AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168900 MtrunA17_Chr1g0185521 97.665 257 6 0 1 257 1 257 0.0 502
Msa0168900 MtrunA17_Chr8g0353481 36.723 177 110 1 81 257 84 258 3.23e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168900 AT3G63190.1 64.815 270 82 5 1 257 1 270 2.63e-110 320
Msa0168900 AT3G01800.1 38.235 170 103 1 88 257 95 262 8.21e-29 110

Find 52 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACTTCTCCATCGTTAT+TGG 0.194025 1_4:+51952551 None:intergenic
TCCTGATGCCAGTTCACTTT+TGG 0.242942 1_4:-51952997 Msa0168900:CDS
AGATTTGTCTAGCGATTTGC+AGG 0.346351 1_4:-51948358 Msa0168900:intron
ATCACTTCTCCATCGTTATT+GGG 0.347336 1_4:+51952552 None:intergenic
ACATTATAGGTGGAATACTA+TGG 0.360282 1_4:-51953059 Msa0168900:intron
ACACACCTTGATTTGTCATA+TGG 0.377979 1_4:+51952969 None:intergenic
AATTTCAGTTCTATAAGAAC+TGG 0.378877 1_4:-51954048 Msa0168900:CDS
GGTTGTTGACATTTCATAGA+AGG 0.388166 1_4:-51954353 Msa0168900:intron
ATGGAACGGAGGGGTGTTGT+TGG 0.392327 1_4:+51954501 None:intergenic
GTGTGCAGAAAGAAGGGCTT+TGG 0.399732 1_4:+51954455 None:intergenic
GCAATGGTCTTCAAGCTAAC+TGG 0.399998 1_4:+51953032 None:intergenic
AGAAGGGCTTTGGGAACAAT+TGG 0.409380 1_4:+51954465 None:intergenic
AAAGAACTCTTGACAATGTT+AGG 0.410140 1_4:-51954074 Msa0168900:CDS
GGGTGTTGTTGGAGAGAAAG+AGG 0.438519 1_4:+51954512 None:intergenic
GCAGACACTCCCTTTCTAAA+GGG 0.448929 1_4:-51954374 Msa0168900:CDS
AGCAGACACTCCCTTTCTAA+AGG 0.450579 1_4:-51954375 Msa0168900:CDS
AGAGCGTTTGATGGTGAAAG+AGG 0.456249 1_4:+51954431 None:intergenic
CTATATGTCTTCAGAAAAGT+AGG 0.473495 1_4:-51954101 Msa0168900:intron
AGAGAGCTTTAGAGTGACAT+AGG 0.476096 1_4:+51954404 None:intergenic
ACCAAAAGTGAACTGGCATC+AGG 0.479918 1_4:+51952996 None:intergenic
AAGAGGAGTGTGCAGAAAGA+AGG 0.485037 1_4:+51954448 None:intergenic
ATGTCAACAACCCTTTAGAA+AGG 0.489868 1_4:+51954364 None:intergenic
GCTATAGTTAACTCTGATGT+TGG 0.492221 1_4:-51952582 Msa0168900:CDS
TGTGCAGAAAGAAGGGCTTT+GGG 0.498070 1_4:+51954456 None:intergenic
TGGCGAGACCAAAAGTGAAC+TGG 0.501357 1_4:+51952989 None:intergenic
GTGTCTAAACAAGTTGAAGA+AGG 0.505883 1_4:-51948920 Msa0168900:CDS
TTGTGTTCTTGTCTTTGTTG+TGG 0.510736 1_4:+51954557 None:intergenic
ATAGGTTGAAGAGCGTTTGA+TGG 0.516882 1_4:+51954422 None:intergenic
TATGTCACTCTAAAGCTCTC+TGG 0.530815 1_4:-51954402 Msa0168900:CDS
AGAGGAGTGTGCAGAAAGAA+GGG 0.537281 1_4:+51954449 None:intergenic
TCTCGCCATATGACAAATCA+AGG 0.540182 1_4:-51952974 Msa0168900:intron
GACTGATGATTATATAAAGA+AGG 0.541481 1_4:-51948008 Msa0168900:CDS
CCTCTACAAACAGAAAGAAA+AGG 0.543613 1_4:-51947978 Msa0168900:intron
TGTCAACAACCCTTTAGAAA+GGG 0.543696 1_4:+51954365 None:intergenic
AGGAGTGCTTATTTGAGCAA+TGG 0.572944 1_4:+51953016 None:intergenic
GGGCTTTGGGAACAATTGGA+AGG 0.573894 1_4:+51954469 None:intergenic
GTCTATGCTTGACAAAATTG+AGG 0.583206 1_4:-51954013 Msa0168900:intron
CTCAGTTGACATCTGATAGA+CGG 0.584774 1_4:-51952515 Msa0168900:CDS
ATGTCTTCAGAAAAGTAGGA+TGG 0.586348 1_4:-51954097 Msa0168900:intron
TGTCTAAACAAGTTGAAGAA+GGG 0.590313 1_4:-51948919 Msa0168900:CDS
TAAACAAGTTGAAGAAGGGA+AGG 0.590688 1_4:-51948915 Msa0168900:intron
GTCTATCAGATGTCAACTGA+GGG 0.592082 1_4:+51952517 None:intergenic
ACCCAGAAAGGGATTTGTGA+GGG 0.603850 1_4:-51954245 Msa0168900:intron
ATAACGATGGAGAAGTGATA+CGG 0.614514 1_4:-51952548 Msa0168900:CDS
ATTTCAGTTCTATAAGAACT+GGG 0.614614 1_4:-51954047 Msa0168900:CDS
TAGAAAGGGAGTGTCTGCTA+CGG 0.630413 1_4:+51954379 None:intergenic
ACAAGGCGTAGAGCATCTCA+TGG 0.646072 1_4:-51954538 Msa0168900:exon
CGTCTATCAGATGTCAACTG+AGG 0.647000 1_4:+51952516 None:intergenic
GTTGACATCTGATAGACGGA+AGG 0.650277 1_4:-51952511 Msa0168900:intron
TACCCAGAAAGGGATTTGTG+AGG 0.662137 1_4:-51954246 Msa0168900:intron
ACAACAAAGACAAGAACACA+AGG 0.687493 1_4:-51954555 Msa0168900:five_prime_UTR
GGTATGACTCCCAATAACGA+TGG 0.693482 1_4:-51952561 Msa0168900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTAGAGAAT+CGG - chr1_4:51947804-51947823 Msa0168900:intron 10.0%
!!! ATTTATAACAGTTAATTTTA+GGG + chr1_4:51950673-51950692 None:intergenic 10.0%
!!! TATTTATAACAGTTAATTTT+AGG + chr1_4:51950674-51950693 None:intergenic 10.0%
!! TAAAATAATAAGGTTATTAT+TGG - chr1_4:51951160-51951179 Msa0168900:intron 10.0%
!!! TTTTGATGTAAAAATTATAT+TGG + chr1_4:51953782-51953801 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948100-51948119 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948100-51948119 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948100-51948119 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948100-51948119 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948107-51948126 None:intergenic 100.0%
!!! TTTTTATGTATATATGAATG+TGG - chr1_4:51946768-51946787 Msa0168900:intron 15.0%
!!! TTTTATGTATATATGAATGT+GGG - chr1_4:51946769-51946788 Msa0168900:intron 15.0%
!!! ATTTTAATTTGTTGTTCTAA+AGG - chr1_4:51946991-51947010 Msa0168900:intron 15.0%
!! AAAAGAAAAAGTTATCAATT+TGG + chr1_4:51947680-51947699 None:intergenic 15.0%
!! AAAAATAAAACTAAAAAGTG+TGG + chr1_4:51947794-51947813 None:intergenic 15.0%
!! CTTATTAAAAATAATGTGTT+TGG - chr1_4:51949436-51949455 Msa0168900:intron 15.0%
!!! TCTATTTTTATAAAACTCAA+GGG + chr1_4:51949551-51949570 None:intergenic 15.0%
!!! ATCTATTTTTATAAAACTCA+AGG + chr1_4:51949552-51949571 None:intergenic 15.0%
!!! TGTTTTAACAGTTTAATAAA+CGG + chr1_4:51949600-51949619 None:intergenic 15.0%
!! ATCTAATTAGAATTTGAATT+TGG - chr1_4:51949949-51949968 Msa0168900:intron 15.0%
!!! TGATGAATAAATATTTTCAA+AGG + chr1_4:51950763-51950782 None:intergenic 15.0%
!! AATAATCAAATGAGTTAAAT+TGG + chr1_4:51951040-51951059 None:intergenic 15.0%
!! AACTTAAAAGAATATAGAAA+AGG - chr1_4:51951698-51951717 Msa0168900:intron 15.0%
!! TGAATTAACTATTTACTTAT+AGG - chr1_4:51953070-51953089 Msa0168900:intron 15.0%
!!! ATGAATAATTTAATTTTGCT+AGG + chr1_4:51954048-51954067 None:intergenic 15.0%
!! AAATCACTAGAAATAAATTT+GGG + chr1_4:51954105-51954124 None:intergenic 15.0%
!! AAAATCACTAGAAATAAATT+TGG + chr1_4:51954106-51954125 None:intergenic 15.0%
!! TTTATGTATATATGAATGTG+GGG - chr1_4:51946770-51946789 Msa0168900:intron 20.0%
!!! TTTAAGTGTTTGTTAAATAG+TGG - chr1_4:51947143-51947162 Msa0168900:intron 20.0%
!! TTATACTAAGTAGTATATCA+AGG + chr1_4:51947216-51947235 None:intergenic 20.0%
!! CTATTATTGTTTACTAGTAA+CGG + chr1_4:51947452-51947471 None:intergenic 20.0%
!!! AACAATTTCTGAGAAAATTA+CGG - chr1_4:51947546-51947565 Msa0168900:intron 20.0%
!!! GATAACTTTTTCTTTTATTG+TGG - chr1_4:51947684-51947703 Msa0168900:intron 20.0%
!!! AATATTGATTTTTAGCTTGA+AGG - chr1_4:51948293-51948312 Msa0168900:intron 20.0%
!! ACACACTTGAATAATTTAAA+TGG - chr1_4:51948597-51948616 Msa0168900:intron 20.0%
!! TTTAACAACGATATATACAA+AGG - chr1_4:51948641-51948660 Msa0168900:intron 20.0%
!! ATTTCTATACATTAAGTCTT+TGG - chr1_4:51948925-51948944 Msa0168900:CDS 20.0%
!! TAATGTGTTTGGTAAAATTA+AGG - chr1_4:51949447-51949466 Msa0168900:intron 20.0%
!! AATGTGTTTGGTAAAATTAA+GGG - chr1_4:51949448-51949467 Msa0168900:intron 20.0%
!! AGAAATTAATCTATAGGAAA+AGG + chr1_4:51949857-51949876 None:intergenic 20.0%
!! AGTTGTAGAAATTAATCTAT+AGG + chr1_4:51949863-51949882 None:intergenic 20.0%
!! GATTAATTTCTACAACTAAT+AGG - chr1_4:51949866-51949885 Msa0168900:intron 20.0%
!!! ATGCATATACAATTTTGTTT+TGG + chr1_4:51950013-51950032 None:intergenic 20.0%
!! AATGAAGGAAATGAAATAAT+AGG - chr1_4:51950531-51950550 Msa0168900:intron 20.0%
!!! TTAAATTGTCATGTACTTTT+AGG + chr1_4:51950705-51950724 None:intergenic 20.0%
!! CTATAATGCTAAATTTGAAA+AGG - chr1_4:51950842-51950861 Msa0168900:intron 20.0%
!!! TTTACTTCCTTTAAGAAATT+TGG - chr1_4:51950992-51951011 Msa0168900:intron 20.0%
!! ATTTATACAAGAAAGACAAT+AGG - chr1_4:51951621-51951640 Msa0168900:intron 20.0%
!! TTAGTTATACATGAATTATG+TGG - chr1_4:51951861-51951880 Msa0168900:intron 20.0%
!!! TTTATTCTAGAAGCATATTA+TGG + chr1_4:51952271-51952290 None:intergenic 20.0%
!! ATTCACCAATAAAAACAAAA+GGG + chr1_4:51952638-51952657 None:intergenic 20.0%
!!! TTTTGTTTTTATTGGTGAAT+GGG - chr1_4:51952638-51952657 Msa0168900:intron 20.0%
!!! TTGTTGTTGTATTTCATTAT+TGG - chr1_4:51952812-51952831 Msa0168900:intron 20.0%
!! ATATAAACATATCAAGTAAG+TGG + chr1_4:51952969-51952988 None:intergenic 20.0%
!! ATTAATTAGATGCTTAAACA+TGG - chr1_4:51953011-51953030 Msa0168900:CDS 20.0%
!!! TTCACAAAACTATTTTTCTA+TGG - chr1_4:51953040-51953059 Msa0168900:CDS 20.0%
!!! ATAAAACATTTTGTTGAAAG+AGG + chr1_4:51953129-51953148 None:intergenic 20.0%
!! TATTTCACAAATTATTTGAG+AGG + chr1_4:51953190-51953209 None:intergenic 20.0%
!!! ACAAGATTCTTTTAGTTTTT+TGG - chr1_4:51953261-51953280 Msa0168900:intron 20.0%
!!! CAAGATTCTTTTAGTTTTTT+GGG - chr1_4:51953262-51953281 Msa0168900:intron 20.0%
!!! AAGATTCTTTTAGTTTTTTG+GGG - chr1_4:51953263-51953282 Msa0168900:intron 20.0%
!! TTACACATTTAGATTAACTT+TGG - chr1_4:51953472-51953491 Msa0168900:intron 20.0%
!! AATTCTTAAAATTCAAAGAC+TGG + chr1_4:51953567-51953586 None:intergenic 20.0%
!!! TTTTGTACATATGTATATCA+AGG - chr1_4:51954123-51954142 Msa0168900:intron 20.0%
!! TTTGTACATATGTATATCAA+GGG - chr1_4:51954124-51954143 Msa0168900:intron 20.0%
!!! AGATTACTTTTTTGTATCAA+AGG + chr1_4:51954199-51954218 None:intergenic 20.0%
!!! GCATTTGTTTATTTGTTATA+CGG - chr1_4:51954313-51954332 Msa0168900:intron 20.0%
!!! TATGCTTTTTCAAATTGAAA+AGG - chr1_4:51954359-51954378 Msa0168900:CDS 20.0%
!!! ACTTGTTAAACAAAACAAAA+TGG + chr1_4:51954535-51954554 None:intergenic 20.0%
!!! CATTTCTAGAGTGATAATTT+TGG + chr1_4:51946584-51946603 None:intergenic 25.0%
!! TCAATTTTGAACTACTTCAT+TGG - chr1_4:51946611-51946630 Msa0168900:intron 25.0%
!!! TTTTTGAAAAATACCCAGAA+AGG - chr1_4:51946652-51946671 Msa0168900:intron 25.0%
!!! TTTTGAAAAATACCCAGAAA+GGG - chr1_4:51946653-51946672 Msa0168900:intron 25.0%
! AATTTCAGTTCTATAAGAAC+TGG - chr1_4:51946861-51946880 Msa0168900:intron 25.0%
! ATTTCAGTTCTATAAGAACT+GGG - chr1_4:51946862-51946881 Msa0168900:intron 25.0%
! TTACTTCATTTCACTTGATT+TGG - chr1_4:51947115-51947134 Msa0168900:intron 25.0%
! CGTTACTAGTAAACAATAAT+AGG - chr1_4:51947450-51947469 Msa0168900:intron 25.0%
! ACAATAATAGGACAAAACTT+AGG - chr1_4:51947462-51947481 Msa0168900:intron 25.0%
! AATTGCATATACTTACACAA+TGG - chr1_4:51947710-51947729 Msa0168900:intron 25.0%
! TTAAACCAGAAAGAATGAAA+TGG - chr1_4:51947979-51947998 Msa0168900:CDS 25.0%
! AATATTTGTATCATTCCGTA+CGG - chr1_4:51948157-51948176 Msa0168900:intron 25.0%
!!! TGTTGAAGAATGTCTTATTT+GGG + chr1_4:51948184-51948203 None:intergenic 25.0%
!! TTGTTGAAGAATGTCTTATT+TGG + chr1_4:51948185-51948204 None:intergenic 25.0%
! TTACCAAAGAAAAACCTTAT+TGG - chr1_4:51949079-51949098 Msa0168900:intron 25.0%
! TACCAAAGAAAAACCTTATT+GGG - chr1_4:51949080-51949099 Msa0168900:intron 25.0%
!! GTTTTTATTGTAAACTAGAC+CGG + chr1_4:51949264-51949283 None:intergenic 25.0%
! TGTCTATTGTAAAATTAGAG+GGG + chr1_4:51949521-51949540 None:intergenic 25.0%
! GTGTCTATTGTAAAATTAGA+GGG + chr1_4:51949522-51949541 None:intergenic 25.0%
! AGTGTCTATTGTAAAATTAG+AGG + chr1_4:51949523-51949542 None:intergenic 25.0%
!! ATTTTTATAAAACTCAAGGG+AGG + chr1_4:51949548-51949567 None:intergenic 25.0%
! AGAATTTGCAAAATATGAGA+GGG + chr1_4:51949732-51949751 None:intergenic 25.0%
! AAGAATTTGCAAAATATGAG+AGG + chr1_4:51949733-51949752 None:intergenic 25.0%
! AAACAAAATTCCTATACGAT+AGG - chr1_4:51949913-51949932 Msa0168900:intron 25.0%
! GTTCTTTCTAATAGATTATG+AGG + chr1_4:51949991-51950010 None:intergenic 25.0%
! AAAGAAATGCCTAGAATTAT+TGG + chr1_4:51950148-51950167 None:intergenic 25.0%
! AATAATTCTAGGCATTTCTT+TGG - chr1_4:51950147-51950166 Msa0168900:intron 25.0%
! ATAATTCTAGGCATTTCTTT+GGG - chr1_4:51950148-51950167 Msa0168900:intron 25.0%
! ACACGAAATATTGCTATATT+GGG + chr1_4:51950344-51950363 None:intergenic 25.0%
! AACACGAAATATTGCTATAT+TGG + chr1_4:51950345-51950364 None:intergenic 25.0%
! ATCAGTGTTTAAACTTTAAC+AGG - chr1_4:51950483-51950502 Msa0168900:intron 25.0%
! TCAGTGTTTAAACTTTAACA+GGG - chr1_4:51950484-51950503 Msa0168900:intron 25.0%
! AAATAATAGGTTGTCTTTGA+CGG - chr1_4:51950544-51950563 Msa0168900:intron 25.0%
! ATACATATTGATAGAGTTGA+GGG - chr1_4:51950630-51950649 Msa0168900:intron 25.0%
!!! TCATTTTGATGTATGAAGAA+GGG + chr1_4:51950817-51950836 None:intergenic 25.0%
!!! TTCATTTTGATGTATGAAGA+AGG + chr1_4:51950818-51950837 None:intergenic 25.0%
! CAGATACTATTGCATAATTT+AGG + chr1_4:51951064-51951083 None:intergenic 25.0%
!!! ATGTTTCCAGTTTTTAAGAT+GGG - chr1_4:51951471-51951490 Msa0168900:intron 25.0%
! ACAAAAACAATCAATGAGAA+AGG - chr1_4:51951748-51951767 Msa0168900:intron 25.0%
! CAAAAACAATCAATGAGAAA+GGG - chr1_4:51951749-51951768 Msa0168900:intron 25.0%
! AAAAACAATCAATGAGAAAG+GGG - chr1_4:51951750-51951769 Msa0168900:intron 25.0%
!! AAATTCCAACAGAATTGTTT+TGG - chr1_4:51951798-51951817 Msa0168900:intron 25.0%
! AATGACATGGTTTCATAAAA+AGG + chr1_4:51951834-51951853 None:intergenic 25.0%
!! ATGAAACCATGTCATTTAAA+TGG - chr1_4:51951838-51951857 Msa0168900:intron 25.0%
! AACTAACCATTTAAATGACA+TGG + chr1_4:51951847-51951866 None:intergenic 25.0%
!! TATGTTTTGTCATAATGAAC+TGG - chr1_4:51952041-51952060 Msa0168900:intron 25.0%
!!! TGCTTCTAGAATAAATGTTT+TGG - chr1_4:51952276-51952295 Msa0168900:intron 25.0%
! AAGTTGTTTGTAACTTTCTT+TGG - chr1_4:51952307-51952326 Msa0168900:intron 25.0%
! AGCTTATGAAAAACTTGAAA+AGG - chr1_4:51952395-51952414 Msa0168900:intron 25.0%
! ACAAGGAATAAATTACTGAA+GGG + chr1_4:51952457-51952476 None:intergenic 25.0%
!!! GTGATTAATGAAAGGTATTA+CGG + chr1_4:51952483-51952502 None:intergenic 25.0%
! CATTCACCAATAAAAACAAA+AGG + chr1_4:51952639-51952658 None:intergenic 25.0%
!!! CTTTTGTTTTTATTGGTGAA+TGG - chr1_4:51952637-51952656 Msa0168900:intron 25.0%
! TGTATTTCATTATTGGTCAA+TGG - chr1_4:51952819-51952838 Msa0168900:intron 25.0%
! GACTGATGATTATATAAAGA+AGG - chr1_4:51952901-51952920 Msa0168900:intron 25.0%
! GTAAATAGTTAATTCAAACC+AGG + chr1_4:51953066-51953085 None:intergenic 25.0%
!!! AGATTCTTTTAGTTTTTTGG+GGG - chr1_4:51953264-51953283 Msa0168900:intron 25.0%
!! TATTAGATTTAGAACCGTAT+TGG + chr1_4:51953312-51953331 None:intergenic 25.0%
! AATGATGTTTCATTTGAACA+TGG - chr1_4:51953416-51953435 Msa0168900:intron 25.0%
! AAATGTGTAAATGAATTGAG+AGG + chr1_4:51953462-51953481 None:intergenic 25.0%
! AAAAATTATATTGGAAGCCT+TGG + chr1_4:51953773-51953792 None:intergenic 25.0%
! TAAACATATAGCATTTCATG+TGG + chr1_4:51953850-51953869 None:intergenic 25.0%
! AATATATATCCATCCACAAA+AGG + chr1_4:51954014-51954033 None:intergenic 25.0%
! CAGCAACAAAAAAAAAAACT+TGG + chr1_4:51954265-51954284 None:intergenic 25.0%
! AATGCATCAATATTCAAACT+TGG + chr1_4:51954298-51954317 None:intergenic 25.0%
! AGATCCTTATGATTTCTATT+GGG - chr1_4:51954486-51954505 Msa0168900:CDS 25.0%
!! TTAACAAGTTTATTTAGCTC+AGG - chr1_4:51954546-51954565 Msa0168900:five_prime_UTR 25.0%
!!! AATTGGAAGGTTTTGAAAGA+TGG + chr1_4:51946430-51946449 None:intergenic 30.0%
CTATATGTCTTCAGAAAAGT+AGG - chr1_4:51946808-51946827 Msa0168900:intron 30.0%
AAAGAACTCTTGACAATGTT+AGG - chr1_4:51946835-51946854 Msa0168900:intron 30.0%
! TCAATTTTGTCAAGCATAGA+CGG + chr1_4:51946897-51946916 None:intergenic 30.0%
!! TGTTCTAAAGGTAGATCAAT+TGG - chr1_4:51947003-51947022 Msa0168900:intron 30.0%
!! TCATTTCACTTGATTTGGAT+TGG - chr1_4:51947120-51947139 Msa0168900:intron 30.0%
TACAAACTGTTGTCAAATAG+CGG - chr1_4:51947319-51947338 Msa0168900:intron 30.0%
GAACAACACAAAAATACCTA+AGG - chr1_4:51947610-51947629 Msa0168900:intron 30.0%
! GAGCTGTTTCATAACATTAT+AGG - chr1_4:51947837-51947856 Msa0168900:intron 30.0%
CTGTTTCATAACATTATAGG+TGG - chr1_4:51947840-51947859 Msa0168900:intron 30.0%
ACATTATAGGTGGAATACTA+TGG - chr1_4:51947850-51947869 Msa0168900:intron 30.0%
CTTATCCATTTCATTCTTTC+TGG + chr1_4:51947987-51948006 None:intergenic 30.0%
CTTATTGTATACTTCATGTG+TGG - chr1_4:51948032-51948051 Msa0168900:intron 30.0%
TGTGATTAAATGTGTGCATA+TGG - chr1_4:51948228-51948247 Msa0168900:intron 30.0%
! TGCAGTGTCTAGATTATTTT+TGG - chr1_4:51948443-51948462 Msa0168900:intron 30.0%
CTGATTCAAAGTAATATTGC+TGG - chr1_4:51948516-51948535 Msa0168900:CDS 30.0%
TTCAAAGTAATATTGCTGGT+TGG - chr1_4:51948520-51948539 Msa0168900:CDS 30.0%
! TGTTTTGCTACTAATCTTGA+GGG + chr1_4:51948683-51948702 None:intergenic 30.0%
!! TTGTTTTGCTACTAATCTTG+AGG + chr1_4:51948684-51948703 None:intergenic 30.0%
ATCTTCAATAAACCCTTACA+AGG + chr1_4:51948822-51948841 None:intergenic 30.0%
TTAGAGAAAAATATCCTTCC+AGG + chr1_4:51948891-51948910 None:intergenic 30.0%
!! ACATTAAGTCTTTGGTTTGA+AGG - chr1_4:51948933-51948952 Msa0168900:CDS 30.0%
AGACAAATAGTAGAAGTTTC+AGG - chr1_4:51949045-51949064 Msa0168900:intron 30.0%
TTTATTTGGAAACCTATGCA+TGG - chr1_4:51949216-51949235 Msa0168900:intron 30.0%
!!! GACAATGTTTTTAAGTGTTC+CGG - chr1_4:51949242-51949261 Msa0168900:intron 30.0%
! TGTCATTTAAAGAGACTTCA+GGG + chr1_4:51949491-51949510 None:intergenic 30.0%
! AAACGGTGTTAAGTTTGTAA+GGG + chr1_4:51949583-51949602 None:intergenic 30.0%
! TAAACGGTGTTAAGTTTGTA+AGG + chr1_4:51949584-51949603 None:intergenic 30.0%
CGTTTCATGCTATAATAACA+GGG + chr1_4:51949823-51949842 None:intergenic 30.0%
ACGTTTCATGCTATAATAAC+AGG + chr1_4:51949824-51949843 None:intergenic 30.0%
TGTTATTATAGCATGAAACG+TGG - chr1_4:51949823-51949842 Msa0168900:intron 30.0%
CTAATATGTTCCTATCGTAT+AGG + chr1_4:51949926-51949945 None:intergenic 30.0%
GCATATAATGAAAGCAATCA+CGG - chr1_4:51950029-51950048 Msa0168900:intron 30.0%
TCTAAAAAAGAAGTGATGCT+TGG - chr1_4:51950110-51950129 Msa0168900:intron 30.0%
TAATTCTAGGCATTTCTTTG+GGG - chr1_4:51950149-51950168 Msa0168900:intron 30.0%
CAAAGTAAACAAAAACGATG+AGG - chr1_4:51950222-51950241 Msa0168900:intron 30.0%
!!! GTTGTTAAATGCTTTTTCCA+TGG - chr1_4:51950362-51950381 Msa0168900:intron 30.0%
!! CACTGATTCTAAGAATTCAT+AGG + chr1_4:51950470-51950489 None:intergenic 30.0%
TTTAACAGGGAAGAAAGAAA+AGG - chr1_4:51950497-51950516 Msa0168900:intron 30.0%
ATTTCCTTCATTGTTCATTC+AGG + chr1_4:51950523-51950542 None:intergenic 30.0%
!! TGTGTCATTTAGGAAAATAG+AGG - chr1_4:51950598-51950617 Msa0168900:intron 30.0%
!! GTGTCATTTAGGAAAATAGA+GGG - chr1_4:51950599-51950618 Msa0168900:intron 30.0%
! TGTCATTTAGGAAAATAGAG+GGG - chr1_4:51950600-51950619 Msa0168900:intron 30.0%
GATACATATTGATAGAGTTG+AGG - chr1_4:51950629-51950648 Msa0168900:intron 30.0%
TACATATTGATAGAGTTGAG+GGG - chr1_4:51950631-51950650 Msa0168900:intron 30.0%
TCTTCAGCCAAATTTCTTAA+AGG + chr1_4:51951002-51951021 None:intergenic 30.0%
TTTAAGAAATTTGGCTGAAG+AGG - chr1_4:51951001-51951020 Msa0168900:intron 30.0%
!!! AGTTGCTTTTGTTTACATGA+GGG - chr1_4:51951120-51951139 Msa0168900:intron 30.0%
! TGTGTTTGGTAACACAAAAA+AGG + chr1_4:51951338-51951357 None:intergenic 30.0%
!! CATGTTTCCAGTTTTTAAGA+TGG - chr1_4:51951470-51951489 Msa0168900:intron 30.0%
AAAACAATCAATGAGAAAGG+GGG - chr1_4:51951751-51951770 Msa0168900:intron 30.0%
TGATACCAAAACAATTCTGT+TGG + chr1_4:51951806-51951825 None:intergenic 30.0%
TGAATGTCTAAACGAATATG+TGG - chr1_4:51951891-51951910 Msa0168900:intron 30.0%
!!! ATTTTTTGTTTCTCCTTTCC+AGG - chr1_4:51951952-51951971 Msa0168900:intron 30.0%
! TGTCTAAACAAGTTGAAGAA+GGG - chr1_4:51951990-51952009 Msa0168900:intron 30.0%
! TCTTGTTTATTGCCAATTTG+AGG - chr1_4:51952065-51952084 Msa0168900:intron 30.0%
CTTGTTTATTGCCAATTTGA+GGG - chr1_4:51952066-51952085 Msa0168900:intron 30.0%
TAGCAAAGAAATAAGTTCCA+AGG + chr1_4:51952101-51952120 None:intergenic 30.0%
! ATGTTCACTTCTTTTATAGG+TGG - chr1_4:51952341-51952360 Msa0168900:intron 30.0%
GAAAGAAAGGTAAACAATGA+AGG + chr1_4:51952428-51952447 None:intergenic 30.0%
GACAAGGAATAAATTACTGA+AGG + chr1_4:51952458-51952477 None:intergenic 30.0%
TACCTTTCATTAATCACTGT+TGG - chr1_4:51952486-51952505 Msa0168900:intron 30.0%
TTCCAACAGTGATTAATGAA+AGG + chr1_4:51952491-51952510 None:intergenic 30.0%
GTAACTTGATACACTCATAT+AGG - chr1_4:51952573-51952592 Msa0168900:CDS 30.0%
CAATAAAAACAAAAGGGAGA+TGG + chr1_4:51952632-51952651 None:intergenic 30.0%
!!! CATCTCCCTTTTGTTTTTAT+TGG - chr1_4:51952630-51952649 Msa0168900:intron 30.0%
TGGGACAATATACTGTAAAA+TGG - chr1_4:51952657-51952676 Msa0168900:intron 30.0%
GGGACAATATACTGTAAAAT+GGG - chr1_4:51952658-51952677 Msa0168900:intron 30.0%
ACAACAACAAATTATCCTCA+CGG + chr1_4:51952802-51952821 None:intergenic 30.0%
! CTTTTCTTTCTGTTTGTAGA+GGG + chr1_4:51952933-51952952 None:intergenic 30.0%
!! AAAACTATTTTTCTATGGCC+TGG - chr1_4:51953045-51953064 Msa0168900:CDS 30.0%
!!! GATTCTTTTAGTTTTTTGGG+GGG - chr1_4:51953265-51953284 Msa0168900:intron 30.0%
ACTTTCTATGCATTATGTTC+TGG - chr1_4:51953369-51953388 Msa0168900:intron 30.0%
TTCATTTGAACATGGTATAG+TGG - chr1_4:51953424-51953443 Msa0168900:intron 30.0%
TTAAATCTCCATCAAGTCAA+AGG + chr1_4:51953500-51953519 None:intergenic 30.0%
TGATGGAGATTTAAGTGAAT+AGG - chr1_4:51953506-51953525 Msa0168900:intron 30.0%
TGATATGCCACATAAAATTG+TGG + chr1_4:51953727-51953746 None:intergenic 30.0%
ATGTCGCAAAATTTAATGGA+GGG - chr1_4:51953881-51953900 Msa0168900:intron 30.0%
TACTAACACGTAACAATTTC+AGG - chr1_4:51953911-51953930 Msa0168900:intron 30.0%
! CGAAGATTTATATCCTTTTG+TGG - chr1_4:51953998-51954017 Msa0168900:intron 30.0%
! GATTTATATCCTTTTGTGGA+TGG - chr1_4:51954002-51954021 Msa0168900:intron 30.0%
AATTGAGTTCTATCTAGAGA+AGG - chr1_4:51954220-51954239 Msa0168900:CDS 30.0%
GAGATCCTTATGATTTCTAT+TGG - chr1_4:51954485-51954504 Msa0168900:CDS 30.0%
TACACCCAATAGAAATCATA+AGG + chr1_4:51954493-51954512 None:intergenic 30.0%
TTGTGTTCTTGTCTTTGTTG+TGG + chr1_4:51946355-51946374 None:intergenic 35.0%
ACAACAAAGACAAGAACACA+AGG - chr1_4:51946354-51946373 Msa0168900:intron 35.0%
!!! GAAGGTTTTGAAAGATGGAA+CGG + chr1_4:51946425-51946444 None:intergenic 35.0%
! TGTCAACAACCCTTTAGAAA+GGG + chr1_4:51946547-51946566 None:intergenic 35.0%
! ATGTCAACAACCCTTTAGAA+AGG + chr1_4:51946548-51946567 None:intergenic 35.0%
GGTTGTTGACATTTCATAGA+AGG - chr1_4:51946556-51946575 Msa0168900:intron 35.0%
ATGTCTTCAGAAAAGTAGGA+TGG - chr1_4:51946812-51946831 Msa0168900:intron 35.0%
! AATTTTGTCAAGCATAGACG+GGG + chr1_4:51946895-51946914 None:intergenic 35.0%
! CAATTTTGTCAAGCATAGAC+GGG + chr1_4:51946896-51946915 None:intergenic 35.0%
GTCTATGCTTGACAAAATTG+AGG - chr1_4:51946896-51946915 Msa0168900:intron 35.0%
ATATCAAGGAACAATAGCGA+TGG + chr1_4:51947202-51947221 None:intergenic 35.0%
! ACATTGTCAATTGTGGATTG+CGG + chr1_4:51947381-51947400 None:intergenic 35.0%
CCAATCAACATTGTCAATTG+TGG + chr1_4:51947388-51947407 None:intergenic 35.0%
CCACAATTGACAATGTTGAT+TGG - chr1_4:51947385-51947404 Msa0168900:intron 35.0%
AAACTTAGGTGCATTTCCTT+AGG - chr1_4:51947476-51947495 Msa0168900:intron 35.0%
CTGAGAAAATTACGGATTTG+AGG - chr1_4:51947554-51947573 Msa0168900:intron 35.0%
TTACGGATTTGAGGAAATCA+TGG - chr1_4:51947563-51947582 Msa0168900:intron 35.0%
TACGGATTTGAGGAAATCAT+GGG - chr1_4:51947564-51947583 Msa0168900:intron 35.0%
ATGACAATTGAATGTCCCAT+AGG + chr1_4:51947643-51947662 None:intergenic 35.0%
TTATGAAACAGCTCATCTAC+AGG + chr1_4:51947831-51947850 None:intergenic 35.0%
!! ACACACCTTGATTTGTCATA+TGG + chr1_4:51947943-51947962 None:intergenic 35.0%
! CATCCTCGTTATGATTTGTA+CGG - chr1_4:51948055-51948074 Msa0168900:intron 35.0%
ACTAGTATACACAACTCAAC+GGG + chr1_4:51948126-51948145 None:intergenic 35.0%
GACTAGTATACACAACTCAA+CGG + chr1_4:51948127-51948146 None:intergenic 35.0%
AATAATTCTGAGTGAGCTCT+TGG - chr1_4:51948265-51948284 Msa0168900:intron 35.0%
GCTATAGTTAACTCTGATGT+TGG - chr1_4:51948327-51948346 Msa0168900:intron 35.0%
ATCACTTCTCCATCGTTATT+GGG + chr1_4:51948360-51948379 None:intergenic 35.0%
TATCACTTCTCCATCGTTAT+TGG + chr1_4:51948361-51948380 None:intergenic 35.0%
ATAACGATGGAGAAGTGATA+CGG - chr1_4:51948361-51948380 Msa0168900:CDS 35.0%
CAGAAAAGAAGAAAAGTCAC+AGG + chr1_4:51948475-51948494 None:intergenic 35.0%
! AGCCCAATAAGGTTTTTCTT+TGG + chr1_4:51949085-51949104 None:intergenic 35.0%
ATTCTCTACCAGTGAATACA+GGG + chr1_4:51949127-51949146 None:intergenic 35.0%
TATTCTCTACCAGTGAATAC+AGG + chr1_4:51949128-51949147 None:intergenic 35.0%
!!! ACTGCATTGGCAGTTTTATT+TGG - chr1_4:51949202-51949221 Msa0168900:intron 35.0%
AACATTGTCATTCCATGCAT+AGG + chr1_4:51949231-51949250 None:intergenic 35.0%
AAATCTCATTGATACAAGGG+TGG + chr1_4:51949304-51949323 None:intergenic 35.0%
ACCCTTGTATCAATGAGATT+TGG - chr1_4:51949303-51949322 Msa0168900:intron 35.0%
CCCAAATCTCATTGATACAA+GGG + chr1_4:51949307-51949326 None:intergenic 35.0%
CCCTTGTATCAATGAGATTT+GGG - chr1_4:51949304-51949323 Msa0168900:intron 35.0%
!! AATGAGATTTGGGCTTTGTT+TGG - chr1_4:51949314-51949333 Msa0168900:intron 35.0%
GTCATTTAAAGAGACTTCAG+GGG + chr1_4:51949490-51949509 None:intergenic 35.0%
!! GTGTCATTTAAAGAGACTTC+AGG + chr1_4:51949492-51949511 None:intergenic 35.0%
TAAGATTCATTCTCTCTGCT+TGG - chr1_4:51949640-51949659 Msa0168900:intron 35.0%
! AAAGTGTTTGTGTGGAAAGT+TGG + chr1_4:51949680-51949699 None:intergenic 35.0%
!! TAGAAGAGAAAGTGTTTGTG+TGG + chr1_4:51949688-51949707 None:intergenic 35.0%
ACACAAACACTTTCTCTTCT+AGG - chr1_4:51949687-51949706 Msa0168900:intron 35.0%
AGAGTTATACTTGTGCTTCA+AGG + chr1_4:51949790-51949809 None:intergenic 35.0%
GCTATAATAACAGGGAACTA+TGG + chr1_4:51949815-51949834 None:intergenic 35.0%
AAAAGAAGTGATGCTTGGAA+CGG - chr1_4:51950115-51950134 Msa0168900:intron 35.0%
GGGTGTATACCAATAATTCT+AGG - chr1_4:51950136-51950155 Msa0168900:intron 35.0%
!! ATTTCTTTGGGGTTCTTGAT+TGG - chr1_4:51950160-51950179 Msa0168900:intron 35.0%
AGCAATGAGAATGAAAGCAA+CGG - chr1_4:51950306-51950325 Msa0168900:intron 35.0%
!!! TGCGTGTGTTATTTTCTTGA+AGG - chr1_4:51950437-51950456 Msa0168900:intron 35.0%
!!! GCGTGTGTTATTTTCTTGAA+GGG - chr1_4:51950438-51950457 Msa0168900:intron 35.0%
GTCATTTAGGAAAATAGAGG+GGG - chr1_4:51950601-51950620 Msa0168900:intron 35.0%
TGAAAGTCACGTATTGTCTT+TGG - chr1_4:51950790-51950809 Msa0168900:intron 35.0%
CAATAGTATCTGAGAAGAAG+AGG - chr1_4:51951072-51951091 Msa0168900:intron 35.0%
AAAACAAAACGTGAGTGAGT+GGG - chr1_4:51951095-51951114 Msa0168900:intron 35.0%
!!! CAGTTGCTTTTGTTTACATG+AGG - chr1_4:51951119-51951138 Msa0168900:intron 35.0%
CCACTTTACTTTCATTACCA+AGG + chr1_4:51951362-51951381 None:intergenic 35.0%
!! CCTTGGTAATGAAAGTAAAG+TGG - chr1_4:51951359-51951378 Msa0168900:intron 35.0%
! CAAGTTTTCAGTCGATTGTT+AGG + chr1_4:51951402-51951421 None:intergenic 35.0%
!!! TTCCAGTTTTTAAGATGGGT+AGG - chr1_4:51951475-51951494 Msa0168900:intron 35.0%
!!! TCCAGTTTTTAAGATGGGTA+GGG - chr1_4:51951476-51951495 Msa0168900:intron 35.0%
AGTTTCCATAGAAAGTTCAG+CGG + chr1_4:51951682-51951701 None:intergenic 35.0%
AAACAATCAATGAGAAAGGG+GGG - chr1_4:51951752-51951771 Msa0168900:intron 35.0%
! GGAAAATTTCAAGGTATTCC+AGG - chr1_4:51951773-51951792 Msa0168900:intron 35.0%
AATTCTGTTGGAATTTGACC+TGG + chr1_4:51951794-51951813 None:intergenic 35.0%
ATCTTTGTTAGTTCCTGGAA+AGG + chr1_4:51951968-51951987 None:intergenic 35.0%
ACACTATCTTTGTTAGTTCC+TGG + chr1_4:51951973-51951992 None:intergenic 35.0%
! GTGTCTAAACAAGTTGAAGA+AGG - chr1_4:51951989-51952008 Msa0168900:intron 35.0%
! TAAACAAGTTGAAGAAGGGA+AGG - chr1_4:51951994-51952013 Msa0168900:intron 35.0%
TAACTTTCTTTGGACTGCTT+TGG - chr1_4:51952317-51952336 Msa0168900:intron 35.0%
! GGCATGTTCACTTCTTTTAT+AGG - chr1_4:51952338-51952357 Msa0168900:intron 35.0%
!! TTCTTTTATAGGTGGCTTTG+AGG - chr1_4:51952349-51952368 Msa0168900:intron 35.0%
TGAAGGGAGTTAAGAAAGAA+AGG + chr1_4:51952441-51952460 None:intergenic 35.0%
TGTTTATTGCAACTTGACGT+TGG + chr1_4:51952696-51952715 None:intergenic 35.0%
! AATTCACACTGATAGTGACT+AGG + chr1_4:51952777-51952796 None:intergenic 35.0%
! CCTTTTCTTTCTGTTTGTAG+AGG + chr1_4:51952934-51952953 None:intergenic 35.0%
CCTCTACAAACAGAAAGAAA+AGG - chr1_4:51952931-51952950 Msa0168900:intron 35.0%
AACATGGTATAGTGGCTAAA+AGG - chr1_4:51953432-51953451 Msa0168900:intron 35.0%
TTGTAATGCATCAGTCAAAC+AGG - chr1_4:51953606-51953625 Msa0168900:intron 35.0%
! CACATAAAATTGTGGTGATG+TGG + chr1_4:51953719-51953738 None:intergenic 35.0%
! CACATCACCACAATTTTATG+TGG - chr1_4:51953717-51953736 Msa0168900:intron 35.0%
TGCATTTAATGTCAACTCCA+AGG - chr1_4:51953753-51953772 Msa0168900:intron 35.0%
TAGTGATGTGACATTGATGT+GGG - chr1_4:51953822-51953841 Msa0168900:intron 35.0%
TGCCATGTCGCAAAATTTAA+TGG - chr1_4:51953877-51953896 Msa0168900:intron 35.0%
! CTCCATTAAATTTTGCGACA+TGG + chr1_4:51953882-51953901 None:intergenic 35.0%
CATGTCGCAAAATTTAATGG+AGG - chr1_4:51953880-51953899 Msa0168900:intron 35.0%
TTTCTTCACAGTTGCATCAT+TGG - chr1_4:51954404-51954423 Msa0168900:CDS 35.0%
AAGTAACATTTCTACGCTAC+AGG + chr1_4:51954445-51954464 None:intergenic 35.0%
! TTCTGTGTTTTCAGCACATA+TGG - chr1_4:51954571-51954590 Msa0168900:five_prime_UTR 35.0%
! TCTGTGTTTTCAGCACATAT+GGG - chr1_4:51954572-51954591 Msa0168900:five_prime_UTR 35.0%
!! TTTTGAAAGATGGAACGGAG+GGG + chr1_4:51946420-51946439 None:intergenic 40.0%
!!! GTTTTGAAAGATGGAACGGA+GGG + chr1_4:51946421-51946440 None:intergenic 40.0%
!! ATAGGTTGAAGAGCGTTTGA+TGG + chr1_4:51946490-51946509 None:intergenic 40.0%
!! AGAGAGCTTTAGAGTGACAT+AGG + chr1_4:51946508-51946527 None:intergenic 40.0%
!! TATGTCACTCTAAAGCTCTC+TGG - chr1_4:51946507-51946526 Msa0168900:intron 40.0%
! TTGTGGATTGCGGAAAATTG+TGG + chr1_4:51947371-51947390 None:intergenic 40.0%
CTAGTAACGGTAAAGAGCAA+TGG + chr1_4:51947439-51947458 None:intergenic 40.0%
ACAACGCGAAAAAACACCTA+AGG + chr1_4:51947495-51947514 None:intergenic 40.0%
TACCTAAGGAAATGCACCTA+TGG - chr1_4:51947624-51947643 Msa0168900:intron 40.0%
ACCTAAGGAAATGCACCTAT+GGG - chr1_4:51947625-51947644 Msa0168900:intron 40.0%
!! AGGAGTGCTTATTTGAGCAA+TGG + chr1_4:51947896-51947915 None:intergenic 40.0%
TCTCGCCATATGACAAATCA+AGG - chr1_4:51947935-51947954 Msa0168900:intron 40.0%
GAACCGTACAAATCATAACG+AGG + chr1_4:51948061-51948080 None:intergenic 40.0%
TAGTATACACAACTCAACGG+GGG + chr1_4:51948124-51948143 None:intergenic 40.0%
CTAGTATACACAACTCAACG+GGG + chr1_4:51948125-51948144 None:intergenic 40.0%
!! ATGTCTTATTTGGGACCGTA+CGG + chr1_4:51948175-51948194 None:intergenic 40.0%
GTCTATCAGATGTCAACTGA+GGG + chr1_4:51948395-51948414 None:intergenic 40.0%
CTCAGTTGACATCTGATAGA+CGG - chr1_4:51948394-51948413 Msa0168900:intron 40.0%
AGCTATCTGAGTTCCTTGTA+AGG - chr1_4:51948806-51948825 Msa0168900:intron 40.0%
GCTATCTGAGTTCCTTGTAA+GGG - chr1_4:51948807-51948826 Msa0168900:intron 40.0%
TAAATCCTAGTTGCCAGAGT+TGG + chr1_4:51949017-51949036 None:intergenic 40.0%
! AAGGTATTCCCTGTATTCAC+TGG - chr1_4:51949116-51949135 Msa0168900:intron 40.0%
AGATGATATCGCCTTAGACT+TGG - chr1_4:51949147-51949166 Msa0168900:intron 40.0%
TGAACAGAAGACCAAGTCTA+AGG + chr1_4:51949161-51949180 None:intergenic 40.0%
CCAATGCAGTATAGTCTTTG+GGG + chr1_4:51949192-51949211 None:intergenic 40.0%
GCCAATGCAGTATAGTCTTT+GGG + chr1_4:51949193-51949212 None:intergenic 40.0%
TGCCAATGCAGTATAGTCTT+TGG + chr1_4:51949194-51949213 None:intergenic 40.0%
GCCCAAATCTCATTGATACA+AGG + chr1_4:51949308-51949327 None:intergenic 40.0%
! ATCAGCTATCAGCTAGCTTA+TGG + chr1_4:51949350-51949369 None:intergenic 40.0%
ATTTAAAGAGACTTCAGGGG+AGG + chr1_4:51949487-51949506 None:intergenic 40.0%
CAATCACGGTAAGACAAAAG+TGG - chr1_4:51950043-51950062 Msa0168900:intron 40.0%
AAAGAAGTGATGCTTGGAAC+GGG - chr1_4:51950116-51950135 Msa0168900:intron 40.0%
GTTGGGCATCTTTCATCTTT+GGG + chr1_4:51950403-51950422 None:intergenic 40.0%
AAGGCCTGAATGAACAATGA+AGG - chr1_4:51950516-51950535 Msa0168900:intron 40.0%
TGTCTTTGACGGCAATGTAA+CGG - chr1_4:51950555-51950574 Msa0168900:intron 40.0%
! ATGTAACGGTTCTAACAGCA+AGG - chr1_4:51950569-51950588 Msa0168900:intron 40.0%
! TGTAACGGTTCTAACAGCAA+GGG - chr1_4:51950570-51950589 Msa0168900:intron 40.0%
!! AAGGGAGGTTTGTGTCATTT+AGG - chr1_4:51950588-51950607 Msa0168900:intron 40.0%
ATATTGATAGAGTTGAGGGG+AGG - chr1_4:51950634-51950653 Msa0168900:intron 40.0%
GAAAACAAAACGTGAGTGAG+TGG - chr1_4:51951094-51951113 Msa0168900:intron 40.0%
GGATGAAAACGTGATGTGTT+TGG + chr1_4:51951278-51951297 None:intergenic 40.0%
TTCATTACCAAGGCTGTGTT+TGG + chr1_4:51951352-51951371 None:intergenic 40.0%
TCCCTACCCATCTTAAAAAC+TGG + chr1_4:51951480-51951499 None:intergenic 40.0%
!! GTGAAGACAAGTACTGGTAA+TGG - chr1_4:51951520-51951539 Msa0168900:intron 40.0%
! ATTTTGCTCCTAACCTTGAG+GGG + chr1_4:51951653-51951672 None:intergenic 40.0%
! GATTTTGCTCCTAACCTTGA+GGG + chr1_4:51951654-51951673 None:intergenic 40.0%
CTCAAGGTTAGGAGCAAAAT+CGG - chr1_4:51951653-51951672 Msa0168900:intron 40.0%
AGAAAGGGGGGAAAATTTCA+AGG - chr1_4:51951764-51951783 Msa0168900:intron 40.0%
!! GAAAGGTATTACGGAAGACA+AGG + chr1_4:51952474-51952493 None:intergenic 40.0%
! CACTGTTGGAATTTTCTCAC+AGG - chr1_4:51952500-51952519 Msa0168900:intron 40.0%
AGATTTGTCTAGCGATTTGC+AGG - chr1_4:51952551-51952570 Msa0168900:CDS 40.0%
! ATCAGTGTGAATTTTCCGTG+AGG - chr1_4:51952784-51952803 Msa0168900:intron 40.0%
GGGAGAAGTTCACTGAAATT+GGG - chr1_4:51953285-51953304 Msa0168900:intron 40.0%
CACTGAAATTGGGTCCAATA+CGG - chr1_4:51953295-51953314 Msa0168900:intron 40.0%
! CACGTTAAATGAGCATTGTG+TGG - chr1_4:51953667-51953686 Msa0168900:intron 40.0%
!! TGGTGATGTGGCATTGATTT+GGG + chr1_4:51953707-51953726 None:intergenic 40.0%
CTAGTGATGTGACATTGATG+TGG - chr1_4:51953821-51953840 Msa0168900:intron 40.0%
GGGAAAAACTAGAAGTGATG+AGG + chr1_4:51954085-51954104 None:intergenic 40.0%
GTAACTTCTCCCTTTCTTTC+AGG - chr1_4:51954155-51954174 Msa0168900:intron 40.0%
TCAGCAACTCCTGAAAGAAA+GGG + chr1_4:51954167-51954186 None:intergenic 40.0%
AGGTGAGTTTGCATGCAATT+TGG - chr1_4:51954379-51954398 Msa0168900:CDS 40.0%
GGTGAGTTTGCATGCAATTT+GGG - chr1_4:51954380-51954399 Msa0168900:CDS 40.0%
CATTTCTACGCTACAGGAAT+AGG + chr1_4:51954439-51954458 None:intergenic 40.0%
!!! GGTTTTGAAAGATGGAACGG+AGG + chr1_4:51946422-51946441 None:intergenic 45.0%
!! AGAAGGGCTTTGGGAACAAT+TGG + chr1_4:51946447-51946466 None:intergenic 45.0%
TGTGCAGAAAGAAGGGCTTT+GGG + chr1_4:51946456-51946475 None:intergenic 45.0%
! AGAGGAGTGTGCAGAAAGAA+GGG + chr1_4:51946463-51946482 None:intergenic 45.0%
! AAGAGGAGTGTGCAGAAAGA+AGG + chr1_4:51946464-51946483 None:intergenic 45.0%
!! AGAGCGTTTGATGGTGAAAG+AGG + chr1_4:51946481-51946500 None:intergenic 45.0%
!! TAGAAAGGGAGTGTCTGCTA+CGG + chr1_4:51946533-51946552 None:intergenic 45.0%
AGCAGACACTCCCTTTCTAA+AGG - chr1_4:51946534-51946553 Msa0168900:intron 45.0%
GCAGACACTCCCTTTCTAAA+GGG - chr1_4:51946535-51946554 Msa0168900:intron 45.0%
TACCCAGAAAGGGATTTGTG+AGG - chr1_4:51946663-51946682 Msa0168900:intron 45.0%
ACCCAGAAAGGGATTTGTGA+GGG - chr1_4:51946664-51946683 Msa0168900:intron 45.0%
AAATAGCGGCTATAGCGTAG+CGG - chr1_4:51947333-51947352 Msa0168900:intron 45.0%
GGATTTGAGGAAATCATGGG+TGG - chr1_4:51947567-51947586 Msa0168900:intron 45.0%
TCCCATAGGTGCATTTCCTT+AGG + chr1_4:51947629-51947648 None:intergenic 45.0%
GCAATGGTCTTCAAGCTAAC+TGG + chr1_4:51947880-51947899 None:intergenic 45.0%
! TCCTGATGCCAGTTCACTTT+TGG - chr1_4:51947912-51947931 Msa0168900:intron 45.0%
ACCAAAAGTGAACTGGCATC+AGG + chr1_4:51947916-51947935 None:intergenic 45.0%
AGTATACACAACTCAACGGG+GGG + chr1_4:51948123-51948142 None:intergenic 45.0%
GGTATGACTCCCAATAACGA+TGG - chr1_4:51948348-51948367 Msa0168900:intron 45.0%
CGTCTATCAGATGTCAACTG+AGG + chr1_4:51948396-51948415 None:intergenic 45.0%
GTTGACATCTGATAGACGGA+AGG - chr1_4:51948398-51948417 Msa0168900:intron 45.0%
TCTAGACACTGCAGCAACAA+TGG + chr1_4:51948436-51948455 None:intergenic 45.0%
! GACTTCTTTTGCGAGCTTCA+AGG + chr1_4:51948859-51948878 None:intergenic 45.0%
GAAGCTCGCAAAAGAAGTCT+TGG - chr1_4:51948860-51948879 Msa0168900:intron 45.0%
!! AAAGAAGTCTTGGTGATGCC+TGG - chr1_4:51948870-51948889 Msa0168900:intron 45.0%
TCATCACAAGCGAGCTCTAT+AGG - chr1_4:51948975-51948994 Msa0168900:intron 45.0%
CTCTATAGGTGTGAAAGGTG+AGG - chr1_4:51948989-51949008 Msa0168900:intron 45.0%
CAGCTTAAGGTAGCCCAATA+AGG + chr1_4:51949096-51949115 None:intergenic 45.0%
ATTGGGCTACCTTAAGCTGA+AGG - chr1_4:51949097-51949116 Msa0168900:intron 45.0%
CAGGGAATACCTTCAGCTTA+AGG + chr1_4:51949109-51949128 None:intergenic 45.0%
CCCCAAAGACTATACTGCAT+TGG - chr1_4:51949189-51949208 Msa0168900:intron 45.0%
CTGAAAAGCTAGCTGATAGC+TGG - chr1_4:51949384-51949403 Msa0168900:intron 45.0%
GGTAGCTGATAGCTTATAGC+TGG - chr1_4:51949405-51949424 Msa0168900:intron 45.0%
! CGGTGTTAAGTTTGTAAGGG+AGG + chr1_4:51949580-51949599 None:intergenic 45.0%
! GGGGTTCTTGATTGGTGTTT+AGG - chr1_4:51950168-51950187 Msa0168900:intron 45.0%
TTTACTACTCGCCGTTGCTT+TGG + chr1_4:51950271-51950290 None:intergenic 45.0%
GGTCGCTTACATTATAGCCA+TGG + chr1_4:51950382-51950401 None:intergenic 45.0%
CGTTGGGCATCTTTCATCTT+TGG + chr1_4:51950404-51950423 None:intergenic 45.0%
AGATGAAAGATGCCCAACGA+TGG - chr1_4:51950405-51950424 Msa0168900:intron 45.0%
TGTGTTACCAAACACAGCCT+TGG - chr1_4:51951342-51951361 Msa0168900:intron 45.0%
! CACTAACCAAGCTTTGGCAA+TGG - chr1_4:51951432-51951451 Msa0168900:intron 45.0%
AGCAGTGTGAAGACAAGTAC+TGG - chr1_4:51951514-51951533 Msa0168900:intron 45.0%
ACCTTAGACTGGAACAGTGT+CGG - chr1_4:51951565-51951584 Msa0168900:intron 45.0%
CAATAGGAACAAACCCCTCA+AGG - chr1_4:51951637-51951656 Msa0168900:intron 45.0%
! CGATTTTGCTCCTAACCTTG+AGG + chr1_4:51951655-51951674 None:intergenic 45.0%
GGTATCCGCTGAACTTTCTA+TGG - chr1_4:51951674-51951693 Msa0168900:intron 45.0%
GGAGAGCAAAACCCTCAAAT+TGG + chr1_4:51952080-51952099 None:intergenic 45.0%
! TTTGAGGGTTTTGCTCTCCT+TGG - chr1_4:51952081-51952100 Msa0168900:intron 45.0%
GGGGAGAAGTTCACTGAAAT+TGG - chr1_4:51953284-51953303 Msa0168900:intron 45.0%
!! CTTTGGTGCCTTTGACTTGA+TGG - chr1_4:51953489-51953508 Msa0168900:intron 45.0%
GTCCTCGAAATTGTGAGCAT+CGG - chr1_4:51953536-51953555 Msa0168900:intron 45.0%
TACCGATGCTCACAATTTCG+AGG + chr1_4:51953541-51953560 None:intergenic 45.0%
TTCCTTACCTGTTGCGGTTA+GGG - chr1_4:51953632-51953651 Msa0168900:intron 45.0%
!! GCATTGATTTGGGATCCATG+TGG + chr1_4:51953697-51953716 None:intergenic 45.0%
!! GTGGTGATGTGGCATTGATT+TGG + chr1_4:51953708-51953727 None:intergenic 45.0%
GTCAGCAACTCCTGAAAGAA+AGG + chr1_4:51954168-51954187 None:intergenic 45.0%
!! AACTATATTAAAAATATTAA+AGG - chr1_4:51948727-51948746 Msa0168900:intron 5.0%
!! GTAATAAAAATAAAATAATA+AGG - chr1_4:51951150-51951169 Msa0168900:intron 5.0%
! ACAAGGCGTAGAGCATCTCA+TGG - chr1_4:51946371-51946390 Msa0168900:intron 50.0%
!! GGGTGTTGTTGGAGAGAAAG+AGG + chr1_4:51946400-51946419 None:intergenic 50.0%
!! GGGCTTTGGGAACAATTGGA+AGG + chr1_4:51946443-51946462 None:intergenic 50.0%
GTGTGCAGAAAGAAGGGCTT+TGG + chr1_4:51946457-51946476 None:intergenic 50.0%
GCCCTCACAAATCCCTTTCT+GGG + chr1_4:51946668-51946687 None:intergenic 50.0%
AGCCCTCACAAATCCCTTTC+TGG + chr1_4:51946669-51946688 None:intergenic 50.0%
TGGCGAGACCAAAAGTGAAC+TGG + chr1_4:51947923-51947942 None:intergenic 50.0%
TATACACAACTCAACGGGGG+GGG + chr1_4:51948121-51948140 None:intergenic 50.0%
GTATACACAACTCAACGGGG+GGG + chr1_4:51948122-51948141 None:intergenic 50.0%
CACTGCAGCAACAATGGAAG+TGG + chr1_4:51948430-51948449 None:intergenic 50.0%
!! AAGTCTTGGTGATGCCTGGA+AGG - chr1_4:51948874-51948893 Msa0168900:intron 50.0%
GCTCGCTTGTGATGATCAGT+TGG + chr1_4:51948970-51948989 None:intergenic 50.0%
GCGAGCTCTATAGGTGTGAA+AGG - chr1_4:51948984-51949003 Msa0168900:intron 50.0%
GAAAGGTGAGGAACCAACTC+TGG - chr1_4:51949001-51949020 Msa0168900:intron 50.0%
AGGAACCAACTCTGGCAACT+AGG - chr1_4:51949009-51949028 Msa0168900:intron 50.0%
CGACTGCGAAACCAAAGCAA+CGG - chr1_4:51950257-51950276 Msa0168900:intron 50.0%
! AACGGTTCTAACAGCAAGGG+AGG - chr1_4:51950573-51950592 Msa0168900:intron 50.0%
AGTCGATTGTTAGGCACGTG+AGG + chr1_4:51951393-51951412 None:intergenic 50.0%
TGAGCGCACTAACCAAGCTT+TGG - chr1_4:51951426-51951445 Msa0168900:intron 50.0%
! TGTGTGCCATTGCCAAAGCT+TGG + chr1_4:51951441-51951460 None:intergenic 50.0%
CAGCTGCTGAAACCTTAGAC+TGG - chr1_4:51951554-51951573 Msa0168900:intron 50.0%
TCCGACACTGTTCCAGTCTA+AGG + chr1_4:51951569-51951588 None:intergenic 50.0%
! TAGACTGGAACAGTGTCGGA+TGG - chr1_4:51951569-51951588 Msa0168900:intron 50.0%
GTGTCGGATGGAGAAAAGCA+AGG - chr1_4:51951581-51951600 Msa0168900:intron 50.0%
CGGATGGAGAAAAGCAAGGT+AGG - chr1_4:51951585-51951604 Msa0168900:intron 50.0%
GGAACAAACCCCTCAAGGTT+AGG - chr1_4:51951642-51951661 Msa0168900:intron 50.0%
AGGTCCTTCCTTACCTGTTG+CGG - chr1_4:51953626-51953645 Msa0168900:intron 50.0%
CTAACCGCAACAGGTAAGGA+AGG + chr1_4:51953633-51953652 None:intergenic 50.0%
CTTCCTTACCTGTTGCGGTT+AGG - chr1_4:51953631-51953650 Msa0168900:intron 50.0%
TCCTTACCTGTTGCGGTTAG+GGG - chr1_4:51953633-51953652 Msa0168900:intron 50.0%
TCATAACCCCTAACCGCAAC+AGG + chr1_4:51953642-51953661 None:intergenic 50.0%
GCATTGTGTGGTCTTCCACA+TGG - chr1_4:51953679-51953698 Msa0168900:intron 50.0%
!! ATGGAACGGAGGGGTGTTGT+TGG + chr1_4:51946411-51946430 None:intergenic 55.0%
ATACACAACTCAACGGGGGG+GGG + chr1_4:51948120-51948139 None:intergenic 55.0%
ATGCCCAACGATGGAGAGAG+AGG - chr1_4:51950414-51950433 Msa0168900:intron 55.0%
GCACCTCTCTCTCCATCGTT+GGG + chr1_4:51950420-51950439 None:intergenic 55.0%
GCTTTGGCAATGGCACACAG+AGG - chr1_4:51951442-51951461 Msa0168900:intron 55.0%
ACCCCTAACCGCAACAGGTA+AGG + chr1_4:51953637-51953656 None:intergenic 55.0%
TACACAACTCAACGGGGGGG+GGG + chr1_4:51948119-51948138 None:intergenic 60.0%
CGCACCTCTCTCTCCATCGT+TGG + chr1_4:51950421-51950440 None:intergenic 60.0%
GGCAATGGCACACAGAGGTG+AGG - chr1_4:51951447-51951466 Msa0168900:intron 60.0%
ACACAACTCAACGGGGGGGG+GGG + chr1_4:51948118-51948137 None:intergenic 65.0%
ACAACTCAACGGGGGGGGGG+GGG + chr1_4:51948116-51948135 None:intergenic 70.0%
CACAACTCAACGGGGGGGGG+GGG + chr1_4:51948117-51948136 None:intergenic 70.0%
AACTCAACGGGGGGGGGGGG+GGG + chr1_4:51948114-51948133 None:intergenic 75.0%
CAACTCAACGGGGGGGGGGG+GGG + chr1_4:51948115-51948134 None:intergenic 75.0%
! ACTCAACGGGGGGGGGGGGG+GGG + chr1_4:51948113-51948132 None:intergenic 80.0%
! TCAACGGGGGGGGGGGGGGG+GGG + chr1_4:51948111-51948130 None:intergenic 85.0%
! CTCAACGGGGGGGGGGGGGG+GGG + chr1_4:51948112-51948131 None:intergenic 85.0%
! AACGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948109-51948128 None:intergenic 90.0%
! CAACGGGGGGGGGGGGGGGG+GGG + chr1_4:51948110-51948129 None:intergenic 90.0%
! ACGGGGGGGGGGGGGGGGGG+GGG + chr1_4:51948108-51948127 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51946318 51954613 51946318 ID=Msa0168900;Name=Msa0168900
chr1_4 mRNA 51946318 51954613 51946318 ID=Msa0168900-mRNA-1;Parent=Msa0168900;Name=Msa0168900-mRNA-1;_AED=0.25;_eAED=0.25;_QI=72|0.88|0.9|1|1|1|10|0|273
chr1_4 exon 51946318 51946368 51946318 ID=Msa0168900-mRNA-1:exon:15308;Parent=Msa0168900-mRNA-1
chr1_4 exon 51947979 51948035 51947979 ID=Msa0168900-mRNA-1:exon:15307;Parent=Msa0168900-mRNA-1
chr1_4 exon 51948359 51948409 51948359 ID=Msa0168900-mRNA-1:exon:15306;Parent=Msa0168900-mRNA-1
chr1_4 exon 51948515 51948571 51948515 ID=Msa0168900-mRNA-1:exon:15305;Parent=Msa0168900-mRNA-1
chr1_4 exon 51948916 51948957 51948916 ID=Msa0168900-mRNA-1:exon:15304;Parent=Msa0168900-mRNA-1
chr1_4 exon 51952512 51952623 51952512 ID=Msa0168900-mRNA-1:exon:15303;Parent=Msa0168900-mRNA-1
chr1_4 exon 51952975 51953072 51952975 ID=Msa0168900-mRNA-1:exon:15302;Parent=Msa0168900-mRNA-1
chr1_4 exon 51954014 51954109 51954014 ID=Msa0168900-mRNA-1:exon:15301;Parent=Msa0168900-mRNA-1
chr1_4 exon 51954192 51954261 51954192 ID=Msa0168900-mRNA-1:exon:15300;Parent=Msa0168900-mRNA-1
chr1_4 exon 51954354 51954613 51954354 ID=Msa0168900-mRNA-1:exon:15299;Parent=Msa0168900-mRNA-1
chr1_4 five_prime_UTR 51954542 51954613 51954542 ID=Msa0168900-mRNA-1:five_prime_utr;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51954354 51954541 51954354 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51954192 51954261 51954192 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51954014 51954109 51954014 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51952975 51953072 51952975 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51952512 51952623 51952512 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51948916 51948957 51948916 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51948515 51948571 51948515 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51948359 51948409 51948359 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51947979 51948035 51947979 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
chr1_4 CDS 51946318 51946368 51946318 ID=Msa0168900-mRNA-1:cds;Parent=Msa0168900-mRNA-1
Gene Sequence

>Msa0168900

ATGGCAACCTCTTTCTCTCCAACAACACCCCTCCGTTCCATCTTTCAAAACCTTCCAATTGTTCCCAAAGCCCTTCTTTCTGCACACTCCTCTTTCACCATCAAACGCTCTTCAACCTATGTCACTCTAAAGCTCTCTGGCCGTAGCAGACACTCCCTTTCTAAAGGGTTGTTGACATTTCATAGAAGAAAGGGATTTGTGAGGGCTGCTACTATTGAAGAAATTGAAGCTGAAAAAGCATCTATTGAGAATGATGTTAAAAGTAGGATGGAAAGAACTCTTGACAATGTTAGGACTAATTTCAGTTCTATAAGAACTGGGAGAGCAACCCCGTCTATGCTTGACAAAATTGAGGTGGAATACTATGGATCTCCAGTTAGCTTGAAGACCATTGCTCAAATAAGCACTCCTGATGCCAGTTCACTTTTGGTCTCGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCTATAGTTAACTCTGATGTTGGTATGACTCCCAATAACGATGGAGAAGTGATACGGTTAAGTATCCCTCAGTTGACATCTGATAGACGGAAGGAACTAACAAAGATAGTGTCTAAACAAGTTGAAGAAGGGAAGGTGGCTTTGAGGAACATAAGAAGAGACGCTTTGAAAGCTTATGAAAAACTTGAAAAGGATAAGAAGCTCTCAGAAGATAATGTAAAAGATTTGTCTAGCGATTTGCAGAAGCTGACTGATGATTATATAAAGAAGGTTGATGCCCTCTACAAACAGAAAGAAAAGCTCAGGACTTCTGTGTTTTCAGCACATATGGGTGTTGAAGTGAAATTTTGA

Protein sequence

>Msa0168900

MATSFSPTTPLRSIFQNLPIVPKALLSAHSSFTIKRSSTYVTLKLSGRSRHSLSKGLLTFHRRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVRTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKLRTSVFSAHMGVEVKF*