Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069770 | XP_003624460.1 | 94.604 | 278 | 11 | 2 | 18 | 293 | 13 | 288 | 3.25e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069770 | sp|Q9LYV6|GEML5_ARATH | 60.714 | 252 | 83 | 3 | 32 | 282 | 27 | 263 | 1.44e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069770 | G7KW78 | 94.604 | 278 | 11 | 2 | 18 | 293 | 13 | 288 | 1.55e-180 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa1069770 | 0.806642 | 7.448912e-50 | -8.615850e-47 |
| Msa0076640 | Msa1069770 | 0.800244 | 1.578734e-48 | -8.615850e-47 |
| Msa0100840 | Msa1069770 | -0.806518 | 7.914074e-50 | -8.615850e-47 |
| Msa0749500 | Msa1069770 | 0.800522 | 1.385401e-48 | -8.615850e-47 |
| Msa0749510 | Msa1069770 | 0.802301 | 5.986249e-49 | -8.615850e-47 |
| Msa0831430 | Msa1069770 | 0.808559 | 2.918950e-50 | -8.615850e-47 |
| Msa0169050 | Msa1069770 | 0.800454 | 1.430148e-48 | -8.615850e-47 |
| Msa0481770 | Msa1069770 | 0.823648 | 1.236741e-53 | -8.615850e-47 |
| Msa1069770 | Msa1120090 | 0.873687 | 1.212588e-67 | -8.615850e-47 |
| Msa1069770 | Msa1331950 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa1069770 | Msa1432180 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa1069770 | Msa1453600 | 0.815563 | 8.672664e-52 | -8.615850e-47 |
| Msa0253120 | Msa1069770 | 0.804688 | 1.915304e-49 | -8.615850e-47 |
| Msa0276610 | Msa1069770 | -0.806452 | 8.171314e-50 | -8.615850e-47 |
| Msa0882430 | Msa1069770 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0947520 | Msa1069770 | 0.823457 | 1.371090e-53 | -8.615850e-47 |
| Msa0979050 | Msa1069770 | 0.800207 | 1.605796e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069770 | MtrunA17_Chr7g0251801 | 94.604 | 278 | 11 | 2 | 18 | 293 | 13 | 288 | 0.0 | 508 |
| Msa1069770 | MtrunA17_Chr3g0133221 | 47.475 | 198 | 94 | 3 | 91 | 279 | 59 | 255 | 4.88e-61 | 194 |
| Msa1069770 | MtrunA17_Chr8g0367701 | 48.125 | 160 | 82 | 1 | 120 | 279 | 109 | 267 | 1.12e-52 | 173 |
| Msa1069770 | MtrunA17_Chr2g0315771 | 41.176 | 204 | 107 | 3 | 92 | 282 | 25 | 228 | 3.22e-48 | 160 |
| Msa1069770 | MtrunA17_Chr6g0481891 | 39.394 | 198 | 111 | 2 | 84 | 280 | 8 | 197 | 2.76e-45 | 152 |
| Msa1069770 | MtrunA17_Chr1g0162171 | 38.857 | 175 | 107 | 0 | 107 | 281 | 48 | 222 | 3.96e-45 | 152 |
| Msa1069770 | MtrunA17_Chr1g0212091 | 38.547 | 179 | 110 | 0 | 101 | 279 | 40 | 218 | 1.78e-44 | 150 |
| Msa1069770 | MtrunA17_Chr8g0388871 | 41.975 | 162 | 93 | 1 | 120 | 280 | 22 | 183 | 3.84e-41 | 140 |
| Msa1069770 | MtrunA17_Chr1g0212171 | 35.758 | 165 | 106 | 0 | 117 | 281 | 56 | 220 | 4.14e-37 | 131 |
| Msa1069770 | MtrunA17_Chr1g0212181 | 36.810 | 163 | 103 | 0 | 119 | 281 | 55 | 217 | 4.40e-36 | 129 |
| Msa1069770 | MtrunA17_Chr1g0212121 | 37.423 | 163 | 102 | 0 | 119 | 281 | 55 | 217 | 5.25e-35 | 125 |
| Msa1069770 | MtrunA17_Chr1g0212111 | 50.926 | 108 | 53 | 0 | 174 | 281 | 49 | 156 | 2.54e-28 | 107 |
| Msa1069770 | MtrunA17_Chr1g0212131 | 46.552 | 58 | 31 | 0 | 224 | 281 | 6 | 63 | 4.33e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069770 | AT5G13200.1 | 60.714 | 252 | 83 | 3 | 32 | 282 | 27 | 263 | 1.46e-108 | 316 |
| Msa1069770 | AT5G13200.2 | 60.204 | 196 | 62 | 3 | 32 | 226 | 27 | 207 | 3.12e-78 | 237 |
| Msa1069770 | AT2G22475.1 | 44.670 | 197 | 98 | 3 | 93 | 279 | 96 | 291 | 8.75e-59 | 190 |
| Msa1069770 | AT1G28200.1 | 46.429 | 196 | 94 | 3 | 91 | 279 | 63 | 254 | 1.38e-58 | 188 |
| Msa1069770 | AT1G28200.2 | 46.429 | 196 | 94 | 3 | 91 | 279 | 63 | 254 | 1.38e-58 | 188 |
| Msa1069770 | AT5G23370.1 | 41.875 | 160 | 93 | 0 | 121 | 280 | 55 | 214 | 4.27e-43 | 147 |
| Msa1069770 | AT5G08350.1 | 39.326 | 178 | 103 | 1 | 103 | 280 | 41 | 213 | 5.82e-43 | 147 |
| Msa1069770 | AT5G23360.1 | 41.615 | 161 | 94 | 0 | 121 | 281 | 47 | 207 | 1.28e-42 | 145 |
| Msa1069770 | AT5G23350.1 | 42.138 | 159 | 92 | 0 | 121 | 279 | 55 | 213 | 3.46e-42 | 145 |
| Msa1069770 | AT2G22475.2 | 43.537 | 147 | 72 | 3 | 93 | 229 | 96 | 241 | 8.11e-38 | 134 |
| Msa1069770 | AT4G40100.1 | 36.548 | 197 | 78 | 5 | 94 | 279 | 56 | 216 | 8.13e-38 | 134 |
| Msa1069770 | AT4G01600.1 | 34.906 | 212 | 129 | 3 | 77 | 279 | 13 | 224 | 8.49e-38 | 134 |
| Msa1069770 | AT4G01600.3 | 39.130 | 161 | 97 | 1 | 120 | 279 | 25 | 185 | 8.45e-36 | 127 |
| Msa1069770 | AT4G01600.2 | 33.816 | 207 | 133 | 3 | 77 | 279 | 13 | 219 | 8.91e-36 | 128 |
Find 84 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATATGTTTGATTCT+TGG | 0.179773 | 7_2:-65580629 | Msa1069770:CDS |
| CTGTATCATTTCTTCCTCTA+AGG | 0.221197 | 7_2:-65577998 | Msa1069770:three_prime_UTR |
| CATCAGGTGATGATTGGTTT+TGG | 0.254420 | 7_2:+65580922 | None:intergenic |
| ACGATTGTGCCAGATGTTAT+TGG | 0.273073 | 7_2:+65580584 | None:intergenic |
| CTGTGATTTGCAGTTAAAAC+AGG | 0.342749 | 7_2:-65579419 | Msa1069770:intron |
| GGTGGTGCTGGTGATGCAAA+TGG | 0.353423 | 7_2:+65580894 | None:intergenic |
| CAAACACATTCCAAGAGAAA+TGG | 0.360284 | 7_2:+65578153 | None:intergenic |
| TTCATTGTCTTCAGCTGCAA+TGG | 0.365963 | 7_2:-65579393 | Msa1069770:CDS |
| ATCATGCAACAACTGAGAAC+TGG | 0.379902 | 7_2:-65580839 | Msa1069770:CDS |
| TGTTACCTTTCAACAACAAC+AGG | 0.385011 | 7_2:-65579263 | Msa1069770:CDS |
| TTGTTGTCTGGATGACTACT+TGG | 0.395182 | 7_2:+65580786 | None:intergenic |
| ACAGAAATGGTTGGATTTGA+AGG | 0.396232 | 7_2:+65581069 | None:intergenic |
| AGGAGACAATACACTGTTGT+TGG | 0.401789 | 7_2:+65581121 | None:intergenic |
| AAACACATTCCAAGAGAAAT+GGG | 0.404925 | 7_2:+65578154 | None:intergenic |
| CACCCTCCGGCCAAGTGACT+TGG | 0.405041 | 7_2:-65579166 | Msa1069770:CDS |
| TCATTGTCTTCAGCTGCAAT+GGG | 0.409086 | 7_2:-65579392 | Msa1069770:CDS |
| GCCCGTCAACTGTCACAATC+TGG | 0.413594 | 7_2:+65578307 | None:intergenic |
| ACAACAACAGGGCCTGTTGC+AGG | 0.417937 | 7_2:-65579251 | Msa1069770:CDS |
| GATGATGATGGTGGTGGTGC+TGG | 0.422551 | 7_2:+65580882 | None:intergenic |
| ATGGTGCCTTTAGCGAAGAT+TGG | 0.428167 | 7_2:-65578378 | Msa1069770:CDS |
| AAGTAAAGGGTTCCTGCAAC+AGG | 0.429659 | 7_2:+65579239 | None:intergenic |
| ATGAATATCTGATAAGTAAA+GGG | 0.435046 | 7_2:+65579226 | None:intergenic |
| ACTGTTCCAATCTTCGCTAA+AGG | 0.459341 | 7_2:+65578372 | None:intergenic |
| AAATTGCAATAACACCTTAG+AGG | 0.462985 | 7_2:+65577984 | None:intergenic |
| TGTTCATGTTTGTATGTAAG+AGG | 0.483355 | 7_2:+65580979 | None:intergenic |
| TTACAAACTGCTTCTGCTGA+TGG | 0.483740 | 7_2:-65580753 | Msa1069770:CDS |
| GATGAATATCTGATAAGTAA+AGG | 0.486525 | 7_2:+65579225 | None:intergenic |
| GCACGTATGGATGATCTTGC+TGG | 0.491754 | 7_2:+65580697 | None:intergenic |
| GTGGTGCTGGTGATGCAAAT+GGG | 0.493613 | 7_2:+65580895 | None:intergenic |
| ATCCAGATTGTGACAGTTGA+CGG | 0.497932 | 7_2:-65578309 | Msa1069770:CDS |
| TCATGCAACAACTGAGAACT+GGG | 0.509838 | 7_2:-65580838 | Msa1069770:CDS |
| CAAGGTTGAATGAATTATGT+AGG | 0.510555 | 7_2:+65581044 | None:intergenic |
| TAAGCCTAGCAGTAGTCCTA+TGG | 0.515052 | 7_2:-65580658 | Msa1069770:CDS |
| AAGCTACCGCCAATAACATC+TGG | 0.518887 | 7_2:-65580593 | Msa1069770:CDS |
| GGATGACTACTTGGTACAGC+TGG | 0.522699 | 7_2:+65580795 | None:intergenic |
| CTCCAAGTCACTTGGCCGGA+GGG | 0.523356 | 7_2:+65579164 | None:intergenic |
| CTACTGCTAGGCTTATCAAC+AGG | 0.523543 | 7_2:+65580666 | None:intergenic |
| GAACTGGGGAACACATATGA+TGG | 0.527532 | 7_2:-65580823 | Msa1069770:CDS |
| AATTATGTAGGAAACAGAAA+TGG | 0.528984 | 7_2:+65581056 | None:intergenic |
| TGATTCTCCCTCATGATCAC+AGG | 0.530214 | 7_2:+65578345 | None:intergenic |
| TCCAGATTGTGACAGTTGAC+GGG | 0.531799 | 7_2:-65578308 | Msa1069770:CDS |
| TTGAGTTTCACTGCACCCTC+CGG | 0.532381 | 7_2:-65579179 | Msa1069770:CDS |
| ACAGGACTGTGTTGCACGTA+TGG | 0.537458 | 7_2:+65580684 | None:intergenic |
| GAGGGTGCAGTGAAACTCAA+AGG | 0.539333 | 7_2:+65579182 | None:intergenic |
| TCAGTTGTTGCATGATTCTG+TGG | 0.539677 | 7_2:+65580846 | None:intergenic |
| CAGAAATGGTTGGATTTGAA+GGG | 0.544212 | 7_2:+65581070 | None:intergenic |
| CAGGCCCTGTTGTTGTTGAA+AGG | 0.548045 | 7_2:+65579258 | None:intergenic |
| GACTAACTAGTTCTTCAAGC+TGG | 0.556433 | 7_2:-65578184 | Msa1069770:exon |
| CAGTTAATCCTGTGATCATG+AGG | 0.557822 | 7_2:-65578353 | Msa1069770:CDS |
| ATTGCAGCTGAAGACAATGA+AGG | 0.560885 | 7_2:+65579395 | None:intergenic |
| ACAAGGACAACCTCAGCCTC+AGG | 0.564940 | 7_2:-65580730 | Msa1069770:CDS |
| AGGGTGCAGTGAAACTCAAA+GGG | 0.565964 | 7_2:+65579183 | None:intergenic |
| TTGAAGAACTAGTTAGTCGT+TGG | 0.566224 | 7_2:+65578189 | None:intergenic |
| ATGTAGGAAACAGAAATGGT+TGG | 0.569671 | 7_2:+65581060 | None:intergenic |
| AGTCGTTGGTACGGCTACGC+CGG | 0.571636 | 7_2:+65578203 | None:intergenic |
| GTGATGAGAGATTCAGAACA+AGG | 0.575104 | 7_2:+65581026 | None:intergenic |
| GTAGCTCCAAGTCACTTGGC+CGG | 0.578164 | 7_2:+65579160 | None:intergenic |
| GAACTAGTTAGTCGTTGGTA+CGG | 0.588752 | 7_2:+65578194 | None:intergenic |
| TGTAGTAGCTCCAAGTCACT+TGG | 0.593028 | 7_2:+65579156 | None:intergenic |
| ACTGCTTCTGCTGATGGACA+AGG | 0.594269 | 7_2:-65580747 | Msa1069770:CDS |
| ATTGTGCCAGATGTTATTGG+CGG | 0.596019 | 7_2:+65580587 | None:intergenic |
| GTTGTTGCATGATTCTGTGG+TGG | 0.600877 | 7_2:+65580849 | None:intergenic |
| ATATGAAGAATTGATTCCAT+AGG | 0.605924 | 7_2:+65580642 | None:intergenic |
| TAGTAATGAACCTGAGGCTG+AGG | 0.610263 | 7_2:+65580720 | None:intergenic |
| GATTCCATAGGACTACTGCT+AGG | 0.615191 | 7_2:+65580654 | None:intergenic |
| TAAAGCAGTAAAGAACCTAT+CGG | 0.619248 | 7_2:-65578250 | Msa1069770:CDS |
| AACTGGGGAACACATATGAT+GGG | 0.620571 | 7_2:-65580822 | Msa1069770:CDS |
| GGAACAGATGATGATGATGA+TGG | 0.625856 | 7_2:+65580870 | None:intergenic |
| GCAGTAAAGAACCTATCGGA+AGG | 0.626352 | 7_2:-65578246 | Msa1069770:CDS |
| AGTGACTTGGAGCTACTACA+AGG | 0.629250 | 7_2:-65579153 | Msa1069770:intron |
| GTTAAGCAAAGAAGCATAGT+CGG | 0.633624 | 7_2:-65581170 | Msa1069770:five_prime_UTR |
| GACTGTAAAAGCGATATCAG+AGG | 0.638142 | 7_2:-65579357 | Msa1069770:CDS |
| AATGTGAGATGCCTTCCGAT+AGG | 0.639873 | 7_2:+65578235 | None:intergenic |
| GCAAAGAAGCATAGTCGGTG+TGG | 0.644231 | 7_2:-65581165 | Msa1069770:five_prime_UTR |
| ACTGTAAAAGCGATATCAGA+GGG | 0.644668 | 7_2:-65579356 | Msa1069770:CDS |
| TGCTGGTAGTAATGAACCTG+AGG | 0.645046 | 7_2:+65580714 | None:intergenic |
| GTTACCTTTCAACAACAACA+GGG | 0.667635 | 7_2:-65579262 | Msa1069770:CDS |
| ACATATATCAATATTAACTG+TGG | 0.669725 | 7_2:+65578022 | None:intergenic |
| AGTTAATCCTGTGATCATGA+GGG | 0.672652 | 7_2:-65578352 | Msa1069770:CDS |
| TGTGATTTGCAGTTAAAACA+GGG | 0.680349 | 7_2:-65579418 | Msa1069770:intron |
| CATTGTCTTCAGCTGCAATG+GGG | 0.684360 | 7_2:-65579391 | Msa1069770:CDS |
| AACACATTCCAAGAGAAATG+GGG | 0.695630 | 7_2:+65578155 | None:intergenic |
| GTAAAAGCGATATCAGAGGG+TGG | 0.696098 | 7_2:-65579353 | Msa1069770:CDS |
| CATGCAACAACTGAGAACTG+GGG | 0.729327 | 7_2:-65580837 | Msa1069770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAATTGAATTTTATG+AGG | - | chr7_2:65578780-65578799 | Msa1069770:intron | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | - | chr7_2:65579193-65579212 | Msa1069770:CDS | 10.0% |
| !!! | ATAAAATATGAAAATAGTTT+TGG | + | chr7_2:65579431-65579450 | None:intergenic | 10.0% |
| !!! | TGTATTTATGTTTTATATTA+TGG | + | chr7_2:65580627-65580646 | None:intergenic | 10.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | - | chr7_2:65579253-65579272 | Msa1069770:CDS | 15.0% |
| !! | GATGATAATTTCAATATTAA+GGG | + | chr7_2:65579377-65579396 | None:intergenic | 15.0% |
| !! | AGATGATAATTTCAATATTA+AGG | + | chr7_2:65579378-65579397 | None:intergenic | 15.0% |
| !!! | TTTCATATTTTATACTAAGT+TGG | - | chr7_2:65579438-65579457 | Msa1069770:intron | 15.0% |
| !!! | AATTTTTATTAAAATTGTGG+TGG | + | chr7_2:65579596-65579615 | None:intergenic | 15.0% |
| !! | CTGTTCATAAATATAATAAA+CGG | + | chr7_2:65580016-65580035 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATAGTTTA+AGG | + | chr7_2:65580689-65580708 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTTGTTTGAAA+GGG | - | chr7_2:65581015-65581034 | Msa1069770:five_prime_UTR | 15.0% |
| !!! | TTGATTATGTAAATTTTGTA+GGG | - | chr7_2:65581070-65581089 | Msa1069770:five_prime_UTR | 15.0% |
| !! | ATCAATCTATCTAAATATAG+AGG | + | chr7_2:65578603-65578622 | None:intergenic | 20.0% |
| !! | CATAAACACTTATTAGTATA+AGG | + | chr7_2:65578859-65578878 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | + | chr7_2:65579190-65579209 | None:intergenic | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | chr7_2:65579226-65579245 | Msa1069770:CDS | 20.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | - | chr7_2:65579351-65579370 | Msa1069770:CDS | 20.0% |
| !!! | TATATATCTATGAGAGTTTT+TGG | - | chr7_2:65579509-65579528 | Msa1069770:intron | 20.0% |
| !!! | ATATATCTATGAGAGTTTTT+GGG | - | chr7_2:65579510-65579529 | Msa1069770:intron | 20.0% |
| !! | ATGAATATCTGATAAGTAAA+GGG | + | chr7_2:65579916-65579935 | None:intergenic | 20.0% |
| !!! | AAAATTTCTATTACACCTTT+TGG | - | chr7_2:65580656-65580675 | Msa1069770:CDS | 20.0% |
| !! | ATTGAAATGAATGTTTGATA+TGG | - | chr7_2:65580701-65580720 | Msa1069770:CDS | 20.0% |
| !!! | GTTTTAATTTCTTGTTTGAA+AGG | - | chr7_2:65581014-65581033 | Msa1069770:five_prime_UTR | 20.0% |
| !!! | GTTGATTATGTAAATTTTGT+AGG | - | chr7_2:65581069-65581088 | Msa1069770:five_prime_UTR | 20.0% |
| !! | ACATATATCAATATTAACTG+TGG | + | chr7_2:65581120-65581139 | None:intergenic | 20.0% |
| !!! | TAACATGTTACGTGTTTTTA+AGG | + | chr7_2:65578041-65578060 | None:intergenic | 25.0% |
| ! | AATTATGTAGGAAACAGAAA+TGG | + | chr7_2:65578086-65578105 | None:intergenic | 25.0% |
| !! | ATATGAAGAATTGATTCCAT+AGG | + | chr7_2:65578500-65578519 | None:intergenic | 25.0% |
| ! | TTCTTCATATGTTTGATTCT+TGG | - | chr7_2:65578510-65578529 | Msa1069770:intron | 25.0% |
| !! | TTAAGTTTGTTTATCCAGAT+AGG | - | chr7_2:65578893-65578912 | Msa1069770:intron | 25.0% |
| ! | ACTCTCATAGATATATAGTA+AGG | + | chr7_2:65579506-65579525 | None:intergenic | 25.0% |
| ! | GATGAATATCTGATAAGTAA+AGG | + | chr7_2:65579917-65579936 | None:intergenic | 25.0% |
| !!! | CTATTGAACAAATTTTGACA+AGG | + | chr7_2:65580040-65580059 | None:intergenic | 25.0% |
| !!! | TACAATAGTCAATTTGTTGT+TGG | - | chr7_2:65580237-65580256 | Msa1069770:intron | 25.0% |
| !! | TCATTTTCTAACTTCAAAAC+TGG | - | chr7_2:65580308-65580327 | Msa1069770:intron | 25.0% |
| !! | TTTTATGCTAACAATATTGC+TGG | + | chr7_2:65580358-65580377 | None:intergenic | 25.0% |
| ! | TAATCCACTCAAGTAATTTA+CGG | + | chr7_2:65580469-65580488 | None:intergenic | 25.0% |
| !!! | TAAATTACTTGAGTGGATTA+GGG | - | chr7_2:65580469-65580488 | Msa1069770:intron | 25.0% |
| !!! | GACTTGTTATATTGTGTAAT+AGG | - | chr7_2:65580736-65580755 | Msa1069770:CDS | 25.0% |
| ! | TTATATTGTGTAATAGGTGA+TGG | - | chr7_2:65580742-65580761 | Msa1069770:CDS | 25.0% |
| CAAGGTTGAATGAATTATGT+AGG | + | chr7_2:65578098-65578117 | None:intergenic | 30.0% | |
| TGTTCATGTTTGTATGTAAG+AGG | + | chr7_2:65578163-65578182 | None:intergenic | 30.0% | |
| TTATGAGATGCTAGACTATT+AGG | + | chr7_2:65578921-65578940 | None:intergenic | 30.0% | |
| TAGTCTAGCATCTCATAATT+TGG | - | chr7_2:65578923-65578942 | Msa1069770:intron | 30.0% | |
| !!! | TTTTTTGCGTGAGTCAATTT+AGG | - | chr7_2:65579008-65579027 | Msa1069770:intron | 30.0% |
| ! | TTTTTGCGTGAGTCAATTTA+GGG | - | chr7_2:65579009-65579028 | Msa1069770:intron | 30.0% |
| AGATATATAGTAAGGAGCTT+AGG | + | chr7_2:65579498-65579517 | None:intergenic | 30.0% | |
| ! | CAAAGTTCTGATAATATCCA+CGG | + | chr7_2:65579562-65579581 | None:intergenic | 30.0% |
| ! | TGTGATTTGCAGTTAAAACA+GGG | - | chr7_2:65579721-65579740 | Msa1069770:intron | 30.0% |
| ! | TTTGTTCAATAGAGCATTAG+AGG | - | chr7_2:65580048-65580067 | Msa1069770:intron | 30.0% |
| ! | TTGTTCAATAGAGCATTAGA+GGG | - | chr7_2:65580049-65580068 | Msa1069770:intron | 30.0% |
| !! | TATATCGAGCATTGATAAGT+AGG | - | chr7_2:65580097-65580116 | Msa1069770:intron | 30.0% |
| ! | TTGTTGTTGGTAGACATAAT+TGG | - | chr7_2:65580250-65580269 | Msa1069770:intron | 30.0% |
| AAAATGAACACATGAGAGAA+CGG | + | chr7_2:65580295-65580314 | None:intergenic | 30.0% | |
| ! | GTAAATTACTTGAGTGGATT+AGG | - | chr7_2:65580468-65580487 | Msa1069770:intron | 30.0% |
| ACGTCATATATGTAGTACTA+CGG | - | chr7_2:65580505-65580524 | Msa1069770:intron | 30.0% | |
| TCACATATTGACACAAAAGA+GGG | + | chr7_2:65580586-65580605 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGAACCTAT+CGG | - | chr7_2:65580889-65580908 | Msa1069770:CDS | 30.0% | |
| AAACACATTCCAAGAGAAAT+GGG | + | chr7_2:65580988-65581007 | None:intergenic | 30.0% | |
| AAATTGCAATAACACCTTAG+AGG | + | chr7_2:65581158-65581177 | None:intergenic | 30.0% | |
| ! | GTTAAGCAAAGAAGCATAGT+CGG | - | chr7_2:65577969-65577988 | Msa1069770:three_prime_UTR | 35.0% |
| CAGAAATGGTTGGATTTGAA+GGG | + | chr7_2:65578072-65578091 | None:intergenic | 35.0% | |
| ACAGAAATGGTTGGATTTGA+AGG | + | chr7_2:65578073-65578092 | None:intergenic | 35.0% | |
| ATGTAGGAAACAGAAATGGT+TGG | + | chr7_2:65578082-65578101 | None:intergenic | 35.0% | |
| !!! | AAAGCTGCTTTTTTGTTGTC+TGG | + | chr7_2:65578368-65578387 | None:intergenic | 35.0% |
| ! | AATCCTTCTAGAAGTAAGGA+GGG | + | chr7_2:65578646-65578665 | None:intergenic | 35.0% |
| ! | AGTCAATCCTTCTAGAAGTA+AGG | + | chr7_2:65578650-65578669 | None:intergenic | 35.0% |
| CTTACTTTCATAAGCTCTCT+AGG | - | chr7_2:65578740-65578759 | Msa1069770:intron | 35.0% | |
| TAGACTATTAGGTTCCTATC+TGG | + | chr7_2:65578910-65578929 | None:intergenic | 35.0% | |
| ! | TATTAAGGGCCTGTTTGTTT+TGG | + | chr7_2:65579363-65579382 | None:intergenic | 35.0% |
| TTTGCCTAACATACACATGA+AGG | - | chr7_2:65579656-65579675 | Msa1069770:intron | 35.0% | |
| TTGCCTAACATACACATGAA+GGG | - | chr7_2:65579657-65579676 | Msa1069770:intron | 35.0% | |
| ! | CTGTGATTTGCAGTTAAAAC+AGG | - | chr7_2:65579720-65579739 | Msa1069770:intron | 35.0% |
| ACTGTAAAAGCGATATCAGA+GGG | - | chr7_2:65579783-65579802 | Msa1069770:intron | 35.0% | |
| !!! | GTCTTTTTCAGCTTCTCATT+TGG | + | chr7_2:65579849-65579868 | None:intergenic | 35.0% |
| TGTTACCTTTCAACAACAAC+AGG | - | chr7_2:65579876-65579895 | Msa1069770:intron | 35.0% | |
| GTTACCTTTCAACAACAACA+GGG | - | chr7_2:65579877-65579896 | Msa1069770:intron | 35.0% | |
| TAGACATAATTGGCCGAATT+CGG | - | chr7_2:65580260-65580279 | Msa1069770:intron | 35.0% | |
| AAATGAACACATGAGAGAAC+GGG | + | chr7_2:65580294-65580313 | None:intergenic | 35.0% | |
| AGTTCCGTAAATTACTTGAG+TGG | - | chr7_2:65580462-65580481 | Msa1069770:intron | 35.0% | |
| AAGCTGGTATTGTTGTAATC+TGG | + | chr7_2:65580532-65580551 | None:intergenic | 35.0% | |
| CTCACATATTGACACAAAAG+AGG | + | chr7_2:65580587-65580606 | None:intergenic | 35.0% | |
| ! | GTTTAAGGCTCTTTACCAAA+AGG | + | chr7_2:65580674-65580693 | None:intergenic | 35.0% |
| AGTTAATCCTGTGATCATGA+GGG | - | chr7_2:65580787-65580806 | Msa1069770:CDS | 35.0% | |
| TTGAAGAACTAGTTAGTCGT+TGG | + | chr7_2:65580953-65580972 | None:intergenic | 35.0% | |
| AACACATTCCAAGAGAAATG+GGG | + | chr7_2:65580987-65581006 | None:intergenic | 35.0% | |
| CAAACACATTCCAAGAGAAA+TGG | + | chr7_2:65580989-65581008 | None:intergenic | 35.0% | |
| CTGTATCATTTCTTCCTCTA+AGG | - | chr7_2:65581141-65581160 | Msa1069770:five_prime_UTR | 35.0% | |
| AGGAGACAATACACTGTTGT+TGG | + | chr7_2:65578021-65578040 | None:intergenic | 40.0% | |
| GTGATGAGAGATTCAGAACA+AGG | + | chr7_2:65578116-65578135 | None:intergenic | 40.0% | |
| !!! | CATCAGGTGATGATTGGTTT+TGG | + | chr7_2:65578220-65578239 | None:intergenic | 40.0% |
| ! | GGTTTTCATCAGGTGATGAT+TGG | + | chr7_2:65578226-65578245 | None:intergenic | 40.0% |
| !! | GATGCAAATGGGTTTTCATC+AGG | + | chr7_2:65578236-65578255 | None:intergenic | 40.0% |
| !! | ACAGATGATGATGATGATGG+TGG | + | chr7_2:65578269-65578288 | None:intergenic | 40.0% |
| ! | GGAACAGATGATGATGATGA+TGG | + | chr7_2:65578272-65578291 | None:intergenic | 40.0% |
| TCAGTTGTTGCATGATTCTG+TGG | + | chr7_2:65578296-65578315 | None:intergenic | 40.0% | |
| ATCATGCAACAACTGAGAAC+TGG | - | chr7_2:65578300-65578319 | Msa1069770:CDS | 40.0% | |
| TCATGCAACAACTGAGAACT+GGG | - | chr7_2:65578301-65578320 | Msa1069770:CDS | 40.0% | |
| AACTGGGGAACACATATGAT+GGG | - | chr7_2:65578317-65578336 | Msa1069770:CDS | 40.0% | |
| TTGTTGTCTGGATGACTACT+TGG | + | chr7_2:65578356-65578375 | None:intergenic | 40.0% | |
| TTACAAACTGCTTCTGCTGA+TGG | - | chr7_2:65578386-65578405 | Msa1069770:intron | 40.0% | |
| ATTGTGCCAGATGTTATTGG+CGG | + | chr7_2:65578555-65578574 | None:intergenic | 40.0% | |
| ACGATTGTGCCAGATGTTAT+TGG | + | chr7_2:65578558-65578577 | None:intergenic | 40.0% | |
| TAACCCTCCTTACTTCTAGA+AGG | - | chr7_2:65578640-65578659 | Msa1069770:intron | 40.0% | |
| ! | CAATCCTTCTAGAAGTAAGG+AGG | + | chr7_2:65578647-65578666 | None:intergenic | 40.0% |
| ! | AGTTCTGATAATATCCACGG+TGG | + | chr7_2:65579559-65579578 | None:intergenic | 40.0% |
| ATTGCAGCTGAAGACAATGA+AGG | + | chr7_2:65579747-65579766 | None:intergenic | 40.0% | |
| TTCATTGTCTTCAGCTGCAA+TGG | - | chr7_2:65579746-65579765 | Msa1069770:intron | 40.0% | |
| TCATTGTCTTCAGCTGCAAT+GGG | - | chr7_2:65579747-65579766 | Msa1069770:intron | 40.0% | |
| GACTGTAAAAGCGATATCAG+AGG | - | chr7_2:65579782-65579801 | Msa1069770:intron | 40.0% | |
| ATAAGTAGGTAGACACCTGA+GGG | - | chr7_2:65580111-65580130 | Msa1069770:intron | 40.0% | |
| TGTTCCATTATACTACCCTC+AGG | + | chr7_2:65580129-65580148 | None:intergenic | 40.0% | |
| ! | GGGTAGTATAATGGAACAAG+TGG | - | chr7_2:65580131-65580150 | Msa1069770:intron | 40.0% |
| ACGGGATTAATCACCGAATT+CGG | + | chr7_2:65580276-65580295 | None:intergenic | 40.0% | |
| TTGACACAAAAGAGGGACAA+GGG | + | chr7_2:65580579-65580598 | None:intergenic | 40.0% | |
| ATTGACACAAAAGAGGGACA+AGG | + | chr7_2:65580580-65580599 | None:intergenic | 40.0% | |
| ACTGTTCCAATCTTCGCTAA+AGG | + | chr7_2:65580770-65580789 | None:intergenic | 40.0% | |
| CAGTTAATCCTGTGATCATG+AGG | - | chr7_2:65580786-65580805 | Msa1069770:CDS | 40.0% | |
| ATCCAGATTGTGACAGTTGA+CGG | - | chr7_2:65580830-65580849 | Msa1069770:CDS | 40.0% | |
| !!! | GGGCATGATTTTTGGTTCAT+GGG | - | chr7_2:65580851-65580870 | Msa1069770:CDS | 40.0% |
| GAACTAGTTAGTCGTTGGTA+CGG | + | chr7_2:65580948-65580967 | None:intergenic | 40.0% | |
| ! | GACTAACTAGTTCTTCAAGC+TGG | - | chr7_2:65580955-65580974 | Msa1069770:CDS | 40.0% |
| ! | GGAATTTTCCCCATTTCTCT+TGG | - | chr7_2:65580976-65580995 | Msa1069770:exon | 40.0% |
| !! | GATGATGATGATGATGGTGG+TGG | + | chr7_2:65578266-65578285 | None:intergenic | 45.0% |
| GTTGTTGCATGATTCTGTGG+TGG | + | chr7_2:65578293-65578312 | None:intergenic | 45.0% | |
| CATGCAACAACTGAGAACTG+GGG | - | chr7_2:65578302-65578321 | Msa1069770:CDS | 45.0% | |
| GAACTGGGGAACACATATGA+TGG | - | chr7_2:65578316-65578335 | Msa1069770:CDS | 45.0% | |
| TAGTAATGAACCTGAGGCTG+AGG | + | chr7_2:65578422-65578441 | None:intergenic | 45.0% | |
| TGCTGGTAGTAATGAACCTG+AGG | + | chr7_2:65578428-65578447 | None:intergenic | 45.0% | |
| CTACTGCTAGGCTTATCAAC+AGG | + | chr7_2:65578476-65578495 | None:intergenic | 45.0% | |
| TAAGCCTAGCAGTAGTCCTA+TGG | - | chr7_2:65578481-65578500 | Msa1069770:intron | 45.0% | |
| GATTCCATAGGACTACTGCT+AGG | + | chr7_2:65578488-65578507 | None:intergenic | 45.0% | |
| AAGCTACCGCCAATAACATC+TGG | - | chr7_2:65578546-65578565 | Msa1069770:intron | 45.0% | |
| GTGGATCGAATCATGCTCTA+AGG | + | chr7_2:65579540-65579559 | None:intergenic | 45.0% | |
| CCTAACATACACATGAAGGG+CGG | - | chr7_2:65579660-65579679 | Msa1069770:intron | 45.0% | |
| CATTGTCTTCAGCTGCAATG+GGG | - | chr7_2:65579748-65579767 | Msa1069770:intron | 45.0% | |
| GTAAAAGCGATATCAGAGGG+TGG | - | chr7_2:65579786-65579805 | Msa1069770:intron | 45.0% | |
| AAGTAAAGGGTTCCTGCAAC+AGG | + | chr7_2:65579903-65579922 | None:intergenic | 45.0% | |
| AGGGTGCAGTGAAACTCAAA+GGG | + | chr7_2:65579959-65579978 | None:intergenic | 45.0% | |
| TGTAGTAGCTCCAAGTCACT+TGG | + | chr7_2:65579986-65580005 | None:intergenic | 45.0% | |
| ! | AGTGACTTGGAGCTACTACA+AGG | - | chr7_2:65579986-65580005 | Msa1069770:intron | 45.0% |
| GATAAGTAGGTAGACACCTG+AGG | - | chr7_2:65580110-65580129 | Msa1069770:intron | 45.0% | |
| GACACCTGAGGGTAGTATAA+TGG | - | chr7_2:65580122-65580141 | Msa1069770:intron | 45.0% | |
| GTCGCAAAGGTAGACACAAT+TGG | + | chr7_2:65580428-65580447 | None:intergenic | 45.0% | |
| TAGCTGCTCTATAGTCGCAA+AGG | + | chr7_2:65580441-65580460 | None:intergenic | 45.0% | |
| TGACACAAAAGAGGGACAAG+GGG | + | chr7_2:65580578-65580597 | None:intergenic | 45.0% | |
| ATGGTGCCTTTAGCGAAGAT+TGG | - | chr7_2:65580761-65580780 | Msa1069770:CDS | 45.0% | |
| TGATTCTCCCTCATGATCAC+AGG | + | chr7_2:65580797-65580816 | None:intergenic | 45.0% | |
| TCCAGATTGTGACAGTTGAC+GGG | - | chr7_2:65580831-65580850 | Msa1069770:CDS | 45.0% | |
| !! | CAGTTGACGGGCATGATTTT+TGG | - | chr7_2:65580843-65580862 | Msa1069770:CDS | 45.0% |
| !!! | CGGGCATGATTTTTGGTTCA+TGG | - | chr7_2:65580850-65580869 | Msa1069770:CDS | 45.0% |
| GCAGTAAAGAACCTATCGGA+AGG | - | chr7_2:65580893-65580912 | Msa1069770:CDS | 45.0% | |
| AATGTGAGATGCCTTCCGAT+AGG | + | chr7_2:65580907-65580926 | None:intergenic | 45.0% | |
| ! | ATCTCACATTTTGTTGCGCC+CGG | - | chr7_2:65580917-65580936 | Msa1069770:CDS | 45.0% |
| !!! | TATAATTTTTATTAAAATTG+TGG | + | chr7_2:65579599-65579618 | None:intergenic | 5.0% |
| ! | GCAAAGAAGCATAGTCGGTG+TGG | - | chr7_2:65577974-65577993 | Msa1069770:three_prime_UTR | 50.0% |
| !! | GTGGTGCTGGTGATGCAAAT+GGG | + | chr7_2:65578247-65578266 | None:intergenic | 50.0% |
| GGATGACTACTTGGTACAGC+TGG | + | chr7_2:65578347-65578366 | None:intergenic | 50.0% | |
| ! | ACTGCTTCTGCTGATGGACA+AGG | - | chr7_2:65578392-65578411 | Msa1069770:intron | 50.0% |
| GCACGTATGGATGATCTTGC+TGG | + | chr7_2:65578445-65578464 | None:intergenic | 50.0% | |
| ACAGGACTGTGTTGCACGTA+TGG | + | chr7_2:65578458-65578477 | None:intergenic | 50.0% | |
| CCGCCCTTCATGTGTATGTT+AGG | + | chr7_2:65579663-65579682 | None:intergenic | 50.0% | |
| ! | CAGGCCCTGTTGTTGTTGAA+AGG | + | chr7_2:65579884-65579903 | None:intergenic | 50.0% |
| ! | GAGGGTGCAGTGAAACTCAA+AGG | + | chr7_2:65579960-65579979 | None:intergenic | 50.0% |
| TTGAGTTTCACTGCACCCTC+CGG | - | chr7_2:65579960-65579979 | Msa1069770:intron | 50.0% | |
| !! | GGTGGTGCTGGTGATGCAAA+TGG | + | chr7_2:65578248-65578267 | None:intergenic | 55.0% |
| !! | GATGATGATGGTGGTGGTGC+TGG | + | chr7_2:65578260-65578279 | None:intergenic | 55.0% |
| ACAAGGACAACCTCAGCCTC+AGG | - | chr7_2:65578409-65578428 | Msa1069770:intron | 55.0% | |
| GAGCATGATTCGATCCACCG+TGG | - | chr7_2:65579542-65579561 | Msa1069770:intron | 55.0% | |
| ACAACAACAGGGCCTGTTGC+AGG | - | chr7_2:65579888-65579907 | Msa1069770:intron | 55.0% | |
| GTAGCTCCAAGTCACTTGGC+CGG | + | chr7_2:65579982-65580001 | None:intergenic | 55.0% | |
| CTAGCATAGCGTAGCGAAGC+TGG | + | chr7_2:65580548-65580567 | None:intergenic | 55.0% | |
| CACAAAAGAGGGACAAGGGG+TGG | + | chr7_2:65580575-65580594 | None:intergenic | 55.0% | |
| GCCCGTCAACTGTCACAATC+TGG | + | chr7_2:65580835-65580854 | None:intergenic | 55.0% | |
| CTCCAAGTCACTTGGCCGGA+GGG | + | chr7_2:65579978-65579997 | None:intergenic | 60.0% | |
| AGTCGTTGGTACGGCTACGC+CGG | + | chr7_2:65580939-65580958 | None:intergenic | 60.0% | |
| CACCCTCCGGCCAAGTGACT+TGG | - | chr7_2:65579973-65579992 | Msa1069770:intron | 65.0% | |
| GCTCCAAGTCACTTGGCCGG+AGG | + | chr7_2:65579979-65579998 | None:intergenic | 65.0% | |
| GTCGTTGGTACGGCTACGCC+GGG | + | chr7_2:65580938-65580957 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 65577965 | 65581196 | 65577965 | ID=Msa1069770;Name=Msa1069770 |
| chr7_2 | mRNA | 65577965 | 65581196 | 65577965 | ID=Msa1069770-mRNA-1;Parent=Msa1069770;Name=Msa1069770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211|1|1|1|1|1|3|232|293 |
| chr7_2 | exon | 65577965 | 65578403 | 65577965 | ID=Msa1069770-mRNA-1:exon:13828;Parent=Msa1069770-mRNA-1 |
| chr7_2 | exon | 65579154 | 65579428 | 65579154 | ID=Msa1069770-mRNA-1:exon:13827;Parent=Msa1069770-mRNA-1 |
| chr7_2 | exon | 65580586 | 65581196 | 65580586 | ID=Msa1069770-mRNA-1:exon:13826;Parent=Msa1069770-mRNA-1 |
| chr7_2 | five_prime_UTR | 65580986 | 65581196 | 65580986 | ID=Msa1069770-mRNA-1:five_prime_utr;Parent=Msa1069770-mRNA-1 |
| chr7_2 | CDS | 65580586 | 65580985 | 65580586 | ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1 |
| chr7_2 | CDS | 65579154 | 65579428 | 65579154 | ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1 |
| chr7_2 | CDS | 65578197 | 65578403 | 65578197 | ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1 |
| chr7_2 | three_prime_UTR | 65577965 | 65578196 | 65577965 | ID=Msa1069770-mRNA-1:three_prime_utr;Parent=Msa1069770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
