AlfalfaGEDB | Msa1069770

M. sativa cultivar zhongmu-4 / Msa1069770

KEGG: -
GO: -
PFAM: PF02893.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069770	XP_003624460.1	94.604	278	11	2	18	293	13	288	3.25e-180	508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069770	sp\|Q9LYV6\|GEML5_ARATH	60.714	252	83	3	32	282	27	263	1.44e-107	316

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069770	G7KW78	94.604	278	11	2	18	293	13	288	1.55e-180	508

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037280	Msa1069770	0.806642	7.448912e-50	-8.615850e-47
Msa0076640	Msa1069770	0.800244	1.578734e-48	-8.615850e-47
Msa0100840	Msa1069770	-0.806518	7.914074e-50	-8.615850e-47
Msa0169050	Msa1069770	0.800454	1.430148e-48	-8.615850e-47
Msa0253120	Msa1069770	0.804688	1.915304e-49	-8.615850e-47
Msa0276610	Msa1069770	-0.806452	8.171314e-50	-8.615850e-47
Msa0481770	Msa1069770	0.823648	1.236741e-53	-8.615850e-47
Msa0749500	Msa1069770	0.800522	1.385401e-48	-8.615850e-47
Msa0749510	Msa1069770	0.802301	5.986249e-49	-8.615850e-47
Msa0831430	Msa1069770	0.808559	2.918950e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069770	MtrunA17_Chr7g0251801	94.604	278	11	2	18	293	13	288	0.0	508
Msa1069770	MtrunA17_Chr3g0133221	47.475	198	94	3	91	279	59	255	4.88e-61	194
Msa1069770	MtrunA17_Chr8g0367701	48.125	160	82	1	120	279	109	267	1.12e-52	173
Msa1069770	MtrunA17_Chr2g0315771	41.176	204	107	3	92	282	25	228	3.22e-48	160
Msa1069770	MtrunA17_Chr6g0481891	39.394	198	111	2	84	280	8	197	2.76e-45	152
Msa1069770	MtrunA17_Chr1g0162171	38.857	175	107	0	107	281	48	222	3.96e-45	152
Msa1069770	MtrunA17_Chr1g0212091	38.547	179	110	0	101	279	40	218	1.78e-44	150
Msa1069770	MtrunA17_Chr8g0388871	41.975	162	93	1	120	280	22	183	3.84e-41	140
Msa1069770	MtrunA17_Chr1g0212171	35.758	165	106	0	117	281	56	220	4.14e-37	131
Msa1069770	MtrunA17_Chr1g0212181	36.810	163	103	0	119	281	55	217	4.40e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069770	AT5G13200.1	60.714	252	83	3	32	282	27	263	1.46e-108	316
Msa1069770	AT5G13200.2	60.204	196	62	3	32	226	27	207	3.12e-78	237
Msa1069770	AT2G22475.1	44.670	197	98	3	93	279	96	291	8.75e-59	190
Msa1069770	AT1G28200.1	46.429	196	94	3	91	279	63	254	1.38e-58	188
Msa1069770	AT1G28200.2	46.429	196	94	3	91	279	63	254	1.38e-58	188
Msa1069770	AT5G23370.1	41.875	160	93	0	121	280	55	214	4.27e-43	147
Msa1069770	AT5G08350.1	39.326	178	103	1	103	280	41	213	5.82e-43	147
Msa1069770	AT5G23360.1	41.615	161	94	0	121	281	47	207	1.28e-42	145
Msa1069770	AT5G23350.1	42.138	159	92	0	121	279	55	213	3.46e-42	145
Msa1069770	AT2G22475.2	43.537	147	72	3	93	229	96	241	8.11e-38	134

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Find 84 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATTCCAAGAGAAAT+GGG	0.404925	7_2:+65578154	None:intergenic
AAATTGCAATAACACCTTAG+AGG	0.462985	7_2:+65577984	None:intergenic
AACACATTCCAAGAGAAATG+GGG	0.695630	7_2:+65578155	None:intergenic
AACTGGGGAACACATATGAT+GGG	0.620571	7_2:-65580822	Msa1069770:CDS
AAGCTACCGCCAATAACATC+TGG	0.518887	7_2:-65580593	Msa1069770:CDS
AAGTAAAGGGTTCCTGCAAC+AGG	0.429659	7_2:+65579239	None:intergenic
AATGTGAGATGCCTTCCGAT+AGG	0.639873	7_2:+65578235	None:intergenic
AATTATGTAGGAAACAGAAA+TGG	0.528984	7_2:+65581056	None:intergenic
ACAACAACAGGGCCTGTTGC+AGG	0.417937	7_2:-65579251	Msa1069770:CDS
ACAAGGACAACCTCAGCCTC+AGG	0.564940	7_2:-65580730	Msa1069770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGGTTGAATGAATTATGT+AGG	+	chr7_2:65578098-65578117	None:intergenic	30.0%
TGTTCATGTTTGTATGTAAG+AGG	+	chr7_2:65578163-65578182	None:intergenic	30.0%
TTATGAGATGCTAGACTATT+AGG	+	chr7_2:65578921-65578940	None:intergenic	30.0%
TAGTCTAGCATCTCATAATT+TGG	-	chr7_2:65578923-65578942	Msa1069770:intron	30.0%
AGATATATAGTAAGGAGCTT+AGG	+	chr7_2:65579498-65579517	None:intergenic	30.0%
AAAATGAACACATGAGAGAA+CGG	+	chr7_2:65580295-65580314	None:intergenic	30.0%
ACGTCATATATGTAGTACTA+CGG	-	chr7_2:65580505-65580524	Msa1069770:intron	30.0%
TCACATATTGACACAAAAGA+GGG	+	chr7_2:65580586-65580605	None:intergenic	30.0%
TAAAGCAGTAAAGAACCTAT+CGG	-	chr7_2:65580889-65580908	Msa1069770:CDS	30.0%
AAACACATTCCAAGAGAAAT+GGG	+	chr7_2:65580988-65581007	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	65577965	65581196	65577965	ID=Msa1069770;Name=Msa1069770
chr7_2	mRNA	65577965	65581196	65577965	ID=Msa1069770-mRNA-1;Parent=Msa1069770;Name=Msa1069770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211\|1\|1\|1\|1\|1\|3\|232\|293
chr7_2	exon	65577965	65578403	65577965	ID=Msa1069770-mRNA-1:exon:13828;Parent=Msa1069770-mRNA-1
chr7_2	exon	65579154	65579428	65579154	ID=Msa1069770-mRNA-1:exon:13827;Parent=Msa1069770-mRNA-1
chr7_2	exon	65580586	65581196	65580586	ID=Msa1069770-mRNA-1:exon:13826;Parent=Msa1069770-mRNA-1
chr7_2	five_prime_UTR	65580986	65581196	65580986	ID=Msa1069770-mRNA-1:five_prime_utr;Parent=Msa1069770-mRNA-1
chr7_2	CDS	65580586	65580985	65580586	ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1
chr7_2	CDS	65579154	65579428	65579154	ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1
chr7_2	CDS	65578197	65578403	65578197	ID=Msa1069770-mRNA-1:cds;Parent=Msa1069770-mRNA-1
chr7_2	three_prime_UTR	65577965	65578196	65577965	ID=Msa1069770-mRNA-1:three_prime_utr;Parent=Msa1069770-mRNA-1

Gene Sequence

>Msa1069770

ATGAACAACAACAACGACAACAACAACAACAACAACAAAAACCAAAACCAATCATCACCTGATGAAAACCCATTTGCATCACCAGCACCACCACCATCATCATCATCATCTGTTCCACCACAGAATCATGCAACAACTGAGAACTGGGGAACACATATGATGGGAGCACCAGCTGTACCAAGTAGTCATCCAGACAACAAAAAAGCAGCTTTACAAACTGCTTCTGCTGATGGACAAGGACAACCTCAGCCTCAGGTTCATTACTACCAGCAAGATCATCCATACGTGCAACACAGTCCTGTTGATAAGCCTAGCAGTAGTCCTATGGAATCAATTCTTCATATGTTTGATTCTTGGAGTAAAAAAGCTGAAGCTACCGCCAATAACATCTGGCACAATCTTAAAACAGGGCCTTCATTGTCTTCAGCTGCAATGGGGAAGATGAATCTGACTGTAAAAGCGATATCAGAGGGTGGATTTGAGTCACTTTACAAACAAATATTCACTACTTATCCAAATGAGAAGCTGAAAAAGACATTTGCTTGTTACCTTTCAACAACAACAGGGCCTGTTGCAGGAACCCTTTACTTATCAGATATTCATCTAGCATTTTGCAGTGATCGCCCTTTGAGTTTCACTGCACCCTCCGGCCAAGTGACTTGGAGCTACTACAAGGTGATGGTGCCTTTAGCGAAGATTGGAACAGTTAATCCTGTGATCATGAGGGAGAATCAATCAGAGAAGTATATCCAGATTGTGACAGTTGACGGGCATGATTTTTGGTTCATGGGTTTTGTTAATTATGATAAAGCAGTAAAGAACCTATCGGAAGGCATCTCACATTTTGTTGCGCCCGGCGTAGCCGTACCAACGACTAACTAG

Protein sequence

>Msa1069770

MNNNNDNNNNNNKNQNQSSPDENPFASPAPPPSSSSSVPPQNHATTENWGTHMMGAPAVPSSHPDNKKAALQTASADGQGQPQPQVHYYQQDHPYVQHSPVDKPSSSPMESILHMFDSWSKKAEATANNIWHNLKTGPSLSSAAMGKMNLTVKAISEGGFESLYKQIFTTYPNEKLKKTFACYLSTTTGPVAGTLYLSDIHLAFCSDRPLSFTAPSGQVTWSYYKVMVPLAKIGTVNPVIMRENQSEKYIQIVTVDGHDFWFMGFVNYDKAVKNLSEGISHFVAPGVAVPTTN*