AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629980 MtrunA17_Chr4g0006851 91.053 380 24 1 1 370 1 380 0.0 656
Msa0629980 MtrunA17_Chr7g0242311 72.632 380 86 5 1 367 1 375 0.0 521
Msa0629980 MtrunA17_Chr4g0063561 33.803 284 160 8 89 352 123 398 1.60e-44 158
Msa0629980 MtrunA17_Chr7g0240341 32.542 295 169 7 90 354 26 320 1.50e-43 153
Msa0629980 MtrunA17_Chr3g0135861 31.392 309 165 6 82 349 28 330 8.46e-41 147
Msa0629980 MtrunA17_Chr1g0149111 32.746 284 155 7 89 348 139 410 2.44e-39 144
Msa0629980 MtrunA17_Chr6g0488081 30.000 320 167 7 65 345 2 303 3.08e-39 142
Msa0629980 MtrunA17_Chr3g0137941 32.168 286 162 9 91 354 124 399 2.07e-37 139
Msa0629980 MtrunA17_Chr3g0137941 30.688 189 104 6 87 257 214 393 6.08e-15 75.5
Msa0629980 MtrunA17_Chr8g0347451 27.762 353 178 8 48 349 28 354 3.08e-37 137
Msa0629980 MtrunA17_Chr5g0396801 29.773 309 162 8 89 349 38 339 1.30e-36 135
Msa0629980 MtrunA17_Chr3g0131501 28.947 304 173 9 76 346 185 478 2.70e-35 134
Msa0629980 MtrunA17_Chr3g0131501 29.474 190 111 3 86 257 296 480 1.40e-16 80.9
Msa0629980 MtrunA17_Chr8g0385571 30.070 286 160 8 89 346 227 500 4.37e-35 134
Msa0629980 MtrunA17_Chr8g0385571 30.000 190 110 3 86 257 318 502 5.02e-18 85.5
Msa0629980 MtrunA17_Chr2g0296061 28.155 309 160 8 91 343 17 319 6.30e-35 130
Msa0629980 MtrunA17_Chr2g0296061 26.904 197 118 5 192 362 28 224 7.51e-14 71.6
Msa0629980 MtrunA17_Chr5g0436041 33.103 290 164 7 89 349 34 322 1.20e-33 127
Msa0629980 MtrunA17_Chr7g0252401 31.228 285 155 11 89 346 207 477 2.48e-33 129
Msa0629980 MtrunA17_Chr7g0252401 29.670 182 110 2 89 257 303 479 1.77e-19 89.7
Msa0629980 MtrunA17_Chr4g0067231 27.778 306 169 8 91 344 16 321 5.22e-33 125
Msa0629980 MtrunA17_Chr4g0067231 28.000 200 115 6 192 362 27 226 6.51e-16 77.8
Msa0629980 MtrunA17_Chr3g0115801 31.399 293 153 8 91 345 118 400 7.24e-31 121
Msa0629980 MtrunA17_Chr3g0115801 26.857 175 122 3 195 364 132 305 1.62e-12 68.2
Msa0629980 MtrunA17_Chr3g0135801 29.897 291 170 8 89 348 34 321 5.89e-30 117
Msa0629980 MtrunA17_Chr8g0382201 29.831 295 155 10 91 345 197 479 1.03e-28 116
Msa0629980 MtrunA17_Chr4g0000261 26.599 297 172 8 89 348 66 353 2.89e-26 107
Msa0629980 MtrunA17_Chr4g0000261 23.502 217 140 4 152 346 42 254 1.94e-12 67.8
Msa0629980 MtrunA17_Chr8g0393031 28.322 286 171 11 94 347 20 303 2.45e-25 104
Msa0629980 MtrunA17_Chr6g0488341 28.063 253 131 6 134 354 4 237 5.73e-24 99.0
Msa0629980 MtrunA17_Chr4g0040341 29.930 284 166 9 89 342 75 355 6.09e-24 101
Msa0629980 MtrunA17_Chr8g0352031 28.904 301 178 10 75 342 52 349 1.13e-23 100
Msa0629980 MtrunA17_Chr7g0269701 28.276 290 173 10 91 350 24 308 1.82e-23 99.4
Msa0629980 MtrunA17_Chr2g0328891 27.246 345 207 12 45 348 11 352 3.76e-21 93.6
Msa0629980 MtrunA17_Chr1g0195101 25.448 279 175 10 101 350 31 305 1.87e-20 90.9
Msa0629980 MtrunA17_Chr5g0423111 24.579 297 183 8 101 367 33 318 1.02e-19 89.4
Msa0629980 MtrunA17_Chr4g0008061 24.055 291 188 8 89 355 15 296 5.62e-19 86.3
Msa0629980 MtrunA17_Chr7g0241521 23.368 291 190 8 89 355 17 298 8.33e-19 85.9
Msa0629980 MtrunA17_Chr5g0431531 25.532 282 184 6 88 348 38 314 4.69e-18 84.0
Msa0629980 MtrunA17_Chr8g0386871 25.357 280 177 7 90 349 321 588 1.18e-15 78.6
Msa0629980 MtrunA17_Chr8g0386871 26.554 177 111 7 194 358 335 504 9.55e-11 63.2
Msa0629980 MtrunA17_Chr3g0086811 23.203 306 181 9 89 345 28 328 1.29e-15 77.4
Msa0629980 MtrunA17_Chr3g0103681 24.126 286 189 9 89 348 15 298 4.30e-15 75.1
Msa0629980 MtrunA17_Chr8g0372531 25.704 284 173 10 105 353 30 310 5.33e-15 75.1
Msa0629980 MtrunA17_Chr6g0463041 30.986 142 82 2 224 354 110 246 8.50e-15 73.6
Msa0629980 MtrunA17_Chr3g0133111 23.607 305 188 8 89 348 6 310 8.37e-13 68.6
Msa0629980 MtrunA17_Chr4g0004571 23.973 292 183 9 89 352 16 296 9.37e-13 68.2
Msa0629980 MtrunA17_Chr8g0343381 26.554 177 105 3 194 348 48 221 2.08e-12 67.8
Msa0629980 MtrunA17_Chr4g0028531 20.339 295 196 8 90 355 23 307 1.13e-11 65.1
Msa0629980 MtrunA17_Chr5g0412401 26.203 187 119 3 91 259 136 321 1.68e-11 64.7
Msa0629980 MtrunA17_Chr2g0293621 24.232 293 179 9 92 347 32 318 1.98e-11 64.7
Msa0629980 MtrunA17_Chr3g0136041 26.519 181 110 2 194 351 47 227 2.70e-11 64.3
Msa0629980 MtrunA17_Chr8g0383321 26.630 184 111 4 91 260 135 308 5.50e-11 63.2
Msa0629980 MtrunA17_Chr8g0366791 27.513 189 117 3 89 257 109 297 7.05e-11 62.8
Msa0629980 MtrunA17_Chr1g0201361 22.936 327 206 11 40 349 8 305 7.85e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629980 AT3G51870.1 63.158 380 114 3 6 365 4 377 1.23e-162 461
Msa0629980 AT5G01500.1 69.767 344 82 2 38 365 68 405 2.02e-158 451
Msa0629980 AT2G37890.1 33.218 289 163 7 89 348 45 332 1.09e-41 149
Msa0629980 AT2G37890.1 28.646 192 110 6 89 259 152 337 1.19e-12 68.6
Msa0629980 AT4G26180.1 30.793 328 179 7 77 364 9 328 4.91e-41 147
Msa0629980 AT3G55640.1 34.797 296 153 9 84 345 33 322 6.46e-41 147
Msa0629980 AT3G55640.4 34.797 296 153 9 84 345 33 322 6.46e-41 147
Msa0629980 AT4G32400.1 32.404 287 164 9 89 354 114 391 1.51e-40 147
Msa0629980 AT4G32400.1 28.643 199 116 6 82 263 202 391 4.07e-14 73.6
Msa0629980 AT1G14560.1 30.169 295 160 4 100 354 38 326 1.17e-37 138
Msa0629980 AT4G01100.1 29.167 312 162 9 89 349 42 345 1.34e-37 139
Msa0629980 AT4G01100.1 28.708 209 106 6 91 262 147 349 6.85e-14 72.4
Msa0629980 AT4G01100.2 28.834 326 159 8 89 349 42 359 1.37e-37 139
Msa0629980 AT4G01100.2 28.708 209 106 6 91 262 161 363 8.01e-14 72.4
Msa0629980 AT3G53940.1 32.069 290 167 7 89 349 73 361 1.83e-37 139
Msa0629980 AT4G26180.2 31.034 290 155 6 77 329 9 290 1.32e-35 132
Msa0629980 AT4G01100.3 28.763 299 160 8 99 349 2 295 2.40e-34 129
Msa0629980 AT4G01100.3 28.708 209 106 6 91 262 97 299 3.60e-14 72.8
Msa0629980 AT1G14560.2 30.741 270 141 4 100 329 38 301 3.07e-34 129
Msa0629980 AT5G51050.1 32.203 295 149 10 84 346 218 493 1.54e-33 130
Msa0629980 AT5G51050.1 29.121 182 112 3 89 257 318 495 1.46e-16 81.3
Msa0629980 AT5G48970.1 28.431 306 166 8 91 343 24 329 1.86e-33 127
Msa0629980 AT5G48970.1 29.891 184 104 5 190 348 33 216 3.43e-17 82.0
Msa0629980 AT5G61810.2 31.095 283 161 7 88 349 64 333 3.03e-33 127
Msa0629980 AT5G61810.1 31.095 283 161 7 88 349 207 476 2.87e-32 126
Msa0629980 AT3G21390.1 27.900 319 166 10 91 351 21 333 3.37e-32 124
Msa0629980 AT3G21390.1 26.842 190 116 4 190 356 30 219 1.52e-15 77.4
Msa0629980 AT3G21390.2 27.900 319 166 10 91 351 43 355 9.33e-32 123
Msa0629980 AT3G21390.2 26.842 190 116 4 190 356 52 241 2.77e-15 76.6
Msa0629980 AT3G20240.1 28.852 305 171 7 84 351 47 342 9.33e-31 120
Msa0629980 AT5G64970.1 28.716 296 157 9 91 345 137 419 8.90e-29 116
Msa0629980 AT5G56450.1 27.797 295 175 8 89 348 34 325 5.99e-28 112
Msa0629980 AT5G64970.2 27.609 297 161 9 90 345 12 295 6.59e-28 111
Msa0629980 AT3G55640.2 35.938 192 101 5 84 254 33 223 1.28e-27 109
Msa0629980 AT3G55640.3 35.938 192 101 5 84 254 33 223 1.28e-27 109
Msa0629980 AT5G07320.1 29.412 272 158 8 99 349 219 477 7.96e-27 111
Msa0629980 AT5G07320.1 27.473 182 114 3 89 257 300 476 1.12e-15 78.6
Msa0629980 AT5G64970.3 28.571 280 146 9 91 329 137 403 2.89e-25 106
Msa0629980 AT5G48970.2 26.848 257 143 7 132 343 2 258 3.50e-25 103
Msa0629980 AT5G48970.2 31.724 145 91 3 212 348 1 145 5.26e-16 77.8
Msa0629980 AT1G78180.1 28.571 294 160 9 91 345 130 412 2.88e-24 103
Msa0629980 AT3G53940.2 33.155 187 103 4 89 254 73 258 3.12e-24 101
Msa0629980 AT4G28390.1 28.374 289 176 9 89 348 83 369 1.45e-23 100
Msa0629980 AT4G28390.2 28.374 289 176 9 89 348 83 369 1.45e-23 100
Msa0629980 AT3G08580.2 25.806 341 211 10 47 348 34 371 1.80e-23 100
Msa0629980 AT3G08580.1 25.806 341 211 10 47 348 34 371 1.80e-23 100
Msa0629980 AT5G13490.1 26.897 290 180 8 89 348 88 375 1.28e-22 98.6
Msa0629980 AT5G13490.2 26.897 290 180 8 89 348 88 375 1.28e-22 98.6
Msa0629980 AT1G14560.3 27.876 226 123 3 169 354 3 228 2.37e-21 92.0
Msa0629980 AT1G14560.3 28.141 199 112 5 89 257 25 222 3.54e-13 68.9
Msa0629980 AT5G17400.1 28.155 309 175 13 76 347 1 299 5.62e-21 92.4
Msa0629980 AT1G25380.1 26.619 278 176 6 97 347 29 305 6.88e-21 93.2
Msa0629980 AT1G25380.2 26.619 278 176 6 97 347 29 305 6.88e-21 93.2
Msa0629980 AT2G30160.1 26.380 326 206 9 51 348 2 321 2.97e-20 90.9
Msa0629980 AT2G30160.1 22.599 177 133 1 194 366 57 233 4.70e-12 67.0
Msa0629980 AT2G47490.1 27.273 275 170 9 101 348 29 300 1.12e-19 89.0
Msa0629980 AT1G07030.1 26.606 327 202 9 44 348 6 316 9.83e-19 86.7
Msa0629980 AT3G54110.1 23.755 261 176 6 89 326 15 275 4.40e-17 81.3
Msa0629980 AT5G58970.1 23.675 283 191 6 89 347 16 297 2.41e-16 79.3
Msa0629980 AT1G14140.1 24.579 297 179 10 90 351 17 303 8.45e-15 74.7
Msa0629980 AT5G66380.1 27.055 292 176 10 91 348 12 300 1.58e-14 73.9
Msa0629980 AT4G11440.1 24.823 282 182 10 90 349 331 604 3.62e-13 71.2
Msa0629980 AT4G11440.2 24.823 282 182 10 90 349 331 604 3.62e-13 71.2
Msa0629980 AT5G26200.1 24.621 264 151 7 138 353 79 342 1.20e-12 68.6
Msa0629980 AT5G26200.1 26.776 183 112 4 194 354 54 236 6.67e-12 66.6
Msa0629980 AT4G39460.2 28.372 215 118 8 64 260 118 314 1.49e-12 68.2
Msa0629980 AT4G39460.1 28.372 215 118 8 64 260 118 314 1.49e-12 68.2
Msa0629980 AT4G39460.3 28.372 215 118 8 64 260 118 314 1.49e-12 68.2
Msa0629980 AT4G03115.3 24.254 268 181 8 72 322 53 315 2.58e-12 67.8
Msa0629980 AT4G03115.1 24.254 268 181 8 72 322 21 283 2.81e-12 67.4
Msa0629980 AT2G22500.1 23.841 302 187 8 89 347 6 307 5.32e-12 66.6
Msa0629980 AT2G26360.1 22.289 332 216 11 40 346 60 374 9.93e-12 66.2
Msa0629980 AT5G01340.1 22.222 288 187 8 90 347 18 298 1.21e-11 65.5
Msa0629980 AT1G34065.1 27.225 191 115 5 87 263 161 341 1.69e-11 65.5
Msa0629980 AT1G34065.2 27.225 191 115 5 87 263 154 334 1.97e-11 65.1
Msa0629980 AT1G72820.1 27.326 172 108 3 194 348 46 217 5.55e-11 63.9
Msa0629980 AT1G72820.2 27.326 172 108 3 194 348 46 217 5.55e-11 63.9

Find 125 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCACCATCATTGATTA+TGG 0.166015 4_3:+11505997 None:intergenic
GGTGGAGCGGGTGGCGAATT+TGG 0.206702 4_3:+11509882 None:intergenic
GTTAGAGGTGGTGGTTAAAT+TGG 0.220101 4_3:+11509978 None:intergenic
TTCCTTCCCTATCATTGATA+TGG 0.235134 4_3:+11507791 None:intergenic
GTGGCACAAGATGGAGTTAT+TGG 0.246853 4_3:-11506456 Msa0629980:CDS
AAGGATAAGTTTGATGGTTT+TGG 0.254529 4_3:+11510047 None:intergenic
ACAGTATTAGATGCCATTTC+AGG 0.261132 4_3:-11506729 Msa0629980:intron
GTAGGACTCAAGTTTGTTCT+AGG 0.268017 4_3:-11505868 Msa0629980:three_prime_UTR
GGCCTTGGTCCTTCTCTTAT+CGG 0.280665 4_3:-11507039 Msa0629980:CDS
GAGAAACAATGCAGCATCTT+TGG 0.280947 4_3:+11509777 None:intergenic
GCATCTAATACTGTCTTATA+AGG 0.297227 4_3:+11506738 None:intergenic
CTTTGCTTATGAAATTTATA+AGG 0.302156 4_3:-11507610 Msa0629980:intron
GGGAAGGAAGAAGGCATTAT+AGG 0.305435 4_3:-11507777 Msa0629980:CDS
TTCGTTGTTCGGTTTGGTTT+GGG 0.312231 4_3:+11509858 None:intergenic
ATTCGTTGTTCGGTTTGGTT+TGG 0.334224 4_3:+11509857 None:intergenic
TTAGAGGTGGTGGTTAAATT+GGG 0.348256 4_3:+11509979 None:intergenic
CCAAAGGGATCAAACCTAAA+AGG 0.349687 4_3:+11505725 None:intergenic
CAAAAGTTAACTGCAATATA+TGG 0.353568 4_3:+11507009 None:intergenic
TAAGAAGCTGAGCCGGCGTC+GGG 0.359061 4_3:+11509830 None:intergenic
GCTTCTTTCTACTACGGCCT+TGG 0.361517 4_3:-11507054 Msa0629980:CDS
AAGAAGGCATTATAGGTTAC+TGG 0.366199 4_3:-11507770 Msa0629980:CDS
TTTCTCGCTGGTGCTATTGC+CGG 0.374241 4_3:-11509760 Msa0629980:CDS
AAAGCAATTCCCACAACTAA+TGG 0.376764 4_3:+11505939 None:intergenic
GGCGAATTCGTTGTTCGGTT+TGG 0.378119 4_3:+11509852 None:intergenic
TTTGGTTTGGGAGGTGGAGC+GGG 0.381476 4_3:+11509870 None:intergenic
TTGCAGGCCATATCAATGAT+AGG 0.383329 4_3:-11507798 Msa0629980:intron
AAGAGCTGAACAGCACTATA+AGG 0.384778 4_3:+11507630 None:intergenic
GTCGGGGCGAATTCGTTGTT+CGG 0.386237 4_3:+11509847 None:intergenic
TGTCATAAGGATAAGTTTGA+TGG 0.391419 4_3:+11510041 None:intergenic
ATATCTCACTGCTAGCAAAT+TGG 0.395642 4_3:+11505914 None:intergenic
AGAAACAATGCAGCATCTTT+GGG 0.402197 4_3:+11509778 None:intergenic
GTTCGGTTTGGTTTGGGAGG+TGG 0.402695 4_3:+11509864 None:intergenic
GAAAGTGCTAAGAAGACAAT+TGG 0.415198 4_3:-11509573 Msa0629980:CDS
AACGATGAGCTCTATGTTGT+CGG 0.415561 4_3:-11507490 Msa0629980:CDS
GAGTTGTTGAAGAGGTGGTT+GGG 0.416337 4_3:+11509943 None:intergenic
CAATGCCAACTAACCTGAAA+TGG 0.419802 4_3:+11506716 None:intergenic
GGAGTTGTTGAAGAGGTGGT+TGG 0.421605 4_3:+11509942 None:intergenic
TTCGTTCTACTGCGTGTGTT+TGG 0.426091 4_3:+11510077 None:intergenic
CGTAATCTCAGGACATCTAA+AGG 0.428560 4_3:+11507221 None:intergenic
AGTTCACCATCATTGATTAT+GGG 0.439080 4_3:+11505998 None:intergenic
TAATGCTCTATTCTTTATCC+TGG 0.441158 4_3:-11505838 Msa0629980:three_prime_UTR
AATGATTTGTGTCAACTTGT+TGG 0.444547 4_3:-11505763 Msa0629980:three_prime_UTR
CCTTCTCACTAGCAGCAATC+AGG 0.448175 4_3:+11506067 None:intergenic
TAAAATTATCCATTAGTTGT+GGG 0.456350 4_3:-11505948 Msa0629980:three_prime_UTR
GATCACAAGTACCTGCTGTT+TGG 0.457445 4_3:+11506393 None:intergenic
AAATTTACAGAAAATATTCA+AGG 0.460729 4_3:-11507517 Msa0629980:intron
GGGTGAAACGACGTCGTTAG+AGG 0.465059 4_3:+11509963 None:intergenic
CAAGTGCGACGACGGCGATC+GGG 0.465236 4_3:+11509803 None:intergenic
CAGACTCATGGAGTGCGGAT+TGG 0.468553 4_3:-11509600 Msa0629980:CDS
TTACGATTAGCTGTTGAACC+TGG 0.470496 4_3:-11507203 Msa0629980:CDS
ACAAGTGCGACGACGGCGAT+CGG 0.484450 4_3:+11509802 None:intergenic
TGTTCGTTGAGTCTGTCATA+AGG 0.490789 4_3:+11510028 None:intergenic
GGCATTTCTTTAGTTTGTTG+CGG 0.498494 4_3:+11506019 None:intergenic
GTTTGGTTTGGGAGGTGGAG+CGG 0.499485 4_3:+11509869 None:intergenic
GTAATCTCAGGACATCTAAA+GGG 0.501170 4_3:+11507222 None:intergenic
TTAAGAAGCTGAGCCGGCGT+CGG 0.508929 4_3:+11509829 None:intergenic
ATAAAATTATCCATTAGTTG+TGG 0.515167 4_3:-11505949 Msa0629980:three_prime_UTR
GGTTTGGGAGGTGGAGCGGG+TGG 0.522556 4_3:+11509873 None:intergenic
CGCCTTGAGCATGGTAAGAG+AGG 0.526243 4_3:-11507085 Msa0629980:CDS
GAAAATTGCTGTTTACACAT+TGG 0.526375 4_3:+11510116 None:intergenic
TAATCAATGATGGTGAACTT+AGG 0.527251 4_3:-11505994 Msa0629980:three_prime_UTR
AACGACGTCGTTAGAGGTGG+TGG 0.529351 4_3:+11509969 None:intergenic
GGCGAATTTGGAAGGAATGG+TGG 0.531529 4_3:+11509894 None:intergenic
TAGAGGTGGTGGTTAAATTG+GGG 0.531755 4_3:+11509980 None:intergenic
TGCTGTTTACACATTGGAGA+AGG 0.533208 4_3:+11510122 None:intergenic
GAAGACAATTGGTTTCATTG+AGG 0.535119 4_3:-11509562 Msa0629980:intron
TCGAATCAAACTTCTCATGC+AGG 0.539543 4_3:-11509704 Msa0629980:intron
GAGCGGGTGGCGAATTTGGA+AGG 0.540309 4_3:+11509886 None:intergenic
GAAATGCCCATAATCAATGA+TGG 0.541338 4_3:-11506004 Msa0629980:exon
AGAAGTTTGATTCGATCAAG+TGG 0.545093 4_3:+11509712 None:intergenic
AAGCATTGGGCACAAATCCT+CGG 0.546969 4_3:+11506427 None:intergenic
ACAAGTACCTGCTGTTTGGT+AGG 0.550522 4_3:+11506397 None:intergenic
TCGATCAAGTGGAGCAGTGA+CGG 0.556672 4_3:+11509723 None:intergenic
CACACTTACATGCTATCCTC+TGG 0.561081 4_3:-11506796 Msa0629980:CDS
CAACAGCTAATCGTAATCTC+AGG 0.561207 4_3:+11507210 None:intergenic
ATTACAGCTAAAATACATCC+AGG 0.562073 4_3:+11505820 None:intergenic
GATGCTGCATTGTTTCTCGC+TGG 0.563132 4_3:-11509772 Msa0629980:CDS
TTTATAGGTCGCCTTGAGCA+TGG 0.566530 4_3:-11507094 Msa0629980:intron
CAACGAATTCGCCCCGACGC+CGG 0.566929 4_3:-11509842 Msa0629980:CDS
GATGTTACGCCACGTGGCGA+CGG 0.567513 4_3:+11510002 None:intergenic
TTGAGCATGGTAAGAGAGGA+AGG 0.567910 4_3:-11507081 Msa0629980:CDS
AGGAATGGTGGTGGTTGCGT+CGG 0.575629 4_3:+11509906 None:intergenic
GGCAAGAGATGCTGAAAGCA+CGG 0.575833 4_3:+11506818 None:intergenic
TGAAGGTGGAGTTGTTGAAG+AGG 0.577683 4_3:+11509935 None:intergenic
TACGATTAGCTGTTGAACCT+GGG 0.579092 4_3:-11507202 Msa0629980:CDS
TGCAGGCCATATCAATGATA+GGG 0.580409 4_3:-11507797 Msa0629980:intron
GGAGTTATTGGCTTGTACCG+AGG 0.582134 4_3:-11506444 Msa0629980:CDS
ATTGGGGATGTTACGCCACG+TGG 0.585033 4_3:+11509996 None:intergenic
TTTGATTGATGCAGGTATTG+TGG 0.586365 4_3:-11506475 Msa0629980:intron
GCAGGTATTGTGGCACAAGA+TGG 0.586976 4_3:-11506465 Msa0629980:intron
GGGTGGTTAAGAAGCTGAGC+CGG 0.587213 4_3:+11509823 None:intergenic
TCAATGATAGGGAAGGAAGA+AGG 0.587858 4_3:-11507786 Msa0629980:CDS
AGGTGGAGTTGTTGAAGAGG+TGG 0.589863 4_3:+11509938 None:intergenic
GGCCATATCAATGATAGGGA+AGG 0.590764 4_3:-11507793 Msa0629980:CDS
GTGCGACGACGGCGATCGGG+TGG 0.593456 4_3:+11509806 None:intergenic
GAATTTGGAAGGAATGGTGG+TGG 0.593957 4_3:+11509897 None:intergenic
CCTGATTGCTGCTAGTGAGA+AGG 0.594558 4_3:-11506067 Msa0629980:CDS
GGTGGCGAATTTGGAAGGAA+TGG 0.595509 4_3:+11509891 None:intergenic
TAGCAGTGAGATATCTCAGA+AGG 0.596118 4_3:-11505905 Msa0629980:three_prime_UTR
GGAGTTTCAAACAATTGCAG+AGG 0.597624 4_3:-11506046 Msa0629980:CDS
TCTGTCATTGTTCGACACCC+AGG 0.599777 4_3:+11507185 None:intergenic
TCGAAGACAGATGCAACTGA+AGG 0.601278 4_3:-11506766 Msa0629980:CDS
TTCCTCTCTTACCATGCTCA+AGG 0.602242 4_3:+11507083 None:intergenic
GTTGTTCGGTTTGGTTTGGG+AGG 0.603199 4_3:+11509861 None:intergenic
GTTTGGTTATGCTTACATGA+AGG 0.605417 4_3:+11510094 None:intergenic
AGGCATTATAGGTTACTGGA+AGG 0.606748 4_3:-11507766 Msa0629980:CDS
TAGTGATGCTCACCTGTGGT+AGG 0.606895 4_3:+11507739 None:intergenic
GGAGCTATTCCGATAAGAGA+AGG 0.610783 4_3:+11507030 None:intergenic
GTTGTCGGAAGACTTGCAGC+AGG 0.611360 4_3:-11507475 Msa0629980:intron
AGCAGTGAGATATCTCAGAA+GGG 0.619251 4_3:-11505904 Msa0629980:three_prime_UTR
GGCATTATAGGTTACTGGAA+GGG 0.621790 4_3:-11507765 Msa0629980:CDS
TTTGGGAACAAGTGCGACGA+CGG 0.629042 4_3:+11509795 None:intergenic
CGAAGACAGATGCAACTGAA+GGG 0.629981 4_3:-11506765 Msa0629980:CDS
CTGGAAGGGTAACCTACCAC+AGG 0.641606 4_3:-11507751 Msa0629980:intron
CAGAGGATAGCATGTAAGTG+TGG 0.643661 4_3:+11506797 None:intergenic
GCAGTGAGATATCTCAGAAG+GGG 0.651708 4_3:-11505903 Msa0629980:three_prime_UTR
TGAAACGACGTCGTTAGAGG+TGG 0.660799 4_3:+11509966 None:intergenic
GGTTGCGTCGGTGAAAGTGA+AGG 0.665657 4_3:+11509918 None:intergenic
TGCGTCGGTGAAAGTGAAGG+TGG 0.665833 4_3:+11509921 None:intergenic
TTCCGATAAGAGAAGGACCA+AGG 0.667681 4_3:+11507037 None:intergenic
AAGAAGCTGAGCCGGCGTCG+GGG 0.667870 4_3:+11509831 None:intergenic
CGAACAAAACCGTCGCCACG+TGG 0.668933 4_3:-11510011 Msa0629980:CDS
TGTCTTCGAACTGTGTCCAG+AGG 0.670978 4_3:+11506780 None:intergenic
TGGGTGTCGAACAATGACAG+AGG 0.760125 4_3:-11507183 Msa0629980:intron
AAGAGATGCTGAAAGCACGG+CGG 0.775581 4_3:+11506821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAATATTATGAGTTTAA+TGG - chr4_3:11506610-11506629 Msa0629980:intron 15.0%
!!! GGATTTTATATTTTTTTTGT+TGG - chr4_3:11507890-11507909 Msa0629980:intron 15.0%
!! AACATTACCTATATATTTAT+TGG - chr4_3:11508005-11508024 Msa0629980:intron 15.0%
!! AAATTTACAGAAAATATTCA+AGG - chr4_3:11508327-11508346 Msa0629980:intron 15.0%
!!! ATTTTTTTTTGCAAATTTAC+TGG + chr4_3:11509569-11509588 None:intergenic 15.0%
!! AATTTGCAAAAAAAAATAAG+TGG - chr4_3:11509572-11509591 Msa0629980:CDS 15.0%
!!! ATGATATATTTAGTTGATAA+CGG - chr4_3:11509668-11509687 Msa0629980:intron 15.0%
!! ATATGATATCATGTCAATTA+AGG + chr4_3:11506539-11506558 None:intergenic 20.0%
!! AAATGAATATGTCAACTTAT+CGG + chr4_3:11506679-11506698 None:intergenic 20.0%
!! AAGTTGACATATTCATTTAA+TGG - chr4_3:11506681-11506700 Msa0629980:intron 20.0%
!!! TAATGATTATTTTACACTGT+CGG - chr4_3:11506711-11506730 Msa0629980:intron 20.0%
!!! TAAAAAGAACATTTTCATCA+TGG - chr4_3:11507002-11507021 Msa0629980:CDS 20.0%
!!! AAAAAGAACATTTTCATCAT+GGG - chr4_3:11507003-11507022 Msa0629980:CDS 20.0%
!!! ACAATAAATTGATTTTTGAG+CGG + chr4_3:11507253-11507272 None:intergenic 20.0%
!!! AATTGTTTTAGTTCTGTAAT+TGG - chr4_3:11507782-11507801 Msa0629980:CDS 20.0%
!! AAATATAAAATCCTTGATCA+GGG + chr4_3:11507883-11507902 None:intergenic 20.0%
!! AAAATATAAAATCCTTGATC+AGG + chr4_3:11507884-11507903 None:intergenic 20.0%
!! TTAAGCTCCAATAAATATAT+AGG + chr4_3:11508015-11508034 None:intergenic 20.0%
!! CTTTGCTTATGAAATTTATA+AGG - chr4_3:11508234-11508253 Msa0629980:intron 20.0%
!! AAATATTTGTAAACCATACA+AGG + chr4_3:11508451-11508470 None:intergenic 20.0%
!! CACTTTACAAAAAAAATTAC+TGG + chr4_3:11508532-11508551 None:intergenic 20.0%
!!! TTATCTTTTTAAGTGCATAT+TGG - chr4_3:11508891-11508910 Msa0629980:intron 20.0%
!!! ATTAATATTTTGATTGATGC+AGG - chr4_3:11509361-11509380 Msa0629980:intron 20.0%
!! ATCAGCAAAATTAGAAATTA+AGG + chr4_3:11509521-11509540 None:intergenic 20.0%
!! ATAAAATTATCCATTAGTTG+TGG - chr4_3:11509895-11509914 Msa0629980:CDS 20.0%
!! TAAAATTATCCATTAGTTGT+GGG - chr4_3:11509896-11509915 Msa0629980:CDS 20.0%
! ATGTTTATGAAATGACATTG+TGG - chr4_3:11506214-11506233 Msa0629980:intron 25.0%
! TTGTGTAAAAGTTACACATT+AGG - chr4_3:11506465-11506484 Msa0629980:intron 25.0%
! TTGACATGATATCATATCAT+TGG - chr4_3:11506542-11506561 Msa0629980:intron 25.0%
!! GGAATTTGTTTATACCATTT+CGG - chr4_3:11506835-11506854 Msa0629980:CDS 25.0%
! GTGTACTAAAATGAATGTAA+TGG + chr4_3:11506913-11506932 None:intergenic 25.0%
!! CTCTTTCTTTTCTATTAATC+AGG + chr4_3:11507174-11507193 None:intergenic 25.0%
!!! AATAAATTGATTTTTGAGCG+GGG + chr4_3:11507251-11507270 None:intergenic 25.0%
!!! CAATAAATTGATTTTTGAGC+GGG + chr4_3:11507252-11507271 None:intergenic 25.0%
!! ATTCTAAAAGACACAATCAT+TGG + chr4_3:11507410-11507429 None:intergenic 25.0%
! ACTAAAACAATTACTAACCA+GGG + chr4_3:11507774-11507793 None:intergenic 25.0%
! AACTAAAACAATTACTAACC+AGG + chr4_3:11507775-11507794 None:intergenic 25.0%
! GAAAACTACATGAAAATTGA+TGG + chr4_3:11507840-11507859 None:intergenic 25.0%
! AATATAAAATCCTTGATCAG+GGG + chr4_3:11507882-11507901 None:intergenic 25.0%
! GTACTAAATGTGTAAGTTAA+TGG - chr4_3:11507912-11507931 Msa0629980:intron 25.0%
! AAATTATTGTCAAGGAGTTT+GGG + chr4_3:11507942-11507961 None:intergenic 25.0%
! AAAATTATTGTCAAGGAGTT+TGG + chr4_3:11507943-11507962 None:intergenic 25.0%
!!! TAATTTTTAGCGACATTAGA+TGG - chr4_3:11507956-11507975 Msa0629980:intron 25.0%
! AAAGACTACTCAACATTATA+AGG + chr4_3:11508152-11508171 None:intergenic 25.0%
!!! TTGTTTTAGTGTTTCTTTTC+AGG - chr4_3:11508177-11508196 Msa0629980:intron 25.0%
! AATTCTTGAAAGATAGTTAG+CGG + chr4_3:11508264-11508283 None:intergenic 25.0%
! ATTAAAACGGGAAAGATATA+AGG + chr4_3:11508714-11508733 None:intergenic 25.0%
! ACAATTCTGTTCATTAAAAC+GGG + chr4_3:11508726-11508745 None:intergenic 25.0%
! CACAATTCTGTTCATTAAAA+CGG + chr4_3:11508727-11508746 None:intergenic 25.0%
! CAAAAGTTAACTGCAATATA+TGG + chr4_3:11508838-11508857 None:intergenic 25.0%
! TTATTGCTATAACAGCTAAA+AGG + chr4_3:11509258-11509277 None:intergenic 25.0%
! AGCAAAATTAGAAATTAAGG+AGG + chr4_3:11509518-11509537 None:intergenic 25.0%
!! GAAAATTGCTGTTTACACAT+TGG + chr4_3:11505731-11505750 None:intergenic 30.0%
!! AAGGATAAGTTTGATGGTTT+TGG + chr4_3:11505800-11505819 None:intergenic 30.0%
TGTCATAAGGATAAGTTTGA+TGG + chr4_3:11505806-11505825 None:intergenic 30.0%
AGTTTATTGATATACACCGT+CGG - chr4_3:11506319-11506338 Msa0629980:intron 30.0%
TTCAACCACATTAAATGATG+TGG + chr4_3:11506496-11506515 None:intergenic 30.0%
GTTTAATGGAAGTAAACTGA+CGG - chr4_3:11506624-11506643 Msa0629980:intron 30.0%
!! TATCGGTTTACTTCAATATG+TGG + chr4_3:11506662-11506681 None:intergenic 30.0%
! TCAAGTAACGCATTTTGAAT+AGG + chr4_3:11506866-11506885 None:intergenic 30.0%
AATTGAAGACTTCATTTGGT+CGG + chr4_3:11507105-11507124 None:intergenic 30.0%
AAGGAATTGAAGACTTCATT+TGG + chr4_3:11507109-11507128 None:intergenic 30.0%
GGTTGAGATAAAAATAGATG+TGG + chr4_3:11507309-11507328 None:intergenic 30.0%
GGAGTTACAATAATACACAA+GGG + chr4_3:11507335-11507354 None:intergenic 30.0%
TGGAGTTACAATAATACACA+AGG + chr4_3:11507336-11507355 None:intergenic 30.0%
GAAATCATGAAATGCAAGTT+GGG + chr4_3:11507731-11507750 None:intergenic 30.0%
AATTATTGTCAAGGAGTTTG+GGG + chr4_3:11507941-11507960 None:intergenic 30.0%
GTCGCTAAAAATTATTGTCA+AGG + chr4_3:11507950-11507969 None:intergenic 30.0%
!!! TGTTTCTTTTCAGGTGATTA+GGG - chr4_3:11508186-11508205 Msa0629980:intron 30.0%
TTTGTAAACCATACAAGGAT+AGG + chr4_3:11508446-11508465 None:intergenic 30.0%
AGTAAGATACATTGACATCA+AGG + chr4_3:11508576-11508595 None:intergenic 30.0%
!! CGTTTTAATGAACAGAATTG+TGG - chr4_3:11508725-11508744 Msa0629980:intron 30.0%
! AACAGAATTGTGGCTTTTAT+AGG - chr4_3:11508735-11508754 Msa0629980:intron 30.0%
! TTTAAGTGCATATTGGTGTT+TGG - chr4_3:11508898-11508917 Msa0629980:intron 30.0%
TTTAGTCTATTACCCATACA+AGG + chr4_3:11508953-11508972 None:intergenic 30.0%
! GTTCTCTTTTGATATTTCTC+TGG + chr4_3:11508986-11509005 None:intergenic 30.0%
GCATCTAATACTGTCTTATA+AGG + chr4_3:11509109-11509128 None:intergenic 30.0%
GCACAGAAAATGATTCTAAA+AGG + chr4_3:11509164-11509183 None:intergenic 30.0%
TATATGTAAGCACACATTGA+TGG - chr4_3:11509292-11509311 Msa0629980:intron 30.0%
!!! GGTAGGTTTTTTAAAGCATT+GGG + chr4_3:11509433-11509452 None:intergenic 30.0%
!!! TGGTAGGTTTTTTAAAGCAT+TGG + chr4_3:11509434-11509453 None:intergenic 30.0%
AATTAGAAATTAAGGAGGCA+TGG + chr4_3:11509513-11509532 None:intergenic 30.0%
GGATAAAATCCTGTTGAAAT+CGG - chr4_3:11509593-11509612 Msa0629980:CDS 30.0%
! AACAAAAAACCGATTTCAAC+AGG + chr4_3:11509605-11509624 None:intergenic 30.0%
TTGTGTGTTCTTAGTAAGAT+GGG + chr4_3:11509641-11509660 None:intergenic 30.0%
! AGTTCACCATCATTGATTAT+GGG + chr4_3:11509849-11509868 None:intergenic 30.0%
! AAGTTCACCATCATTGATTA+TGG + chr4_3:11509850-11509869 None:intergenic 30.0%
! TAATCAATGATGGTGAACTT+AGG - chr4_3:11509850-11509869 Msa0629980:CDS 30.0%
TAATGCTCTATTCTTTATCC+TGG - chr4_3:11510006-11510025 Msa0629980:CDS 30.0%
ATTACAGCTAAAATACATCC+AGG + chr4_3:11510027-11510046 None:intergenic 30.0%
! AATGATTTGTGTCAACTTGT+TGG - chr4_3:11510081-11510100 Msa0629980:five_prime_UTR 30.0%
GTTTGGTTATGCTTACATGA+AGG + chr4_3:11505753-11505772 None:intergenic 35.0%
! TTAGAGGTGGTGGTTAAATT+GGG + chr4_3:11505868-11505887 None:intergenic 35.0%
AGAAACAATGCAGCATCTTT+GGG + chr4_3:11506069-11506088 None:intergenic 35.0%
! AGAAGTTTGATTCGATCAAG+TGG + chr4_3:11506135-11506154 None:intergenic 35.0%
!! GAAAGTGCTAAGAAGACAAT+TGG - chr4_3:11506271-11506290 Msa0629980:intron 35.0%
! GAAGACAATTGGTTTCATTG+AGG - chr4_3:11506282-11506301 Msa0629980:intron 35.0%
TGATGCCACATCATTTAATG+TGG - chr4_3:11506488-11506507 Msa0629980:intron 35.0%
!! GTTTCTCGTTGGTAGTTAAT+TGG - chr4_3:11506808-11506827 Msa0629980:CDS 35.0%
TTGAATAGGAAACACCGAAA+TGG + chr4_3:11506852-11506871 None:intergenic 35.0%
TGGTTACATGATGTCAAAGA+TGG + chr4_3:11507046-11507065 None:intergenic 35.0%
!! AAAATAGATGTGGCTCTAGA+AGG + chr4_3:11507299-11507318 None:intergenic 35.0%
TACAATAATACACAAGGGTC+TGG + chr4_3:11507330-11507349 None:intergenic 35.0%
CGTACACTAGACAGTTAAAT+TGG + chr4_3:11507356-11507375 None:intergenic 35.0%
AGACACAATCATTGGATGTT+AGG + chr4_3:11507402-11507421 None:intergenic 35.0%
TTGAGTCAGCTATTATCTGA+CGG - chr4_3:11507459-11507478 Msa0629980:intron 35.0%
! GCAAGTTGAAGAGATCAAAA+TGG + chr4_3:11507501-11507520 None:intergenic 35.0%
GGAAATCATGAAATGCAAGT+TGG + chr4_3:11507732-11507751 None:intergenic 35.0%
TAATCCAGTTTGCAGTCTAA+AGG - chr4_3:11507805-11507824 Msa0629980:intron 35.0%
AATCCAGTTTGCAGTCTAAA+GGG - chr4_3:11507806-11507825 Msa0629980:intron 35.0%
! TAGCGACATTAGATGGTTTT+TGG - chr4_3:11507963-11507982 Msa0629980:intron 35.0%
!! CTTAAGTTGACAAGATTTGC+AGG - chr4_3:11508030-11508049 Msa0629980:intron 35.0%
TTCCTTCCCTATCATTGATA+TGG + chr4_3:11508056-11508075 None:intergenic 35.0%
!! AAGAAGGCATTATAGGTTAC+TGG - chr4_3:11508074-11508093 Msa0629980:intron 35.0%
!!! GTGTTTCTTTTCAGGTGATT+AGG - chr4_3:11508185-11508204 Msa0629980:intron 35.0%
GTAATCTCAGGACATCTAAA+GGG + chr4_3:11508625-11508644 None:intergenic 35.0%
! AACAATGACAGAGGTATATG+TGG - chr4_3:11508670-11508689 Msa0629980:intron 35.0%
! ACAATGACAGAGGTATATGT+GGG - chr4_3:11508671-11508690 Msa0629980:intron 35.0%
! GGTTTTGCTTCTTTCTACTA+CGG - chr4_3:11508784-11508803 Msa0629980:intron 35.0%
TAAGACATCCTAACCTTGTA+TGG - chr4_3:11508937-11508956 Msa0629980:intron 35.0%
AAGACATCCTAACCTTGTAT+GGG - chr4_3:11508938-11508957 Msa0629980:intron 35.0%
TCTATTACCCATACAAGGTT+AGG + chr4_3:11508948-11508967 None:intergenic 35.0%
! ACAGTATTAGATGCCATTTC+AGG - chr4_3:11509115-11509134 Msa0629980:intron 35.0%
! GCAAGTTTTGCACAGATAAA+GGG + chr4_3:11509229-11509248 None:intergenic 35.0%
! TTTGATTGATGCAGGTATTG+TGG - chr4_3:11509369-11509388 Msa0629980:intron 35.0%
TAAAAAACCTACCAAACAGC+AGG - chr4_3:11509440-11509459 Msa0629980:intron 35.0%
GTTGTGTGTTCTTAGTAAGA+TGG + chr4_3:11509642-11509661 None:intergenic 35.0%
!! ACTTTGAAGCAGATTGTGAT+TGG - chr4_3:11509702-11509721 Msa0629980:intron 35.0%
!! GGCATTTCTTTAGTTTGTTG+CGG + chr4_3:11509828-11509847 None:intergenic 35.0%
GAAATGCCCATAATCAATGA+TGG - chr4_3:11509840-11509859 Msa0629980:CDS 35.0%
AAAGCAATTCCCACAACTAA+TGG + chr4_3:11509908-11509927 None:intergenic 35.0%
ATATCTCACTGCTAGCAAAT+TGG + chr4_3:11509933-11509952 None:intergenic 35.0%
! AAGGGGACTGTAAATTTTGT+AGG - chr4_3:11509958-11509977 Msa0629980:CDS 35.0%
! ATGAACAGACATCTCCTTTT+AGG - chr4_3:11510105-11510124 Msa0629980:five_prime_UTR 35.0%
!!! CTTTTAGGTTTGATCCCTTT+GGG - chr4_3:11510120-11510139 Msa0629980:five_prime_UTR 35.0%
! TGCTGTTTACACATTGGAGA+AGG + chr4_3:11505725-11505744 None:intergenic 40.0%
TGTTCGTTGAGTCTGTCATA+AGG + chr4_3:11505819-11505838 None:intergenic 40.0%
! TAGAGGTGGTGGTTAAATTG+GGG + chr4_3:11505867-11505886 None:intergenic 40.0%
! GTTAGAGGTGGTGGTTAAAT+TGG + chr4_3:11505869-11505888 None:intergenic 40.0%
!! TTCGTTGTTCGGTTTGGTTT+GGG + chr4_3:11505989-11506008 None:intergenic 40.0%
!! ATTCGTTGTTCGGTTTGGTT+TGG + chr4_3:11505990-11506009 None:intergenic 40.0%
GAGAAACAATGCAGCATCTT+TGG + chr4_3:11506070-11506089 None:intergenic 40.0%
TCGAATCAAACTTCTCATGC+AGG - chr4_3:11506140-11506159 Msa0629980:intron 40.0%
!!! TGTGGTTTTTTGCAGACTCA+TGG - chr4_3:11506232-11506251 Msa0629980:intron 40.0%
! GTGTAACTCTTTTACACCGA+CGG + chr4_3:11506338-11506357 None:intergenic 40.0%
CTTCACATATAACCCAAGCA+CGG + chr4_3:11506742-11506761 None:intergenic 40.0%
! GCTTAACAACTGTTTCTCGT+TGG - chr4_3:11506797-11506816 Msa0629980:CDS 40.0%
!! CGTTGGTAGTTAATTGGTTG+TGG - chr4_3:11506814-11506833 Msa0629980:CDS 40.0%
AGAGCTATTTGAGGAACTCT+TGG + chr4_3:11507066-11507085 None:intergenic 40.0%
AAGAGTTCCTCAAATAGCTC+TGG - chr4_3:11507065-11507084 Msa0629980:CDS 40.0%
ACAAGTTCCAGAGCTATTTG+AGG + chr4_3:11507075-11507094 None:intergenic 40.0%
AATCAGGAATGCTCTAGCAT+AGG + chr4_3:11507158-11507177 None:intergenic 40.0%
GGCAAGTCGTACATATAGAA+CGG + chr4_3:11507753-11507772 None:intergenic 40.0%
ATACCCTTTAGACTGCAAAC+TGG + chr4_3:11507812-11507831 None:intergenic 40.0%
GTAATTAACTCCCCTGATCA+AGG - chr4_3:11507869-11507888 Msa0629980:intron 40.0%
TTGCAGGCCATATCAATGAT+AGG - chr4_3:11508046-11508065 Msa0629980:intron 40.0%
TGCAGGCCATATCAATGATA+GGG - chr4_3:11508047-11508066 Msa0629980:intron 40.0%
TCAATGATAGGGAAGGAAGA+AGG - chr4_3:11508058-11508077 Msa0629980:intron 40.0%
AGGCATTATAGGTTACTGGA+AGG - chr4_3:11508078-11508097 Msa0629980:intron 40.0%
GGCATTATAGGTTACTGGAA+GGG - chr4_3:11508079-11508098 Msa0629980:intron 40.0%
AAGAGCTGAACAGCACTATA+AGG + chr4_3:11508217-11508236 None:intergenic 40.0%
GTACCAAACATTGCATGTTC+AGG - chr4_3:11508288-11508307 Msa0629980:intron 40.0%
ACACCTGAACATGCAATGTT+TGG + chr4_3:11508294-11508313 None:intergenic 40.0%
AACGATGAGCTCTATGTTGT+CGG - chr4_3:11508354-11508373 Msa0629980:intron 40.0%
TTACGAGACCTATCCTTGTA+TGG - chr4_3:11508435-11508454 Msa0629980:intron 40.0%
CGTAATCTCAGGACATCTAA+AGG + chr4_3:11508626-11508645 None:intergenic 40.0%
CAACAGCTAATCGTAATCTC+AGG + chr4_3:11508637-11508656 None:intergenic 40.0%
! TTACGATTAGCTGTTGAACC+TGG - chr4_3:11508641-11508660 Msa0629980:intron 40.0%
! TACGATTAGCTGTTGAACCT+GGG - chr4_3:11508642-11508661 Msa0629980:intron 40.0%
!! AGATGCCATTTCAGGTTAGT+TGG - chr4_3:11509123-11509142 Msa0629980:intron 40.0%
CAATGCCAACTAACCTGAAA+TGG + chr4_3:11509131-11509150 None:intergenic 40.0%
! CGCAAGTTTTGCACAGATAA+AGG + chr4_3:11509230-11509249 None:intergenic 40.0%
GGAGTTTCAAACAATTGCAG+AGG - chr4_3:11509798-11509817 Msa0629980:CDS 40.0%
TAGCAGTGAGATATCTCAGA+AGG - chr4_3:11509939-11509958 Msa0629980:CDS 40.0%
AGCAGTGAGATATCTCAGAA+GGG - chr4_3:11509940-11509959 Msa0629980:CDS 40.0%
! GTAGGACTCAAGTTTGTTCT+AGG - chr4_3:11509976-11509995 Msa0629980:CDS 40.0%
CCAAAGGGATCAAACCTAAA+AGG + chr4_3:11510122-11510141 None:intergenic 40.0%
!!! CCTTTTAGGTTTGATCCCTT+TGG - chr4_3:11510119-11510138 Msa0629980:five_prime_UTR 40.0%
TTCGTTCTACTGCGTGTGTT+TGG + chr4_3:11505770-11505789 None:intergenic 45.0%
GAGTTGTTGAAGAGGTGGTT+GGG + chr4_3:11505904-11505923 None:intergenic 45.0%
TGAAGGTGGAGTTGTTGAAG+AGG + chr4_3:11505912-11505931 None:intergenic 45.0%
GAATTTGGAAGGAATGGTGG+TGG + chr4_3:11505950-11505969 None:intergenic 45.0%
! TTTTGCAGACTCATGGAGTG+CGG - chr4_3:11506239-11506258 Msa0629980:intron 45.0%
CTGCCGATGGAATTGTGAAT+AGG - chr4_3:11507225-11507244 Msa0629980:CDS 45.0%
GGGCCTATTCACAATTCCAT+CGG + chr4_3:11507231-11507250 None:intergenic 45.0%
TCTAGAAGGAGGGGAACATT+TGG + chr4_3:11507285-11507304 None:intergenic 45.0%
!! TAGATGTGGCTCTAGAAGGA+GGG + chr4_3:11507295-11507314 None:intergenic 45.0%
!! ATAGATGTGGCTCTAGAAGG+AGG + chr4_3:11507296-11507315 None:intergenic 45.0%
! AATGCAAGTTGGGCATGAGA+TGG + chr4_3:11507721-11507740 None:intergenic 45.0%
TCTATATGTACGACTTGCCC+TGG - chr4_3:11507754-11507773 Msa0629980:CDS 45.0%
TATTGTCAAGGAGTTTGGGG+AGG + chr4_3:11507938-11507957 None:intergenic 45.0%
GGCCATATCAATGATAGGGA+AGG - chr4_3:11508051-11508070 Msa0629980:intron 45.0%
!! GGGAAGGAAGAAGGCATTAT+AGG - chr4_3:11508067-11508086 Msa0629980:intron 45.0%
TATCTAGTGATGCTCACCTG+TGG + chr4_3:11508112-11508131 None:intergenic 45.0%
TTTATAGGTCGCCTTGAGCA+TGG - chr4_3:11508750-11508769 Msa0629980:intron 45.0%
TTCCTCTCTTACCATGCTCA+AGG + chr4_3:11508764-11508783 None:intergenic 45.0%
TTGAGCATGGTAAGAGAGGA+AGG - chr4_3:11508763-11508782 Msa0629980:intron 45.0%
TTCCGATAAGAGAAGGACCA+AGG + chr4_3:11508810-11508829 None:intergenic 45.0%
GGAGCTATTCCGATAAGAGA+AGG + chr4_3:11508817-11508836 None:intergenic 45.0%
CAGAGGATAGCATGTAAGTG+TGG + chr4_3:11509050-11509069 None:intergenic 45.0%
CACACTTACATGCTATCCTC+TGG - chr4_3:11509048-11509067 Msa0629980:intron 45.0%
TCGAAGACAGATGCAACTGA+AGG - chr4_3:11509078-11509097 Msa0629980:intron 45.0%
CGAAGACAGATGCAACTGAA+GGG - chr4_3:11509079-11509098 Msa0629980:intron 45.0%
GTGGCACAAGATGGAGTTAT+TGG - chr4_3:11509388-11509407 Msa0629980:intron 45.0%
!! AAGCATTGGGCACAAATCCT+CGG + chr4_3:11509420-11509439 None:intergenic 45.0%
! ACAAGTACCTGCTGTTTGGT+AGG + chr4_3:11509450-11509469 None:intergenic 45.0%
GATCACAAGTACCTGCTGTT+TGG + chr4_3:11509454-11509473 None:intergenic 45.0%
CCTGATGCTGCAAAAACACA+AGG + chr4_3:11509731-11509750 None:intergenic 45.0%
!! CCTTGTGTTTTTGCAGCATC+AGG - chr4_3:11509728-11509747 Msa0629980:CDS 45.0%
GCAGTGAGATATCTCAGAAG+GGG - chr4_3:11509941-11509960 Msa0629980:CDS 45.0%
!! ATCTTATATAAAAAAATATA+AGG - chr4_3:11507613-11507632 Msa0629980:CDS 5.0%
TGAAACGACGTCGTTAGAGG+TGG + chr4_3:11505881-11505900 None:intergenic 50.0%
GGAGTTGTTGAAGAGGTGGT+TGG + chr4_3:11505905-11505924 None:intergenic 50.0%
AGGTGGAGTTGTTGAAGAGG+TGG + chr4_3:11505909-11505928 None:intergenic 50.0%
GGCGAATTTGGAAGGAATGG+TGG + chr4_3:11505953-11505972 None:intergenic 50.0%
GGTGGCGAATTTGGAAGGAA+TGG + chr4_3:11505956-11505975 None:intergenic 50.0%
!! GTTGTTCGGTTTGGTTTGGG+AGG + chr4_3:11505986-11506005 None:intergenic 50.0%
GGCGAATTCGTTGTTCGGTT+TGG + chr4_3:11505995-11506014 None:intergenic 50.0%
TTTGGGAACAAGTGCGACGA+CGG + chr4_3:11506052-11506071 None:intergenic 50.0%
! GATGCTGCATTGTTTCTCGC+TGG - chr4_3:11506072-11506091 Msa0629980:CDS 50.0%
!! TTTCTCGCTGGTGCTATTGC+CGG - chr4_3:11506084-11506103 Msa0629980:CDS 50.0%
TCGATCAAGTGGAGCAGTGA+CGG + chr4_3:11506124-11506143 None:intergenic 50.0%
AGTAGCTGCAGAGCTTGCAA+AGG + chr4_3:11507128-11507147 None:intergenic 50.0%
CAAGCTCTGCAGCTACTGAT+AGG - chr4_3:11507131-11507150 Msa0629980:intron 50.0%
!! AGATGTGGCTCTAGAAGGAG+GGG + chr4_3:11507294-11507313 None:intergenic 50.0%
TAGTGATGCTCACCTGTGGT+AGG + chr4_3:11508108-11508127 None:intergenic 50.0%
TCTGTCATTGTTCGACACCC+AGG + chr4_3:11508662-11508681 None:intergenic 50.0%
!! TGGGTGTCGAACAATGACAG+AGG - chr4_3:11508661-11508680 Msa0629980:intron 50.0%
GCTTCTTTCTACTACGGCCT+TGG - chr4_3:11508790-11508809 Msa0629980:intron 50.0%
GGCCTTGGTCCTTCTCTTAT+CGG - chr4_3:11508805-11508824 Msa0629980:intron 50.0%
! AAGAGATGCTGAAAGCACGG+CGG + chr4_3:11509026-11509045 None:intergenic 50.0%
GGCAAGAGATGCTGAAAGCA+CGG + chr4_3:11509029-11509048 None:intergenic 50.0%
TGTCTTCGAACTGTGTCCAG+AGG + chr4_3:11509067-11509086 None:intergenic 50.0%
! GCAGGTATTGTGGCACAAGA+TGG - chr4_3:11509379-11509398 Msa0629980:intron 50.0%
!! GGAGTTATTGGCTTGTACCG+AGG - chr4_3:11509400-11509419 Msa0629980:intron 50.0%
CCTTCTCACTAGCAGCAATC+AGG + chr4_3:11509780-11509799 None:intergenic 50.0%
CCTGATTGCTGCTAGTGAGA+AGG - chr4_3:11509777-11509796 Msa0629980:CDS 50.0%
ATTGGGGATGTTACGCCACG+TGG + chr4_3:11505851-11505870 None:intergenic 55.0%
AACGACGTCGTTAGAGGTGG+TGG + chr4_3:11505878-11505897 None:intergenic 55.0%
GGGTGAAACGACGTCGTTAG+AGG + chr4_3:11505884-11505903 None:intergenic 55.0%
! TGCGTCGGTGAAAGTGAAGG+TGG + chr4_3:11505926-11505945 None:intergenic 55.0%
! GGTTGCGTCGGTGAAAGTGA+AGG + chr4_3:11505929-11505948 None:intergenic 55.0%
!! AGGAATGGTGGTGGTTGCGT+CGG + chr4_3:11505941-11505960 None:intergenic 55.0%
!! TTTGGTTTGGGAGGTGGAGC+GGG + chr4_3:11505977-11505996 None:intergenic 55.0%
!! GTTTGGTTTGGGAGGTGGAG+CGG + chr4_3:11505978-11505997 None:intergenic 55.0%
!! GTTCGGTTTGGTTTGGGAGG+TGG + chr4_3:11505983-11506002 None:intergenic 55.0%
GTCGGGGCGAATTCGTTGTT+CGG + chr4_3:11506000-11506019 None:intergenic 55.0%
TTAAGAAGCTGAGCCGGCGT+CGG + chr4_3:11506018-11506037 None:intergenic 55.0%
GGGTGGTTAAGAAGCTGAGC+CGG + chr4_3:11506024-11506043 None:intergenic 55.0%
!! GACGGTTTTAGCAGCAGCTC+CGG + chr4_3:11506106-11506125 None:intergenic 55.0%
CAGACTCATGGAGTGCGGAT+TGG - chr4_3:11506244-11506263 Msa0629980:intron 55.0%
! ACTGTCGGTTATGCCGTGCT+TGG - chr4_3:11506726-11506745 Msa0629980:intron 55.0%
! CTGTCGGTTATGCCGTGCTT+GGG - chr4_3:11506727-11506746 Msa0629980:intron 55.0%
CTGGAAGGGTAACCTACCAC+AGG - chr4_3:11508093-11508112 Msa0629980:intron 55.0%
GTTGTCGGAAGACTTGCAGC+AGG - chr4_3:11508369-11508388 Msa0629980:intron 55.0%
! CTTGCAGCAGGTGCTTTTGC+AGG - chr4_3:11508381-11508400 Msa0629980:intron 55.0%
CGCCTTGAGCATGGTAAGAG+AGG - chr4_3:11508759-11508778 Msa0629980:intron 55.0%
CGAACAAAACCGTCGCCACG+TGG - chr4_3:11505833-11505852 Msa0629980:three_prime_UTR 60.0%
GATGTTACGCCACGTGGCGA+CGG + chr4_3:11505845-11505864 None:intergenic 60.0%
GAGCGGGTGGCGAATTTGGA+AGG + chr4_3:11505961-11505980 None:intergenic 60.0%
TAAGAAGCTGAGCCGGCGTC+GGG + chr4_3:11506017-11506036 None:intergenic 60.0%
ACAAGTGCGACGACGGCGAT+CGG + chr4_3:11506045-11506064 None:intergenic 60.0%
! CTCAGAGCTTGCTCTGCCGA+TGG - chr4_3:11507212-11507231 Msa0629980:CDS 60.0%
GGTGGAGCGGGTGGCGAATT+TGG + chr4_3:11505965-11505984 None:intergenic 65.0%
CAACGAATTCGCCCCGACGC+CGG - chr4_3:11506002-11506021 Msa0629980:exon 65.0%
AAGAAGCTGAGCCGGCGTCG+GGG + chr4_3:11506016-11506035 None:intergenic 65.0%
CAAGTGCGACGACGGCGATC+GGG + chr4_3:11506044-11506063 None:intergenic 65.0%
GGTTTGGGAGGTGGAGCGGG+TGG + chr4_3:11505974-11505993 None:intergenic 70.0%
GTGCGACGACGGCGATCGGG+TGG + chr4_3:11506041-11506060 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 11505721 11510145 11505721 ID=Msa0629980;Name=Msa0629980
chr4_3 mRNA 11505721 11510145 11505721 ID=Msa0629980-mRNA-1;Parent=Msa0629980;Name=Msa0629980-mRNA-1;_AED=0.18;_eAED=0.18;_QI=99|0.88|0.9|1|1|1|10|293|370
chr4_3 exon 11505721 11506122 11505721 ID=Msa0629980-mRNA-1:exon:3469;Parent=Msa0629980-mRNA-1
chr4_3 exon 11506405 11506483 11506405 ID=Msa0629980-mRNA-1:exon:3468;Parent=Msa0629980-mRNA-1
chr4_3 exon 11506730 11506899 11506730 ID=Msa0629980-mRNA-1:exon:3467;Parent=Msa0629980-mRNA-1
chr4_3 exon 11506997 11507109 11506997 ID=Msa0629980-mRNA-1:exon:3466;Parent=Msa0629980-mRNA-1
chr4_3 exon 11507184 11507252 11507184 ID=Msa0629980-mRNA-1:exon:3465;Parent=Msa0629980-mRNA-1
chr4_3 exon 11507476 11507529 11507476 ID=Msa0629980-mRNA-1:exon:3464;Parent=Msa0629980-mRNA-1
chr4_3 exon 11507611 11507667 11507611 ID=Msa0629980-mRNA-1:exon:3463;Parent=Msa0629980-mRNA-1
chr4_3 exon 11507752 11507814 11507752 ID=Msa0629980-mRNA-1:exon:3462;Parent=Msa0629980-mRNA-1
chr4_3 exon 11509563 11509619 11509563 ID=Msa0629980-mRNA-1:exon:3461;Parent=Msa0629980-mRNA-1
chr4_3 exon 11509705 11510145 11509705 ID=Msa0629980-mRNA-1:exon:3460;Parent=Msa0629980-mRNA-1
chr4_3 five_prime_UTR 11510047 11510145 11510047 ID=Msa0629980-mRNA-1:five_prime_utr;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11509705 11510046 11509705 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11509563 11509619 11509563 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11507752 11507814 11507752 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11507611 11507667 11507611 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11507476 11507529 11507476 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11507184 11507252 11507184 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11506997 11507109 11506997 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11506730 11506899 11506730 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11506405 11506483 11506405 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 CDS 11506014 11506122 11506014 ID=Msa0629980-mRNA-1:cds;Parent=Msa0629980-mRNA-1
chr4_3 three_prime_UTR 11505721 11506013 11505721 ID=Msa0629980-mRNA-1:three_prime_utr;Parent=Msa0629980-mRNA-1
Gene Sequence

>Msa0629980

ATGACAGACTCAACGAACAAAACCGTCGCCACGTGGCGTAACATCCCCAATTTAACCACCACCTCTAACGACGTCGTTTCACCCAACCACCTCTTCAACAACTCCACCTTCACTTTCACCGACGCAACCACCACCATTCCTTCCAAATTCGCCACCCGCTCCACCTCCCAAACCAAACCGAACAACGAATTCGCCCCGACGCCGGCTCAGCTTCTTAACCACCCGATCGCCGTCGTCGCACTTGTTCCCAAAGATGCTGCATTGTTTCTCGCTGGTGCTATTGCCGGAGCTGCTGCTAAAACCGTCACTGCTCCACTTGATCGAATCAAACTTCTCATGCAGACTCATGGAGTGCGGATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTCATTGAGGCCATATCAATGATAGGGAAGGAAGAAGGCATTATAGGTTACTGGAAGGGTAACCTACCACAGGTGATTAGGGTTATACCTTATAGTGCTGTTCAGCTCTTTGCTTATGAAATTTATAAGAAAATATTCAAGGAAAAAACGATGAGCTCTATGTTGTCGGAAGACTTGCAGCAGATAACTTACCCTTTAGATGTCCTGAGATTACGATTAGCTGTTGAACCTGGGTGTCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAGAGAGGAAGGTTTTGCTTCTTTCTACTACGGCCTTGGTCCTTCTCTTATCGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACCGCCGTGCTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGACACAGTTCGAAGACAGATGCAACTGAAGGGTACACCTTATAAGACAGTATTAGATGCCATTTCAGGTATTGTGGCACAAGATGGAGTTATTGGCTTGTACCGAGGATTTGTGCCCAATGCTTTAAAAAACCTACCAAACAGCAGCATCAGGCTTACAACATATGACATTGTCAAACGCCTGATTGCTGCTAGTGAGAAGGAGTTTCAAACAATTGCAGAGGAAAACCGCAACAAACTAAAGAAATGCCCATAA
Protein sequence

>Msa0629980

MTDSTNKTVATWRNIPNLTTTSNDVVSPNHLFNNSTFTFTDATTTIPSKFATRSTSQTKPNNEFAPTPAQLLNHPIAVVALVPKDAALFLAGAIAGAAAKTVTAPLDRIKLLMQTHGVRIGQESAKKTIGFIEAISMIGKEEGIIGYWKGNLPQVIRVIPYSAVQLFAYEIYKKIFKEKTMSSMLSEDLQQITYPLDVLRLRLAVEPGCRTMTEVALSMVREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVIGLYRGFVPNALKNLPNSSIRLTTYDIVKRLIAASEKEFQTIAEENRNKLKKCP*