AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118800 MtrunA17_Chr7g0253311 100.000 411 0 0 1 411 1 411 0.0 848
Msa1118800 MtrunA17_Chr6g0461461 90.754 411 38 0 1 411 1 411 0.0 788
Msa1118800 MtrunA17_Chr5g0399821 80.292 411 81 0 1 411 1 411 0.0 702
Msa1118800 MtrunA17_Chr4g0055521 80.535 411 80 0 1 411 1 411 0.0 699
Msa1118800 MtrunA17_Chr8g0341541 27.078 373 259 5 16 375 224 596 7.26e-35 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118800 AT5G18170.1 89.781 411 42 0 1 411 1 411 0.0 778
Msa1118800 AT3G03910.1 87.042 409 53 0 1 409 1 409 0.0 759
Msa1118800 AT5G07440.2 81.022 411 78 0 1 411 1 411 0.0 708
Msa1118800 AT5G07440.1 81.022 411 78 0 1 411 1 411 0.0 708
Msa1118800 AT3G03910.2 88.286 350 41 0 1 350 1 350 0.0 650
Msa1118800 AT5G07440.3 80.743 296 57 0 1 296 1 296 1.89e-180 504
Msa1118800 AT1G51720.1 28.333 360 248 4 26 375 237 596 2.68e-34 135
Msa1118800 AT1G51720.3 28.333 360 248 4 26 375 237 596 2.68e-34 135
Msa1118800 AT1G51720.2 28.981 314 213 4 26 329 237 550 6.64e-33 130
Msa1118800 AT1G51720.4 30.806 211 146 0 26 236 237 447 1.97e-24 105

Find 135 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACCTTTGCTGTTCTTTA+TGG 0.094238 7_3:+67574871 None:intergenic
TAAGTTGGCTTCTAGGCTTT+TGG 0.210460 7_3:-67576314 Msa1118800:CDS
GCATTTCCCTCTACATTTCT+TGG 0.220029 7_3:-67579096 Msa1118800:intron
AAAGTTTACTCATTCCATTT+AGG 0.224265 7_3:-67576270 Msa1118800:CDS
TTTACCTTGATTTCCCTAAA+TGG 0.227128 7_3:+67576256 None:intergenic
CAGAAAATTCATGATCTAAT+TGG 0.230295 7_3:-67575568 Msa1118800:CDS
TAGGATCTTGGTGGATCTTT+AGG 0.251754 7_3:-67575161 Msa1118800:CDS
TGCAACGTGCCGTCATCTTT+TGG 0.259995 7_3:+67576108 None:intergenic
CCAGACATTTATGCAAATTC+AGG 0.267573 7_3:-67574380 Msa1118800:CDS
TGAAATCAGTGATAAAATTC+AGG 0.276563 7_3:+67573734 None:intergenic
TGTGTATTTGTTCAGGGTTT+TGG 0.276809 7_3:-67574971 Msa1118800:intron
AGGGTTCCATGTACTATTCT+TGG 0.287545 7_3:-67573707 Msa1118800:three_prime_UTR
AAGTTTACTCATTCCATTTA+GGG 0.289477 7_3:-67576269 Msa1118800:CDS
GGCACGTTGCAATCTTATAT+TGG 0.290304 7_3:-67576096 Msa1118800:CDS
GGATGTTCCTGCACCTGATA+TGG 0.292182 7_3:-67575536 Msa1118800:CDS
GAGGCTTTGCTTAATGAGTA+TGG 0.292195 7_3:-67575098 Msa1118800:CDS
CGAATGGGAGCTTTCAGTTT+GGG 0.292928 7_3:-67573918 Msa1118800:CDS
TGGACAACGGTTCGTCATTC+AGG 0.296438 7_3:-67575063 Msa1118800:intron
AAAGAGCACAAGGGAGTAAA+AGG 0.301277 7_3:-67574821 Msa1118800:CDS
AGGCGAGTAGCCGTGAAATT+TGG 0.313243 7_3:+67575310 None:intergenic
GGAAAATGCAAATGAAATTA+AGG 0.319621 7_3:-67574576 Msa1118800:CDS
TGTGGTCCTGTTCCCATATC+AGG 0.339231 7_3:+67575523 None:intergenic
GTATCTGATCCCTCCTTTCA+TGG 0.345021 7_3:+67576041 None:intergenic
GAGTATGGGAAGAGTATATC+TGG 0.360763 7_3:-67575083 Msa1118800:CDS
TAGCTACTTTGAGTGGGTTC+AGG 0.363957 7_3:-67574345 Msa1118800:intron
CCTGAATTTGCATAAATGTC+TGG 0.369176 7_3:+67574380 None:intergenic
CTCAAGCTTCCCAACCTCTA+AGG 0.378052 7_3:+67573868 None:intergenic
CCTTCAAGTCATTATTGTAA+TGG 0.395413 7_3:-67579454 Msa1118800:five_prime_UTR
CCTTTGTCAAACTAGGATCT+TGG 0.397168 7_3:-67575173 Msa1118800:intron
TCACATTGCTTTGTTAAGCT+TGG 0.398720 7_3:-67579123 Msa1118800:five_prime_UTR
GATGAATATTCCAAATTTCA+CGG 0.417046 7_3:-67575320 Msa1118800:CDS
ATGACACCTCCAAGAGCTGC+TGG 0.419333 7_3:+67574734 None:intergenic
TTGTGTTAGGTTCTTCTAGT+TGG 0.422861 7_3:-67576380 Msa1118800:intron
GCTAAAGCATTCACTTCATC+TGG 0.423121 7_3:+67575715 None:intergenic
TCGAATGGGAGCTTTCAGTT+TGG 0.423878 7_3:-67573919 Msa1118800:CDS
GTTCTAATCCCAGCAGCTCT+TGG 0.427670 7_3:-67574743 Msa1118800:CDS
TATCTGATCCCTCCTTTCAT+GGG 0.433194 7_3:+67576042 None:intergenic
TAACCAACCTCATCAGCATC+AGG 0.434553 7_3:+67574515 None:intergenic
GTCATTATTGTAATGGTTGA+AGG 0.435906 7_3:-67579447 Msa1118800:intron
TTGGTATGCTTGAGTAGGCT+AGG 0.438375 7_3:+67574842 None:intergenic
CCTCCTTTGGCACCACCATA+TGG 0.438942 7_3:+67575655 None:intergenic
ATTCTAACTCATTAAACAAA+TGG 0.444274 7_3:+67573675 None:intergenic
GGCTACTGTCCTTAGAGGTT+GGG 0.445489 7_3:-67573877 Msa1118800:CDS
GTTACACCCTATCCCTCCTT+TGG 0.445729 7_3:+67575642 None:intergenic
TACTCGCCTGCAGTGGTGAC+TGG 0.447181 7_3:-67575296 Msa1118800:CDS
GCAAGGGCTACTGTCCTTAG+AGG 0.449354 7_3:-67573882 Msa1118800:CDS
CATTCCATTTAGGGAAATCA+AGG 0.454849 7_3:-67576260 Msa1118800:intron
GGTGGTGCCAAAGGAGGGAT+AGG 0.455169 7_3:-67575649 Msa1118800:CDS
TTAGGTAGAGACGCAGCTAC+AGG 0.468215 7_3:-67575143 Msa1118800:CDS
GAGATCTTGTCGTTGCTGCT+TGG 0.470117 7_3:-67573848 Msa1118800:three_prime_UTR
CCTGCACCTGATATGGGAAC+AGG 0.473655 7_3:-67575529 Msa1118800:CDS
CTCTTGGAGGTGTCATCAAT+AGG 0.474115 7_3:-67574727 Msa1118800:intron
GCCTTAAAATACTTAATACT+AGG 0.476672 7_3:-67573612 Msa1118800:three_prime_UTR
GGGCTACTGTCCTTAGAGGT+TGG 0.478265 7_3:-67573878 Msa1118800:CDS
GTTGCTGTGAGTGACATAAC+TGG 0.481477 7_3:-67574896 Msa1118800:CDS
AGAACATCCAAGGGTTTATG+TGG 0.484407 7_3:-67574034 Msa1118800:CDS
CATCAGCATCAGGGTCAGTT+GGG 0.486837 7_3:+67574525 None:intergenic
CTAATCCCAGCAGCTCTTGG+AGG 0.487824 7_3:-67574740 Msa1118800:CDS
GAAATCAGTGATAAAATTCA+GGG 0.491756 7_3:+67573735 None:intergenic
TGGTATGCTTGAGTAGGCTA+GGG 0.498740 7_3:+67574843 None:intergenic
CCATTACAATAATGACTTGA+AGG 0.499349 7_3:+67579454 None:intergenic
ATGCACTAGCAGCTACAAAC+AGG 0.499625 7_3:-67576342 Msa1118800:CDS
AGGTTCTTCTAGTTGGCAAA+GGG 0.501517 7_3:-67576373 Msa1118800:five_prime_UTR
AGGAGTTATGTTTGCAGCCG+AGG 0.501859 7_3:-67575117 Msa1118800:CDS
TCATCAGCATCAGGGTCAGT+TGG 0.504130 7_3:+67574524 None:intergenic
TTACAGTTAGCTACTTTGAG+TGG 0.504316 7_3:-67574352 Msa1118800:CDS
AAAATTAGCAAAGGAAAATG+TGG 0.504492 7_3:+67579516 None:intergenic
GCTGTAGCAAATATACCATA+TGG 0.512729 7_3:-67575670 Msa1118800:CDS
TCAGATATACTTAATTCTGA+AGG 0.513027 7_3:+67575619 None:intergenic
TACAGTTAGCTACTTTGAGT+GGG 0.513952 7_3:-67574351 Msa1118800:CDS
CTGAATTTGCATAAATGTCT+GGG 0.516752 7_3:+67574381 None:intergenic
GCTCTTTGGTATGCTTGAGT+AGG 0.517887 7_3:+67574837 None:intergenic
CCTTAAAATACTTAATACTA+GGG 0.519823 7_3:-67573611 Msa1118800:three_prime_UTR
TTGTCAAACTAGGATCTTGG+TGG 0.524001 7_3:-67575170 Msa1118800:intron
TTTATCACTGATTTCAGAAG+AGG 0.526388 7_3:-67573727 Msa1118800:three_prime_UTR
AGAGACGCAGCTACAGGAAG+AGG 0.528132 7_3:-67575137 Msa1118800:CDS
AATACTTAATACTAGGGACT+TGG 0.528477 7_3:-67573605 Msa1118800:three_prime_UTR
CCTCATCCCACATAAACCCT+TGG 0.528763 7_3:+67574027 None:intergenic
GATGTTCCTGCACCTGATAT+GGG 0.534015 7_3:-67575535 Msa1118800:CDS
CATGAATGTGATCTTCGAAT+GGG 0.534362 7_3:-67573933 Msa1118800:CDS
CCTGTTCCCATATCAGGTGC+AGG 0.535228 7_3:+67575529 None:intergenic
TGGGAGTTAACCGTGTGGCA+AGG 0.538568 7_3:-67573899 Msa1118800:CDS
CTTTAGCGCAACTAATGACA+TGG 0.539793 7_3:-67575699 Msa1118800:CDS
AGGCTTTGCTTAATGAGTAT+GGG 0.540014 7_3:-67575097 Msa1118800:CDS
CATTACAATAATGACTTGAA+GGG 0.541923 7_3:+67579455 None:intergenic
TCATGAATGTGATCTTCGAA+TGG 0.546441 7_3:-67573934 Msa1118800:CDS
GGGAGTTAACCGTGTGGCAA+GGG 0.549431 7_3:-67573898 Msa1118800:CDS
TAGGTTCTTCTAGTTGGCAA+AGG 0.551685 7_3:-67576374 Msa1118800:five_prime_UTR
GCACAATTAATTGATGAGAA+AGG 0.552436 7_3:-67574929 Msa1118800:CDS
CAGATATACTTAATTCTGAA+GGG 0.559546 7_3:+67575620 None:intergenic
GACTTGGATCCTCTGCAGCT+CGG 0.562193 7_3:-67573589 None:intergenic
CCAAGGGTTTATGTGGGATG+AGG 0.562647 7_3:-67574027 Msa1118800:CDS
TGATATACACAGAACATCCA+AGG 0.564539 7_3:-67574044 Msa1118800:intron
AATGCTAGAGGCCCCATGAA+AGG 0.566074 7_3:-67576054 Msa1118800:CDS
CCATATGGTGGTGCCAAAGG+AGG 0.569654 7_3:-67575655 Msa1118800:CDS
AAACATACCAAGAAATGTAG+AGG 0.574650 7_3:+67579089 None:intergenic
GTAGAGCATAAAATTAGCAA+AGG 0.574986 7_3:+67579507 None:intergenic
TTATCACTGATTTCAGAAGA+GGG 0.576267 7_3:-67573726 Msa1118800:three_prime_UTR
AACTGACCCTGATGCTGATG+AGG 0.577308 7_3:-67574522 Msa1118800:intron
TTCATCTAGTATCCATGCCA+TGG 0.578541 7_3:+67575337 None:intergenic
AAGGGAGTAAAAGGATTCCA+TGG 0.578709 7_3:-67574812 Msa1118800:CDS
TGAGCCAGACCGAGCTGCAG+AGG 0.582704 7_3:+67573580 None:intergenic
ATACCATATGGTGGTGCCAA+AGG 0.586993 7_3:-67575658 Msa1118800:CDS
CAAGCATACCAAAGAGCACA+AGG 0.588685 7_3:-67574831 Msa1118800:CDS
CATATGGTGGTGCCAAAGGA+GGG 0.588939 7_3:-67575654 Msa1118800:CDS
ATCTGATCCCTCCTTTCATG+GGG 0.594388 7_3:+67576043 None:intergenic
GACATTTATGCAAATTCAGG+AGG 0.596043 7_3:-67574377 Msa1118800:CDS
ATACTCATTAAGCAAAGCCT+CGG 0.599266 7_3:+67575100 None:intergenic
GCTAGAGGCCCCATGAAAGG+AGG 0.601353 7_3:-67576051 Msa1118800:CDS
TGACACCTCCAAGAGCTGCT+GGG 0.604905 7_3:+67574735 None:intergenic
AAATTAGCAAAGGAAAATGT+GGG 0.605601 7_3:+67579517 None:intergenic
GTTAATCCAAGAATAGTACA+TGG 0.612249 7_3:+67573701 None:intergenic
GTGGTGCCAAAGGAGGGATA+GGG 0.615069 7_3:-67575648 Msa1118800:CDS
TGATATGGGAACAGGACCAC+AGG 0.619474 7_3:-67575521 Msa1118800:intron
GTTCAACATGATAATGCTAG+AGG 0.620110 7_3:-67576066 Msa1118800:CDS
TGATCTAATTGGAACTCACA+TGG 0.620887 7_3:-67575557 Msa1118800:CDS
CTAGAGGCCCCATGAAAGGA+GGG 0.628040 7_3:-67576050 Msa1118800:CDS
AACATACCAAGAAATGTAGA+GGG 0.634875 7_3:+67579090 None:intergenic
AACCAACCTCATCAGCATCA+GGG 0.638651 7_3:+67574516 None:intergenic
TATGAATGCAGACCATGGCA+TGG 0.640845 7_3:-67575349 Msa1118800:intron
AGCAATGTGAAACAAGTGAG+TGG 0.648928 7_3:+67579136 None:intergenic
GAATATAAATAACCTCAGGA+TGG 0.651268 7_3:+67576019 None:intergenic
GGACAGTAGCCCTTGCCACA+CGG 0.653787 7_3:+67573889 None:intergenic
TGTACCATTCCAAAAGATGA+CGG 0.655126 7_3:-67576117 Msa1118800:CDS
GAACATCCAAGGGTTTATGT+GGG 0.659688 7_3:-67574033 Msa1118800:CDS
GATATACACAGAACATCCAA+GGG 0.663024 7_3:-67574043 Msa1118800:intron
GGAGCCATAAAGAACAGCAA+AGG 0.665891 7_3:-67574875 Msa1118800:CDS
AATCAAATGAATCACCACCA+TGG 0.671603 7_3:+67574795 None:intergenic
CAATTAATTGATGAGAAAGG+CGG 0.673503 7_3:-67574926 Msa1118800:CDS
GTAGCAAATATACCATATGG+TGG 0.679072 7_3:-67575667 Msa1118800:CDS
GGAAGAGTATATCTGGACAA+CGG 0.713291 7_3:-67575076 Msa1118800:CDS
CAGTTTGGGAGTTAACCGTG+TGG 0.725194 7_3:-67573904 Msa1118800:CDS
GGAGTAAAAGGATTCCATGG+TGG 0.733664 7_3:-67574809 Msa1118800:CDS
AGGGATCAGATACCATCCTG+AGG 0.734957 7_3:-67576031 Msa1118800:intron
AAGCATACCAAAGAGCACAA+GGG 0.741728 7_3:-67574830 Msa1118800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr7_3:67574874-67574893 Msa1118800:CDS 0.0%
!! TCTAATTCAATTAAAAAAAA+AGG + chr7_3:67573882-67573901 None:intergenic 10.0%
!! TAAATTTATAAAGTGATTAA+TGG + chr7_3:67574428-67574447 None:intergenic 10.0%
!! TAATCACTTTATAAATTTAA+TGG - chr7_3:67574429-67574448 Msa1118800:intron 10.0%
!!! AATTTTATAAAGTTTAACAT+TGG - chr7_3:67574992-67575011 Msa1118800:intron 10.0%
!! AAAATTAATATAATCAACAT+AGG - chr7_3:67575675-67575694 Msa1118800:CDS 10.0%
!! AATATAAATATTGTTAAAGA+TGG - chr7_3:67576605-67576624 Msa1118800:intron 10.0%
!!! ATTCTATTTTGTTATTATTT+TGG - chr7_3:67578508-67578527 Msa1118800:intron 10.0%
!!! CAGTAATAATTTTAAAAAAA+TGG + chr7_3:67578942-67578961 None:intergenic 10.0%
!!! CATTTTTTTAAAATTATTAC+TGG - chr7_3:67578940-67578959 Msa1118800:intron 10.0%
!! TTGACAATCTTAAATATTAT+AGG - chr7_3:67575743-67575762 Msa1118800:intron 15.0%
!!! TTAAGGTAATGTTTTAATTA+AGG - chr7_3:67576262-67576281 Msa1118800:CDS 15.0%
!! CAATTAATCATAAAAAGATT+AGG + chr7_3:67576460-67576479 None:intergenic 15.0%
!!! CTAATCTTTTTATGATTAAT+TGG - chr7_3:67576458-67576477 Msa1118800:intron 15.0%
!! ATATGTCATAAAATACAAAA+AGG + chr7_3:67576529-67576548 None:intergenic 15.0%
!! AATATAAACTAGTAAAAGTA+TGG + chr7_3:67576553-67576572 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGTATAGG+AGG + chr7_3:67577214-67577233 None:intergenic 15.0%
!! TTATATCATTGATGTAATTA+TGG - chr7_3:67577704-67577723 Msa1118800:intron 15.0%
!! AACAAATTTAGAAAAGTTAA+TGG + chr7_3:67577924-67577943 None:intergenic 15.0%
!! AATAACAAAAGAAATATCTA+AGG - chr7_3:67578482-67578501 Msa1118800:intron 15.0%
!!! ATTTTGTTATTATTTTGGTA+TGG - chr7_3:67578513-67578532 Msa1118800:intron 15.0%
!!! ATCTTTTTTCAAGTTTTATG+TGG - chr7_3:67574106-67574125 Msa1118800:intron 20.0%
!!! TAATGATAAGAACTTGTTAA+AGG - chr7_3:67574247-67574266 Msa1118800:intron 20.0%
!!! AACATTTGTTGTTTAAGTTT+CGG + chr7_3:67575128-67575147 None:intergenic 20.0%
!!! TTTTGTTTTTGTTGTGTATT+TGG - chr7_3:67575327-67575346 Msa1118800:CDS 20.0%
!! TGTAGATGATAAAAATTAAG+AGG - chr7_3:67575436-67575455 Msa1118800:intron 20.0%
!!! TAATTTTAGTCACTCAAATA+AGG + chr7_3:67575634-67575653 None:intergenic 20.0%
!! TAATATAATCAACATAGGAT+AGG - chr7_3:67575680-67575699 Msa1118800:CDS 20.0%
!! AGGATTTAATAATTGTGAAA+TGG - chr7_3:67575763-67575782 Msa1118800:intron 20.0%
!! GGATTTAATAATTGTGAAAT+GGG - chr7_3:67575764-67575783 Msa1118800:intron 20.0%
!! TTGTTGTATTAGCAAATATT+TGG - chr7_3:67576160-67576179 Msa1118800:intron 20.0%
!!! GTGTCAAATTTTCAATAAAA+AGG - chr7_3:67576202-67576221 Msa1118800:intron 20.0%
!!! AATTTTCAATAAAAAGGACA+AGG - chr7_3:67576208-67576227 Msa1118800:intron 20.0%
!! ATTAGAATATAAATAACCTC+AGG + chr7_3:67577106-67577125 None:intergenic 20.0%
!! AAAAAATCTTAATTACCAAG+TGG - chr7_3:67577129-67577148 Msa1118800:intron 20.0%
!!! TTATGGATTAACATGATTTT+TGG - chr7_3:67577721-67577740 Msa1118800:intron 20.0%
!! TAGAAAGATGAAAAAAATCA+AGG - chr7_3:67578654-67578673 Msa1118800:intron 20.0%
!!! TTACAGATTCTAAAGAAAAA+AGG - chr7_3:67578702-67578721 Msa1118800:intron 20.0%
!! AATTAAACTCTGATTTCATA+TGG - chr7_3:67578814-67578833 Msa1118800:intron 20.0%
!! ATTCTAACTCATTAAACAAA+TGG + chr7_3:67579446-67579465 None:intergenic 20.0%
!! CCTTAAAATACTTAATACTA+GGG - chr7_3:67579507-67579526 Msa1118800:five_prime_UTR 20.0%
! AAATTAGCAAAGGAAAATGT+GGG + chr7_3:67573604-67573623 None:intergenic 25.0%
! AAAATTAGCAAAGGAAAATG+TGG + chr7_3:67573605-67573624 None:intergenic 25.0%
! CATTACAATAATGACTTGAA+GGG + chr7_3:67573666-67573685 None:intergenic 25.0%
! CAGAATATGATGCTTAAATA+TGG + chr7_3:67573760-67573779 None:intergenic 25.0%
! GTCATATTTGCAAATTAACA+AGG - chr7_3:67573851-67573870 Msa1118800:exon 25.0%
! TTGAATTAGATTCCTTTGTT+TGG - chr7_3:67573892-67573911 Msa1118800:CDS 25.0%
!! TGAATTAGATTCCTTTGTTT+GGG - chr7_3:67573893-67573912 Msa1118800:CDS 25.0%
!!! TTTTTCAAGTTTTATGTGGT+TGG - chr7_3:67574110-67574129 Msa1118800:intron 25.0%
! AATCGAATAATAATACGACA+CGG + chr7_3:67574552-67574571 None:intergenic 25.0%
! ACTTCAATTACTCAAATTGA+TGG + chr7_3:67574708-67574727 None:intergenic 25.0%
! TTAAGTGACATACTAGTATT+TGG + chr7_3:67574767-67574786 None:intergenic 25.0%
! TAAAAGAAGAACATCTTAAC+TGG - chr7_3:67574842-67574861 Msa1118800:CDS 25.0%
! AAAAGAAGAACATCTTAACT+GGG - chr7_3:67574843-67574862 Msa1118800:CDS 25.0%
! CAGATAAAACTGTAATTAAG+TGG - chr7_3:67575015-67575034 Msa1118800:intron 25.0%
! AGACTTTCATAAAACTTTAC+CGG + chr7_3:67575201-67575220 None:intergenic 25.0%
!!! TATTTGGTTTTAGTGAGAAA+TGG - chr7_3:67575343-67575362 Msa1118800:intron 25.0%
!! ATGTCAAATACGTTGTTATT+TGG - chr7_3:67575387-67575406 Msa1118800:intron 25.0%
!!! TGTCAAATACGTTGTTATTT+GGG - chr7_3:67575388-67575407 Msa1118800:intron 25.0%
! AGATGATAAAAATTAAGAGG+AGG - chr7_3:67575439-67575458 Msa1118800:intron 25.0%
! AGGATAGAGATAAACATATA+CGG - chr7_3:67575459-67575478 Msa1118800:intron 25.0%
! CTAGCATGCATAAATATTAT+AGG - chr7_3:67575711-67575730 Msa1118800:CDS 25.0%
! TTACAAATATACATATCCCA+CGG + chr7_3:67575859-67575878 None:intergenic 25.0%
!! ATCTAATGGATACAAAGTTA+TGG - chr7_3:67575917-67575936 Msa1118800:intron 25.0%
! ATACAAAGTTATGGATACAA+TGG - chr7_3:67575926-67575945 Msa1118800:intron 25.0%
! TGTATCTAAATGGAAATTGT+GGG + chr7_3:67576078-67576097 None:intergenic 25.0%
!!! ATATATTTAGCCTTTTCTAG+AGG - chr7_3:67576406-67576425 Msa1118800:intron 25.0%
!! ACATAAAAATCCTCTAGAAA+AGG + chr7_3:67576419-67576438 None:intergenic 25.0%
!! ATATTTGTTGACATTGACTA+TGG - chr7_3:67576568-67576587 Msa1118800:intron 25.0%
! AAAAGGTTGAATATTGTGTT+AGG - chr7_3:67576725-67576744 Msa1118800:intron 25.0%
!!! TACAAACAGGAATTTTAAGT+TGG - chr7_3:67576789-67576808 Msa1118800:intron 25.0%
! AAAGTTTACTCATTCCATTT+AGG - chr7_3:67576848-67576867 Msa1118800:intron 25.0%
! AAGTTTACTCATTCCATTTA+GGG - chr7_3:67576849-67576868 Msa1118800:intron 25.0%
!! TTCTAGCAAATTTGTTTACT+AGG - chr7_3:67576907-67576926 Msa1118800:intron 25.0%
! TATTGCAAATTCAAATGAAC+TGG - chr7_3:67577305-67577324 Msa1118800:intron 25.0%
!! AAACTGTTATGTGTGTTTTT+AGG - chr7_3:67577334-67577353 Msa1118800:intron 25.0%
! TCTGAATATGAATCGTTTAT+TGG - chr7_3:67577365-67577384 Msa1118800:intron 25.0%
! AATCGTTTATTGGAATGATT+AGG - chr7_3:67577375-67577394 Msa1118800:intron 25.0%
! CAGATATACTTAATTCTGAA+GGG + chr7_3:67577501-67577520 None:intergenic 25.0%
! TCAGATATACTTAATTCTGA+AGG + chr7_3:67577502-67577521 None:intergenic 25.0%
!! AATTTTCTGAGTAAAAACTC+TGG + chr7_3:67577539-67577558 None:intergenic 25.0%
! CAGAAAATTCATGATCTAAT+TGG - chr7_3:67577550-67577569 Msa1118800:intron 25.0%
! GATGAATATTCCAAATTTCA+CGG - chr7_3:67577798-67577817 Msa1118800:intron 25.0%
! TGCAAACAATTACTTACTAT+AGG + chr7_3:67577852-67577871 None:intergenic 25.0%
! AGTTAATGGTTTATTAAGCA+TGG + chr7_3:67577910-67577929 None:intergenic 25.0%
! TGAAGAAGTTCTTAAATGAA+AGG + chr7_3:67578092-67578111 None:intergenic 25.0%
!! AACTTCTTCAATGAAGTTTT+TGG - chr7_3:67578102-67578121 Msa1118800:intron 25.0%
!!! AGAGTTAGTTTTCTATTCTA+AGG - chr7_3:67578450-67578469 Msa1118800:intron 25.0%
!!! TATTATTTTGGTATGGTTGA+AGG - chr7_3:67578520-67578539 Msa1118800:intron 25.0%
!!! ATTATTTTGGTATGGTTGAA+GGG - chr7_3:67578521-67578540 Msa1118800:intron 25.0%
! GGAAAATGCAAATGAAATTA+AGG - chr7_3:67578542-67578561 Msa1118800:intron 25.0%
!!! TTCTTTAGAATCTGTAAGTA+AGG + chr7_3:67578699-67578718 None:intergenic 25.0%
! GAAATCAGTGATAAAATTCA+GGG + chr7_3:67579386-67579405 None:intergenic 25.0%
! TGAAATCAGTGATAAAATTC+AGG + chr7_3:67579387-67579406 None:intergenic 25.0%
! GCCTTAAAATACTTAATACT+AGG - chr7_3:67579506-67579525 Msa1118800:five_prime_UTR 25.0%
!! CCCTAGTATTAAGTATTTTA+AGG + chr7_3:67579510-67579529 None:intergenic 25.0%
GTAGAGCATAAAATTAGCAA+AGG + chr7_3:67573614-67573633 None:intergenic 30.0%
CCATTACAATAATGACTTGA+AGG + chr7_3:67573667-67573686 None:intergenic 30.0%
CCTTCAAGTCATTATTGTAA+TGG - chr7_3:67573664-67573683 Msa1118800:three_prime_UTR 30.0%
GTCATTATTGTAATGGTTGA+AGG - chr7_3:67573671-67573690 Msa1118800:three_prime_UTR 30.0%
GATGCTTAAATATGGTTAGA+GGG + chr7_3:67573752-67573771 None:intergenic 30.0%
TGATGCTTAAATATGGTTAG+AGG + chr7_3:67573753-67573772 None:intergenic 30.0%
AACTAAGGGAGAATAAGAAT+TGG + chr7_3:67573922-67573941 None:intergenic 30.0%
!! TCTTATTCTCCCTTAGTTTT+TGG - chr7_3:67573924-67573943 Msa1118800:CDS 30.0%
!! CTTATTCTCCCTTAGTTTTT+GGG - chr7_3:67573925-67573944 Msa1118800:CDS 30.0%
!! TTATTCTCCCTTAGTTTTTG+GGG - chr7_3:67573926-67573945 Msa1118800:CDS 30.0%
AACATACCAAGAAATGTAGA+GGG + chr7_3:67574031-67574050 None:intergenic 30.0%
AAACATACCAAGAAATGTAG+AGG + chr7_3:67574032-67574051 None:intergenic 30.0%
AAATATGCAATGCAAAGATG+AGG + chr7_3:67574275-67574294 None:intergenic 30.0%
!!! TTTTGCTTTGAAACTCTTGA+TGG - chr7_3:67574292-67574311 Msa1118800:intron 30.0%
GAGTCAAAAGTTGGATAATT+TGG + chr7_3:67574472-67574491 None:intergenic 30.0%
ACATTGAAAGAGTCAAAAGT+TGG + chr7_3:67574481-67574500 None:intergenic 30.0%
!! ACTTTTGACTCTTTCAATGT+CGG - chr7_3:67574481-67574500 Msa1118800:intron 30.0%
! AGTTTGACCACATTTTCATT+AGG + chr7_3:67574512-67574531 None:intergenic 30.0%
TAATTGAAGTAGTGAATTGC+TGG - chr7_3:67574718-67574737 Msa1118800:intron 30.0%
AAAGAAGAACATCTTAACTG+GGG - chr7_3:67574844-67574863 Msa1118800:CDS 30.0%
AAATTAATACAGCCCAATGA+GGG - chr7_3:67574938-67574957 Msa1118800:CDS 30.0%
!!! ACCTCTTTAAGTTTTAGGTT+AGG - chr7_3:67575075-67575094 Msa1118800:CDS 30.0%
TCCTAACCTAAAACTTAAAG+AGG + chr7_3:67575079-67575098 None:intergenic 30.0%
AGGAAATGTAAGAAAGCTTA+TGG - chr7_3:67575095-67575114 Msa1118800:CDS 30.0%
TGAAATGTTAAGAATGTCCT+TGG - chr7_3:67575157-67575176 Msa1118800:CDS 30.0%
!! ATTGACTCTTTCAAGGTTTT+AGG + chr7_3:67575519-67575538 None:intergenic 30.0%
! GTTTGAAATTGACTCTTTCA+AGG + chr7_3:67575526-67575545 None:intergenic 30.0%
AAACATGTATTAATCCTCGT+TGG + chr7_3:67575570-67575589 None:intergenic 30.0%
CTAATGTTCATACACATATG+TGG - chr7_3:67575888-67575907 Msa1118800:intron 30.0%
CTTTGTATCCATTAGATAAG+AGG + chr7_3:67575914-67575933 None:intergenic 30.0%
GGCTATAAAATTATGTGAAG+AGG + chr7_3:67576037-67576056 None:intergenic 30.0%
CTGTATCTAAATGGAAATTG+TGG + chr7_3:67576079-67576098 None:intergenic 30.0%
! GTTTGGAATCTGTATCTAAA+TGG + chr7_3:67576088-67576107 None:intergenic 30.0%
TCAAGAAGTTTCAAATGGTT+TGG + chr7_3:67576105-67576124 None:intergenic 30.0%
CAACATCAAGAAGTTTCAAA+TGG + chr7_3:67576110-67576129 None:intergenic 30.0%
AACTTCTTGATGTTGTACAA+AGG - chr7_3:67576115-67576134 Msa1118800:CDS 30.0%
ACACGTTATGTGATACTATT+GGG + chr7_3:67576186-67576205 None:intergenic 30.0%
! AATAAAAAGGACAAGGTGTT+TGG - chr7_3:67576215-67576234 Msa1118800:intron 30.0%
TACACATTTCATTCAAAAGC+TGG - chr7_3:67576239-67576258 Msa1118800:intron 30.0%
TTTCATTCAAAAGCTGGTTA+AGG - chr7_3:67576245-67576264 Msa1118800:intron 30.0%
TTTACCTTGATTTCCCTAAA+TGG + chr7_3:67576865-67576884 None:intergenic 30.0%
TGTTCTGTTTCATGTTATTG+TGG - chr7_3:67576941-67576960 Msa1118800:intron 30.0%
! TATTGTGGTTTTCTGAATGA+CGG - chr7_3:67576956-67576975 Msa1118800:intron 30.0%
! TACATTCAACCTGAATTTTC+AGG + chr7_3:67576985-67577004 None:intergenic 30.0%
GAATATAAATAACCTCAGGA+TGG + chr7_3:67577102-67577121 None:intergenic 30.0%
TGACAAAAACTAAATCTCAG+TGG + chr7_3:67577183-67577202 None:intergenic 30.0%
AGTACTCAATGATTCGTATA+TGG - chr7_3:67577250-67577269 Msa1118800:intron 30.0%
AGAATTTACTAACTAACCTG+TGG + chr7_3:67577616-67577635 None:intergenic 30.0%
ATTCTACAAGATTGATGTTG+CGG - chr7_3:67577631-67577650 Msa1118800:intron 30.0%
TGGGAATCTTGATTATACTT+TGG - chr7_3:67577667-67577686 Msa1118800:intron 30.0%
TTTGTTTCCTTTGTCAAACT+AGG - chr7_3:67577938-67577957 Msa1118800:intron 30.0%
ACCATATTGTGTATTTGTTC+AGG - chr7_3:67578140-67578159 Msa1118800:intron 30.0%
CCATATTGTGTATTTGTTCA+GGG - chr7_3:67578141-67578160 Msa1118800:intron 30.0%
GCACAATTAATTGATGAGAA+AGG - chr7_3:67578189-67578208 Msa1118800:intron 30.0%
CAATTAATTGATGAGAAAGG+CGG - chr7_3:67578192-67578211 Msa1118800:intron 30.0%
GTAAGGAAGGTAATTAACAA+CGG + chr7_3:67578682-67578701 None:intergenic 30.0%
TTAGAATCTGTAAGTAAGGA+AGG + chr7_3:67578695-67578714 None:intergenic 30.0%
CTGAATTTGCATAAATGTCT+GGG + chr7_3:67578740-67578759 None:intergenic 30.0%
! GGTGTTACATAAGTTATAAG+TGG + chr7_3:67578857-67578876 None:intergenic 30.0%
ACTAAACACTTGAACAAACA+CGG + chr7_3:67578995-67579014 None:intergenic 30.0%
AGCTAAAAAACTACATGAAC+AGG - chr7_3:67579129-67579148 Msa1118800:five_prime_UTR 30.0%
GCTAAAAAACTACATGAACA+GGG - chr7_3:67579130-67579149 Msa1118800:five_prime_UTR 30.0%
CTAAAAAACTACATGAACAG+GGG - chr7_3:67579131-67579150 Msa1118800:five_prime_UTR 30.0%
!! TTTATCACTGATTTCAGAAG+AGG - chr7_3:67579391-67579410 Msa1118800:intron 30.0%
!! TTATCACTGATTTCAGAAGA+GGG - chr7_3:67579392-67579411 Msa1118800:intron 30.0%
GTTAATCCAAGAATAGTACA+TGG + chr7_3:67579420-67579439 None:intergenic 30.0%
!!! AGTATTTTAAGGCTTACAGA+TGG + chr7_3:67579499-67579518 None:intergenic 30.0%
AATACTTAATACTAGGGACT+TGG - chr7_3:67579513-67579532 Msa1118800:five_prime_UTR 30.0%
! ATATGCTTTCTAGTGTCTAG+TGG - chr7_3:67573712-67573731 Msa1118800:three_prime_UTR 35.0%
! TATGCTTTCTAGTGTCTAGT+GGG - chr7_3:67573713-67573732 Msa1118800:three_prime_UTR 35.0%
GTCAGAAAGAATCAAAAGTG+AGG + chr7_3:67573790-67573809 None:intergenic 35.0%
AGAATTGGATTCCCAAACAA+AGG + chr7_3:67573907-67573926 None:intergenic 35.0%
!! TATTCTCCCTTAGTTTTTGG+GGG - chr7_3:67573927-67573946 Msa1118800:CDS 35.0%
TAAGAACCCCCAAAAACTAA+GGG + chr7_3:67573936-67573955 None:intergenic 35.0%
TTAAGAACCCCCAAAAACTA+AGG + chr7_3:67573937-67573956 None:intergenic 35.0%
! TCACATTGCTTTGTTAAGCT+TGG - chr7_3:67573995-67574014 Msa1118800:CDS 35.0%
GATTTCAGTAGTCTCTAGAT+CGG - chr7_3:67574340-67574359 Msa1118800:intron 35.0%
ATTTCAGTAGTCTCTAGATC+GGG - chr7_3:67574341-67574360 Msa1118800:intron 35.0%
ATCTACCCTTTATCTTCTTG+TGG - chr7_3:67574381-67574400 Msa1118800:CDS 35.0%
GCAAACCACAAGAAGATAAA+GGG + chr7_3:67574389-67574408 None:intergenic 35.0%
TGCAAACCACAAGAAGATAA+AGG + chr7_3:67574390-67574409 None:intergenic 35.0%
ATTAATGGTGTGAGATATGG+AGG + chr7_3:67574413-67574432 None:intergenic 35.0%
GTGATTAATGGTGTGAGATA+TGG + chr7_3:67574416-67574435 None:intergenic 35.0%
GAACTGATTGGATATGTGTA+AGG - chr7_3:67574603-67574622 Msa1118800:intron 35.0%
GATTGGATATGTGTAAGGAA+TGG - chr7_3:67574608-67574627 Msa1118800:intron 35.0%
CAAATTAATACAGCCCAATG+AGG - chr7_3:67574937-67574956 Msa1118800:CDS 35.0%
!! CATGCACCTCTTTAAGTTTT+AGG - chr7_3:67575070-67575089 Msa1118800:CDS 35.0%
TCATAAAACTTTACCGGTGT+GGG + chr7_3:67575195-67575214 None:intergenic 35.0%
TTCATAAAACTTTACCGGTG+TGG + chr7_3:67575196-67575215 None:intergenic 35.0%
!! AATGCTTAAAGAGTATCACG+TGG - chr7_3:67575284-67575303 Msa1118800:intron 35.0%
ATATGTGGCCTCTTATCTAA+TGG - chr7_3:67575903-67575922 Msa1118800:intron 35.0%
TTTACCTCATGCGTAAGAAT+AGG - chr7_3:67575950-67575969 Msa1118800:intron 35.0%
! TATGTGAAGAGGTATGATTC+AGG + chr7_3:67576026-67576045 None:intergenic 35.0%
!! GGGAATCATTTGGTTCTAAA+TGG + chr7_3:67576058-67576077 None:intergenic 35.0%
TGGAAATTGTGGGAATCATT+TGG + chr7_3:67576068-67576087 None:intergenic 35.0%
GACACGTTATGTGATACTAT+TGG + chr7_3:67576187-67576206 None:intergenic 35.0%
AAGAAGCTGGAACATAAAAC+AGG - chr7_3:67576343-67576362 Msa1118800:CDS 35.0%
! ATTGGTGACAATGATACACA+TGG - chr7_3:67576476-67576495 Msa1118800:intron 35.0%
! ACCTTTTATCAAAAGAGACG+CGG + chr7_3:67576712-67576731 None:intergenic 35.0%
TTGTGTTAGGTTCTTCTAGT+TGG - chr7_3:67576738-67576757 Msa1118800:intron 35.0%
!!! GGAATTTTAAGTTGGCTTCT+AGG - chr7_3:67576797-67576816 Msa1118800:intron 35.0%
! GAGTAAACTTTTCTCAAGCT+TGG + chr7_3:67576839-67576858 None:intergenic 35.0%
CATTCCATTTAGGGAAATCA+AGG - chr7_3:67576858-67576877 Msa1118800:intron 35.0%
TGTACCATTCCAAAAGATGA+CGG - chr7_3:67577001-67577020 Msa1118800:intron 35.0%
! GTTCAACATGATAATGCTAG+AGG - chr7_3:67577052-67577071 Msa1118800:intron 35.0%
GATTCGTATATGGTTGTTTG+TGG - chr7_3:67577260-67577279 Msa1118800:intron 35.0%
GCTGTAGCAAATATACCATA+TGG - chr7_3:67577448-67577467 Msa1118800:intron 35.0%
GTAGCAAATATACCATATGG+TGG - chr7_3:67577451-67577470 Msa1118800:intron 35.0%
TGATCTAATTGGAACTCACA+TGG - chr7_3:67577561-67577580 Msa1118800:intron 35.0%
TTTGATATGAATGCAGACCA+TGG - chr7_3:67577764-67577783 Msa1118800:intron 35.0%
ATACTCATTAAGCAAAGCCT+CGG + chr7_3:67578021-67578040 None:intergenic 35.0%
AGGCTTTGCTTAATGAGTAT+GGG - chr7_3:67578021-67578040 Msa1118800:intron 35.0%
CCCTGAACAAATACACAATA+TGG + chr7_3:67578144-67578163 None:intergenic 35.0%
! TGTGTATTTGTTCAGGGTTT+TGG - chr7_3:67578147-67578166 Msa1118800:intron 35.0%
!!! TTCAGGGTTTTGGAAATGTA+GGG - chr7_3:67578157-67578176 Msa1118800:intron 35.0%
!! TTTTGGAAATGTAGGGTCTT+GGG - chr7_3:67578164-67578183 Msa1118800:intron 35.0%
!! AAGACCTTTGCTGTTCTTTA+TGG + chr7_3:67578250-67578269 None:intergenic 35.0%
AATCAAATGAATCACCACCA+TGG + chr7_3:67578326-67578345 None:intergenic 35.0%
CCTGAATTTGCATAAATGTC+TGG + chr7_3:67578741-67578760 None:intergenic 35.0%
CCAGACATTTATGCAAATTC+AGG - chr7_3:67578738-67578757 Msa1118800:intron 35.0%
GACATTTATGCAAATTCAGG+AGG - chr7_3:67578741-67578760 Msa1118800:intron 35.0%
! TTACAGTTAGCTACTTTGAG+TGG - chr7_3:67578766-67578785 Msa1118800:intron 35.0%
! TACAGTTAGCTACTTTGAGT+GGG - chr7_3:67578767-67578786 Msa1118800:intron 35.0%
GTATTGAAGGCTTATTGACA+CGG - chr7_3:67578885-67578904 Msa1118800:intron 35.0%
AAGTGATTGAGTGCAACAAT+AGG + chr7_3:67578919-67578938 None:intergenic 35.0%
ACAATGAACACAACATTGAC+AGG + chr7_3:67578972-67578991 None:intergenic 35.0%
TGTTGCTCTTATGTCTTATG+TGG - chr7_3:67579042-67579061 Msa1118800:intron 35.0%
TGATATACACAGAACATCCA+AGG - chr7_3:67579074-67579093 Msa1118800:intron 35.0%
GATATACACAGAACATCCAA+GGG - chr7_3:67579075-67579094 Msa1118800:intron 35.0%
TCATGAATGTGATCTTCGAA+TGG - chr7_3:67579184-67579203 Msa1118800:intron 35.0%
CATGAATGTGATCTTCGAAT+GGG - chr7_3:67579185-67579204 Msa1118800:intron 35.0%
GTACTCAGATCAACATGCTT+AGG + chr7_3:67573812-67573831 None:intergenic 40.0%
AGCAATGTGAAACAAGTGAG+TGG + chr7_3:67573985-67574004 None:intergenic 40.0%
GCATTTCCCTCTACATTTCT+TGG - chr7_3:67574022-67574041 Msa1118800:CDS 40.0%
! TATGTGTTGCTCTTTGCATC+AGG - chr7_3:67574167-67574186 Msa1118800:intron 40.0%
! TGACTCTTTCAATGTCGGTT+TGG - chr7_3:67574486-67574505 Msa1118800:intron 40.0%
GGTTTGGCCTAATGAAAATG+TGG - chr7_3:67574502-67574521 Msa1118800:intron 40.0%
TGACGTGTACTTGAACTGAT+TGG - chr7_3:67574591-67574610 Msa1118800:intron 40.0%
AAGAACATCTTAACTGGGGA+AGG - chr7_3:67574848-67574867 Msa1118800:CDS 40.0%
! TTAAAGAGGTGCATGTGACA+GGG + chr7_3:67575065-67575084 None:intergenic 40.0%
AGAGTTACTCAATCCTAACG+TGG - chr7_3:67575807-67575826 Msa1118800:intron 40.0%
ATATCCCACGGCTTATTAAG+CGG + chr7_3:67575847-67575866 None:intergenic 40.0%
TAGTCCTATTCTTACGCATG+AGG + chr7_3:67575957-67575976 None:intergenic 40.0%
!!! CGTAGTGTTTTGAAAGAAGC+TGG - chr7_3:67576330-67576349 Msa1118800:CDS 40.0%
TGACAATGATACACATGGCA+TGG - chr7_3:67576481-67576500 Msa1118800:intron 40.0%
! TCCGCGTCTCTTTTGATAAA+AGG - chr7_3:67576708-67576727 Msa1118800:intron 40.0%
! TAGGTTCTTCTAGTTGGCAA+AGG - chr7_3:67576744-67576763 Msa1118800:intron 40.0%
! AGGTTCTTCTAGTTGGCAAA+GGG - chr7_3:67576745-67576764 Msa1118800:intron 40.0%
!! TAAGTTGGCTTCTAGGCTTT+TGG - chr7_3:67576804-67576823 Msa1118800:intron 40.0%
!! AAGTTGGCTTCTAGGCTTTT+GGG - chr7_3:67576805-67576824 Msa1118800:intron 40.0%
GGCACGTTGCAATCTTATAT+TGG - chr7_3:67577022-67577041 Msa1118800:intron 40.0%
TATCTGATCCCTCCTTTCAT+GGG + chr7_3:67577079-67577098 None:intergenic 40.0%
ATCTTAATTACCAAGTGGCG+TGG - chr7_3:67577134-67577153 Msa1118800:intron 40.0%
! GCTAAAGCATTCACTTCATC+TGG + chr7_3:67577406-67577425 None:intergenic 40.0%
CTTTAGCGCAACTAATGACA+TGG - chr7_3:67577419-67577438 Msa1118800:intron 40.0%
TTCATCTAGTATCCATGCCA+TGG + chr7_3:67577784-67577803 None:intergenic 40.0%
CCAAGATCCTAGTTTGACAA+AGG + chr7_3:67577948-67577967 None:intergenic 40.0%
CCTTTGTCAAACTAGGATCT+TGG - chr7_3:67577945-67577964 Msa1118800:intron 40.0%
TTGTCAAACTAGGATCTTGG+TGG - chr7_3:67577948-67577967 Msa1118800:intron 40.0%
! TAGGATCTTGGTGGATCTTT+AGG - chr7_3:67577957-67577976 Msa1118800:intron 40.0%
GAGGCTTTGCTTAATGAGTA+TGG - chr7_3:67578020-67578039 Msa1118800:intron 40.0%
! GAGTATGGGAAGAGTATATC+TGG - chr7_3:67578035-67578054 Msa1118800:intron 40.0%
! GGAAGAGTATATCTGGACAA+CGG - chr7_3:67578042-67578061 Msa1118800:intron 40.0%
!!! GTTCAGGGTTTTGGAAATGT+AGG - chr7_3:67578156-67578175 Msa1118800:intron 40.0%
!!! GTTTTGGAAATGTAGGGTCT+TGG - chr7_3:67578163-67578182 Msa1118800:intron 40.0%
! AAGCATACCAAAGAGCACAA+GGG - chr7_3:67578288-67578307 Msa1118800:intron 40.0%
! TTTTACTCCCTTGTGCTCTT+TGG + chr7_3:67578298-67578317 None:intergenic 40.0%
! AAAGAGCACAAGGGAGTAAA+AGG - chr7_3:67578297-67578316 Msa1118800:intron 40.0%
AAGGGAGTAAAAGGATTCCA+TGG - chr7_3:67578306-67578325 Msa1118800:intron 40.0%
AAGCCTTCAATACGAAGTGT+CGG + chr7_3:67578878-67578897 None:intergenic 40.0%
TTGAGTGCAACAATAGGTAG+CGG + chr7_3:67578913-67578932 None:intergenic 40.0%
AGAACATCCAAGGGTTTATG+TGG - chr7_3:67579084-67579103 Msa1118800:intron 40.0%
GAACATCCAAGGGTTTATGT+GGG - chr7_3:67579085-67579104 Msa1118800:intron 40.0%
AGGGTTCCATGTACTATTCT+TGG - chr7_3:67579411-67579430 Msa1118800:intron 40.0%
AGTTCAAGTACACGTCAGTG+TGG + chr7_3:67574588-67574607 None:intergenic 45.0%
! ATTGTGGAAGGCAGAGTACT+TGG - chr7_3:67574961-67574980 Msa1118800:intron 45.0%
! CTTAAAGAGGTGCATGTGAC+AGG + chr7_3:67575066-67575085 None:intergenic 45.0%
TCATGATTTCGTGCCACGTT+AGG + chr7_3:67575823-67575842 None:intergenic 45.0%
ATGATCCGCTTAATAAGCCG+TGG - chr7_3:67575839-67575858 Msa1118800:intron 45.0%
TGATCCGCTTAATAAGCCGT+GGG - chr7_3:67575840-67575859 Msa1118800:intron 45.0%
TTCAGGTGAGGTAGGAACTA+TGG + chr7_3:67576009-67576028 None:intergenic 45.0%
AGGTATGATTCAGGTGAGGT+AGG + chr7_3:67576017-67576036 None:intergenic 45.0%
! GAAGAGGTATGATTCAGGTG+AGG + chr7_3:67576021-67576040 None:intergenic 45.0%
ATGCACTAGCAGCTACAAAC+AGG - chr7_3:67576776-67576795 Msa1118800:intron 45.0%
TGACGGTGTCCTGAAAATTC+AGG - chr7_3:67576973-67576992 Msa1118800:intron 45.0%
ATCTGATCCCTCCTTTCATG+GGG + chr7_3:67577078-67577097 None:intergenic 45.0%
GTATCTGATCCCTCCTTTCA+TGG + chr7_3:67577080-67577099 None:intergenic 45.0%
! ATACCATATGGTGGTGCCAA+AGG - chr7_3:67577460-67577479 Msa1118800:intron 45.0%
GATGTTCCTGCACCTGATAT+GGG - chr7_3:67577583-67577602 Msa1118800:intron 45.0%
TATGAATGCAGACCATGGCA+TGG - chr7_3:67577769-67577788 Msa1118800:intron 45.0%
GTTGCTGTGAGTGACATAAC+TGG - chr7_3:67578222-67578241 Msa1118800:intron 45.0%
GGAGCCATAAAGAACAGCAA+AGG - chr7_3:67578243-67578262 Msa1118800:intron 45.0%
TGGTATGCTTGAGTAGGCTA+GGG + chr7_3:67578278-67578297 None:intergenic 45.0%
TTGGTATGCTTGAGTAGGCT+AGG + chr7_3:67578279-67578298 None:intergenic 45.0%
GCTCTTTGGTATGCTTGAGT+AGG + chr7_3:67578284-67578303 None:intergenic 45.0%
! CAAGCATACCAAAGAGCACA+AGG - chr7_3:67578287-67578306 Msa1118800:intron 45.0%
GGAGTAAAAGGATTCCATGG+TGG - chr7_3:67578309-67578328 Msa1118800:intron 45.0%
!! CTCTTGGAGGTGTCATCAAT+AGG - chr7_3:67578391-67578410 Msa1118800:intron 45.0%
AACCAACCTCATCAGCATCA+GGG + chr7_3:67578605-67578624 None:intergenic 45.0%
TAACCAACCTCATCAGCATC+AGG + chr7_3:67578606-67578625 None:intergenic 45.0%
! TAGCTACTTTGAGTGGGTTC+AGG - chr7_3:67578773-67578792 Msa1118800:intron 45.0%
ACACCGACACTTCGTATTGA+AGG - chr7_3:67578872-67578891 Msa1118800:intron 45.0%
TCGAATGGGAGCTTTCAGTT+TGG - chr7_3:67579199-67579218 Msa1118800:intron 45.0%
CGAATGGGAGCTTTCAGTTT+GGG - chr7_3:67579200-67579219 Msa1118800:intron 45.0%
!!! ATATTAATTTTTTTTTTGAA+AGG + chr7_3:67575666-67575685 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTGTAT+AGG + chr7_3:67577217-67577236 None:intergenic 5.0%
AAAGCTTGTGACTCCGTTGC+AGG - chr7_3:67573955-67573974 Msa1118800:CDS 50.0%
AGTGAGTGGAAGTCCTGCAA+CGG + chr7_3:67573971-67573990 None:intergenic 50.0%
TACAGCCCAATGAGGGATTG+TGG - chr7_3:67574945-67574964 Msa1118800:CDS 50.0%
GCCTTCCACAATCCCTCATT+GGG + chr7_3:67574953-67574972 None:intergenic 50.0%
TGCCTTCCACAATCCCTCAT+TGG + chr7_3:67574954-67574973 None:intergenic 50.0%
GTGGGTGCTTATAGTGTCCA+AGG + chr7_3:67575177-67575196 None:intergenic 50.0%
GACACTATAAGCACCCACAC+CGG - chr7_3:67575179-67575198 Msa1118800:intron 50.0%
! CCTCGTTGGTCTAGTGATGT+TGG + chr7_3:67575556-67575575 None:intergenic 50.0%
CCAACATCACTAGACCAACG+AGG - chr7_3:67575553-67575572 Msa1118800:CDS 50.0%
CACATGGCATGGCACATTGA+TGG - chr7_3:67576492-67576511 Msa1118800:intron 50.0%
!!! GGCTTCTAGGCTTTTGGGAT+TGG - chr7_3:67576810-67576829 Msa1118800:intron 50.0%
!! CGTGCCGTCATCTTTTGGAA+TGG + chr7_3:67577008-67577027 None:intergenic 50.0%
! TGCAACGTGCCGTCATCTTT+TGG + chr7_3:67577013-67577032 None:intergenic 50.0%
AATGCTAGAGGCCCCATGAA+AGG - chr7_3:67577064-67577083 Msa1118800:intron 50.0%
AGGGATCAGATACCATCCTG+AGG - chr7_3:67577087-67577106 Msa1118800:intron 50.0%
! CATATGGTGGTGCCAAAGGA+GGG - chr7_3:67577464-67577483 Msa1118800:intron 50.0%
GTTACACCCTATCCCTCCTT+TGG + chr7_3:67577479-67577498 None:intergenic 50.0%
GGATGTTCCTGCACCTGATA+TGG - chr7_3:67577582-67577601 Msa1118800:intron 50.0%
TGTGGTCCTGTTCCCATATC+AGG + chr7_3:67577598-67577617 None:intergenic 50.0%
TGATATGGGAACAGGACCAC+AGG - chr7_3:67577597-67577616 Msa1118800:intron 50.0%
TTGCGGTCGCAATTGCAGTT+GGG - chr7_3:67577648-67577667 Msa1118800:intron 50.0%
AGGCGAGTAGCCGTGAAATT+TGG + chr7_3:67577811-67577830 None:intergenic 50.0%
TTAGGTAGAGACGCAGCTAC+AGG - chr7_3:67577975-67577994 Msa1118800:intron 50.0%
AGGAGTTATGTTTGCAGCCG+AGG - chr7_3:67578001-67578020 Msa1118800:intron 50.0%
TGGACAACGGTTCGTCATTC+AGG - chr7_3:67578055-67578074 Msa1118800:intron 50.0%
GTTCTAATCCCAGCAGCTCT+TGG - chr7_3:67578375-67578394 Msa1118800:intron 50.0%
CATCAGCATCAGGGTCAGTT+GGG + chr7_3:67578596-67578615 None:intergenic 50.0%
TCATCAGCATCAGGGTCAGT+TGG + chr7_3:67578597-67578616 None:intergenic 50.0%
AACTGACCCTGATGCTGATG+AGG - chr7_3:67578596-67578615 Msa1118800:intron 50.0%
CCTCATCCCACATAAACCCT+TGG + chr7_3:67579094-67579113 None:intergenic 50.0%
CCAAGGGTTTATGTGGGATG+AGG - chr7_3:67579091-67579110 Msa1118800:intron 50.0%
CAGTTTGGGAGTTAACCGTG+TGG - chr7_3:67579214-67579233 Msa1118800:intron 50.0%
GGCTACTGTCCTTAGAGGTT+GGG - chr7_3:67579241-67579260 Msa1118800:intron 50.0%
CTCAAGCTTCCCAACCTCTA+AGG + chr7_3:67579253-67579272 None:intergenic 50.0%
GAGATCTTGTCGTTGCTGCT+TGG - chr7_3:67579270-67579289 Msa1118800:intron 50.0%
GCCCAATGAGGGATTGTGGA+AGG - chr7_3:67574949-67574968 Msa1118800:CDS 55.0%
CTAGAGGCCCCATGAAAGGA+GGG - chr7_3:67577068-67577087 Msa1118800:intron 55.0%
TGTCACTATGCCACGCCACT+TGG + chr7_3:67577147-67577166 None:intergenic 55.0%
CCTCCTTTGGCACCACCATA+TGG + chr7_3:67577466-67577485 None:intergenic 55.0%
! CCATATGGTGGTGCCAAAGG+AGG - chr7_3:67577463-67577482 Msa1118800:intron 55.0%
! GTGGTGCCAAAGGAGGGATA+GGG - chr7_3:67577470-67577489 Msa1118800:intron 55.0%
CCTGTTCCCATATCAGGTGC+AGG + chr7_3:67577592-67577611 None:intergenic 55.0%
CCTGCACCTGATATGGGAAC+AGG - chr7_3:67577589-67577608 Msa1118800:intron 55.0%
GTTGCGGTCGCAATTGCAGT+TGG - chr7_3:67577647-67577666 Msa1118800:intron 55.0%
! GGTTTTCCAGTCACCACTGC+AGG + chr7_3:67577831-67577850 None:intergenic 55.0%
AGAGACGCAGCTACAGGAAG+AGG - chr7_3:67577981-67578000 Msa1118800:intron 55.0%
CTAATCCCAGCAGCTCTTGG+AGG - chr7_3:67578378-67578397 Msa1118800:intron 55.0%
TGACACCTCCAAGAGCTGCT+GGG + chr7_3:67578386-67578405 None:intergenic 55.0%
ATGACACCTCCAAGAGCTGC+TGG + chr7_3:67578387-67578406 None:intergenic 55.0%
GACCCTGATGCTGATGAGGT+TGG - chr7_3:67578600-67578619 Msa1118800:intron 55.0%
TGGGAGTTAACCGTGTGGCA+AGG - chr7_3:67579219-67579238 Msa1118800:intron 55.0%
GGGAGTTAACCGTGTGGCAA+GGG - chr7_3:67579220-67579239 Msa1118800:intron 55.0%
GCAAGGGCTACTGTCCTTAG+AGG - chr7_3:67579236-67579255 Msa1118800:intron 55.0%
GGGCTACTGTCCTTAGAGGT+TGG - chr7_3:67579240-67579259 Msa1118800:intron 55.0%
GCTAGAGGCCCCATGAAAGG+AGG - chr7_3:67577067-67577086 Msa1118800:intron 60.0%
! GGTGGTGCCAAAGGAGGGAT+AGG - chr7_3:67577469-67577488 Msa1118800:intron 60.0%
TACTCGCCTGCAGTGGTGAC+TGG - chr7_3:67577822-67577841 Msa1118800:intron 60.0%
GGACAGTAGCCCTTGCCACA+CGG + chr7_3:67579232-67579251 None:intergenic 60.0%
TCACGGCTACTCGCCTGCAG+TGG - chr7_3:67577815-67577834 Msa1118800:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 67573590 67579550 67573590 ID=Msa1118800;Name=Msa1118800
chr7_3 mRNA 67573590 67579550 67573590 ID=Msa1118800-mRNA-1;Parent=Msa1118800;Name=Msa1118800-mRNA-1;_AED=0.28;_eAED=0.28;_QI=195|1|1|1|0.8|0.81|11|279|411
chr7_3 exon 67573590 67574054 67573590 ID=Msa1118800-mRNA-1:exon:16668;Parent=Msa1118800-mRNA-1
chr7_3 exon 67574346 67574432 67574346 ID=Msa1118800-mRNA-1:exon:16667;Parent=Msa1118800-mRNA-1
chr7_3 exon 67574523 67574598 67574523 ID=Msa1118800-mRNA-1:exon:16666;Parent=Msa1118800-mRNA-1
chr7_3 exon 67574728 67574978 67574728 ID=Msa1118800-mRNA-1:exon:16665;Parent=Msa1118800-mRNA-1
chr7_3 exon 67575064 67575180 67575064 ID=Msa1118800-mRNA-1:exon:16664;Parent=Msa1118800-mRNA-1
chr7_3 exon 67575286 67575360 67575286 ID=Msa1118800-mRNA-1:exon:16663;Parent=Msa1118800-mRNA-1
chr7_3 exon 67575522 67575743 67575522 ID=Msa1118800-mRNA-1:exon:16662;Parent=Msa1118800-mRNA-1
chr7_3 exon 67576032 67576145 67576032 ID=Msa1118800-mRNA-1:exon:16661;Parent=Msa1118800-mRNA-1
chr7_3 exon 67576261 67576393 67576261 ID=Msa1118800-mRNA-1:exon:16660;Parent=Msa1118800-mRNA-1
chr7_3 exon 67579097 67579163 67579097 ID=Msa1118800-mRNA-1:exon:16659;Parent=Msa1118800-mRNA-1
chr7_3 exon 67579448 67579550 67579448 ID=Msa1118800-mRNA-1:exon:16658;Parent=Msa1118800-mRNA-1
chr7_3 five_prime_UTR 67579448 67579550 67579448 ID=Msa1118800-mRNA-1:five_prime_utr;Parent=Msa1118800-mRNA-1
chr7_3 five_prime_UTR 67579097 67579163 67579097 ID=Msa1118800-mRNA-1:five_prime_utr;Parent=Msa1118800-mRNA-1
chr7_3 five_prime_UTR 67576369 67576393 67576369 ID=Msa1118800-mRNA-1:five_prime_utr;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67576261 67576368 67576261 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67576032 67576145 67576032 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67575522 67575743 67575522 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67575286 67575360 67575286 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67575064 67575180 67575064 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67574728 67574978 67574728 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67574523 67574598 67574523 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67574346 67574432 67574346 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 CDS 67573869 67574054 67573869 ID=Msa1118800-mRNA-1:cds;Parent=Msa1118800-mRNA-1
chr7_3 three_prime_UTR 67573590 67573868 67573590 ID=Msa1118800-mRNA-1:three_prime_utr;Parent=Msa1118800-mRNA-1
Gene Sequence

>Msa1118800

ATGAATGCACTAGCAGCTACAAACAGGAATTTTAAGTTGGCTTCTAGGCTTTTGGGATTGGATTCCAAGCTTGAGAAAAGTTTACTCATTCCATTTAGGGAAATCAAGGTTGAATGTACCATTCCAAAAGATGACGGCACGTTGCAATCTTATATTGGATTCAGAGTTCAACATGATAATGCTAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGATCCAGATGAAGTGAATGCTTTAGCGCAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTAACCCTTCAGAATTAAGTATATCTGAGTTAGAAAGACTTACCAGAGTTTTTACTCAGAAAATTCATGATCTAATTGGAACTCACATGGATGTTCCTGCACCTGATATGGGAACAGGACCACAGACCATGGCATGGATACTAGATGAATATTCCAAATTTCACGGCTACTCGCCTGCAGTGGTGACTGGAAAACCTATAGATCTTGGTGGATCTTTAGGTAGAGACGCAGCTACAGGAAGAGGAGTTATGTTTGCAGCCGAGGCTTTGCTTAATGAGTATGGGAAGAGTATATCTGGACAACGGTTCGTCATTCAGGGTTTTGGAAATGTAGGGTCTTGGGCTGCACAATTAATTGATGAGAAAGGCGGAAAAATTGTTGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAAAGGTCTTGACATCCCTAGCCTACTCAAGCATACCAAAGAGCACAAGGGAGTAAAAGGATTCCATGGTGGTGATTCATTTGATTCTAACTCAATATTGCTTGAAGATTGTGATGTTCTAATCCCAGCAGCTCTTGGAGGTGTCATCAATAGGGAAAATGCAAATGAAATTAAGGCAAAATTTATTGTTGAAGCAGCTAATCACCCAACTGACCCTGATGCTGATGAGATTCTAAAGAAAAAAGGTGTTGTGATTCTCCCAGACATTTATGCAAATTCAGGAGGTGTTACAGTTAGCTACTTTGAGTGGGTTCAGAACATCCAAGGGTTTATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAAAACTACATGAACAGGGGTTTCAAAGATGTGAAAGACATGTGCAAAACTCATGAATGTGATCTTCGAATGGGAGCTTTCAGTTTGGGAGTTAACCGTGTGGCAAGGGCTACTGTCCTTAGAGGTTGGGAAGCTTGA

Protein sequence

>Msa1118800

MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPSELSISELERLTRVFTQKIHDLIGTHMDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVMFAAEALLNEYGKSISGQRFVIQGFGNVGSWAAQLIDEKGGKIVAVSDITGAIKNSKGLDIPSLLKHTKEHKGVKGFHGGDSFDSNSILLEDCDVLIPAALGGVINRENANEIKAKFIVEAANHPTDPDADEILKKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKNYMNRGFKDVKDMCKTHECDLRMGAFSLGVNRVARATVLRGWEA*