AlfalfaGEDB | Msa0629980

M. sativa cultivar zhongmu-4 / Msa0629980

KEGG: K14684
GO: GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006091 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009765 GO:0009941 GO:0009987 GO:0010117 GO:0010206 GO:0015075 GO:0015215 GO:0015216 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0015979 GO:0016020 GO:0016021 GO:0019538 GO:0019684 GO:0019866 GO:0022857 GO:0030091 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901564 GO:1901679
PFAM: PF00153.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629980	XP_039689329.1	91.053	380	24	1	1	370	1	380	0.0	656

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629980	sp\|O65023\|EAAC_ARATH	63.158	380	114	3	6	365	4	377	1.21e-161	461

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012460	Msa0629980	0.829274	5.640886e-55	-8.615850e-47
Msa0012780	Msa0629980	-0.808428	3.111817e-50	-8.615850e-47
Msa0017130	Msa0629980	0.811888	5.587734e-51	-8.615850e-47
Msa0020630	Msa0629980	0.815634	8.361032e-52	-8.615850e-47
Msa0028950	Msa0629980	0.836678	8.131322e-57	-8.615850e-47
Msa0030400	Msa0629980	0.856285	3.567026e-62	-8.615850e-47
Msa0030730	Msa0629980	0.805482	1.306864e-49	-8.615850e-47
Msa0040410	Msa0629980	0.826199	3.093067e-54	-8.615850e-47
Msa0040550	Msa0629980	-0.814597	1.420628e-51	-8.615850e-47
Msa0042390	Msa0629980	0.816464	5.456620e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629980	MtrunA17_Chr4g0006851	91.053	380	24	1	1	370	1	380	0.0	656
Msa0629980	MtrunA17_Chr7g0242311	72.632	380	86	5	1	367	1	375	0.0	521
Msa0629980	MtrunA17_Chr4g0063561	33.803	284	160	8	89	352	123	398	1.60e-44	158
Msa0629980	MtrunA17_Chr7g0240341	32.542	295	169	7	90	354	26	320	1.50e-43	153
Msa0629980	MtrunA17_Chr3g0135861	31.392	309	165	6	82	349	28	330	8.46e-41	147
Msa0629980	MtrunA17_Chr1g0149111	32.746	284	155	7	89	348	139	410	2.44e-39	144
Msa0629980	MtrunA17_Chr6g0488081	30.000	320	167	7	65	345	2	303	3.08e-39	142
Msa0629980	MtrunA17_Chr3g0137941	32.168	286	162	9	91	354	124	399	2.07e-37	139
Msa0629980	MtrunA17_Chr3g0137941	30.688	189	104	6	87	257	214	393	6.08e-15	75.5
Msa0629980	MtrunA17_Chr8g0347451	27.762	353	178	8	48	349	28	354	3.08e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629980	AT3G51870.1	63.158	380	114	3	6	365	4	377	1.23e-162	461
Msa0629980	AT5G01500.1	69.767	344	82	2	38	365	68	405	2.02e-158	451
Msa0629980	AT2G37890.1	33.218	289	163	7	89	348	45	332	1.09e-41	149
Msa0629980	AT2G37890.1	28.646	192	110	6	89	259	152	337	1.19e-12	68.6
Msa0629980	AT4G26180.1	30.793	328	179	7	77	364	9	328	4.91e-41	147
Msa0629980	AT3G55640.1	34.797	296	153	9	84	345	33	322	6.46e-41	147
Msa0629980	AT3G55640.4	34.797	296	153	9	84	345	33	322	6.46e-41	147
Msa0629980	AT4G32400.1	32.404	287	164	9	89	354	114	391	1.51e-40	147
Msa0629980	AT4G32400.1	28.643	199	116	6	82	263	202	391	4.07e-14	73.6
Msa0629980	AT1G14560.1	30.169	295	160	4	100	354	38	326	1.17e-37	138

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Find 125 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAATTCCCACAACTAA+TGG	0.376764	4_3:+11505939	None:intergenic
AAATTTACAGAAAATATTCA+AGG	0.460729	4_3:-11507517	Msa0629980:intron
AACGACGTCGTTAGAGGTGG+TGG	0.529351	4_3:+11509969	None:intergenic
AACGATGAGCTCTATGTTGT+CGG	0.415561	4_3:-11507490	Msa0629980:CDS
AAGAAGCTGAGCCGGCGTCG+GGG	0.667870	4_3:+11509831	None:intergenic
AAGAAGGCATTATAGGTTAC+TGG	0.366199	4_3:-11507770	Msa0629980:CDS
AAGAGATGCTGAAAGCACGG+CGG	0.775581	4_3:+11506821	None:intergenic
AAGAGCTGAACAGCACTATA+AGG	0.384778	4_3:+11507630	None:intergenic
AAGCATTGGGCACAAATCCT+CGG	0.546969	4_3:+11506427	None:intergenic
AAGGATAAGTTTGATGGTTT+TGG	0.254529	4_3:+11510047	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTCATAAGGATAAGTTTGA+TGG	+	chr4_3:11505806-11505825	None:intergenic	30.0%
AGTTTATTGATATACACCGT+CGG	-	chr4_3:11506319-11506338	Msa0629980:intron	30.0%
TTCAACCACATTAAATGATG+TGG	+	chr4_3:11506496-11506515	None:intergenic	30.0%
GTTTAATGGAAGTAAACTGA+CGG	-	chr4_3:11506624-11506643	Msa0629980:intron	30.0%
AATTGAAGACTTCATTTGGT+CGG	+	chr4_3:11507105-11507124	None:intergenic	30.0%
AAGGAATTGAAGACTTCATT+TGG	+	chr4_3:11507109-11507128	None:intergenic	30.0%
GGTTGAGATAAAAATAGATG+TGG	+	chr4_3:11507309-11507328	None:intergenic	30.0%
GGAGTTACAATAATACACAA+GGG	+	chr4_3:11507335-11507354	None:intergenic	30.0%
TGGAGTTACAATAATACACA+AGG	+	chr4_3:11507336-11507355	None:intergenic	30.0%
GAAATCATGAAATGCAAGTT+GGG	+	chr4_3:11507731-11507750	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	11505721	11510145	11505721	ID=Msa0629980;Name=Msa0629980
chr4_3	mRNA	11505721	11510145	11505721	ID=Msa0629980-mRNA-1;Parent=Msa0629980;Name=Msa0629980-mRNA-1;_AED=0.18;_eAED=0.18;_QI=99\|0.88\|0.9\|1\|1\|1\|10\|293\|370
chr4_3	exon	11505721	11506122	11505721	ID=Msa0629980-mRNA-1:exon:3469;Parent=Msa0629980-mRNA-1
chr4_3	exon	11506405	11506483	11506405	ID=Msa0629980-mRNA-1:exon:3468;Parent=Msa0629980-mRNA-1
chr4_3	exon	11506730	11506899	11506730	ID=Msa0629980-mRNA-1:exon:3467;Parent=Msa0629980-mRNA-1
chr4_3	exon	11506997	11507109	11506997	ID=Msa0629980-mRNA-1:exon:3466;Parent=Msa0629980-mRNA-1
chr4_3	exon	11507184	11507252	11507184	ID=Msa0629980-mRNA-1:exon:3465;Parent=Msa0629980-mRNA-1
chr4_3	exon	11507476	11507529	11507476	ID=Msa0629980-mRNA-1:exon:3464;Parent=Msa0629980-mRNA-1
chr4_3	exon	11507611	11507667	11507611	ID=Msa0629980-mRNA-1:exon:3463;Parent=Msa0629980-mRNA-1
chr4_3	exon	11507752	11507814	11507752	ID=Msa0629980-mRNA-1:exon:3462;Parent=Msa0629980-mRNA-1
chr4_3	exon	11509563	11509619	11509563	ID=Msa0629980-mRNA-1:exon:3461;Parent=Msa0629980-mRNA-1
chr4_3	exon	11509705	11510145	11509705	ID=Msa0629980-mRNA-1:exon:3460;Parent=Msa0629980-mRNA-1
chr4_3	five_prime_UTR	11510047	11510145	11510047	ID=Msa0629980-mRNA-1:five_prime_utr;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11509705	11510046	11509705	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11509563	11509619	11509563	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11507752	11507814	11507752	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11507611	11507667	11507611	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11507476	11507529	11507476	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11507184	11507252	11507184	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11506997	11507109	11506997	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11506730	11506899	11506730	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11506405	11506483	11506405	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	CDS	11506014	11506122	11506014	ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3	three_prime_UTR	11505721	11506013	11505721	ID=Msa0629980-mRNA-1:three_prime_utr;Parent=Msa0629980-mRNA-1

Gene Sequence

>Msa0629980

ATGACAGACTCAACGAACAAAACCGTCGCCACGTGGCGTAACATCCCCAATTTAACCACCACCTCTAACGACGTCGTTTCACCCAACCACCTCTTCAACAACTCCACCTTCACTTTCACCGACGCAACCACCACCATTCCTTCCAAATTCGCCACCCGCTCCACCTCCCAAACCAAACCGAACAACGAATTCGCCCCGACGCCGGCTCAGCTTCTTAACCACCCGATCGCCGTCGTCGCACTTGTTCCCAAAGATGCTGCATTGTTTCTCGCTGGTGCTATTGCCGGAGCTGCTGCTAAAACCGTCACTGCTCCACTTGATCGAATCAAACTTCTCATGCAGACTCATGGAGTGCGGATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTCATTGAGGCCATATCAATGATAGGGAAGGAAGAAGGCATTATAGGTTACTGGAAGGGTAACCTACCACAGGTGATTAGGGTTATACCTTATAGTGCTGTTCAGCTCTTTGCTTATGAAATTTATAAGAAAATATTCAAGGAAAAAACGATGAGCTCTATGTTGTCGGAAGACTTGCAGCAGATAACTTACCCTTTAGATGTCCTGAGATTACGATTAGCTGTTGAACCTGGGTGTCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAGAGAGGAAGGTTTTGCTTCTTTCTACTACGGCCTTGGTCCTTCTCTTATCGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACCGCCGTGCTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGACACAGTTCGAAGACAGATGCAACTGAAGGGTACACCTTATAAGACAGTATTAGATGCCATTTCAGGTATTGTGGCACAAGATGGAGTTATTGGCTTGTACCGAGGATTTGTGCCCAATGCTTTAAAAAACCTACCAAACAGCAGCATCAGGCTTACAACATATGACATTGTCAAACGCCTGATTGCTGCTAGTGAGAAGGAGTTTCAAACAATTGCAGAGGAAAACCGCAACAAACTAAAGAAATGCCCATAA

Protein sequence

>Msa0629980

MTDSTNKTVATWRNIPNLTTTSNDVVSPNHLFNNSTFTFTDATTTIPSKFATRSTSQTKPNNEFAPTPAQLLNHPIAVVALVPKDAALFLAGAIAGAAAKTVTAPLDRIKLLMQTHGVRIGQESAKKTIGFIEAISMIGKEEGIIGYWKGNLPQVIRVIPYSAVQLFAYEIYKKIFKEKTMSSMLSEDLQQITYPLDVLRLRLAVEPGCRTMTEVALSMVREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVIGLYRGFVPNALKNLPNSSIRLTTYDIVKRLIAASEKEFQTIAEENRNKLKKCP*