AlfalfaGEDB | Msa1119440

M. sativa cultivar zhongmu-4 / Msa1119440

KEGG: K08235
GO: GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944
PFAM: PF00722.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119440	XP_003624548.1	87.413	143	15	1	36	175	151	293	4.99e-84	259
Msa1119440	XP_003624548.1	95.918	49	2	0	1	49	1	49	4.17e-23	103

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119440	sp\|Q39857\|XTH1_SOYBN	82.639	144	21	2	36	175	153	296	9.93e-81	244
Msa1119440	sp\|Q39857\|XTH1_SOYBN	77.083	48	11	0	2	49	4	51	8.68e-12	65.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119440	A0A6A6LJX5	63.014	219	37	1	1	175	1	219	2.68e-92	277

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa1119440	0.827763	1.307138e-54	-8.615850e-47
Msa0045810	Msa1119440	0.817338	3.473066e-52	-8.615850e-47
Msa0092220	Msa1119440	0.826606	2.473333e-54	-8.615850e-47
Msa0124910	Msa1119440	0.801071	1.070279e-48	-8.615850e-47
Msa0139500	Msa1119440	0.820972	5.171950e-53	-8.615850e-47
Msa0143590	Msa1119440	0.811679	6.206781e-51	-8.615850e-47
Msa0177320	Msa1119440	0.830698	2.536683e-55	-8.615850e-47
Msa0195230	Msa1119440	0.821696	3.519771e-53	-8.615850e-47
Msa0195260	Msa1119440	0.821128	4.759007e-53	-8.615850e-47
Msa0256540	Msa1119440	0.801166	1.023759e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119440	MtrunA17_Chr7g0252621	87.413	143	15	1	36	175	151	293	4.59e-88	259
Msa1119440	MtrunA17_Chr7g0252621	95.918	49	2	0	1	49	1	49	3.83e-27	103
Msa1119440	MtrunA17_Chr7g0252631	86.713	143	16	1	36	175	151	293	1.21e-87	258
Msa1119440	MtrunA17_Chr7g0252631	93.878	49	3	0	1	49	1	49	3.27e-26	101
Msa1119440	MtrunA17_Chr7g0252601	75.524	143	32	1	36	175	151	293	1.56e-79	238
Msa1119440	MtrunA17_Chr7g0252601	72.000	50	14	0	1	50	1	50	2.09e-17	77.4
Msa1119440	MtrunA17_Chr6g0461731	77.622	143	29	1	36	175	174	316	3.78e-78	235
Msa1119440	MtrunA17_Chr6g0461731	63.265	49	18	0	1	49	24	72	1.62e-15	72.8
Msa1119440	MtrunA17_Chr6g0461761	76.224	143	31	1	36	175	151	293	2.53e-77	232
Msa1119440	MtrunA17_Chr6g0461761	59.184	49	20	0	1	49	1	49	4.21e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119440	AT5G13870.2	71.034	145	39	1	34	175	149	293	2.21e-74	225
Msa1119440	AT5G13870.2	60.465	43	17	0	7	49	7	49	7.60e-13	65.5
Msa1119440	AT5G13870.1	71.034	145	39	1	34	175	149	293	2.21e-74	225
Msa1119440	AT5G13870.1	60.465	43	17	0	7	49	7	49	7.60e-13	65.5
Msa1119440	AT5G13870.3	71.034	145	39	1	34	175	149	293	2.21e-74	225
Msa1119440	AT5G13870.3	60.465	43	17	0	7	49	7	49	7.60e-13	65.5
Msa1119440	AT2G06850.2	70.139	144	40	1	34	174	92	235	6.14e-73	219
Msa1119440	AT2G06850.1	70.139	144	40	1	34	174	152	295	9.31e-73	221
Msa1119440	AT3G23730.1	50.340	147	66	3	34	173	144	290	2.20e-41	140
Msa1119440	AT5G65730.1	45.714	140	72	2	34	170	153	291	1.74e-39	135

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Find 45 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTGTATATCTTCAT+TGG	0.377706	7_3:+68335062	None:intergenic
AACACAGGGTAAAAGATGGT+GGG	0.641505	7_3:-68334907	Msa1119440:CDS
AAGCCAGTGGATGTACCATT+TGG	0.479457	7_3:-68335986	Msa1119440:CDS
ACAAAATGAATTCTTCATTT+TGG	0.155254	7_3:-68336066	None:intergenic
ACAGAACTTTGCATTAACAG+AGG	0.661986	7_3:+68334932	None:intergenic
ACATCCACTGGCTTACGTGG+GGG	0.655353	7_3:+68335995	None:intergenic
AGGATTCACAACCATCAATG+TGG	0.698159	7_3:+68334952	None:intergenic
ATATGATCAAAAGCCCAAGT+GGG	0.644752	7_3:+68335950	None:intergenic
ATCAGTGCAATAGTTGTAAA+TGG	0.324527	7_3:+68334815	None:intergenic
ATCTTCATTGGTTGGTCAAA+TGG	0.328683	7_3:+68335074	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATCAAATACTTCAATGG+TGG	-	chr7_3:68334890-68334909	Msa1119440:CDS	30.0%
TGTACTTATCAAGATGAAGT+TGG	+	chr7_3:68334925-68334944	None:intergenic	30.0%
TTACAAACAAATGTGTTCAC+TGG	-	chr7_3:68335442-68335461	Msa1119440:intron	30.0%
AAGAACAAAGGATCTTTCTT+TGG	-	chr7_3:68335479-68335498	Msa1119440:intron	30.0%
TGTTGTATATCTTCATTGGT+TGG	+	chr7_3:68335759-68335778	None:intergenic	30.0%
TTTATGGAATGCAGATGATT+GGG	-	chr7_3:68335780-68335799	Msa1119440:intron	30.0%
ATCAGTGCAATAGTTGTAAA+TGG	+	chr7_3:68336010-68336029	None:intergenic	30.0%
CATATCAAATACTTCAATGG+TGG	-	chr7_3:68334890-68334909	Msa1119440:CDS	30.0%
TGTACTTATCAAGATGAAGT+TGG	+	chr7_3:68334925-68334944	None:intergenic	30.0%
TTACAAACAAATGTGTTCAC+TGG	-	chr7_3:68335442-68335461	Msa1119440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	68334761	68336083	68334761	ID=Msa1119440;Name=Msa1119440
chr7_3	mRNA	68334761	68336083	68334761	ID=Msa1119440-mRNA-1;Parent=Msa1119440;Name=Msa1119440-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|1\|0\|0\|3\|0\|175
chr7_3	exon	68335936	68336083	68335936	ID=Msa1119440-mRNA-1:exon:17151;Parent=Msa1119440-mRNA-1
chr7_3	exon	68335154	68335160	68335154	ID=Msa1119440-mRNA-1:exon:17150;Parent=Msa1119440-mRNA-1
chr7_3	exon	68334761	68335133	68334761	ID=Msa1119440-mRNA-1:exon:17149;Parent=Msa1119440-mRNA-1
chr7_3	CDS	68335936	68336083	68335936	ID=Msa1119440-mRNA-1:cds;Parent=Msa1119440-mRNA-1
chr7_3	CDS	68335154	68335160	68335154	ID=Msa1119440-mRNA-1:cds;Parent=Msa1119440-mRNA-1
chr7_3	CDS	68334761	68335133	68334761	ID=Msa1119440-mRNA-1:cds;Parent=Msa1119440-mRNA-1

Gene Sequence

>Msa1119440

ATGAATTCTTCATTTTGGACTCTATGTTTGATTTTAGCATCACTAGTCTCTTTTTCATTATGTGCTCCCCCACGTAAGCCAGTGGATGTACCATTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGATTTTTTAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAGATATACAACAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCAAAGTTCTGTGCAACACAGGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAGAAATACACCATTTACAACTATTGCACTGATAGAAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA

Protein sequence

>Msa1119440

MNSSFWTLCLILASLVSFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNDFLVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI*