 0.383916 1_4:-71559595 Msa0182740:CDS
AAGATTATCTCAAATATAGA+TGG 0.394741 1_4:-71559927 Msa0182740:CDS
GCTGGCTTTGATCCTTCCTC+TGG 0.398684 1_4:+71558137 None:intergenic
AATGGCAAACAATCATGGTT+TGG 0.409245 1_4:-71560191 None:intergenic
AAGAATGTGATCTTTCTAAA+GGG 0.412927 1_4:-71560053 Msa0182740:CDS
TGGTTAATTAACAGGTTTGA+TGG 0.414245 1_4:-71559609 Msa0182740:intron
ACATTGAAGCTTACAAGATT+GGG 0.421501 1_4:-71558806 Msa0182740:CDS
AAAGATAACAGTAGTCTTTG+AGG 0.421554 1_4:+71558743 None:intergenic
TGCAGTCACTGGTGTCTAGC+TGG 0.427585 1_4:-71557972 Msa0182740:CDS
AACATTTCATTCCAAGTGTC+GGG 0.442071 1_4:+71557945 None:intergenic
CAAACACAACTGCGGATAGA+TGG 0.442377 1_4:-71558038 Msa0182740:CDS
TGATCTTTCTAAAGGGGAAT+GGG 0.444301 1_4:-71560046 Msa0182740:CDS
GGATTTGATTGTCTCAGAAA+TGG 0.453425 1_4:-71559961 Msa0182740:CDS
CAAGAATGTGATCTTTCTAA+AGG 0.455361 1_4:-71560054 Msa0182740:CDS
TCAATAGTGTGGGTGAAAGA+TGG 0.461620 1_4:-71559304 Msa0182740:CDS
TAGCTGGTGCTCCCGACACT+TGG 0.461664 1_4:-71557956 Msa0182740:CDS
TATTTGAGATAATCTTGATC+TGG 0.461942 1_4:+71559934 None:intergenic
TACGGTTCGTGATAGAGAAA+AGG 0.466498 1_4:-71559269 Msa0182740:CDS
GTGATCTTTCTAAAGGGGAA+TGG 0.466637 1_4:-71560047 Msa0182740:CDS
CTTGGAAGATCACATGCAAA+AGG 0.466690 1_4:+71559901 None:intergenic
AGTATGAAGTTTCAATAGTG+TGG 0.498044 1_4:-71559315 Msa0182740:CDS
GAATTGCTGCTGCACATTCA+GGG 0.500253 1_4:-71558716 Msa0182740:intron
ACACACATTCGTTCTTCTAT+GGG 0.503042 1_4:-71560109 Msa0182740:CDS
GGATCAAAGCCAGCATATCC+TGG 0.505064 1_4:-71558128 Msa0182740:CDS
ACAAGATTGGGTTAACCACT+TGG 0.507566 1_4:-71558794 Msa0182740:CDS
CAATAGTGTGGGTGAAAGAT+GGG 0.508616 1_4:-71559303 Msa0182740:CDS
AAGATAACAGTAGTCTTTGA+GGG 0.513061 1_4:+71558744 None:intergenic
AAGACAATATCAAATGACAT+TGG 0.532659 1_4:-71560154 Msa0182740:CDS
ACTCTATAAGCGACAATATG+TGG 0.533074 1_4:-71559536 Msa0182740:CDS
CAACATTTCATTCCAAGTGT+CGG 0.533298 1_4:+71557944 None:intergenic
CCACTTGTACCGAGATGAAA+CGG 0.534358 1_4:+71559225 None:intergenic
TCCCTTGAGGCATCATAAAG+AGG 0.534577 1_4:+71560003 None:intergenic
ATGTCTACACCAGGATATGC+TGG 0.536979 1_4:+71558119 None:intergenic
TGGTCGAGGAACTTCTTATG+AGG 0.538598 1_4:-71557997 Msa0182740:CDS
ACGGTTCGTGATAGAGAAAA+GGG 0.539431 1_4:-71559268 Msa0182740:CDS
AACTTGACTCCGTTTCATCT+CGG 0.548645 1_4:-71559234 Msa0182740:CDS
CCCTCTTTATGATGCCTCAA+GGG 0.550562 1_4:-71560004 Msa0182740:CDS
TGTGTGAAACCACCAATGAT+AGG 0.556830 1_4:+71559177 None:intergenic
CTTATGAGGACTGCAGTCAC+TGG 0.559215 1_4:-71557983 Msa0182740:CDS
ATCAATCCAATTAGACCAAG+TGG 0.559355 1_4:+71558779 None:intergenic
AGATGGGTACCTAGTGGATA+CGG 0.563975 1_4:-71559287 Msa0182740:CDS
GGTCACCCTTCTATATTCAC+TGG 0.564907 1_4:-71558017 Msa0182740:CDS
CCGTTTCATCTCGGTACAAG+TGG 0.575787 1_4:-71559225 Msa0182740:CDS
ACCCTCTTTATGATGCCTCA+AGG 0.586390 1_4:-71560005 Msa0182740:CDS
CCTTCTATATTCACTGGTCG+AGG 0.587820 1_4:-71558011 Msa0182740:CDS
TCATCTCGGTACAAGTGGAA+TGG 0.589411 1_4:-71559220 Msa0182740:CDS
GTATGAAGTTTCAATAGTGT+GGG 0.591688 1_4:-71559314 Msa0182740:CDS
ATTCGTTCTTCTATGGGCAG+TGG 0.593313 1_4:-71560103 Msa0182740:CDS
AGAATGTGATCTTTCTAAAG+GGG 0.601354 1_4:-71560052 Msa0182740:CDS
AAATGAGATAATGAAAGACA+TGG 0.606612 1_4:-71558832 Msa0182740:CDS
CCCTTGAGGCATCATAAAGA+GGG 0.607432 1_4:+71560004 None:intergenic
GAACAAACTAAGCCAGAGGA+AGG 0.612792 1_4:-71558149 Msa0182740:CDS
CTCGACCAGTGAATATAGAA+GGG 0.620624 1_4:+71558012 None:intergenic
TTCTGAACAATGTCTACACC+AGG 0.627751 1_4:+71558110 None:intergenic
GCATGCACATAGTACAGTGT+AGG 0.634677 1_4:+71560078 None:intergenic
TATCACGAACCGTATCCACT+AGG 0.636942 1_4:+71559278 None:intergenic
CATCCACAGACACTTTCAAG+TGG 0.640996 1_4:-71558856 Msa0182740:intron
TATCATTGGTGGTTTCACAC+AGG 0.651059 1_4:-71559175 Msa0182740:CDS
ATCCACAGACACTTTCAAGT+GGG 0.658544 1_4:-71558855 Msa0182740:intron
TTACTTTACAAACACAACTG+CGG 0.678864 1_4:-71558046 Msa0182740:CDS
TCTGGAACAAACTAAGCCAG+AGG 0.698183 1_4:-71558153 Msa0182740:CDS
TATAAAAGGACAGTCCCTTG+AGG 0.699934 1_4:+71559990 None:intergenic
AAATTCTTGGAGACATACCG+AGG 0.705651 1_4:-71559582 Msa0182740:CDS
CATAGAAGAACGAATGTGTG+TGG 0.724411 1_4:+71560111 None:intergenic
AATTCTTGGAGACATACCGA+GGG 0.724500 1_4:-71559581 Msa0182740:CDS
GGTGAAAGATGGGTACCTAG+TGG 0.748513 1_4:-71559293 Msa0182740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTAAATATGTTTTTTTT+TGG - chr1_4:71559399-71559418 Msa0182740:intron 10.0%
!!! GATTTAAATATGTTTTTTTT+TGG - chr1_4:71559399-71559418 Msa0182740:intron 10.0%
!!! GATGCAATATTTATTTTTAT+TGG - chr1_4:71558319-71558338 Msa0182740:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG + chr1_4:71558352-71558371 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG + chr1_4:71558384-71558403 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG + chr1_4:71558678-71558697 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG - chr1_4:71559063-71559082 Msa0182740:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG + chr1_4:71559529-71559548 None:intergenic 15.0%
!! TTCTTCTCATTTAAAAAAAA+TGG + chr1_4:71559542-71559561 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG + chr1_4:71559862-71559881 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG + chr1_4:71559863-71559882 None:intergenic 15.0%
!!! GATGCAATATTTATTTTTAT+TGG - chr1_4:71558319-71558338 Msa0182740:intron 15.0%
!!! CAAACATTTTACATATTATA+AGG + chr1_4:71558352-71558371 None:intergenic 15.0%
!!! TTATTTTAGTCTTAATTTAG+TGG + chr1_4:71558384-71558403 None:intergenic 15.0%
!!! ATTTTCCTTTAATTTAAGAT+TGG + chr1_4:71558678-71558697 None:intergenic 15.0%
!!! AGTTAGTTTTTTCTTATTAT+TGG - chr1_4:71559063-71559082 Msa0182740:intron 15.0%
!! AAAAAAATGGTATATTTACA+AGG + chr1_4:71559529-71559548 None:intergenic 15.0%
!! TTCTTCTCATTTAAAAAAAA+TGG + chr1_4:71559542-71559561 None:intergenic 15.0%
!!! GTGAATTTTATAGTTAAAAT+GGG + chr1_4:71559862-71559881 None:intergenic 15.0%
!!! TGTGAATTTTATAGTTAAAA+TGG + chr1_4:71559863-71559882 None:intergenic 15.0%
!! AAGATTATCTCAAATATAGA+TGG - chr1_4:71558152-71558171 Msa0182740:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG + chr1_4:71558199-71558218 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG + chr1_4:71558235-71558254 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG + chr1_4:71558301-71558320 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG + chr1_4:71558436-71558455 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG + chr1_4:71558707-71558726 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG - chr1_4:71558711-71558730 Msa0182740:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG - chr1_4:71559070-71559089 Msa0182740:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG - chr1_4:71559636-71559655 Msa0182740:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG - chr1_4:71559726-71559745 Msa0182740:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG - chr1_4:71559892-71559911 Msa0182740:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG - chr1_4:71559893-71559912 Msa0182740:intron 20.0%
!! AAGATTATCTCAAATATAGA+TGG - chr1_4:71558152-71558171 Msa0182740:CDS 20.0%
!! TGAAACTATTATTATTACCT+TGG + chr1_4:71558199-71558218 None:intergenic 20.0%
!!! TATTTAAAATTAGGAAAGAG+TGG + chr1_4:71558235-71558254 None:intergenic 20.0%
!! TCAACTAATACAAAATAACA+AGG + chr1_4:71558301-71558320 None:intergenic 20.0%
!!! TATACAATTAGTTTTGTCTT+AGG + chr1_4:71558436-71558455 None:intergenic 20.0%
!! AACTTATCAAACAATTATCA+AGG + chr1_4:71558707-71558726 None:intergenic 20.0%
!! AATTGTTTGATAAGTTATCT+TGG - chr1_4:71558711-71558730 Msa0182740:intron 20.0%
!!! TTTTTCTTATTATTGGCTAT+AGG - chr1_4:71559070-71559089 Msa0182740:intron 20.0%
!!! AATTTTAATCCTTACTTTGA+TGG - chr1_4:71559636-71559655 Msa0182740:intron 20.0%
!! ACAAGAATCAAATGTAAAAA+CGG - chr1_4:71559726-71559745 Msa0182740:intron 20.0%
!!! TAATGCTTCATAAATTTTCA+AGG - chr1_4:71559892-71559911 Msa0182740:intron 20.0%
!!! AATGCTTCATAAATTTTCAA+GGG - chr1_4:71559893-71559912 Msa0182740:intron 20.0%
! AAGACAATATCAAATGACAT+TGG - chr1_4:71557925-71557944 Msa0182740:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG - chr1_4:71558026-71558045 Msa0182740:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG + chr1_4:71558148-71558167 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG - chr1_4:71558274-71558293 Msa0182740:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG + chr1_4:71558618-71558637 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG - chr1_4:71558670-71558689 Msa0182740:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG - chr1_4:71558890-71558909 Msa0182740:intron 25.0%
! GCTAAAAAACTTTAGTACAT+TGG + chr1_4:71558937-71558956 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG - chr1_4:71559029-71559048 Msa0182740:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG + chr1_4:71559106-71559125 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG - chr1_4:71559247-71559266 Msa0182740:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG + chr1_4:71559648-71559667 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG - chr1_4:71559689-71559708 Msa0182740:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG - chr1_4:71560003-71560022 Msa0182740:CDS 25.0%
! AAGACAATATCAAATGACAT+TGG - chr1_4:71557925-71557944 Msa0182740:CDS 25.0%
! AAGAATGTGATCTTTCTAAA+GGG - chr1_4:71558026-71558045 Msa0182740:CDS 25.0%
!! TATTTGAGATAATCTTGATC+TGG + chr1_4:71558148-71558167 None:intergenic 25.0%
!!! CTACGTTTTGATTTTGATTT+TGG - chr1_4:71558274-71558293 Msa0182740:intron 25.0%
!!! ATGTTTTGTTAGTCTTGTAA+AGG + chr1_4:71558618-71558637 None:intergenic 25.0%
! CAACTCCAATCTTAAATTAA+AGG - chr1_4:71558670-71558689 Msa0182740:intron 25.0%
!! TGATTTTCAATACCTATCAT+TGG - chr1_4:71558890-71558909 Msa0182740:intron 25.0%
! GCTAAAAAACTTTAGTACAT+TGG + chr1_4:71558937-71558956 None:intergenic 25.0%
! GAGAGAGTTATTAGAATATA+AGG - chr1_4:71559029-71559048 Msa0182740:intron 25.0%
!! AGTTTGTTCTTCTTATCATT+CGG + chr1_4:71559106-71559125 None:intergenic 25.0%
! AAATGAGATAATGAAAGACA+TGG - chr1_4:71559247-71559266 Msa0182740:CDS 25.0%
!!! GATTTTAATCCATCAAAGTA+AGG + chr1_4:71559648-71559667 None:intergenic 25.0%
!! ATAAGAACAAATTTTGCAAG+AGG - chr1_4:71559689-71559708 Msa0182740:intron 25.0%
! ACATGAAAAGTCATGTTTAT+TGG - chr1_4:71560003-71560022 Msa0182740:CDS 25.0%
CAAGAATGTGATCTTTCTAA+AGG - chr1_4:71558025-71558044 Msa0182740:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG - chr1_4:71558027-71558046 Msa0182740:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG - chr1_4:71558450-71558469 Msa0182740:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG - chr1_4:71558462-71558481 Msa0182740:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG - chr1_4:71558470-71558489 Msa0182740:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG - chr1_4:71558519-71558538 Msa0182740:intron 30.0%
! GAAAAAGATCATGTTTGTTG+GGG - chr1_4:71558520-71558539 Msa0182740:intron 30.0%
! GTAAAGGTGTAATTTGATTC+TGG + chr1_4:71558602-71558621 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG - chr1_4:71558637-71558656 Msa0182740:intron 30.0%
GTCGCATTATTATGTGTTAT+AGG - chr1_4:71558741-71558760 Msa0182740:CDS 30.0%
AGTATGAAGTTTCAATAGTG+TGG - chr1_4:71558764-71558783 Msa0182740:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG - chr1_4:71558765-71558784 Msa0182740:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG - chr1_4:71558893-71558912 Msa0182740:intron 30.0%
ACTTCTCAATAAGAGAATTG+AGG - chr1_4:71559167-71559186 Msa0182740:CDS 30.0%
AATAAGAGAATTGAGGTTTG+TGG - chr1_4:71559174-71559193 Msa0182740:CDS 30.0%
AACATTGAAGCTTACAAGAT+TGG - chr1_4:71559272-71559291 Msa0182740:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG - chr1_4:71559273-71559292 Msa0182740:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG + chr1_4:71559338-71559357 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG + chr1_4:71559339-71559358 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG - chr1_4:71559341-71559360 Msa0182740:intron 30.0%
TTACTTTACAAACACAACTG+CGG - chr1_4:71560033-71560052 Msa0182740:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG - chr1_4:71560152-71560171 Msa0182740:CDS 30.0%
CAAGAATGTGATCTTTCTAA+AGG - chr1_4:71558025-71558044 Msa0182740:CDS 30.0%
! AGAATGTGATCTTTCTAAAG+GGG - chr1_4:71558027-71558046 Msa0182740:CDS 30.0%
TGTATATTTGCAAGTGATGT+TGG - chr1_4:71558450-71558469 Msa0182740:intron 30.0%
! AGTGATGTTGGTTAATTAAC+AGG - chr1_4:71558462-71558481 Msa0182740:intron 30.0%
TGGTTAATTAACAGGTTTGA+TGG - chr1_4:71558470-71558489 Msa0182740:intron 30.0%
GGAAAAAGATCATGTTTGTT+GGG - chr1_4:71558519-71558538 Msa0182740:intron 30.0%
! GAAAAAGATCATGTTTGTTG+GGG - chr1_4:71558520-71558539 Msa0182740:intron 30.0%
! GTAAAGGTGTAATTTGATTC+TGG + chr1_4:71558602-71558621 None:intergenic 30.0%
TCTTTCTATGTTCAGATTTC+TGG - chr1_4:71558637-71558656 Msa0182740:intron 30.0%
GTCGCATTATTATGTGTTAT+AGG - chr1_4:71558741-71558760 Msa0182740:CDS 30.0%
AGTATGAAGTTTCAATAGTG+TGG - chr1_4:71558764-71558783 Msa0182740:CDS 30.0%
GTATGAAGTTTCAATAGTGT+GGG - chr1_4:71558765-71558784 Msa0182740:CDS 30.0%
! TTTTCAATACCTATCATTGG+TGG - chr1_4:71558893-71558912 Msa0182740:intron 30.0%
ACTTCTCAATAAGAGAATTG+AGG - chr1_4:71559167-71559186 Msa0182740:CDS 30.0%
AATAAGAGAATTGAGGTTTG+TGG - chr1_4:71559174-71559193 Msa0182740:CDS 30.0%
AACATTGAAGCTTACAAGAT+TGG - chr1_4:71559272-71559291 Msa0182740:CDS 30.0%
ACATTGAAGCTTACAAGATT+GGG - chr1_4:71559273-71559292 Msa0182740:CDS 30.0%
AAGATAACAGTAGTCTTTGA+GGG + chr1_4:71559338-71559357 None:intergenic 30.0%
AAAGATAACAGTAGTCTTTG+AGG + chr1_4:71559339-71559358 None:intergenic 30.0%
AAGACTACTGTTATCTTTCA+AGG - chr1_4:71559341-71559360 Msa0182740:intron 30.0%
TTACTTTACAAACACAACTG+CGG - chr1_4:71560033-71560052 Msa0182740:CDS 30.0%
!!! ATGTTGTATGCTGTTTTACT+AGG - chr1_4:71560152-71560171 Msa0182740:CDS 30.0%
ACACACATTCGTTCTTCTAT+GGG - chr1_4:71557970-71557989 Msa0182740:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG - chr1_4:71558033-71558052 Msa0182740:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG + chr1_4:71558106-71558125 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG - chr1_4:71558118-71558137 Msa0182740:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG - chr1_4:71558484-71558503 Msa0182740:intron 35.0%
! CAAACATGATCTTTTTCCCT+CGG + chr1_4:71558517-71558536 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG - chr1_4:71558518-71558537 Msa0182740:intron 35.0%
ACTCTATAAGCGACAATATG+TGG - chr1_4:71558543-71558562 Msa0182740:intron 35.0%
GAATTGAGGTTTGTGGATAT+TGG - chr1_4:71559181-71559200 Msa0182740:CDS 35.0%
ATCAATCCAATTAGACCAAG+TGG + chr1_4:71559303-71559322 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG - chr1_4:71559557-71559576 Msa0182740:CDS 35.0%
AACTAACCAAAAGCAAACAG+TGG + chr1_4:71559566-71559585 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG - chr1_4:71559591-71559610 Msa0182740:CDS 35.0%
! CAATATGACCAACTTTTGCA+TGG + chr1_4:71559602-71559621 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG + chr1_4:71560137-71560156 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG + chr1_4:71560138-71560157 None:intergenic 35.0%
ACACACATTCGTTCTTCTAT+GGG - chr1_4:71557970-71557989 Msa0182740:CDS 35.0%
! TGATCTTTCTAAAGGGGAAT+GGG - chr1_4:71558033-71558052 Msa0182740:CDS 35.0%
TCAAATCCCTGCACTATAAA+AGG + chr1_4:71558106-71558125 None:intergenic 35.0%
GGATTTGATTGTCTCAGAAA+TGG - chr1_4:71558118-71558137 Msa0182740:CDS 35.0%
!! GTTTGATGGTGTGAAATTCT+TGG - chr1_4:71558484-71558503 Msa0182740:intron 35.0%
! CAAACATGATCTTTTTCCCT+CGG + chr1_4:71558517-71558536 None:intergenic 35.0%
GGGAAAAAGATCATGTTTGT+TGG - chr1_4:71558518-71558537 Msa0182740:intron 35.0%
ACTCTATAAGCGACAATATG+TGG - chr1_4:71558543-71558562 Msa0182740:intron 35.0%
GAATTGAGGTTTGTGGATAT+TGG - chr1_4:71559181-71559200 Msa0182740:CDS 35.0%
ATCAATCCAATTAGACCAAG+TGG + chr1_4:71559303-71559322 None:intergenic 35.0%
! AAGAAACCACTGTTTGCTTT+TGG - chr1_4:71559557-71559576 Msa0182740:CDS 35.0%
AACTAACCAAAAGCAAACAG+TGG + chr1_4:71559566-71559585 None:intergenic 35.0%
!! GTTTTAGTCCATGCAAAAGT+TGG - chr1_4:71559591-71559610 Msa0182740:CDS 35.0%
! CAATATGACCAACTTTTGCA+TGG + chr1_4:71559602-71559621 None:intergenic 35.0%
AACATTTCATTCCAAGTGTC+GGG + chr1_4:71560137-71560156 None:intergenic 35.0%
CAACATTTCATTCCAAGTGT+CGG + chr1_4:71560138-71560157 None:intergenic 35.0%
CATAGAAGAACGAATGTGTG+TGG + chr1_4:71557971-71557990 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG - chr1_4:71557969-71557988 Msa0182740:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG - chr1_4:71558032-71558051 Msa0182740:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG + chr1_4:71558070-71558089 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG + chr1_4:71558092-71558111 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG - chr1_4:71558097-71558116 Msa0182740:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG + chr1_4:71558181-71558200 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG - chr1_4:71558179-71558198 Msa0182740:intron 40.0%
AATTAGGAAAGAGTGGAGAG+TGG + chr1_4:71558228-71558247 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG - chr1_4:71558497-71558516 Msa0182740:intron 40.0%
AATTCTTGGAGACATACCGA+GGG - chr1_4:71558498-71558517 Msa0182740:intron 40.0%
TCAATAGTGTGGGTGAAAGA+TGG - chr1_4:71558775-71558794 Msa0182740:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG - chr1_4:71558776-71558795 Msa0182740:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG - chr1_4:71558810-71558829 Msa0182740:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG - chr1_4:71558811-71558830 Msa0182740:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG - chr1_4:71558845-71558864 Msa0182740:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG + chr1_4:71558905-71558924 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG - chr1_4:71558904-71558923 Msa0182740:intron 40.0%
! ATCCACAGACACTTTCAAGT+GGG - chr1_4:71559224-71559243 Msa0182740:CDS 40.0%
ACAAGATTGGGTTAACCACT+TGG - chr1_4:71559285-71559304 Msa0182740:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG - chr1_4:71559294-71559313 Msa0182740:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG - chr1_4:71559908-71559927 Msa0182740:CDS 40.0%
TTCTGAACAATGTCTACACC+AGG + chr1_4:71559972-71559991 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG + chr1_4:71560070-71560089 None:intergenic 40.0%
CATAGAAGAACGAATGTGTG+TGG + chr1_4:71557971-71557990 None:intergenic 40.0%
CACACACATTCGTTCTTCTA+TGG - chr1_4:71557969-71557988 Msa0182740:CDS 40.0%
! GTGATCTTTCTAAAGGGGAA+TGG - chr1_4:71558032-71558051 Msa0182740:CDS 40.0%
GCATCATAAAGAGGGTAGTA+TGG + chr1_4:71558070-71558089 None:intergenic 40.0%
TATAAAAGGACAGTCCCTTG+AGG + chr1_4:71558092-71558111 None:intergenic 40.0%
! GACTGTCCTTTTATAGTGCA+GGG - chr1_4:71558097-71558116 Msa0182740:CDS 40.0%
CTTGGAAGATCACATGCAAA+AGG + chr1_4:71558181-71558200 None:intergenic 40.0%
! CTTTTGCATGTGATCTTCCA+AGG - chr1_4:71558179-71558198 Msa0182740:intron 40.0%
AATTAGGAAAGAGTGGAGAG+TGG + chr1_4:71558228-71558247 None:intergenic 40.0%
AAATTCTTGGAGACATACCG+AGG - chr1_4:71558497-71558516 Msa0182740:intron 40.0%
AATTCTTGGAGACATACCGA+GGG - chr1_4:71558498-71558517 Msa0182740:intron 40.0%
TCAATAGTGTGGGTGAAAGA+TGG - chr1_4:71558775-71558794 Msa0182740:CDS 40.0%
CAATAGTGTGGGTGAAAGAT+GGG - chr1_4:71558776-71558795 Msa0182740:CDS 40.0%
TACGGTTCGTGATAGAGAAA+AGG - chr1_4:71558810-71558829 Msa0182740:CDS 40.0%
ACGGTTCGTGATAGAGAAAA+GGG - chr1_4:71558811-71558830 Msa0182740:CDS 40.0%
AACTTGACTCCGTTTCATCT+CGG - chr1_4:71558845-71558864 Msa0182740:CDS 40.0%
TGTGTGAAACCACCAATGAT+AGG + chr1_4:71558905-71558924 None:intergenic 40.0%
! TATCATTGGTGGTTTCACAC+AGG - chr1_4:71558904-71558923 Msa0182740:intron 40.0%
! ATCCACAGACACTTTCAAGT+GGG - chr1_4:71559224-71559243 Msa0182740:CDS 40.0%
ACAAGATTGGGTTAACCACT+TGG - chr1_4:71559285-71559304 Msa0182740:CDS 40.0%
GGTTAACCACTTGGTCTAAT+TGG - chr1_4:71559294-71559313 Msa0182740:CDS 40.0%
TTCAAGGGAAAAACACTGTC+TGG - chr1_4:71559908-71559927 Msa0182740:CDS 40.0%
TTCTGAACAATGTCTACACC+AGG + chr1_4:71559972-71559991 None:intergenic 40.0%
CTCGACCAGTGAATATAGAA+GGG + chr1_4:71560070-71560089 None:intergenic 40.0%
ATTCGTTCTTCTATGGGCAG+TGG - chr1_4:71557976-71557995 Msa0182740:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG + chr1_4:71558004-71558023 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG - chr1_4:71558074-71558093 Msa0182740:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG + chr1_4:71558078-71558097 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG - chr1_4:71558075-71558094 Msa0182740:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG + chr1_4:71558079-71558098 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG - chr1_4:71558096-71558115 Msa0182740:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG - chr1_4:71558792-71558811 Msa0182740:CDS 45.0%
TATCACGAACCGTATCCACT+AGG + chr1_4:71558804-71558823 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG + chr1_4:71558857-71558876 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG - chr1_4:71558859-71558878 Msa0182740:intron 45.0%
CATCCACAGACACTTTCAAG+TGG - chr1_4:71559223-71559242 Msa0182740:CDS 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG + chr1_4:71559229-71559248 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG - chr1_4:71559363-71559382 Msa0182740:intron 45.0%
! TCTGGAACAAACTAAGCCAG+AGG - chr1_4:71559926-71559945 Msa0182740:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG - chr1_4:71559930-71559949 Msa0182740:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG + chr1_4:71559963-71559982 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG - chr1_4:71560041-71560060 Msa0182740:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG - chr1_4:71560062-71560081 Msa0182740:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG + chr1_4:71560071-71560090 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG - chr1_4:71560068-71560087 Msa0182740:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG - chr1_4:71560082-71560101 Msa0182740:CDS 45.0%
ATTCGTTCTTCTATGGGCAG+TGG - chr1_4:71557976-71557995 Msa0182740:CDS 45.0%
GCATGCACATAGTACAGTGT+AGG + chr1_4:71558004-71558023 None:intergenic 45.0%
ACCCTCTTTATGATGCCTCA+AGG - chr1_4:71558074-71558093 Msa0182740:CDS 45.0%
! CCCTTGAGGCATCATAAAGA+GGG + chr1_4:71558078-71558097 None:intergenic 45.0%
CCCTCTTTATGATGCCTCAA+GGG - chr1_4:71558075-71558094 Msa0182740:CDS 45.0%
! TCCCTTGAGGCATCATAAAG+AGG + chr1_4:71558079-71558098 None:intergenic 45.0%
! GGACTGTCCTTTTATAGTGC+AGG - chr1_4:71558096-71558115 Msa0182740:CDS 45.0%
! AGATGGGTACCTAGTGGATA+CGG - chr1_4:71558792-71558811 Msa0182740:CDS 45.0%
TATCACGAACCGTATCCACT+AGG + chr1_4:71558804-71558823 None:intergenic 45.0%
CCACTTGTACCGAGATGAAA+CGG + chr1_4:71558857-71558876 None:intergenic 45.0%
TCATCTCGGTACAAGTGGAA+TGG - chr1_4:71558859-71558878 Msa0182740:intron 45.0%
CATCCACAGACACTTTCAAG+TGG - chr1_4:71559223-71559242 Msa0182740:CDS 45.0%
!! TTCCCACTTGAAAGTGTCTG+TGG + chr1_4:71559229-71559248 None:intergenic 45.0%
GAATTGCTGCTGCACATTCA+GGG - chr1_4:71559363-71559382 Msa0182740:intron 45.0%
! TCTGGAACAAACTAAGCCAG+AGG - chr1_4:71559926-71559945 Msa0182740:CDS 45.0%
GAACAAACTAAGCCAGAGGA+AGG - chr1_4:71559930-71559949 Msa0182740:CDS 45.0%
ATGTCTACACCAGGATATGC+TGG + chr1_4:71559963-71559982 None:intergenic 45.0%
CAAACACAACTGCGGATAGA+TGG - chr1_4:71560041-71560060 Msa0182740:CDS 45.0%
GGTCACCCTTCTATATTCAC+TGG - chr1_4:71560062-71560081 Msa0182740:CDS 45.0%
CCTCGACCAGTGAATATAGA+AGG + chr1_4:71560071-71560090 None:intergenic 45.0%
CCTTCTATATTCACTGGTCG+AGG - chr1_4:71560068-71560087 Msa0182740:CDS 45.0%
TGGTCGAGGAACTTCTTATG+AGG - chr1_4:71560082-71560101 Msa0182740:CDS 45.0%
!!! TAAAAATCATATTTAAAATT+AGG + chr1_4:71558244-71558263 None:intergenic 5.0%
!! TAAAAAAATGATATATTTAT+GGG + chr1_4:71559450-71559469 None:intergenic 5.0%
!! ATAAAAAAATGATATATTTA+TGG + chr1_4:71559451-71559470 None:intergenic 5.0%
!!! TAAAAATCATATTTAAAATT+AGG + chr1_4:71558244-71558263 None:intergenic 5.0%
!! TAAAAAAATGATATATTTAT+GGG + chr1_4:71559450-71559469 None:intergenic 5.0%
!! ATAAAAAAATGATATATTTA+TGG + chr1_4:71559451-71559470 None:intergenic 5.0%
GGTGAAAGATGGGTACCTAG+TGG - chr1_4:71558786-71558805 Msa0182740:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG - chr1_4:71558854-71558873 Msa0182740:intron 50.0%
GGAATTGCTGCTGCACATTC+AGG - chr1_4:71559362-71559381 Msa0182740:intron 50.0%
GGATCAAAGCCAGCATATCC+TGG - chr1_4:71559951-71559970 Msa0182740:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG - chr1_4:71560096-71560115 Msa0182740:CDS 50.0%
GGTGAAAGATGGGTACCTAG+TGG - chr1_4:71558786-71558805 Msa0182740:CDS 50.0%
CCGTTTCATCTCGGTACAAG+TGG - chr1_4:71558854-71558873 Msa0182740:intron 50.0%
GGAATTGCTGCTGCACATTC+AGG - chr1_4:71559362-71559381 Msa0182740:intron 50.0%
GGATCAAAGCCAGCATATCC+TGG - chr1_4:71559951-71559970 Msa0182740:CDS 50.0%
CTTATGAGGACTGCAGTCAC+TGG - chr1_4:71560096-71560115 Msa0182740:CDS 50.0%
!! GCTGGCTTTGATCCTTCCTC+TGG + chr1_4:71559945-71559964 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG - chr1_4:71560107-71560126 Msa0182740:CDS 55.0%
!! GCTGGCTTTGATCCTTCCTC+TGG + chr1_4:71559945-71559964 None:intergenic 55.0%
TGCAGTCACTGGTGTCTAGC+TGG - chr1_4:71560107-71560126 Msa0182740:CDS 55.0%
TAGCTGGTGCTCCCGACACT+TGG - chr1_4:71560123-71560142 Msa0182740:CDS 60.0%
TAGCTGGTGCTCCCGACACT+TGG - chr1_4:71560123-71560142 Msa0182740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71557902 71560199 71557902 ID=Msa0182740;Name=Msa0182740
chr1_4 mRNA 71557902 71560199 71557902 ID=Msa0182740-mRNA-1;Parent=Msa0182740;Name=Msa0182740-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|362
chr1_4 exon 71559901 71560199 71559901 ID=Msa0182740-mRNA-1:exon:23966;Parent=Msa0182740-mRNA-1
chr1_4 exon 71559443 71559617 71559443 ID=Msa0182740-mRNA-1:exon:23965;Parent=Msa0182740-mRNA-1
chr1_4 exon 71559163 71559338 71559163 ID=Msa0182740-mRNA-1:exon:23964;Parent=Msa0182740-mRNA-1
chr1_4 exon 71558717 71558869 71558717 ID=Msa0182740-mRNA-1:exon:23963;Parent=Msa0182740-mRNA-1
chr1_4 exon 71557902 71558187 71557902 ID=Msa0182740-mRNA-1:exon:23962;Parent=Msa0182740-mRNA-1
chr1_4 CDS 71559901 71560199 71559901 ID=Msa0182740-mRNA-1:cds;Parent=Msa0182740-mRNA-1
chr1_4 CDS 71559443 71559617 71559443 ID=Msa0182740-mRNA-1:cds;Parent=Msa0182740-mRNA-1
chr1_4 CDS 71559163 71559338 71559163 ID=Msa0182740-mRNA-1:cds;Parent=Msa0182740-mRNA-1
chr1_4 CDS 71558717 71558869 71558717 ID=Msa0182740-mRNA-1:cds;Parent=Msa0182740-mRNA-1
chr1_4 CDS 71557902 71558187 71557902 ID=Msa0182740-mRNA-1:cds;Parent=Msa0182740-mRNA-1
Gene Sequence

>Msa0182740

ATGGTTTGGTTTGGAAAGATTTTAAGACAATATCAAATGACATTGGATTTCTTGTTACATCTTCTGCCACACACATTCGTTCTTCTATGGGCAGTGGCACCTACACTGTACTATGTGCATGCTCAAGAATGTGATCTTTCTAAAGGGGAATGGGTTGTTGATGATCCATACTACCCTCTTTATGATGCCTCAAGGGACTGTCCTTTTATAGTGCAGGGATTTGATTGTCTCAGAAATGGTAGACCAGATCAAGATTATCTCAAATATAGATGGAAACCTTTTGCATGTGATCTTCCAAGGTTTGATGGTGTGAAATTCTTGGAGACATACCGAGGGAAAAAGATCATGTTTGTTGGGGACTCTATAAGCGACAATATGTGGCAGTCACTTGCTTGTTTGCTTCACATTGCAGTGCCAGAATCAAATTACACCTTTACAAGACTAACAAAACATCTTTCTATGTTCAGATTTCTGGAGTATGAAGTTTCAATAGTGTGGGTGAAAGATGGGTACCTAGTGGATACGGTTCGTGATAGAGAAAAGGGAAGAATTATAAAACTTGACTCCGTTTCATCTCGGTACAAGTGGAATGGAGATGTTTTGATTTTCAATACCTATCATTGGTGGTTTCACACAGGACAGACTCCAATACACTTTCAAGTGGGAAATGAGATAATGAAAGACATGGATAACATTGAAGCTTACAAGATTGGGTTAACCACTTGGTCTAATTGGATTGATTCTAACATTGATCCCTCAAAGACTACTGTTATCTTTCAAGGAATTGCTGCTGCACATTCAGGGGAAAAACACTGTCTGGAACAAACTAAGCCAGAGGAAGGATCAAAGCCAGCATATCCTGGTGTAGACATTGTTCAGAATGTTTTGAGTAACATGAAAAGTCATGTTTATTGGCTTGACATTACTTTACAAACACAACTGCGGATAGATGGTCACCCTTCTATATTCACTGGTCGAGGAACTTCTTATGAGGACTGCAGTCACTGGTGTCTAGCTGGTGCTCCCGACACTTGGAATGAAATGTTGTATGCTGTTTTACTAGGAAATCAATATTATCGTCATTTGTAA
Protein sequence

>Msa0182740

MVWFGKILRQYQMTLDFLLHLLPHTFVLLWAVAPTLYYVHAQECDLSKGEWVVDDPYYPLYDASRDCPFIVQGFDCLRNGRPDQDYLKYRWKPFACDLPRFDGVKFLETYRGKKIMFVGDSISDNMWQSLACLLHIAVPESNYTFTRLTKHLSMFRFLEYEVSIVWVKDGYLVDTVRDREKGRIIKLDSVSSRYKWNGDVLIFNTYHWWFHTGQTPIHFQVGNEIMKDMDNIEAYKIGLTTWSNWIDSNIDPSKTTVIFQGIAAAHSGEKHCLEQTKPEEGSKPAYPGVDIVQNVLSNMKSHVYWLDITLQTQLRIDGHPSIFTGRGTSYEDCSHWCLAGAPDTWNEMLYAVLLGNQYYRHL*