AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123550 MtrunA17_Chr2g0279481 98.832 685 7 1 1 684 1 685 0.0 1410
Msa1123550 MtrunA17_Chr4g0050021 81.050 686 111 9 1 684 1 669 0.0 1111
Msa1123550 MtrunA17_Chr8g0382231 41.888 678 300 12 3 663 13 613 3.01e-180 527
Msa1123550 MtrunA17_Chr2g0303541 38.831 667 356 12 23 677 5 631 2.20e-151 453
Msa1123550 MtrunA17_Chr2g0285511 38.202 623 325 11 19 635 1 569 6.40e-137 415
Msa1123550 MtrunA17_Chr2g0320691 37.138 622 334 12 27 635 6 583 9.59e-132 402
Msa1123550 MtrunA17_Chr5g0401341 41.231 536 248 11 23 548 5 483 4.61e-129 395
Msa1123550 MtrunA17_Chr5g0401451 36.780 590 298 7 32 612 28 551 8.03e-126 387
Msa1123550 MtrunA17_Chr8g0374011 35.945 651 331 12 34 639 10 619 1.75e-125 387
Msa1123550 MtrunA17_Chr4g0010091 36.084 618 332 9 33 645 24 583 5.68e-125 384
Msa1123550 MtrunA17_Chr1g0207461 38.716 545 276 11 23 558 5 500 1.92e-121 375
Msa1123550 MtrunA17_Chr1g0150191 38.806 536 267 10 19 547 6 487 3.66e-121 374
Msa1123550 MtrunA17_Chr1g0181181 37.430 537 277 8 23 555 5 486 2.89e-119 367
Msa1123550 MtrunA17_Chr8g0367891 40.217 552 240 10 23 552 5 488 5.23e-119 368
Msa1123550 MtrunA17_Chr1g0191711 34.171 597 286 13 33 622 47 543 1.31e-116 360
Msa1123550 MtrunA17_Chr4g0053841 36.227 599 300 8 32 620 1 527 1.90e-115 358
Msa1123550 MtrunA17_Chr4g0076521 37.665 531 274 8 23 552 5 479 4.24e-111 348
Msa1123550 MtrunA17_Chr1g0195911 32.609 644 355 12 20 647 13 593 1.09e-109 345
Msa1123550 MtrunA17_Chr5g0412591 38.156 553 255 11 23 552 5 493 1.14e-109 344
Msa1123550 MtrunA17_Chr1g0199631 36.007 586 315 11 62 641 8 539 1.98e-109 342
Msa1123550 MtrunA17_Chr7g0245201 35.605 587 308 15 36 614 53 577 2.29e-109 344
Msa1123550 MtrunA17_Chr7g0268781 31.674 663 381 13 20 666 13 619 2.55e-108 341
Msa1123550 MtrunA17_Chr5g0432861 34.165 521 284 7 32 552 13 474 7.08e-102 323
Msa1123550 MtrunA17_Chr3g0108331 32.848 618 324 9 32 646 12 541 9.47e-102 322
Msa1123550 MtrunA17_Chr2g0290741 35.370 540 278 8 23 559 5 476 1.04e-100 320
Msa1123550 MtrunA17_Chr4g0003891 37.250 400 194 7 233 629 46 391 2.02e-80 263
Msa1123550 MtrunA17_Chr2g0332281 35.232 474 239 7 219 684 10 423 8.58e-79 257
Msa1123550 MtrunA17_Chr4g0037661 28.286 601 334 17 47 626 6 530 8.33e-55 196
Msa1123550 MtrunA17_Chr1g0163311 27.916 523 268 14 54 546 14 457 4.87e-52 188
Msa1123550 MtrunA17_Chr4g0023801 27.243 602 356 17 53 644 14 543 2.28e-50 184
Msa1123550 MtrunA17_Chr1g0206621 45.255 137 73 1 51 185 75 211 1.16e-31 123
Msa1123550 MtrunA17_Chr2g0280541 26.258 457 259 11 110 560 1 385 1.09e-30 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123550 AT5G64330.1 68.000 725 155 15 1 654 2 720 0.0 942
Msa1123550 AT5G64330.2 68.098 652 134 14 1 584 2 647 0.0 843
Msa1123550 AT5G64330.3 68.259 586 125 11 57 584 6 588 0.0 757
Msa1123550 AT5G10250.2 39.124 639 278 12 30 643 36 588 1.58e-152 456
Msa1123550 AT5G10250.1 39.110 629 277 12 30 643 36 573 2.87e-149 447
Msa1123550 AT1G30440.1 38.148 637 348 10 23 643 5 611 2.04e-145 439
Msa1123550 AT5G03250.1 37.739 628 321 14 25 642 7 574 1.63e-131 400
Msa1123550 AT5G13600.1 37.500 616 319 12 19 629 1 555 1.13e-126 388
Msa1123550 AT5G67440.3 40.797 527 239 9 39 556 22 484 2.67e-124 382
Msa1123550 AT5G67440.1 40.797 527 239 9 39 556 22 484 2.67e-124 382
Msa1123550 AT3G44820.1 35.738 610 348 9 27 624 6 583 2.09e-121 376
Msa1123550 AT5G67385.1 39.205 528 262 7 32 557 13 483 4.21e-121 374
Msa1123550 AT1G67900.5 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT1G67900.1 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT1G67900.3 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT1G67900.6 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT1G67900.2 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT1G67900.4 38.821 577 285 8 23 578 5 534 1.20e-119 371
Msa1123550 AT4G31820.1 37.782 532 257 12 23 548 5 468 3.79e-116 360
Msa1123550 AT2G14820.2 38.095 546 278 11 23 558 5 500 9.12e-116 361
Msa1123550 AT2G14820.1 38.095 546 278 11 23 558 5 500 9.12e-116 361
Msa1123550 AT5G48800.1 34.797 615 324 7 37 642 34 580 1.83e-114 357
Msa1123550 AT5G67440.2 40.237 507 230 9 59 556 5 447 2.48e-114 354
Msa1123550 AT4G37590.1 36.348 597 280 13 23 605 5 515 1.70e-111 348
Msa1123550 AT1G03010.1 32.428 663 339 14 21 647 14 603 4.59e-111 349
Msa1123550 AT3G08570.1 34.903 616 323 13 40 646 30 576 1.33e-110 347
Msa1123550 AT5G66560.1 33.333 687 343 15 28 646 3 642 5.22e-110 347
Msa1123550 AT1G03010.2 33.022 642 322 13 42 647 7 576 5.66e-110 345
Msa1123550 AT1G03010.3 33.022 642 322 13 42 647 33 602 1.57e-109 345
Msa1123550 AT2G30520.1 35.163 583 303 8 32 614 18 525 2.49e-109 343
Msa1123550 AT5G67385.4 38.788 495 244 7 65 557 1 438 5.50e-108 338
Msa1123550 AT5G67385.5 38.788 495 244 7 65 557 1 438 5.50e-108 338
Msa1123550 AT5G67385.2 38.788 495 244 7 65 557 1 438 5.50e-108 338
Msa1123550 AT5G67385.3 38.788 495 244 7 65 557 1 438 5.50e-108 338
Msa1123550 AT5G47800.3 36.571 525 277 7 23 546 5 474 2.76e-105 332
Msa1123550 AT5G47800.1 36.571 525 277 7 23 546 5 474 2.76e-105 332
Msa1123550 AT5G47800.4 36.571 525 277 7 23 546 5 474 2.76e-105 332
Msa1123550 AT5G47800.2 36.571 525 277 7 23 546 118 587 1.25e-103 331
Msa1123550 AT5G66560.3 33.687 659 322 15 56 646 2 613 9.06e-103 327
Msa1123550 AT2G47860.1 32.558 645 324 16 17 624 2 572 1.13e-102 327
Msa1123550 AT3G08660.1 33.929 616 302 16 40 646 30 549 1.05e-101 323
Msa1123550 AT4G31820.2 37.474 483 229 11 71 548 1 415 1.86e-101 320
Msa1123550 AT3G26490.1 35.676 555 280 12 25 552 7 511 2.79e-101 322
Msa1123550 AT3G26490.3 35.676 555 280 12 25 552 7 511 2.79e-101 322
Msa1123550 AT3G26490.4 35.676 555 280 12 25 552 7 511 2.79e-101 322
Msa1123550 AT2G23050.1 36.891 534 241 11 23 548 5 450 4.61e-101 318
Msa1123550 AT5G66560.4 35.214 585 308 13 86 646 66 603 3.78e-99 318
Msa1123550 AT2G47860.3 31.437 668 324 17 17 624 2 595 1.79e-97 314
Msa1123550 AT2G30520.2 34.122 592 308 10 64 649 2 517 1.15e-95 306
Msa1123550 AT2G30520.3 34.122 592 308 10 64 649 2 517 1.15e-95 306
Msa1123550 AT3G50840.1 33.169 609 324 12 38 639 10 542 6.32e-94 302
Msa1123550 AT3G08660.3 34.862 545 257 13 86 621 15 470 2.03e-91 294
Msa1123550 AT5G03250.2 35.057 522 271 13 129 642 1 462 7.58e-89 286
Msa1123550 AT3G49970.1 33.214 560 260 10 56 614 6 452 4.70e-88 285
Msa1123550 AT3G49970.2 33.214 560 260 10 56 614 6 452 4.70e-88 285
Msa1123550 AT3G50840.2 33.220 590 295 15 65 639 1 506 1.09e-82 271
Msa1123550 AT3G50840.3 33.220 590 295 15 65 639 1 506 1.09e-82 271
Msa1123550 AT5G66560.2 34.170 518 240 12 34 497 9 479 2.23e-79 261
Msa1123550 AT3G15570.1 33.546 471 247 9 233 684 29 452 2.22e-78 258
Msa1123550 AT2G47860.4 33.140 516 236 14 17 497 2 443 1.40e-76 253
Msa1123550 AT3G26490.2 33.333 501 257 12 25 498 7 457 4.66e-76 253
Msa1123550 AT1G52770.1 33.532 504 258 13 206 684 3 454 2.08e-75 250
Msa1123550 AT3G08660.2 34.115 469 219 11 40 499 30 417 7.95e-75 247
Msa1123550 AT2G47860.6 31.540 539 237 15 17 497 2 466 2.19e-71 239
Msa1123550 AT2G23050.2 34.679 421 187 8 129 548 1 334 2.00e-68 228
Msa1123550 AT2G47860.5 30.153 524 268 12 129 624 1 454 1.38e-65 225
Msa1123550 AT2G47860.2 30.153 524 268 12 129 624 1 454 1.38e-65 225
Msa1123550 AT1G50280.1 28.770 504 289 10 53 542 13 460 1.84e-49 181
Msa1123550 AT1G50280.2 29.399 466 264 9 86 542 18 427 1.16e-48 178
Msa1123550 AT5G17580.2 26.863 510 294 9 46 549 22 458 3.07e-41 159
Msa1123550 AT5G17580.1 26.863 510 294 9 46 549 7 443 7.26e-41 157
Msa1123550 AT3G03510.1 26.344 558 276 16 98 648 8 437 1.40e-39 152
Msa1123550 AT3G22104.1 26.869 495 275 13 46 533 6 420 1.77e-39 152
Msa1123550 AT3G19850.1 35.115 262 152 3 341 602 273 516 3.18e-38 150
Msa1123550 AT3G19850.1 32.143 168 98 2 86 240 52 216 7.98e-17 84.7
Msa1123550 AT5G48130.1 33.333 240 143 5 37 272 32 258 5.52e-36 144
Msa1123550 AT5G48130.1 34.921 126 79 1 432 557 356 478 1.41e-18 90.5
Msa1123550 AT3G22104.4 25.532 423 231 10 115 533 3 345 4.05e-27 115
Msa1123550 AT3G22104.2 25.532 423 231 10 115 533 3 345 4.05e-27 115
Msa1123550 AT3G22104.3 25.532 423 231 10 115 533 3 345 4.05e-27 115
Msa1123550 AT3G49900.1 36.306 157 88 5 34 184 55 205 9.07e-16 81.3
Msa1123550 AT3G49900.2 36.306 157 88 5 34 184 55 205 9.16e-16 81.3

Find 132 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTCTTGCTTTAGCATTA+AGG 0.194475 7_3:-74467730 None:intergenic
TTAACAGCAGGAAACATTTC+TGG 0.198628 7_3:+74466741 Msa1123550:CDS
ATATCATTATTATTCCATTT+TGG 0.217112 7_3:-74467035 None:intergenic
GAGAATGGCAATTATGTTAA+AGG 0.217758 7_3:+74467481 Msa1123550:CDS
TAGAGTCATTACTGCTATTA+AGG 0.220033 7_3:+74467145 Msa1123550:CDS
TCTTTCATTGACAAAGTTTC+AGG 0.239657 7_3:+74467799 Msa1123550:CDS
AAAATGAAAGGCTTCCATTA+AGG 0.246972 7_3:+74468567 Msa1123550:CDS
ATGCATCAATTGAGAGTTTC+TGG 0.254350 7_3:-74468529 None:intergenic
AGCAATTCCATAGCAGAATT+TGG 0.262431 7_3:-74466712 None:intergenic
TCTTTACCTGTTCTGCAAAT+AGG 0.263165 7_3:-74468604 None:intergenic
TAGCAGTTGTCCATCCTTCT+TGG 0.266447 7_3:-74468730 None:intergenic
AAAATTGTTGGAGGTGTTAC+AGG 0.266569 7_3:-74465784 None:intergenic
GCTAATGAGTATATTAGATT+TGG 0.271994 7_3:-74465159 None:intergenic
TTAATTCCTTGTTATAATAA+AGG 0.275835 7_3:+74467578 Msa1123550:CDS
ATTACTGCTATTAAGGTAAA+AGG 0.277571 7_3:+74467152 Msa1123550:CDS
ACTTGCACAACTACCCTTAA+TGG 0.282327 7_3:-74468581 None:intergenic
GGAATGAGATTTGAGTTAAT+TGG 0.282402 7_3:+74467173 Msa1123550:CDS
ACAAAATGTACTGTTCTAAA+AGG 0.286994 7_3:-74465941 None:intergenic
CTAATCCAAAAGGGATAAAA+TGG 0.293832 7_3:+74466976 Msa1123550:CDS
TTTGGAGCTTCAAAATGATA+TGG 0.295839 7_3:+74468805 Msa1123550:CDS
TAATGCATTATGCAACTAAA+TGG 0.300901 7_3:+74467204 Msa1123550:CDS
TTTCATGCACTTTCCTTCTT+AGG 0.307187 7_3:+74467453 Msa1123550:CDS
CTGTTCTGTTCTGGAGCTGC+TGG 0.323542 7_3:-74468977 None:intergenic
AGAAAAGTATCAAAATATTT+AGG 0.333420 7_3:+74469239 Msa1123550:three_prime_UTR
GGTAGCGGTAGTTGGATTAA+AGG 0.337161 7_3:+74467305 Msa1123550:CDS
GAGTGTGAAAGCTAAGTATT+TGG 0.342226 7_3:+74468787 Msa1123550:CDS
AAAATATTTAGGCTAAAATA+TGG 0.345265 7_3:+74469250 Msa1123550:three_prime_UTR
GTAGTAGTGGTAGCGGTAGT+TGG 0.346625 7_3:+74467297 Msa1123550:CDS
AGCTATTGATTCCTATCTTA+AGG 0.367444 7_3:+74467877 Msa1123550:CDS
CCTTCTTAGGCTTCTGAGAA+TGG 0.374018 7_3:+74467466 Msa1123550:CDS
AAATGAAAGGCTTCCATTAA+GGG 0.389974 7_3:+74468568 Msa1123550:CDS
TCACAGGTTCTAGCTGATTC+AGG 0.390652 7_3:-74467839 None:intergenic
TTCTGAGAAACATATGGGAT+TGG 0.397986 7_3:+74467700 Msa1123550:CDS
GCAAGTCCTATTTGCAGAAC+AGG 0.399215 7_3:+74468598 Msa1123550:CDS
TTGAAGATGTTTCAATCCTT+AGG 0.401499 7_3:+74467108 Msa1123550:CDS
TCTGAGAAACATATGGGATT+GGG 0.407788 7_3:+74467701 Msa1123550:CDS
TGAGTATATTAGATTTGGAT+TGG 0.411878 7_3:-74465154 None:intergenic
CATATATGAATCACGCGAAC+CGG 0.412776 7_3:+74466629 Msa1123550:CDS
GGAAGTAATTACCTTAAGAT+AGG 0.421004 7_3:-74467888 None:intergenic
GATTCAACATCTTTCAAAGA+AGG 0.425349 7_3:-74468647 None:intergenic
TGTTACAGGCTGTGATGAAA+TGG 0.431885 7_3:-74465770 None:intergenic
CTTTCATGCTCAGAAAGTGT+TGG 0.432520 7_3:-74468479 None:intergenic
TAAATAAGTTGAGTGAGAAT+AGG 0.435374 7_3:-74465885 None:intergenic
TTTCCACTTCGAGATATAAG+AGG 0.442402 7_3:-74466594 None:intergenic
TTCTTCAAAGAGGTCACTCT+TGG 0.443338 7_3:+74466080 Msa1123550:CDS
AACATCTTTCAAAGAAGGGT+TGG 0.446054 7_3:-74468642 None:intergenic
GGTTACTGAATTAGAGAAAA+GGG 0.454667 7_3:+74467517 Msa1123550:CDS
ATTGCTGTTGATTTAACAGC+AGG 0.455116 7_3:+74466729 Msa1123550:CDS
ATAACTATCTTATTCACATC+CGG 0.457064 7_3:-74466648 None:intergenic
AGGCATAAAGACACTGAAAC+TGG 0.458972 7_3:+74465090 Msa1123550:five_prime_UTR
AAAGCTTGTGCTAATCCAAA+AGG 0.459789 7_3:+74466966 Msa1123550:CDS
ATCAACTAGTTCCTCCTGAT+TGG 0.465695 7_3:+74467081 Msa1123550:CDS
TGATGATGTTCTTCCAGTGT+AGG 0.466937 7_3:-74467000 None:intergenic
GAAGCGACTCTGCCGCGTAA+TGG 0.466966 7_3:+74468502 Msa1123550:CDS
TCAACTGCAAGACACAAGTA+TGG 0.473817 7_3:+74466010 Msa1123550:CDS
ATTCAACATCTTTCAAAGAA+GGG 0.475157 7_3:-74468646 None:intergenic
AACTAGTTCCTCCTGATTGG+TGG 0.478674 7_3:+74467084 Msa1123550:CDS
TATGTATAACTGTATATGTA+AGG 0.481267 7_3:-74465119 None:intergenic
AGCTAACTTCCACTTGCATA+AGG 0.482491 7_3:+74466277 Msa1123550:CDS
ACATCTTCAAACCACCAATC+AGG 0.482701 7_3:-74467095 None:intergenic
GAAGAAACACATGGAATGGT+TGG 0.485434 7_3:-74465863 None:intergenic
TTACAGAGGTTTCAAGAGAC+AGG 0.493241 7_3:+74467774 Msa1123550:CDS
ATGACAGAAGATTTAGAAGA+AGG 0.494776 7_3:+74466792 Msa1123550:CDS
TGGTTACTGAATTAGAGAAA+AGG 0.496556 7_3:+74467516 Msa1123550:CDS
TGTAACCATTGGTTGAGTAA+AGG 0.498751 7_3:-74468669 None:intergenic
TCAGCTAGAACCTGTGATGA+TGG 0.501666 7_3:+74467845 Msa1123550:CDS
GGAACTAGTTGATTCCTACT+TGG 0.503593 7_3:-74467071 None:intergenic
CATACTTCAGCTTGGAGTAG+TGG 0.506325 7_3:+74468869 Msa1123550:CDS
TCTAATTCAGTAACCAATGC+AGG 0.508323 7_3:-74467509 None:intergenic
GGATGTGAATAAGATAGTTA+TGG 0.510860 7_3:+74466650 Msa1123550:CDS
GTTAAAGGTTGCACCTGCAT+TGG 0.512074 7_3:+74467496 Msa1123550:CDS
AACTAAATGGCTACAAGGGT+TGG 0.513326 7_3:+74467217 Msa1123550:CDS
AATAGTAATAGTAGTAGTAG+TGG 0.515974 7_3:+74467284 Msa1123550:CDS
AGCAGAAGCATACTTCAGCT+TGG 0.516992 7_3:+74468861 Msa1123550:CDS
AATAGTAGTAGTAGTGGTAG+CGG 0.517826 7_3:+74467290 Msa1123550:CDS
AGTTGGATTAAAGGCGGCGG+TGG 0.518651 7_3:+74467314 Msa1123550:CDS
GTCTCTCCTTTATTATAACA+AGG 0.523236 7_3:-74467584 None:intergenic
CTTCAGCTTGGAGTAGTGGT+TGG 0.523301 7_3:+74468873 Msa1123550:CDS
TTCGATGAAGCGAGCAATTG+TGG 0.530246 7_3:+74467260 Msa1123550:CDS
TGATATCCCTGGTGGATTTG+AGG 0.532058 7_3:+74466674 Msa1123550:CDS
TAACAAAGTGATCAATCCTA+AGG 0.539725 7_3:-74467124 None:intergenic
CTTGCAGCCAAATTCTGCTA+TGG 0.542630 7_3:+74466705 Msa1123550:CDS
CAACACTTTCTGAGCATGAA+AGG 0.546369 7_3:+74468480 Msa1123550:CDS
CCATTCTCAGAAGCCTAAGA+AGG 0.546533 7_3:-74467466 None:intergenic
TATGCAACTAAATGGCTACA+AGG 0.547334 7_3:+74467212 Msa1123550:CDS
GGACTTCACATGATTGTAGC+AGG 0.547821 7_3:+74467335 Msa1123550:CDS
ACTGAATTAGAGAAAAGGGT+TGG 0.548384 7_3:+74467521 Msa1123550:CDS
TCAGATTCCCACATGTTGGA+TGG 0.549036 7_3:-74465980 None:intergenic
TCTATAAAGTCCATCATCAC+AGG 0.549509 7_3:-74467855 None:intergenic
CAACACACTAAAGTTTGAGC+TGG 0.551730 7_3:+74468763 Msa1123550:CDS
GGGATAAAATGGTCCTACAC+TGG 0.553562 7_3:+74466987 Msa1123550:CDS
CATCCTTCTTGGAATGATTG+TGG 0.555236 7_3:-74468719 None:intergenic
AGATAGCTACCTTATGCAAG+TGG 0.556587 7_3:-74466286 None:intergenic
ATTTGAAGATTCTCTGACCA+AGG 0.556867 7_3:-74466912 None:intergenic
ACTGAAGGATTTCTTCAAAG+AGG 0.557934 7_3:+74466070 Msa1123550:CDS
CCTTAATGCTAAAGCAAGAG+TGG 0.561105 7_3:+74467730 Msa1123550:CDS
CACAATCATTCCAAGAAGGA+TGG 0.563573 7_3:+74468720 Msa1123550:CDS
ATAGGAAGAAACACATGGAA+TGG 0.563622 7_3:-74465867 None:intergenic
GCTGCTGGAATATTACTTTG+AGG 0.565988 7_3:-74468962 None:intergenic
AAGCTTGTGCTAATCCAAAA+GGG 0.570071 7_3:+74466967 Msa1123550:CDS
ATTTGAACAAGAAAATCACT+TGG 0.572128 7_3:-74466248 None:intergenic
ACTCTCAGATTCCCACATGT+TGG 0.572140 7_3:-74465984 None:intergenic
TGAATCCTTTACTCAACCAA+TGG 0.578454 7_3:+74468664 Msa1123550:CDS
GTTACAGGCTGTGATGAAAT+GGG 0.583692 7_3:-74465769 None:intergenic
AAACATGGTGTCAAGACTGA+AGG 0.585042 7_3:+74466055 Msa1123550:CDS
GCAAGACACAAGTATGGTGA+TGG 0.587211 7_3:+74466016 Msa1123550:CDS
ATAGTTATGGATGATATCCC+TGG 0.588860 7_3:+74466663 Msa1123550:CDS
GATGCAGCGAGTCTATAGCT+TGG 0.589137 7_3:+74466943 Msa1123550:CDS
TCAAATGCCTCAAATCCACC+AGG 0.589531 7_3:-74466681 None:intergenic
TATCCTCTTATATCTCGAAG+TGG 0.591595 7_3:+74466591 Msa1123550:CDS
TGAAAATGAAAAGACATGTA+TGG 0.594971 7_3:+74465065 Msa1123550:five_prime_UTR
ATGCTAAAGCAAGAGTGGCA+AGG 0.595719 7_3:+74467735 Msa1123550:CDS
CATGAAACAGTATCTTTCTG+AGG 0.597213 7_3:-74467437 None:intergenic
TGCATGCTGCACAAAATGAA+AGG 0.608887 7_3:+74468555 Msa1123550:CDS
TGAAAGATACAAGTCCAAGT+AGG 0.614508 7_3:+74467057 Msa1123550:CDS
TGTTGACAGTTATCTTACAG+AGG 0.625756 7_3:+74467760 Msa1123550:CDS
ATGAAAAGACATGTATGGTG+AGG 0.631369 7_3:+74465070 Msa1123550:five_prime_UTR
GAAACAGTATCTTTCTGAGG+AGG 0.634508 7_3:-74467434 None:intergenic
ATGCAACTAAATGGCTACAA+GGG 0.636403 7_3:+74467213 Msa1123550:CDS
ACACCACAATCATTCCAAGA+AGG 0.638741 7_3:+74468716 Msa1123550:CDS
GTCTTCAAGCTAAAGAACAA+AGG 0.650300 7_3:+74467381 Msa1123550:CDS
CTTCACATGATTGTAGCAGG+TGG 0.651151 7_3:+74467338 Msa1123550:CDS
GCTGTGAGAAGCTTTCACCT+TGG 0.658908 7_3:+74466895 Msa1123550:CDS
TCTTCAAACCACCAATCAGG+AGG 0.664130 7_3:-74467092 None:intergenic
ATTCTCACTTCAAACAAACA+TGG 0.669333 7_3:+74466040 Msa1123550:CDS
TGAGAATAGGAAGAAACACA+TGG 0.672730 7_3:-74465872 None:intergenic
GTTATGGATGATATCCCTGG+TGG 0.677226 7_3:+74466666 Msa1123550:CDS
GTTTCTGGCAATCCATTACG+CGG 0.691677 7_3:-74468514 None:intergenic
GGTAGTTGGATTAAAGGCGG+CGG 0.693718 7_3:+74467311 Msa1123550:CDS
ATGATGTTGATCTTGTTATG+CGG 0.706117 7_3:+74467615 Msa1123550:CDS
AGCGGTAGTTGGATTAAAGG+CGG 0.709972 7_3:+74467308 Msa1123550:CDS
CAAATGCCTCAAATCCACCA+GGG 0.743591 7_3:-74466680 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAGAATAAGAAATAAA+AGG + chr7_3:74465583-74465602 Msa1123550:intron 10.0%
!! AAGTTATCTTAAAAAATTGT+CGG - chr7_3:74465834-74465853 None:intergenic 15.0%
!!! GAATCTAGTATTTTTTTTAA+TGG + chr7_3:74466161-74466180 Msa1123550:intron 15.0%
!!! ATATCATTATTATTCCATTT+TGG - chr7_3:74467038-74467057 None:intergenic 15.0%
!!! TTAATTCCTTGTTATAATAA+AGG + chr7_3:74467578-74467597 Msa1123550:CDS 15.0%
!! TTCAAAATAATTCTTGAAAT+TGG + chr7_3:74468227-74468246 Msa1123550:intron 15.0%
!!! AGAAAAGTATCAAAATATTT+AGG + chr7_3:74469239-74469258 Msa1123550:three_prime_UTR 15.0%
!! AAAATATTTAGGCTAAAATA+TGG + chr7_3:74469250-74469269 Msa1123550:three_prime_UTR 15.0%
!! TATGTATAACTGTATATGTA+AGG - chr7_3:74465122-74465141 None:intergenic 20.0%
!!! TGTTGGTTTTTTATACTATT+TGG - chr7_3:74465473-74465492 None:intergenic 20.0%
!! ACTTAAAAAATGATGTATGT+TGG - chr7_3:74465490-74465509 None:intergenic 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG + chr7_3:74465586-74465605 Msa1123550:intron 20.0%
!! ACATAGAACAAAAAAATTGT+TGG - chr7_3:74465799-74465818 None:intergenic 20.0%
!!! ATTCTTAAAAGCATTTTCAA+AGG - chr7_3:74466145-74466164 None:intergenic 20.0%
!! ACCTATGAGTTTATAATTTA+TGG + chr7_3:74466349-74466368 Msa1123550:intron 20.0%
!! TCCATAAATTATAAACTCAT+AGG - chr7_3:74466353-74466372 None:intergenic 20.0%
!!! ACTTAAATATTCGTTTTTGT+AGG + chr7_3:74466412-74466431 Msa1123550:intron 20.0%
!!! AAGTTGAACAAAATTTTGTA+CGG + chr7_3:74466460-74466479 Msa1123550:intron 20.0%
!!! TTACTTATTTACCTTTTCAA+TGG + chr7_3:74467923-74467942 Msa1123550:intron 20.0%
!!! ATGTTTTATCTTACTTTAAG+TGG + chr7_3:74467989-74468008 Msa1123550:intron 20.0%
!!! TCAATTCAAAGACTATTTTA+GGG + chr7_3:74468334-74468353 Msa1123550:intron 20.0%
!!! TTGAGATTTTCTTATCTTAT+AGG - chr7_3:74469042-74469061 None:intergenic 20.0%
! TGAAAATGAAAAGACATGTA+TGG + chr7_3:74465065-74465084 Msa1123550:five_prime_UTR 25.0%
! TGAGTATATTAGATTTGGAT+TGG - chr7_3:74465157-74465176 None:intergenic 25.0%
! GCTAATGAGTATATTAGATT+TGG - chr7_3:74465162-74465181 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG + chr7_3:74465590-74465609 Msa1123550:intron 25.0%
! GTTGAATGAAAAAAAACCAT+TGG + chr7_3:74465620-74465639 Msa1123550:intron 25.0%
! TAGAACAAAAAAATTGTTGG+AGG - chr7_3:74465796-74465815 None:intergenic 25.0%
!! TAAATAAGTTGAGTGAGAAT+AGG - chr7_3:74465888-74465907 None:intergenic 25.0%
!! ACAAAATGTACTGTTCTAAA+AGG - chr7_3:74465944-74465963 None:intergenic 25.0%
! ATCTAGTATTATTCTAATGC+AGG + chr7_3:74466207-74466226 Msa1123550:intron 25.0%
! ATTTGAACAAGAAAATCACT+TGG - chr7_3:74466251-74466270 None:intergenic 25.0%
!! AGTGATTTTCTTGTTCAAAT+TGG + chr7_3:74466251-74466270 Msa1123550:CDS 25.0%
!! TTTTTATACGAAGAGAGATT+AGG + chr7_3:74466506-74466525 Msa1123550:intron 25.0%
! ATAACTATCTTATTCACATC+CGG - chr7_3:74466651-74466670 None:intergenic 25.0%
!! CAAAAATTTCAAGTCCAAAA+TGG + chr7_3:74467021-74467040 Msa1123550:CDS 25.0%
! ATTACTGCTATTAAGGTAAA+AGG + chr7_3:74467152-74467171 Msa1123550:CDS 25.0%
! TAATGCATTATGCAACTAAA+TGG + chr7_3:74467204-74467223 Msa1123550:CDS 25.0%
! AATAGTAATAGTAGTAGTAG+TGG + chr7_3:74467284-74467303 Msa1123550:CDS 25.0%
!!! TCATTTTCTGAGAAACATAT+GGG + chr7_3:74467695-74467714 Msa1123550:CDS 25.0%
! AATAAGTAAATCCTAGAAAC+AGG - chr7_3:74467912-74467931 None:intergenic 25.0%
! ATGACATAAAACCATTGAAA+AGG - chr7_3:74467937-74467956 None:intergenic 25.0%
! AGTGGATAAATATACATAGA+AGG + chr7_3:74468007-74468026 Msa1123550:intron 25.0%
!! ACAAAATTGACTGACTTAAA+AGG + chr7_3:74468291-74468310 Msa1123550:intron 25.0%
!! CTCAATTCAAAGACTATTTT+AGG + chr7_3:74468333-74468352 Msa1123550:intron 25.0%
!!! GTATATTGATGATGAATGTA+CGG + chr7_3:74468394-74468413 Msa1123550:intron 25.0%
! ATTCAACATCTTTCAAAGAA+GGG - chr7_3:74468649-74468668 None:intergenic 25.0%
GAATAAGAAATAAAAGGTGG+TGG + chr7_3:74465589-74465608 Msa1123550:intron 30.0%
ATAAGAAATAAAAGGTGGTG+GGG + chr7_3:74465591-74465610 Msa1123550:intron 30.0%
ATGAAAAAAAACCATTGGAG+AGG + chr7_3:74465625-74465644 Msa1123550:intron 30.0%
!! ATGTTGATGACCATTGTAAA+TGG + chr7_3:74465733-74465752 Msa1123550:intron 30.0%
AGTACTAAGACCATTTACAA+TGG - chr7_3:74465746-74465765 None:intergenic 30.0%
ATTCTCACTTCAAACAAACA+TGG + chr7_3:74466040-74466059 Msa1123550:CDS 30.0%
!! GCCTTTACTTTGCTTTTATA+CGG + chr7_3:74466389-74466408 Msa1123550:intron 30.0%
TCCGTATAAAAGCAAAGTAA+AGG - chr7_3:74466393-74466412 None:intergenic 30.0%
GAACACAAATAATTCATCAG+TGG - chr7_3:74466548-74466567 None:intergenic 30.0%
GGATGTGAATAAGATAGTTA+TGG + chr7_3:74466650-74466669 Msa1123550:CDS 30.0%
ATGACAGAAGATTTAGAAGA+AGG + chr7_3:74466792-74466811 Msa1123550:CDS 30.0%
!!! GCTATGTTGTTTTATCATCA+TGG + chr7_3:74466847-74466866 Msa1123550:CDS 30.0%
CTAATCCAAAAGGGATAAAA+TGG + chr7_3:74466976-74466995 Msa1123550:CDS 30.0%
TTGAAGATGTTTCAATCCTT+AGG + chr7_3:74467108-74467127 Msa1123550:CDS 30.0%
TAACAAAGTGATCAATCCTA+AGG - chr7_3:74467127-74467146 None:intergenic 30.0%
TAGAGTCATTACTGCTATTA+AGG + chr7_3:74467145-74467164 Msa1123550:CDS 30.0%
! GGAATGAGATTTGAGTTAAT+TGG + chr7_3:74467173-74467192 Msa1123550:CDS 30.0%
GAGAATGGCAATTATGTTAA+AGG + chr7_3:74467481-74467500 Msa1123550:CDS 30.0%
TGGTTACTGAATTAGAGAAA+AGG + chr7_3:74467516-74467535 Msa1123550:CDS 30.0%
GGTTACTGAATTAGAGAAAA+GGG + chr7_3:74467517-74467536 Msa1123550:CDS 30.0%
GTCTCTCCTTTATTATAACA+AGG - chr7_3:74467587-74467606 None:intergenic 30.0%
! ATGATGTTGATCTTGTTATG+CGG + chr7_3:74467615-74467634 Msa1123550:CDS 30.0%
! TCAGAAAATGACTGTCTTTT+CGG - chr7_3:74467686-74467705 None:intergenic 30.0%
!! GTCATTTTCTGAGAAACATA+TGG + chr7_3:74467694-74467713 Msa1123550:CDS 30.0%
TCTTTCATTGACAAAGTTTC+AGG + chr7_3:74467799-74467818 Msa1123550:CDS 30.0%
!! AGCTATTGATTCCTATCTTA+AGG + chr7_3:74467877-74467896 Msa1123550:CDS 30.0%
GGAAGTAATTACCTTAAGAT+AGG - chr7_3:74467891-74467910 None:intergenic 30.0%
!! CATAGTCGCATAATTTGTTA+CGG + chr7_3:74468036-74468055 Msa1123550:intron 30.0%
!! TTTGCAAAAGTACTGCAAAT+TGG - chr7_3:74468087-74468106 None:intergenic 30.0%
! TTTGCAGTACTTTTGCAAAT+TGG + chr7_3:74468088-74468107 Msa1123550:intron 30.0%
GCACTTAATATCCATTAGTA+TGG + chr7_3:74468114-74468133 Msa1123550:intron 30.0%
TCTACTCATTTCCATACTAA+TGG - chr7_3:74468128-74468147 None:intergenic 30.0%
CTACAATTTCAAAGGCAAAT+CGG - chr7_3:74468172-74468191 None:intergenic 30.0%
TCAGAACTCTACAATTTCAA+AGG - chr7_3:74468180-74468199 None:intergenic 30.0%
TGGTGATTCACTCAAATATT+AGG + chr7_3:74468364-74468383 Msa1123550:intron 30.0%
TTCACTAGTAAGAAATCCAA+TGG - chr7_3:74468441-74468460 None:intergenic 30.0%
TACTAGTGAAGTAAACTAAC+AGG + chr7_3:74468451-74468470 Msa1123550:intron 30.0%
AAAATGAAAGGCTTCCATTA+AGG + chr7_3:74468567-74468586 Msa1123550:CDS 30.0%
AAATGAAAGGCTTCCATTAA+GGG + chr7_3:74468568-74468587 Msa1123550:CDS 30.0%
GATTCAACATCTTTCAAAGA+AGG - chr7_3:74468650-74468669 None:intergenic 30.0%
! TTTGGAGCTTCAAAATGATA+TGG + chr7_3:74468805-74468824 Msa1123550:CDS 30.0%
ACAGAAAAACTACTAGAAGA+TGG + chr7_3:74468996-74469015 Msa1123550:CDS 30.0%
CTTGAAAAAAGTGATTGACT+TGG - chr7_3:74469093-74469112 None:intergenic 30.0%
ATGAAAAGACATGTATGGTG+AGG + chr7_3:74465070-74465089 Msa1123550:five_prime_UTR 35.0%
TAGCATTAGACTATGTGCAA+TGG + chr7_3:74465178-74465197 Msa1123550:intron 35.0%
AGCATTAGACTATGTGCAAT+GGG + chr7_3:74465179-74465198 Msa1123550:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr7_3:74465378-74465397 None:intergenic 35.0%
TTTATGCATGCCATGTGAAA+TGG - chr7_3:74465430-74465449 None:intergenic 35.0%
TTCAACTTTAACCTCTCCAA+TGG - chr7_3:74465639-74465658 None:intergenic 35.0%
TTAAGAGAGAGAAGATGATG+TGG + chr7_3:74465670-74465689 Msa1123550:intron 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + chr7_3:74465693-74465712 Msa1123550:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + chr7_3:74465694-74465713 Msa1123550:intron 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + chr7_3:74465703-74465722 Msa1123550:intron 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + chr7_3:74465704-74465723 Msa1123550:intron 35.0%
!! AAAATTGTTGGAGGTGTTAC+AGG - chr7_3:74465787-74465806 None:intergenic 35.0%
ATAGGAAGAAACACATGGAA+TGG - chr7_3:74465870-74465889 None:intergenic 35.0%
TGAGAATAGGAAGAAACACA+TGG - chr7_3:74465875-74465894 None:intergenic 35.0%
!!! AGTTTTTTCCATCCAACATG+TGG + chr7_3:74465972-74465991 Msa1123550:exon 35.0%
!!! GTTTTTTCCATCCAACATGT+GGG + chr7_3:74465973-74465992 Msa1123550:exon 35.0%
ACTGAAGGATTTCTTCAAAG+AGG + chr7_3:74466070-74466089 Msa1123550:CDS 35.0%
GAGGATACTTTCACAACAAA+GGG - chr7_3:74466578-74466597 None:intergenic 35.0%
AGAGGATACTTTCACAACAA+AGG - chr7_3:74466579-74466598 None:intergenic 35.0%
TATCCTCTTATATCTCGAAG+TGG + chr7_3:74466591-74466610 Msa1123550:CDS 35.0%
TTTCCACTTCGAGATATAAG+AGG - chr7_3:74466597-74466616 None:intergenic 35.0%
ATAGTTATGGATGATATCCC+TGG + chr7_3:74466663-74466682 Msa1123550:CDS 35.0%
AGCAATTCCATAGCAGAATT+TGG - chr7_3:74466715-74466734 None:intergenic 35.0%
!! ATTGCTGTTGATTTAACAGC+AGG + chr7_3:74466729-74466748 Msa1123550:CDS 35.0%
TTAACAGCAGGAAACATTTC+TGG + chr7_3:74466741-74466760 Msa1123550:CDS 35.0%
ATTTGAAGATTCTCTGACCA+AGG - chr7_3:74466915-74466934 None:intergenic 35.0%
AAAGCTTGTGCTAATCCAAA+AGG + chr7_3:74466966-74466985 Msa1123550:CDS 35.0%
AAGCTTGTGCTAATCCAAAA+GGG + chr7_3:74466967-74466986 Msa1123550:CDS 35.0%
! TAGGACCATTTTATCCCTTT+TGG - chr7_3:74466984-74467003 None:intergenic 35.0%
TGAAAGATACAAGTCCAAGT+AGG + chr7_3:74467057-74467076 Msa1123550:CDS 35.0%
TATGCAACTAAATGGCTACA+AGG + chr7_3:74467212-74467231 Msa1123550:CDS 35.0%
ATGCAACTAAATGGCTACAA+GGG + chr7_3:74467213-74467232 Msa1123550:CDS 35.0%
AATAGTAGTAGTAGTGGTAG+CGG + chr7_3:74467290-74467309 Msa1123550:CDS 35.0%
GTCTTCAAGCTAAAGAACAA+AGG + chr7_3:74467381-74467400 Msa1123550:CDS 35.0%
CATGAAACAGTATCTTTCTG+AGG - chr7_3:74467440-74467459 None:intergenic 35.0%
TTTCATGCACTTTCCTTCTT+AGG + chr7_3:74467453-74467472 Msa1123550:CDS 35.0%
TCTAATTCAGTAACCAATGC+AGG - chr7_3:74467512-74467531 None:intergenic 35.0%
ACTGAATTAGAGAAAAGGGT+TGG + chr7_3:74467521-74467540 Msa1123550:CDS 35.0%
! TTCTGAGAAACATATGGGAT+TGG + chr7_3:74467700-74467719 Msa1123550:CDS 35.0%
TCTGAGAAACATATGGGATT+GGG + chr7_3:74467701-74467720 Msa1123550:CDS 35.0%
TGTTGACAGTTATCTTACAG+AGG + chr7_3:74467760-74467779 Msa1123550:CDS 35.0%
TCTATAAAGTCCATCATCAC+AGG - chr7_3:74467858-74467877 None:intergenic 35.0%
! GGTAATTACTTCCTGTTTCT+AGG + chr7_3:74467898-74467917 Msa1123550:intron 35.0%
! GTCATCTAGAGTTACACATT+TGG + chr7_3:74467952-74467971 Msa1123550:intron 35.0%
CTAGAGTTACACATTTGGTT+TGG + chr7_3:74467957-74467976 Msa1123550:intron 35.0%
CTGACTTAAAAGGAATAACG+TGG + chr7_3:74468301-74468320 Msa1123550:intron 35.0%
!! GACTATTTTAGGGACAACTT+TGG + chr7_3:74468344-74468363 Msa1123550:intron 35.0%
CAGCTTAACTGTTATTCCAT+TGG + chr7_3:74468422-74468441 Msa1123550:intron 35.0%
ATGCATCAATTGAGAGTTTC+TGG - chr7_3:74468532-74468551 None:intergenic 35.0%
TCTTTACCTGTTCTGCAAAT+AGG - chr7_3:74468607-74468626 None:intergenic 35.0%
AACATCTTTCAAAGAAGGGT+TGG - chr7_3:74468645-74468664 None:intergenic 35.0%
TGAATCCTTTACTCAACCAA+TGG + chr7_3:74468664-74468683 Msa1123550:CDS 35.0%
! TGTAACCATTGGTTGAGTAA+AGG - chr7_3:74468672-74468691 None:intergenic 35.0%
!! GTTTTTCGGTTTGTAACCAT+TGG - chr7_3:74468683-74468702 None:intergenic 35.0%
GAGTGTGAAAGCTAAGTATT+TGG + chr7_3:74468787-74468806 Msa1123550:CDS 35.0%
! GTAGTTTTTCTGTTCTGTTC+TGG - chr7_3:74468989-74469008 None:intergenic 35.0%
AGGCATAAAGACACTGAAAC+TGG + chr7_3:74465090-74465109 Msa1123550:five_prime_UTR 40.0%
GTTTAACCTGACAGTCAACA+AGG + chr7_3:74465205-74465224 Msa1123550:intron 40.0%
AACAAGGAAAACCAGTGCAA+TGG + chr7_3:74465221-74465240 Msa1123550:intron 40.0%
TGGATGAGAGAGAGGATTAA+CGG + chr7_3:74465272-74465291 Msa1123550:intron 40.0%
GCATTCTGTGGCAGATTAAT+TGG - chr7_3:74465306-74465325 None:intergenic 40.0%
! AGAAGATGATGTGGAGTGTT+GGG + chr7_3:74465679-74465698 Msa1123550:intron 40.0%
GTTACAGGCTGTGATGAAAT+GGG - chr7_3:74465772-74465791 None:intergenic 40.0%
TGTTACAGGCTGTGATGAAA+TGG - chr7_3:74465773-74465792 None:intergenic 40.0%
GAAGAAACACATGGAATGGT+TGG - chr7_3:74465866-74465885 None:intergenic 40.0%
TCAACTGCAAGACACAAGTA+TGG + chr7_3:74466010-74466029 Msa1123550:CDS 40.0%
! AAACATGGTGTCAAGACTGA+AGG + chr7_3:74466055-74466074 Msa1123550:CDS 40.0%
TTCTTCAAAGAGGTCACTCT+TGG + chr7_3:74466080-74466099 Msa1123550:CDS 40.0%
AGCTAACTTCCACTTGCATA+AGG + chr7_3:74466277-74466296 Msa1123550:CDS 40.0%
AGATAGCTACCTTATGCAAG+TGG - chr7_3:74466289-74466308 None:intergenic 40.0%
CATATATGAATCACGCGAAC+CGG + chr7_3:74466629-74466648 Msa1123550:CDS 40.0%
! TGATGATGTTCTTCCAGTGT+AGG - chr7_3:74467003-74467022 None:intergenic 40.0%
! GGAACTAGTTGATTCCTACT+TGG - chr7_3:74467074-74467093 None:intergenic 40.0%
ATCAACTAGTTCCTCCTGAT+TGG + chr7_3:74467081-74467100 Msa1123550:CDS 40.0%
ACATCTTCAAACCACCAATC+AGG - chr7_3:74467098-74467117 None:intergenic 40.0%
AACTAAATGGCTACAAGGGT+TGG + chr7_3:74467217-74467236 Msa1123550:CDS 40.0%
! GAAACAGTATCTTTCTGAGG+AGG - chr7_3:74467437-74467456 None:intergenic 40.0%
CCACTCTTGCTTTAGCATTA+AGG - chr7_3:74467733-74467752 None:intergenic 40.0%
CCTTAATGCTAAAGCAAGAG+TGG + chr7_3:74467730-74467749 Msa1123550:CDS 40.0%
TTACAGAGGTTTCAAGAGAC+AGG + chr7_3:74467774-74467793 Msa1123550:CDS 40.0%
TTCGCAAACCAATTCACGTT+TGG - chr7_3:74468062-74468081 None:intergenic 40.0%
TAAAAGGAATAACGTGGTCG+AGG + chr7_3:74468307-74468326 Msa1123550:intron 40.0%
! CTTTCATGCTCAGAAAGTGT+TGG - chr7_3:74468482-74468501 None:intergenic 40.0%
CAACACTTTCTGAGCATGAA+AGG + chr7_3:74468480-74468499 Msa1123550:CDS 40.0%
TGCATGCTGCACAAAATGAA+AGG + chr7_3:74468555-74468574 Msa1123550:CDS 40.0%
ACTTGCACAACTACCCTTAA+TGG - chr7_3:74468584-74468603 None:intergenic 40.0%
AAACCGAAAAACACTTCTCG+AGG + chr7_3:74468691-74468710 Msa1123550:CDS 40.0%
ACACCACAATCATTCCAAGA+AGG + chr7_3:74468716-74468735 Msa1123550:CDS 40.0%
CATCCTTCTTGGAATGATTG+TGG - chr7_3:74468722-74468741 None:intergenic 40.0%
CACAATCATTCCAAGAAGGA+TGG + chr7_3:74468720-74468739 Msa1123550:CDS 40.0%
CAACACACTAAAGTTTGAGC+TGG + chr7_3:74468763-74468782 Msa1123550:CDS 40.0%
GCTGCTGGAATATTACTTTG+AGG - chr7_3:74468965-74468984 None:intergenic 40.0%
!! GGTTTTCCTTGTTGACTGTC+AGG - chr7_3:74465214-74465233 None:intergenic 45.0%
ACCTCTGTTGAATGAACTGC+TGG + chr7_3:74465252-74465271 Msa1123550:intron 45.0%
TCCAGCAGTTCATTCAACAG+AGG - chr7_3:74465256-74465275 None:intergenic 45.0%
AGAATGCTCGCCATTTCACA+TGG + chr7_3:74465365-74465384 Msa1123550:intron 45.0%
GTGAAATGGCGAGCACTATT+TGG - chr7_3:74465416-74465435 None:intergenic 45.0%
ATAGTGCTCGCCATTTCACA+TGG + chr7_3:74465417-74465436 Msa1123550:intron 45.0%
GAGAAGATGATGTGGAGTGT+TGG + chr7_3:74465678-74465697 Msa1123550:intron 45.0%
TCAGATTCCCACATGTTGGA+TGG - chr7_3:74465983-74466002 None:intergenic 45.0%
ACTCTCAGATTCCCACATGT+TGG - chr7_3:74465987-74466006 None:intergenic 45.0%
GCAAGACACAAGTATGGTGA+TGG + chr7_3:74466016-74466035 Msa1123550:CDS 45.0%
GTTATGGATGATATCCCTGG+TGG + chr7_3:74466666-74466685 Msa1123550:CDS 45.0%
!! TGATATCCCTGGTGGATTTG+AGG + chr7_3:74466674-74466693 Msa1123550:CDS 45.0%
CAAATGCCTCAAATCCACCA+GGG - chr7_3:74466683-74466702 None:intergenic 45.0%
TCAAATGCCTCAAATCCACC+AGG - chr7_3:74466684-74466703 None:intergenic 45.0%
CTTGCAGCCAAATTCTGCTA+TGG + chr7_3:74466705-74466724 Msa1123550:CDS 45.0%
GGGATAAAATGGTCCTACAC+TGG + chr7_3:74466987-74467006 Msa1123550:CDS 45.0%
AACTAGTTCCTCCTGATTGG+TGG + chr7_3:74467084-74467103 Msa1123550:CDS 45.0%
TCTTCAAACCACCAATCAGG+AGG - chr7_3:74467095-74467114 None:intergenic 45.0%
TTCGATGAAGCGAGCAATTG+TGG + chr7_3:74467260-74467279 Msa1123550:CDS 45.0%
! GGTAGCGGTAGTTGGATTAA+AGG + chr7_3:74467305-74467324 Msa1123550:CDS 45.0%
AGCGGTAGTTGGATTAAAGG+CGG + chr7_3:74467308-74467327 Msa1123550:CDS 45.0%
GGACTTCACATGATTGTAGC+AGG + chr7_3:74467335-74467354 Msa1123550:CDS 45.0%
CTTCACATGATTGTAGCAGG+TGG + chr7_3:74467338-74467357 Msa1123550:CDS 45.0%
CCATTCTCAGAAGCCTAAGA+AGG - chr7_3:74467469-74467488 None:intergenic 45.0%
! CCTTCTTAGGCTTCTGAGAA+TGG + chr7_3:74467466-74467485 Msa1123550:CDS 45.0%
GTTAAAGGTTGCACCTGCAT+TGG + chr7_3:74467496-74467515 Msa1123550:CDS 45.0%
ATGCTAAAGCAAGAGTGGCA+AGG + chr7_3:74467735-74467754 Msa1123550:CDS 45.0%
! TCACAGGTTCTAGCTGATTC+AGG - chr7_3:74467842-74467861 None:intergenic 45.0%
TCAGCTAGAACCTGTGATGA+TGG + chr7_3:74467845-74467864 Msa1123550:CDS 45.0%
TGTTACGGCCAAACGTGAAT+TGG + chr7_3:74468051-74468070 Msa1123550:intron 45.0%
!! GTTTCTGGCAATCCATTACG+CGG - chr7_3:74468517-74468536 None:intergenic 45.0%
GCAAGTCCTATTTGCAGAAC+AGG + chr7_3:74468598-74468617 Msa1123550:CDS 45.0%
!!! TCGCCTCGAGAAGTGTTTTT+CGG - chr7_3:74468697-74468716 None:intergenic 45.0%
TAGCAGTTGTCCATCCTTCT+TGG - chr7_3:74468733-74468752 None:intergenic 45.0%
! AGCAGAAGCATACTTCAGCT+TGG + chr7_3:74468861-74468880 Msa1123550:CDS 45.0%
CATACTTCAGCTTGGAGTAG+TGG + chr7_3:74468869-74468888 Msa1123550:CDS 45.0%
GGTTCAACATGCCATTGCAC+TGG - chr7_3:74465235-74465254 None:intergenic 50.0%
TGAACTGCTGGATGAGAGAG+AGG + chr7_3:74465264-74465283 Msa1123550:intron 50.0%
CATTCTGTGGCAATCCTGTG+CGG - chr7_3:74465351-74465370 None:intergenic 50.0%
GTGAAATGGCGAGCATTCTG+TGG - chr7_3:74465364-74465383 None:intergenic 50.0%
GCTGTGAGAAGCTTTCACCT+TGG + chr7_3:74466895-74466914 Msa1123550:CDS 50.0%
GATGCAGCGAGTCTATAGCT+TGG + chr7_3:74466943-74466962 Msa1123550:CDS 50.0%
!! GTAGTAGTGGTAGCGGTAGT+TGG + chr7_3:74467297-74467316 Msa1123550:CDS 50.0%
GGTAGTTGGATTAAAGGCGG+CGG + chr7_3:74467311-74467330 Msa1123550:CDS 50.0%
CTTCAGCTTGGAGTAGTGGT+TGG + chr7_3:74468873-74468892 Msa1123550:CDS 50.0%
ATCTGCCACAGAATGCCACG+TGG + chr7_3:74465310-74465329 Msa1123550:intron 55.0%
AGTTGGATTAAAGGCGGCGG+TGG + chr7_3:74467314-74467333 Msa1123550:CDS 55.0%
!! CTGTTCTGTTCTGGAGCTGC+TGG - chr7_3:74468980-74468999 None:intergenic 55.0%
TGCCACAGAATGCCACGTGG+CGG + chr7_3:74465313-74465332 Msa1123550:intron 60.0%
GAAGCGACTCTGCCGCGTAA+TGG + chr7_3:74468502-74468521 Msa1123550:CDS 60.0%
TCCAATTGCACGCCGCCACG+TGG - chr7_3:74465328-74465347 None:intergenic 65.0%
GGCGTGCAATTGGACCGCAC+AGG + chr7_3:74465334-74465353 Msa1123550:intron 65.0%
CGCCGCCACGTGGCATTCTG+TGG - chr7_3:74465318-74465337 None:intergenic 70.0%
GCCACGTGGCGGCGTGCAAT+TGG + chr7_3:74465324-74465343 Msa1123550:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74465053 74469273 74465053 ID=Msa1123550;Name=Msa1123550
chr7_3 mRNA 74465053 74469273 74465053 ID=Msa1123550-mRNA-1;Parent=Msa1123550;Name=Msa1123550-mRNA-1;_AED=0.26;_eAED=0.26;_QI=361|1|1|1|0.75|0.6|5|237|684
chr7_3 exon 74465053 74465186 74465053 ID=Msa1123550-mRNA-1:exon:19787;Parent=Msa1123550-mRNA-1
chr7_3 exon 74465762 74466101 74465762 ID=Msa1123550-mRNA-1:exon:19788;Parent=Msa1123550-mRNA-1
chr7_3 exon 74466229 74466298 74466229 ID=Msa1123550-mRNA-1:exon:19789;Parent=Msa1123550-mRNA-1
chr7_3 exon 74466591 74467898 74466591 ID=Msa1123550-mRNA-1:exon:19790;Parent=Msa1123550-mRNA-1
chr7_3 exon 74468473 74469273 74468473 ID=Msa1123550-mRNA-1:exon:19791;Parent=Msa1123550-mRNA-1
chr7_3 five_prime_UTR 74465053 74465186 74465053 ID=Msa1123550-mRNA-1:five_prime_utr;Parent=Msa1123550-mRNA-1
chr7_3 five_prime_UTR 74465762 74465988 74465762 ID=Msa1123550-mRNA-1:five_prime_utr;Parent=Msa1123550-mRNA-1
chr7_3 CDS 74465989 74466101 74465989 ID=Msa1123550-mRNA-1:cds;Parent=Msa1123550-mRNA-1
chr7_3 CDS 74466229 74466298 74466229 ID=Msa1123550-mRNA-1:cds;Parent=Msa1123550-mRNA-1
chr7_3 CDS 74466591 74467898 74466591 ID=Msa1123550-mRNA-1:cds;Parent=Msa1123550-mRNA-1
chr7_3 CDS 74468473 74469036 74468473 ID=Msa1123550-mRNA-1:cds;Parent=Msa1123550-mRNA-1
chr7_3 three_prime_UTR 74469037 74469273 74469037 ID=Msa1123550-mRNA-1:three_prime_utr;Parent=Msa1123550-mRNA-1
Gene Sequence

>Msa1123550

ATGTGGGAATCTGAGAGTGATTCAACTGCAAGACACAAGTATGGTGATGGAATTCTCACTTCAAACAAACATGGTGTCAAGACTGAAGGATTTCTTCAAAGAGGTCACTCTTGGTATGTTGCAACTGACGTTCCAAGTGATTTTCTTGTTCAAATTGGAGAAGCTAACTTCCACTTGCATAAGTATCCTCTTATATCTCGAAGTGGAAAGCTGAGTAGAATCATATATGAATCACGCGAACCGGATGTGAATAAGATAGTTATGGATGATATCCCTGGTGGATTTGAGGCATTTGAACTTGCAGCCAAATTCTGCTATGGAATTGCTGTTGATTTAACAGCAGGAAACATTTCTGGACTAAGATGTGCTGCTGAGTATCTAGAAATGACAGAAGATTTAGAAGAAGGCAATCTTATATTCAAAACAGAAGCATTTCTTAGCTATGTTGTTTTATCATCATGGAGAGACTCTATAGTAGTTTTGAAAAGCTGTGAGAAGCTTTCACCTTGGTCAGAGAATCTTCAAATCGTTCGAAGATGCAGCGAGTCTATAGCTTGGAAAGCTTGTGCTAATCCAAAAGGGATAAAATGGTCCTACACTGGAAGAACATCATCAAAAATTTCAAGTCCAAAATGGAATAATAATGATATGAAAGATACAAGTCCAAGTAGGAATCAACTAGTTCCTCCTGATTGGTGGTTTGAAGATGTTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCATTACTGCTATTAAGGTAAAAGGAATGAGATTTGAGTTAATTGGTGCTGCAATAATGCATTATGCAACTAAATGGCTACAAGGGTTGGTTAGTGAAACATCAATCACATTCGATGAAGCGAGCAATTGTGGTAATAGTAATAGTAGTAGTAGTGGTAGCGGTAGTTGGATTAAAGGCGGCGGTGGACTTCACATGATTGTAGCAGGTGGAACTAGAGATGAAACTTCAAGTCTTCAAGCTAAAGAACAAAGGATGATAATTGAGAGTCTTATAAGCATTATTCCTCCTCAGAAAGATACTGTTTCATGCACTTTCCTTCTTAGGCTTCTGAGAATGGCAATTATGTTAAAGGTTGCACCTGCATTGGTTACTGAATTAGAGAAAAGGGTTGGAATGCAATTCGAGCAAGCTACACTTGCTGATCTATTAATTCCTTGTTATAATAAAGGAGAGACAATGATGTATGATGTTGATCTTGTTATGCGGCTGCTTGAGCATTTTCTTGTACAAGAAGTGACTGAAAACTCTAGTCCGAAAAGACAGTCATTTTCTGAGAAACATATGGGATTGGGATGTAACCTTAATGCTAAAGCAAGAGTGGCAAGGCTTGTTGACAGTTATCTTACAGAGGTTTCAAGAGACAGGAATCTTTCATTGACAAAGTTTCAGGTACTTGCTGAAGCTTTGCCTGAATCAGCTAGAACCTGTGATGATGGACTTTATAGAGCTATTGATTCCTATCTTAAGGCACATCCAACACTTTCTGAGCATGAAAGGAAGCGACTCTGCCGCGTAATGGATTGCCAGAAACTCTCAATTGATGCATGCATGCATGCTGCACAAAATGAAAGGCTTCCATTAAGGGTAGTTGTGCAAGTCCTATTTGCAGAACAGGTAAAGATAAGTACTGCATTATCCAACCCTTCTTTGAAAGATGTTGAATCCTTTACTCAACCAATGGTTACAAACCGAAAAACACTTCTCGAGGCGACACCACAATCATTCCAAGAAGGATGGACAACTGCTAAAAAAGATGTCAACACACTAAAGTTTGAGCTGGAGAGTGTGAAAGCTAAGTATTTGGAGCTTCAAAATGATATGGAAAATTTGCAGAAACAATTTGATAAGATGTTAAAGCAGAAGCATACTTCAGCTTGGAGTAGTGGTTGGAAGAAATTAAGCAAACTTACAAAGATGACAAATGTACAAAATCATGATCATGATCATGATAATTCACCTCAAAGTAATATTCCAGCAGCTCCAGAACAGAACAGAAAAACTACTAGAAGATGGAGAAATTCAATATCTTGA
Protein sequence

>Msa1123550

MWESESDSTARHKYGDGILTSNKHGVKTEGFLQRGHSWYVATDVPSDFLVQIGEANFHLHKYPLISRSGKLSRIIYESREPDVNKIVMDDIPGGFEAFELAAKFCYGIAVDLTAGNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWSENLQIVRRCSESIAWKACANPKGIKWSYTGRTSSKISSPKWNNNDMKDTSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYATKWLQGLVSETSITFDEASNCGNSNSSSSGSGSWIKGGGGLHMIVAGGTRDETSSLQAKEQRMIIESLISIIPPQKDTVSCTFLLRLLRMAIMLKVAPALVTELEKRVGMQFEQATLADLLIPCYNKGETMMYDVDLVMRLLEHFLVQEVTENSSPKRQSFSEKHMGLGCNLNAKARVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFAEQVKISTALSNPSLKDVESFTQPMVTNRKTLLEATPQSFQEGWTTAKKDVNTLKFELESVKAKYLELQNDMENLQKQFDKMLKQKHTSAWSSGWKKLSKLTKMTNVQNHDHDHDNSPQSNIPAAPEQNRKTTRRWRNSIS*