Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120090 | XP_003624460.1 | 93.885 | 278 | 14 | 2 | 12 | 288 | 13 | 288 | 2.69e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120090 | sp|Q9LYV6|GEML5_ARATH | 60.714 | 252 | 83 | 3 | 27 | 277 | 27 | 263 | 2.21e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120090 | G7KW78 | 93.885 | 278 | 14 | 2 | 12 | 288 | 13 | 288 | 1.29e-180 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029020 | Msa1120090 | 0.802584 | 5.235343e-49 | -8.615850e-47 |
| Msa0076650 | Msa1120090 | 0.801755 | 7.751605e-49 | -8.615850e-47 |
| Msa0090040 | Msa1120090 | 0.802812 | 4.697338e-49 | -8.615850e-47 |
| Msa0629980 | Msa1120090 | -0.806498 | 7.990789e-50 | -8.615850e-47 |
| Msa0168900 | Msa1120090 | -0.807937 | 3.960625e-50 | -8.615850e-47 |
| Msa1069770 | Msa1120090 | 0.873687 | 1.212588e-67 | -8.615850e-47 |
| Msa1120090 | Msa1300930 | 0.834124 | 3.592169e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120090 | MtrunA17_Chr7g0251801 | 93.885 | 278 | 14 | 2 | 12 | 288 | 13 | 288 | 0.0 | 508 |
| Msa1120090 | MtrunA17_Chr3g0133221 | 47.475 | 198 | 94 | 3 | 86 | 274 | 59 | 255 | 6.97e-61 | 194 |
| Msa1120090 | MtrunA17_Chr8g0367701 | 48.125 | 160 | 82 | 1 | 115 | 274 | 109 | 267 | 9.18e-53 | 173 |
| Msa1120090 | MtrunA17_Chr2g0315771 | 41.951 | 205 | 104 | 4 | 87 | 277 | 25 | 228 | 3.27e-48 | 160 |
| Msa1120090 | MtrunA17_Chr6g0481891 | 39.394 | 198 | 111 | 2 | 79 | 275 | 8 | 197 | 1.77e-45 | 152 |
| Msa1120090 | MtrunA17_Chr1g0162171 | 38.857 | 175 | 107 | 0 | 102 | 276 | 48 | 222 | 3.77e-45 | 152 |
| Msa1120090 | MtrunA17_Chr1g0212091 | 38.547 | 179 | 110 | 0 | 96 | 274 | 40 | 218 | 1.51e-44 | 150 |
| Msa1120090 | MtrunA17_Chr8g0388871 | 41.975 | 162 | 93 | 1 | 115 | 275 | 22 | 183 | 3.24e-41 | 140 |
| Msa1120090 | MtrunA17_Chr1g0212171 | 35.758 | 165 | 106 | 0 | 112 | 276 | 56 | 220 | 3.40e-37 | 131 |
| Msa1120090 | MtrunA17_Chr1g0212181 | 36.810 | 163 | 103 | 0 | 114 | 276 | 55 | 217 | 3.90e-36 | 129 |
| Msa1120090 | MtrunA17_Chr1g0212121 | 37.423 | 163 | 102 | 0 | 114 | 276 | 55 | 217 | 3.69e-35 | 126 |
| Msa1120090 | MtrunA17_Chr1g0212111 | 50.926 | 108 | 53 | 0 | 169 | 276 | 49 | 156 | 2.43e-28 | 107 |
| Msa1120090 | MtrunA17_Chr1g0212131 | 46.552 | 58 | 31 | 0 | 219 | 276 | 6 | 63 | 4.26e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120090 | AT5G13200.1 | 60.714 | 252 | 83 | 3 | 27 | 277 | 27 | 263 | 2.24e-108 | 315 |
| Msa1120090 | AT5G13200.2 | 60.204 | 196 | 62 | 3 | 27 | 221 | 27 | 207 | 3.13e-78 | 236 |
| Msa1120090 | AT2G22475.1 | 44.670 | 197 | 98 | 3 | 88 | 274 | 96 | 291 | 6.01e-59 | 190 |
| Msa1120090 | AT1G28200.1 | 46.429 | 196 | 94 | 3 | 86 | 274 | 63 | 254 | 1.08e-58 | 188 |
| Msa1120090 | AT1G28200.2 | 46.429 | 196 | 94 | 3 | 86 | 274 | 63 | 254 | 1.08e-58 | 188 |
| Msa1120090 | AT5G23370.1 | 41.875 | 160 | 93 | 0 | 116 | 275 | 55 | 214 | 3.16e-43 | 147 |
| Msa1120090 | AT5G08350.1 | 39.326 | 178 | 103 | 1 | 98 | 275 | 41 | 213 | 4.84e-43 | 147 |
| Msa1120090 | AT5G23360.1 | 41.615 | 161 | 94 | 0 | 116 | 276 | 47 | 207 | 8.48e-43 | 146 |
| Msa1120090 | AT5G23350.1 | 41.615 | 161 | 94 | 0 | 116 | 276 | 55 | 215 | 2.40e-42 | 145 |
| Msa1120090 | AT4G01600.1 | 34.906 | 212 | 129 | 3 | 72 | 274 | 13 | 224 | 6.07e-38 | 134 |
| Msa1120090 | AT2G22475.2 | 43.537 | 147 | 72 | 3 | 88 | 224 | 96 | 241 | 7.10e-38 | 134 |
| Msa1120090 | AT4G40100.1 | 36.364 | 198 | 79 | 5 | 88 | 274 | 55 | 216 | 9.10e-38 | 133 |
| Msa1120090 | AT4G01600.2 | 33.816 | 207 | 133 | 3 | 72 | 274 | 13 | 219 | 7.34e-36 | 129 |
| Msa1120090 | AT4G01600.3 | 39.130 | 161 | 97 | 1 | 115 | 274 | 25 | 185 | 9.70e-36 | 127 |
Find 85 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATATGTTTGATTCT+TGG | 0.179773 | 7_3:+69281814 | Msa1120090:CDS |
| CATCAGGTGATGATTGGTTT+TGG | 0.254420 | 7_3:-69281518 | None:intergenic |
| ACGATTGTGCCAGATGTTAT+TGG | 0.273073 | 7_3:-69281859 | None:intergenic |
| CTGTGATTTGCAGTTAAAAC+AGG | 0.342749 | 7_3:+69282678 | Msa1120090:intron |
| GGTGGTGCTGGTGATGCAAA+TGG | 0.353423 | 7_3:-69281546 | None:intergenic |
| CAAACACATTCCAAGAGAAA+TGG | 0.360284 | 7_3:-69283945 | None:intergenic |
| TTCATTGTCTTCAGCTGCAA+TGG | 0.365963 | 7_3:+69282704 | Msa1120090:CDS |
| ATCATGCAACAACTGAGAAC+TGG | 0.379902 | 7_3:+69281604 | Msa1120090:CDS |
| TGTTACCTTTCAACAACAAC+AGG | 0.385011 | 7_3:+69282834 | Msa1120090:CDS |
| GATGATGGTGGTGGTGGTGC+TGG | 0.389255 | 7_3:-69281558 | None:intergenic |
| TTGTTGTCTGGATGACTACT+TGG | 0.395182 | 7_3:-69281657 | None:intergenic |
| ACAGAAAAGGTTGGATTTGA+AGG | 0.398671 | 7_3:-69281389 | None:intergenic |
| AAACACATTCCAAGAGAAAT+GGG | 0.404925 | 7_3:-69283944 | None:intergenic |
| CACCCTCCGGCCAAGTGACT+TGG | 0.405041 | 7_3:+69282931 | Msa1120090:CDS |
| TCATTGTCTTCAGCTGCAAT+GGG | 0.409086 | 7_3:+69282705 | Msa1120090:CDS |
| GCCCGTCAACTGTCACAATC+TGG | 0.413594 | 7_3:-69283791 | None:intergenic |
| ACAACAACAGGGCCTGTTGC+AGG | 0.417937 | 7_3:+69282846 | Msa1120090:CDS |
| ATGGTGCCTTTAGCGAAGAT+TGG | 0.428167 | 7_3:+69283720 | Msa1120090:CDS |
| AAGTAAAGGGTTCCTGCAAC+AGG | 0.429659 | 7_3:-69282858 | None:intergenic |
| ATGAATATCTGATAAGTAAA+GGG | 0.435046 | 7_3:-69282871 | None:intergenic |
| ACTGTTCCAATCTTCGCTAA+AGG | 0.459341 | 7_3:-69283726 | None:intergenic |
| TCTGTATCATTTCTTCCTCT+AGG | 0.462645 | 7_3:+69284099 | Msa1120090:three_prime_UTR |
| AGGAGACAAGACACTGTTGT+TGG | 0.472192 | 7_3:-69281337 | None:intergenic |
| TGTTCATGTTTGTATGTAAG+AGG | 0.483355 | 7_3:-69281479 | None:intergenic |
| TTACAAACTGCTTCTGCTGA+TGG | 0.483740 | 7_3:+69281690 | Msa1120090:CDS |
| GATGAATATCTGATAAGTAA+AGG | 0.486525 | 7_3:-69282872 | None:intergenic |
| GCACGTATGGATGATCTTGC+TGG | 0.491754 | 7_3:-69281746 | None:intergenic |
| GTGGTGCTGGTGATGCAAAT+GGG | 0.493613 | 7_3:-69281545 | None:intergenic |
| ATCCAGATTGTGACAGTTGA+CGG | 0.497932 | 7_3:+69283789 | Msa1120090:CDS |
| GATGATGATGATGGTGGTGG+TGG | 0.508339 | 7_3:-69281564 | None:intergenic |
| TCATGCAACAACTGAGAACT+GGG | 0.509838 | 7_3:+69281605 | Msa1120090:CDS |
| CAAGGTTGAATGAATTATGT+AGG | 0.510555 | 7_3:-69281414 | None:intergenic |
| TAAGCCTAGCAGTAGTCCTA+TGG | 0.515052 | 7_3:+69281785 | Msa1120090:CDS |
| AAGCTACCGCCAATAACATC+TGG | 0.518887 | 7_3:+69281850 | Msa1120090:CDS |
| GGATGACTACTTGGTACAGC+TGG | 0.522699 | 7_3:-69281648 | None:intergenic |
| CTCCAAGTCACTTGGCCGGA+GGG | 0.523356 | 7_3:-69282933 | None:intergenic |
| CTACTGCTAGGCTTATCAAC+AGG | 0.523543 | 7_3:-69281777 | None:intergenic |
| GAACTGGGGAACACATATGA+TGG | 0.527532 | 7_3:+69281620 | Msa1120090:CDS |
| TGATTCTCCCTCATGATCAC+AGG | 0.530214 | 7_3:-69283753 | None:intergenic |
| TCCAGATTGTGACAGTTGAC+GGG | 0.531799 | 7_3:+69283790 | Msa1120090:CDS |
| TTGAGTTTCACTGCACCCTC+CGG | 0.532381 | 7_3:+69282918 | Msa1120090:CDS |
| ATGTAGGAAACAGAAAAGGT+TGG | 0.534608 | 7_3:-69281398 | None:intergenic |
| ACAGGACTGTGTTGCACGTA+TGG | 0.537458 | 7_3:-69281759 | None:intergenic |
| GAGGGTGCAGTGAAACTCAA+AGG | 0.539333 | 7_3:-69282915 | None:intergenic |
| TCAGTTGTTGCATGATTCTG+TGG | 0.539677 | 7_3:-69281597 | None:intergenic |
| CAGAAAAGGTTGGATTTGAA+GGG | 0.546651 | 7_3:-69281388 | None:intergenic |
| CAGGCCCTGTTGTTGTTGAA+AGG | 0.548045 | 7_3:-69282839 | None:intergenic |
| GACTAACTAGTTCTTCAAGC+TGG | 0.556433 | 7_3:+69283914 | Msa1120090:exon |
| CAGTTAATCCTGTGATCATG+AGG | 0.557822 | 7_3:+69283745 | Msa1120090:CDS |
| ATTGCAGCTGAAGACAATGA+AGG | 0.560885 | 7_3:-69282702 | None:intergenic |
| ACAAGGACAACCTCAGCCTC+AGG | 0.564940 | 7_3:+69281713 | Msa1120090:CDS |
| AGGGTGCAGTGAAACTCAAA+GGG | 0.565964 | 7_3:-69282914 | None:intergenic |
| TTGAAGAACTAGTTAGTCGT+TGG | 0.566224 | 7_3:-69283909 | None:intergenic |
| AATTATGTAGGAAACAGAAA+AGG | 0.567676 | 7_3:-69281402 | None:intergenic |
| AGTCGTTGGTACGGCTACGC+CGG | 0.571636 | 7_3:-69283895 | None:intergenic |
| GTGATGAGAGATTCAGAACA+AGG | 0.575104 | 7_3:-69281432 | None:intergenic |
| GTAGCTCCAAGTCACTTGGC+CGG | 0.578164 | 7_3:-69282937 | None:intergenic |
| GAACTAGTTAGTCGTTGGTA+CGG | 0.588752 | 7_3:-69283904 | None:intergenic |
| TGTAGTAGCTCCAAGTCACT+TGG | 0.593028 | 7_3:-69282941 | None:intergenic |
| ACTGCTTCTGCTGATGGACA+AGG | 0.594269 | 7_3:+69281696 | Msa1120090:CDS |
| ATTGTGCCAGATGTTATTGG+CGG | 0.596019 | 7_3:-69281856 | None:intergenic |
| GTTGTTGCATGATTCTGTGG+TGG | 0.600877 | 7_3:-69281594 | None:intergenic |
| ATATGAAGAATTGATTCCAT+AGG | 0.605924 | 7_3:-69281801 | None:intergenic |
| TAGTAATGAACCTGAGGCTG+AGG | 0.610263 | 7_3:-69281723 | None:intergenic |
| GATTCCATAGGACTACTGCT+AGG | 0.615191 | 7_3:-69281789 | None:intergenic |
| TAAAGCAGTAAAGAACCTAT+CGG | 0.619248 | 7_3:+69283848 | Msa1120090:CDS |
| AACTGGGGAACACATATGAT+GGG | 0.620571 | 7_3:+69281621 | Msa1120090:CDS |
| GGAACAGATGATGATGATGA+TGG | 0.625856 | 7_3:-69281573 | None:intergenic |
| GCAGTAAAGAACCTATCGGA+AGG | 0.626352 | 7_3:+69283852 | Msa1120090:CDS |
| AGTGACTTGGAGCTACTACA+AGG | 0.629250 | 7_3:+69282944 | Msa1120090:CDS |
| GTTAAGCAAAGAAGCATAGT+CGG | 0.633624 | 7_3:+69281288 | Msa1120090:five_prime_UTR |
| GACTGTAAAAGCGATATCAG+AGG | 0.638142 | 7_3:+69282740 | Msa1120090:CDS |
| AATGTGAGATGCCTTCCGAT+AGG | 0.639873 | 7_3:-69283863 | None:intergenic |
| GCAAAGAAGCATAGTCGGTG+TGG | 0.644231 | 7_3:+69281293 | Msa1120090:five_prime_UTR |
| ACTGTAAAAGCGATATCAGA+GGG | 0.644668 | 7_3:+69282741 | Msa1120090:CDS |
| TGCTGGTAGTAATGAACCTG+AGG | 0.645046 | 7_3:-69281729 | None:intergenic |
| AAAATTGCAATAACACCTAG+AGG | 0.652163 | 7_3:-69284114 | None:intergenic |
| GTTACCTTTCAACAACAACA+GGG | 0.667635 | 7_3:+69282835 | Msa1120090:CDS |
| ACATATATCAATATTAACTG+TGG | 0.669725 | 7_3:-69284076 | None:intergenic |
| AGTTAATCCTGTGATCATGA+GGG | 0.672652 | 7_3:+69283746 | Msa1120090:CDS |
| TGTGATTTGCAGTTAAAACA+GGG | 0.680349 | 7_3:+69282679 | Msa1120090:intron |
| CATTGTCTTCAGCTGCAATG+GGG | 0.684360 | 7_3:+69282706 | Msa1120090:CDS |
| AACACATTCCAAGAGAAATG+GGG | 0.695630 | 7_3:-69283943 | None:intergenic |
| GTAAAAGCGATATCAGAGGG+TGG | 0.696098 | 7_3:+69282744 | Msa1120090:CDS |
| CATGCAACAACTGAGAACTG+GGG | 0.729327 | 7_3:+69281606 | Msa1120090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAATTGAATTTTATG+AGG | + | chr7_3:69282089-69282108 | Msa1120090:intron | 10.0% |
| !!! | ATAAAATATGAAAATAGTTT+TGG | - | chr7_3:69282389-69282408 | None:intergenic | 10.0% |
| !!! | TGTATTTATGTTTTATATTA+TGG | - | chr7_3:69283586-69283605 | None:intergenic | 10.0% |
| !!! | TTTCATATTTTATACTAAGT+TGG | + | chr7_3:69282396-69282415 | Msa1120090:intron | 15.0% |
| !!! | AATTTTTATTAAAATTGTGG+TGG | - | chr7_3:69282554-69282573 | None:intergenic | 15.0% |
| !! | CTGTTCATAAATATAATAAA+CGG | - | chr7_3:69282974-69282993 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATAGTTTA+AGG | - | chr7_3:69283648-69283667 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTTGTTTGAAA+GGG | + | chr7_3:69283974-69283993 | Msa1120090:three_prime_UTR | 15.0% |
| !!! | TTGATTATGTAAATTTTGTA+GGG | + | chr7_3:69284029-69284048 | Msa1120090:three_prime_UTR | 15.0% |
| !! | ATCAATCTATCTAAATATAG+AGG | - | chr7_3:69281907-69281926 | None:intergenic | 20.0% |
| !!! | TATATATCTATGAGAGTTTT+TGG | + | chr7_3:69282467-69282486 | Msa1120090:intron | 20.0% |
| !!! | ATATATCTATGAGAGTTTTT+GGG | + | chr7_3:69282468-69282487 | Msa1120090:intron | 20.0% |
| !! | ATGAATATCTGATAAGTAAA+GGG | - | chr7_3:69282874-69282893 | None:intergenic | 20.0% |
| !!! | TTTTATGCTAATAATATTGC+TGG | - | chr7_3:69283317-69283336 | None:intergenic | 20.0% |
| !! | AAAATTTCTATTACACCTTT+CGG | + | chr7_3:69283615-69283634 | Msa1120090:intron | 20.0% |
| !! | ATTGAAATGAATGTTTGATA+TGG | + | chr7_3:69283660-69283679 | Msa1120090:intron | 20.0% |
| !!! | GTTTTAATTTCTTGTTTGAA+AGG | + | chr7_3:69283973-69283992 | Msa1120090:three_prime_UTR | 20.0% |
| !!! | GTTGATTATGTAAATTTTGT+AGG | + | chr7_3:69284028-69284047 | Msa1120090:three_prime_UTR | 20.0% |
| !! | ACATATATCAATATTAACTG+TGG | - | chr7_3:69284079-69284098 | None:intergenic | 20.0% |
| !!! | TAACATGTTACGTGTTTTTA+AGG | - | chr7_3:69281360-69281379 | None:intergenic | 25.0% |
| ! | AATTATGTAGGAAACAGAAA+AGG | - | chr7_3:69281405-69281424 | None:intergenic | 25.0% |
| !! | ATATGAAGAATTGATTCCAT+AGG | - | chr7_3:69281804-69281823 | None:intergenic | 25.0% |
| ! | TTCTTCATATGTTTGATTCT+TGG | + | chr7_3:69281814-69281833 | Msa1120090:CDS | 25.0% |
| !! | TTAAGTTTGTTTATCCAGAT+AGG | + | chr7_3:69282202-69282221 | Msa1120090:intron | 25.0% |
| ! | ACTCTCATAGATATATAGTA+AGG | - | chr7_3:69282464-69282483 | None:intergenic | 25.0% |
| ! | GATGAATATCTGATAAGTAA+AGG | - | chr7_3:69282875-69282894 | None:intergenic | 25.0% |
| !!! | CTATTGAACAAATTTTGACA+AGG | - | chr7_3:69282998-69283017 | None:intergenic | 25.0% |
| !!! | TACAATAGTCAATTTGTTGT+TGG | + | chr7_3:69283196-69283215 | Msa1120090:intron | 25.0% |
| !! | TCATTTTCTAACTTCAAAAC+TGG | + | chr7_3:69283267-69283286 | Msa1120090:intron | 25.0% |
| ! | TAATCCACTCAAGTAATTTA+CGG | - | chr7_3:69283428-69283447 | None:intergenic | 25.0% |
| !!! | TAAATTACTTGAGTGGATTA+GGG | + | chr7_3:69283428-69283447 | Msa1120090:intron | 25.0% |
| !!! | GACTTGTTATATTGTGTAAT+AGG | + | chr7_3:69283695-69283714 | Msa1120090:intron | 25.0% |
| ! | TTATATTGTGTAATAGGTGA+TGG | + | chr7_3:69283701-69283720 | Msa1120090:intron | 25.0% |
| CAAGGTTGAATGAATTATGT+AGG | - | chr7_3:69281417-69281436 | None:intergenic | 30.0% | |
| TGTTCATGTTTGTATGTAAG+AGG | - | chr7_3:69281482-69281501 | None:intergenic | 30.0% | |
| TTATGAGATGCTAGACTATT+AGG | - | chr7_3:69282230-69282249 | None:intergenic | 30.0% | |
| TAGTCTAGCATCTCATAATT+TGG | + | chr7_3:69282232-69282251 | Msa1120090:intron | 30.0% | |
| AGATATATAGTAAGGAGCTT+AGG | - | chr7_3:69282456-69282475 | None:intergenic | 30.0% | |
| ! | CAAAGTTCTGATAATATCCA+CGG | - | chr7_3:69282520-69282539 | None:intergenic | 30.0% |
| ! | TGTGATTTGCAGTTAAAACA+GGG | + | chr7_3:69282679-69282698 | Msa1120090:intron | 30.0% |
| ! | TTTGTTCAATAGAGCATTAG+AGG | + | chr7_3:69283006-69283025 | Msa1120090:intron | 30.0% |
| ! | TTGTTCAATAGAGCATTAGA+GGG | + | chr7_3:69283007-69283026 | Msa1120090:intron | 30.0% |
| !! | TATATCGAGCATTGATAAGT+AGG | + | chr7_3:69283055-69283074 | Msa1120090:intron | 30.0% |
| ! | TTGTTGTTGGTAGACATAAT+TGG | + | chr7_3:69283209-69283228 | Msa1120090:intron | 30.0% |
| AAAATGAACACATGAGAGAA+CGG | - | chr7_3:69283254-69283273 | None:intergenic | 30.0% | |
| ! | GTAAATTACTTGAGTGGATT+AGG | + | chr7_3:69283427-69283446 | Msa1120090:intron | 30.0% |
| ACGTCATATATGTAGTACTA+CGG | + | chr7_3:69283464-69283483 | Msa1120090:intron | 30.0% | |
| TCACATATTGACACAAAAGA+GGG | - | chr7_3:69283545-69283564 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGAACCTAT+CGG | + | chr7_3:69283848-69283867 | Msa1120090:CDS | 30.0% | |
| AAACACATTCCAAGAGAAAT+GGG | - | chr7_3:69283947-69283966 | None:intergenic | 30.0% | |
| AAAATTGCAATAACACCTAG+AGG | - | chr7_3:69284117-69284136 | None:intergenic | 30.0% | |
| ! | GTTAAGCAAAGAAGCATAGT+CGG | + | chr7_3:69281288-69281307 | Msa1120090:five_prime_UTR | 35.0% |
| CAGAAAAGGTTGGATTTGAA+GGG | - | chr7_3:69281391-69281410 | None:intergenic | 35.0% | |
| ACAGAAAAGGTTGGATTTGA+AGG | - | chr7_3:69281392-69281411 | None:intergenic | 35.0% | |
| ATGTAGGAAACAGAAAAGGT+TGG | - | chr7_3:69281401-69281420 | None:intergenic | 35.0% | |
| !!! | AAAGCTGCTTTTTTGTTGTC+TGG | - | chr7_3:69281672-69281691 | None:intergenic | 35.0% |
| ! | AATCCTTCTAGAAGTAAGGA+GGG | - | chr7_3:69281950-69281969 | None:intergenic | 35.0% |
| ! | AGTCAATCCTTCTAGAAGTA+AGG | - | chr7_3:69281954-69281973 | None:intergenic | 35.0% |
| CTTACTTTCATAAGCTCTCT+AGG | + | chr7_3:69282044-69282063 | Msa1120090:intron | 35.0% | |
| !! | TTTCATAAGCTCTCTAGGAT+AGG | + | chr7_3:69282049-69282068 | Msa1120090:intron | 35.0% |
| TAGACTATTAGGTTCCTATC+TGG | - | chr7_3:69282219-69282238 | None:intergenic | 35.0% | |
| TTTGCCTAACATACACATGA+AGG | + | chr7_3:69282614-69282633 | Msa1120090:intron | 35.0% | |
| TTGCCTAACATACACATGAA+GGG | + | chr7_3:69282615-69282634 | Msa1120090:intron | 35.0% | |
| ! | CTGTGATTTGCAGTTAAAAC+AGG | + | chr7_3:69282678-69282697 | Msa1120090:intron | 35.0% |
| ACTGTAAAAGCGATATCAGA+GGG | + | chr7_3:69282741-69282760 | Msa1120090:CDS | 35.0% | |
| !!! | GTCTTTTTCAGCTTCTCATT+TGG | - | chr7_3:69282807-69282826 | None:intergenic | 35.0% |
| TGTTACCTTTCAACAACAAC+AGG | + | chr7_3:69282834-69282853 | Msa1120090:CDS | 35.0% | |
| GTTACCTTTCAACAACAACA+GGG | + | chr7_3:69282835-69282854 | Msa1120090:CDS | 35.0% | |
| TAGACATAATTGGCCGAATT+CGG | + | chr7_3:69283219-69283238 | Msa1120090:intron | 35.0% | |
| AAATGAACACATGAGAGAAC+GGG | - | chr7_3:69283253-69283272 | None:intergenic | 35.0% | |
| GATCGTTTGTTTACGCAATT+CGG | + | chr7_3:69283361-69283380 | Msa1120090:intron | 35.0% | |
| AGTTCCGTAAATTACTTGAG+TGG | + | chr7_3:69283421-69283440 | Msa1120090:intron | 35.0% | |
| AAGCTGGTATTGTTGTAATC+TGG | - | chr7_3:69283491-69283510 | None:intergenic | 35.0% | |
| CTCACATATTGACACAAAAG+AGG | - | chr7_3:69283546-69283565 | None:intergenic | 35.0% | |
| AGTTAATCCTGTGATCATGA+GGG | + | chr7_3:69283746-69283765 | Msa1120090:CDS | 35.0% | |
| TTGAAGAACTAGTTAGTCGT+TGG | - | chr7_3:69283912-69283931 | None:intergenic | 35.0% | |
| AACACATTCCAAGAGAAATG+GGG | - | chr7_3:69283946-69283965 | None:intergenic | 35.0% | |
| CAAACACATTCCAAGAGAAA+TGG | - | chr7_3:69283948-69283967 | None:intergenic | 35.0% | |
| TCTGTATCATTTCTTCCTCT+AGG | + | chr7_3:69284099-69284118 | Msa1120090:three_prime_UTR | 35.0% | |
| GTGATGAGAGATTCAGAACA+AGG | - | chr7_3:69281435-69281454 | None:intergenic | 40.0% | |
| !!! | CATCAGGTGATGATTGGTTT+TGG | - | chr7_3:69281521-69281540 | None:intergenic | 40.0% |
| ! | GGTTTTCATCAGGTGATGAT+TGG | - | chr7_3:69281527-69281546 | None:intergenic | 40.0% |
| !! | GATGCAAATGGGTTTTCATC+AGG | - | chr7_3:69281537-69281556 | None:intergenic | 40.0% |
| !! | ACAGATGATGATGATGATGG+TGG | - | chr7_3:69281573-69281592 | None:intergenic | 40.0% |
| ! | GGAACAGATGATGATGATGA+TGG | - | chr7_3:69281576-69281595 | None:intergenic | 40.0% |
| TCAGTTGTTGCATGATTCTG+TGG | - | chr7_3:69281600-69281619 | None:intergenic | 40.0% | |
| ATCATGCAACAACTGAGAAC+TGG | + | chr7_3:69281604-69281623 | Msa1120090:CDS | 40.0% | |
| TCATGCAACAACTGAGAACT+GGG | + | chr7_3:69281605-69281624 | Msa1120090:CDS | 40.0% | |
| AACTGGGGAACACATATGAT+GGG | + | chr7_3:69281621-69281640 | Msa1120090:CDS | 40.0% | |
| TTGTTGTCTGGATGACTACT+TGG | - | chr7_3:69281660-69281679 | None:intergenic | 40.0% | |
| TTACAAACTGCTTCTGCTGA+TGG | + | chr7_3:69281690-69281709 | Msa1120090:CDS | 40.0% | |
| ATTGTGCCAGATGTTATTGG+CGG | - | chr7_3:69281859-69281878 | None:intergenic | 40.0% | |
| ACGATTGTGCCAGATGTTAT+TGG | - | chr7_3:69281862-69281881 | None:intergenic | 40.0% | |
| TAACCCTCCTTACTTCTAGA+AGG | + | chr7_3:69281944-69281963 | Msa1120090:intron | 40.0% | |
| ! | CAATCCTTCTAGAAGTAAGG+AGG | - | chr7_3:69281951-69281970 | None:intergenic | 40.0% |
| ! | AGTTCTGATAATATCCACGG+TGG | - | chr7_3:69282517-69282536 | None:intergenic | 40.0% |
| ATTGCAGCTGAAGACAATGA+AGG | - | chr7_3:69282705-69282724 | None:intergenic | 40.0% | |
| TTCATTGTCTTCAGCTGCAA+TGG | + | chr7_3:69282704-69282723 | Msa1120090:CDS | 40.0% | |
| TCATTGTCTTCAGCTGCAAT+GGG | + | chr7_3:69282705-69282724 | Msa1120090:CDS | 40.0% | |
| GACTGTAAAAGCGATATCAG+AGG | + | chr7_3:69282740-69282759 | Msa1120090:CDS | 40.0% | |
| ATAAGTAGGTAGACACCTGA+GGG | + | chr7_3:69283069-69283088 | Msa1120090:intron | 40.0% | |
| TGTTCCATTATACTACCCTC+AGG | - | chr7_3:69283087-69283106 | None:intergenic | 40.0% | |
| ! | GGGTAGTATAATGGAACAAG+TGG | + | chr7_3:69283089-69283108 | Msa1120090:intron | 40.0% |
| ACGGGATTAATCACCGAATT+CGG | - | chr7_3:69283235-69283254 | None:intergenic | 40.0% | |
| TTGACACAAAAGAGGGACAA+GGG | - | chr7_3:69283538-69283557 | None:intergenic | 40.0% | |
| ATTGACACAAAAGAGGGACA+AGG | - | chr7_3:69283539-69283558 | None:intergenic | 40.0% | |
| ! | GTTTAAGGCTCTTTACCGAA+AGG | - | chr7_3:69283633-69283652 | None:intergenic | 40.0% |
| ACTGTTCCAATCTTCGCTAA+AGG | - | chr7_3:69283729-69283748 | None:intergenic | 40.0% | |
| CAGTTAATCCTGTGATCATG+AGG | + | chr7_3:69283745-69283764 | Msa1120090:CDS | 40.0% | |
| ATCCAGATTGTGACAGTTGA+CGG | + | chr7_3:69283789-69283808 | Msa1120090:CDS | 40.0% | |
| !!! | GGGCATGATTTTTGGTTCAT+GGG | + | chr7_3:69283810-69283829 | Msa1120090:CDS | 40.0% |
| GAACTAGTTAGTCGTTGGTA+CGG | - | chr7_3:69283907-69283926 | None:intergenic | 40.0% | |
| ! | GACTAACTAGTTCTTCAAGC+TGG | + | chr7_3:69283914-69283933 | Msa1120090:exon | 40.0% |
| ! | GGAATTTTCCCCATTTCTCT+TGG | + | chr7_3:69283935-69283954 | Msa1120090:three_prime_UTR | 40.0% |
| AGGAGACAAGACACTGTTGT+TGG | - | chr7_3:69281340-69281359 | None:intergenic | 45.0% | |
| !! | GATGATGATGATGATGGTGG+TGG | - | chr7_3:69281570-69281589 | None:intergenic | 45.0% |
| GTTGTTGCATGATTCTGTGG+TGG | - | chr7_3:69281597-69281616 | None:intergenic | 45.0% | |
| CATGCAACAACTGAGAACTG+GGG | + | chr7_3:69281606-69281625 | Msa1120090:CDS | 45.0% | |
| GAACTGGGGAACACATATGA+TGG | + | chr7_3:69281620-69281639 | Msa1120090:CDS | 45.0% | |
| TAGTAATGAACCTGAGGCTG+AGG | - | chr7_3:69281726-69281745 | None:intergenic | 45.0% | |
| TGCTGGTAGTAATGAACCTG+AGG | - | chr7_3:69281732-69281751 | None:intergenic | 45.0% | |
| CTACTGCTAGGCTTATCAAC+AGG | - | chr7_3:69281780-69281799 | None:intergenic | 45.0% | |
| TAAGCCTAGCAGTAGTCCTA+TGG | + | chr7_3:69281785-69281804 | Msa1120090:CDS | 45.0% | |
| GATTCCATAGGACTACTGCT+AGG | - | chr7_3:69281792-69281811 | None:intergenic | 45.0% | |
| AAGCTACCGCCAATAACATC+TGG | + | chr7_3:69281850-69281869 | Msa1120090:CDS | 45.0% | |
| GTGGATCGAAACATGCTCTA+AGG | - | chr7_3:69282498-69282517 | None:intergenic | 45.0% | |
| CCTAACATACACATGAAGGG+CGG | + | chr7_3:69282618-69282637 | Msa1120090:intron | 45.0% | |
| CATTGTCTTCAGCTGCAATG+GGG | + | chr7_3:69282706-69282725 | Msa1120090:CDS | 45.0% | |
| GTAAAAGCGATATCAGAGGG+TGG | + | chr7_3:69282744-69282763 | Msa1120090:CDS | 45.0% | |
| AAGTAAAGGGTTCCTGCAAC+AGG | - | chr7_3:69282861-69282880 | None:intergenic | 45.0% | |
| AGGGTGCAGTGAAACTCAAA+GGG | - | chr7_3:69282917-69282936 | None:intergenic | 45.0% | |
| TGTAGTAGCTCCAAGTCACT+TGG | - | chr7_3:69282944-69282963 | None:intergenic | 45.0% | |
| ! | AGTGACTTGGAGCTACTACA+AGG | + | chr7_3:69282944-69282963 | Msa1120090:CDS | 45.0% |
| GATAAGTAGGTAGACACCTG+AGG | + | chr7_3:69283068-69283087 | Msa1120090:intron | 45.0% | |
| GACACCTGAGGGTAGTATAA+TGG | + | chr7_3:69283080-69283099 | Msa1120090:intron | 45.0% | |
| GTCGCAAAGGTAGACACAAT+TGG | - | chr7_3:69283387-69283406 | None:intergenic | 45.0% | |
| TAGCTGCTCTATAGTCGCAA+AGG | - | chr7_3:69283400-69283419 | None:intergenic | 45.0% | |
| TGACACAAAAGAGGGACAAG+GGG | - | chr7_3:69283537-69283556 | None:intergenic | 45.0% | |
| ATGGTGCCTTTAGCGAAGAT+TGG | + | chr7_3:69283720-69283739 | Msa1120090:CDS | 45.0% | |
| TGATTCTCCCTCATGATCAC+AGG | - | chr7_3:69283756-69283775 | None:intergenic | 45.0% | |
| TCCAGATTGTGACAGTTGAC+GGG | + | chr7_3:69283790-69283809 | Msa1120090:CDS | 45.0% | |
| !! | CAGTTGACGGGCATGATTTT+TGG | + | chr7_3:69283802-69283821 | Msa1120090:CDS | 45.0% |
| !!! | CGGGCATGATTTTTGGTTCA+TGG | + | chr7_3:69283809-69283828 | Msa1120090:CDS | 45.0% |
| GCAGTAAAGAACCTATCGGA+AGG | + | chr7_3:69283852-69283871 | Msa1120090:CDS | 45.0% | |
| AATGTGAGATGCCTTCCGAT+AGG | - | chr7_3:69283866-69283885 | None:intergenic | 45.0% | |
| ! | ATCTCACATTTTGTTGCGCC+CGG | + | chr7_3:69283876-69283895 | Msa1120090:CDS | 45.0% |
| !!! | TATAATTTTTATTAAAATTG+TGG | - | chr7_3:69282557-69282576 | None:intergenic | 5.0% |
| ! | GCAAAGAAGCATAGTCGGTG+TGG | + | chr7_3:69281293-69281312 | Msa1120090:five_prime_UTR | 50.0% |
| !! | GTGGTGCTGGTGATGCAAAT+GGG | - | chr7_3:69281548-69281567 | None:intergenic | 50.0% |
| !! | GATGATGATGATGGTGGTGG+TGG | - | chr7_3:69281567-69281586 | None:intergenic | 50.0% |
| GGATGACTACTTGGTACAGC+TGG | - | chr7_3:69281651-69281670 | None:intergenic | 50.0% | |
| ! | ACTGCTTCTGCTGATGGACA+AGG | + | chr7_3:69281696-69281715 | Msa1120090:CDS | 50.0% |
| GCACGTATGGATGATCTTGC+TGG | - | chr7_3:69281749-69281768 | None:intergenic | 50.0% | |
| ACAGGACTGTGTTGCACGTA+TGG | - | chr7_3:69281762-69281781 | None:intergenic | 50.0% | |
| CCGCCCTTCATGTGTATGTT+AGG | - | chr7_3:69282621-69282640 | None:intergenic | 50.0% | |
| ! | CAGGCCCTGTTGTTGTTGAA+AGG | - | chr7_3:69282842-69282861 | None:intergenic | 50.0% |
| ! | GAGGGTGCAGTGAAACTCAA+AGG | - | chr7_3:69282918-69282937 | None:intergenic | 50.0% |
| TTGAGTTTCACTGCACCCTC+CGG | + | chr7_3:69282918-69282937 | Msa1120090:CDS | 50.0% | |
| !! | GGTGGTGCTGGTGATGCAAA+TGG | - | chr7_3:69281549-69281568 | None:intergenic | 55.0% |
| ACAAGGACAACCTCAGCCTC+AGG | + | chr7_3:69281713-69281732 | Msa1120090:CDS | 55.0% | |
| GAGCATGTTTCGATCCACCG+TGG | + | chr7_3:69282500-69282519 | Msa1120090:intron | 55.0% | |
| ACAACAACAGGGCCTGTTGC+AGG | + | chr7_3:69282846-69282865 | Msa1120090:CDS | 55.0% | |
| GTAGCTCCAAGTCACTTGGC+CGG | - | chr7_3:69282940-69282959 | None:intergenic | 55.0% | |
| CTAGCATAGCGTAGCGAAGC+TGG | - | chr7_3:69283507-69283526 | None:intergenic | 55.0% | |
| CACAAAAGAGGGACAAGGGG+TGG | - | chr7_3:69283534-69283553 | None:intergenic | 55.0% | |
| GCCCGTCAACTGTCACAATC+TGG | - | chr7_3:69283794-69283813 | None:intergenic | 55.0% | |
| !! | GATGATGGTGGTGGTGGTGC+TGG | - | chr7_3:69281561-69281580 | None:intergenic | 60.0% |
| CTCCAAGTCACTTGGCCGGA+GGG | - | chr7_3:69282936-69282955 | None:intergenic | 60.0% | |
| AGTCGTTGGTACGGCTACGC+CGG | - | chr7_3:69283898-69283917 | None:intergenic | 60.0% | |
| CACCCTCCGGCCAAGTGACT+TGG | + | chr7_3:69282931-69282950 | Msa1120090:CDS | 65.0% | |
| GCTCCAAGTCACTTGGCCGG+AGG | - | chr7_3:69282937-69282956 | None:intergenic | 65.0% | |
| GTCGTTGGTACGGCTACGCC+GGG | - | chr7_3:69283897-69283916 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69281284 | 69284154 | 69281284 | ID=Msa1120090;Name=Msa1120090 |
| chr7_3 | mRNA | 69281284 | 69284154 | 69281284 | ID=Msa1120090-mRNA-1;Parent=Msa1120090;Name=Msa1120090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211|1|1|1|1|1|3|231|288 |
| chr7_3 | exon | 69281284 | 69281879 | 69281284 | ID=Msa1120090-mRNA-1:exon:17510;Parent=Msa1120090-mRNA-1 |
| chr7_3 | exon | 69282691 | 69282965 | 69282691 | ID=Msa1120090-mRNA-1:exon:17511;Parent=Msa1120090-mRNA-1 |
| chr7_3 | exon | 69283717 | 69284154 | 69283717 | ID=Msa1120090-mRNA-1:exon:17512;Parent=Msa1120090-mRNA-1 |
| chr7_3 | five_prime_UTR | 69281284 | 69281494 | 69281284 | ID=Msa1120090-mRNA-1:five_prime_utr;Parent=Msa1120090-mRNA-1 |
| chr7_3 | CDS | 69281495 | 69281879 | 69281495 | ID=Msa1120090-mRNA-1:cds;Parent=Msa1120090-mRNA-1 |
| chr7_3 | CDS | 69282691 | 69282965 | 69282691 | ID=Msa1120090-mRNA-1:cds;Parent=Msa1120090-mRNA-1 |
| chr7_3 | CDS | 69283717 | 69283923 | 69283717 | ID=Msa1120090-mRNA-1:cds;Parent=Msa1120090-mRNA-1 |
| chr7_3 | three_prime_UTR | 69283924 | 69284154 | 69283924 | ID=Msa1120090-mRNA-1:three_prime_utr;Parent=Msa1120090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
