Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123680 | XP_003625544.2 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 3.86e-108 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123680 | sp|Q9LZ06|GSTL3_ARATH | 50.607 | 247 | 61 | 3 | 2 | 248 | 50 | 235 | 3.99e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123680 | G7L0P7 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 1.84e-108 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1123680 | 0.804755 | 1.855190e-49 | -8.615850e-47 |
| Msa0437110 | Msa1123680 | 0.964781 | 9.240711e-124 | -8.615850e-47 |
| Msa0340470 | Msa1123680 | 0.809209 | 2.118266e-50 | -8.615850e-47 |
| Msa0344980 | Msa1123680 | 0.810811 | 9.575006e-51 | -8.615850e-47 |
| Msa1123680 | Msa1169820 | 0.961551 | 7.810814e-120 | -8.615850e-47 |
| Msa1123680 | Msa1284680 | 0.800961 | 1.127182e-48 | -8.615850e-47 |
| Msa1123680 | Msa1372760 | 0.802468 | 5.529574e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123680 | MtrunA17_Chr7g0263221 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 3.55e-112 | 322 |
| Msa1123680 | MtrunA17_Chr1g0181861 | 58.800 | 250 | 42 | 3 | 2 | 251 | 49 | 237 | 4.05e-94 | 276 |
| Msa1123680 | MtrunA17_Chr1g0213361 | 45.565 | 248 | 73 | 4 | 2 | 249 | 130 | 315 | 1.07e-61 | 196 |
| Msa1123680 | MtrunA17_Chr1g0181851 | 46.559 | 247 | 38 | 4 | 2 | 248 | 45 | 197 | 1.26e-59 | 188 |
| Msa1123680 | MtrunA17_Chr1g0181841 | 77.778 | 72 | 16 | 0 | 2 | 73 | 70 | 141 | 2.76e-35 | 123 |
| Msa1123680 | MtrunA17_Chr3g0107731 | 30.055 | 183 | 101 | 7 | 32 | 204 | 59 | 224 | 1.47e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123680 | AT5G02790.1 | 50.607 | 247 | 61 | 3 | 2 | 248 | 50 | 235 | 4.05e-77 | 233 |
| Msa1123680 | AT5G02780.1 | 47.154 | 246 | 68 | 4 | 1 | 245 | 51 | 235 | 1.85e-68 | 211 |
| Msa1123680 | AT5G02780.3 | 47.154 | 246 | 68 | 4 | 1 | 245 | 51 | 235 | 1.85e-68 | 211 |
| Msa1123680 | AT5G02780.2 | 47.154 | 246 | 66 | 5 | 1 | 245 | 51 | 233 | 2.01e-66 | 206 |
| Msa1123680 | AT3G55040.1 | 43.373 | 249 | 80 | 3 | 2 | 250 | 102 | 289 | 1.73e-62 | 198 |
Find 69 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACTAATGATACTTTAT+TGG | 0.193930 | 7_3:-74636453 | None:intergenic |
| GCAGGCTCAACAGTGAAAAT+TGG | 0.195050 | 7_3:+74636396 | Msa1123680:intron |
| GGTGAAATATCTATAATAAT+TGG | 0.205562 | 7_3:+74636669 | Msa1123680:three_prime_UTR |
| AGACAGGCCTGTTTGGTATA+AGG | 0.282787 | 7_3:+74635058 | Msa1123680:CDS |
| TCACCAAACTCTTTCTTTGC+AGG | 0.295908 | 7_3:-74635362 | None:intergenic |
| TCCGTTTCCATTTGCGGAAC+AGG | 0.303576 | 7_3:-74636081 | None:intergenic |
| CCCATTTCCGTTTCCATTTG+CGG | 0.305037 | 7_3:-74636087 | None:intergenic |
| CAATGAAGAGTACAGATCTT+TGG | 0.308227 | 7_3:-74635414 | None:intergenic |
| CGGAAATGGGCCACAGAAAA+TGG | 0.312516 | 7_3:+74636100 | Msa1123680:CDS |
| AAAATATCAACAATTTCATT+TGG | 0.321951 | 7_3:-74636251 | None:intergenic |
| ACTACAAGACAAAATCAAAT+TGG | 0.371760 | 7_3:+74635019 | Msa1123680:CDS |
| AGGTCCTGCCTTTGATTACT+TGG | 0.371880 | 7_3:+74635547 | Msa1123680:intron |
| ACACCTCAGAAAAGACTATA+TGG | 0.374447 | 7_3:-74635902 | None:intergenic |
| TCAATCCATGCTGCAAGTTT+CGG | 0.375231 | 7_3:-74635951 | None:intergenic |
| TCCGCAAATGGAAACGGAAA+TGG | 0.375924 | 7_3:+74636086 | Msa1123680:CDS |
| TCTTTCAACAAATGGAATAT+AGG | 0.379083 | 7_3:-74635877 | None:intergenic |
| ACCTTCAAGACAGGCCTGTT+TGG | 0.380904 | 7_3:+74635051 | Msa1123680:CDS |
| GGCCTGTCTTGAAGGTTAAT+AGG | 0.408791 | 7_3:-74635044 | None:intergenic |
| ATATGGAATCTTTCAACAAA+TGG | 0.410892 | 7_3:-74635885 | None:intergenic |
| GTGAAATATCTATAATAATT+GGG | 0.411290 | 7_3:+74636670 | Msa1123680:three_prime_UTR |
| ACCAAACAGGCCTGTCTTGA+AGG | 0.413697 | 7_3:-74635052 | None:intergenic |
| AACTTAACCTGTTCCGCAAA+TGG | 0.414010 | 7_3:+74636074 | Msa1123680:CDS |
| TATGAATTGATTACAAATCA+AGG | 0.418475 | 7_3:+74636029 | Msa1123680:CDS |
| CAGGCTCAACAGTGAAAATT+GGG | 0.419928 | 7_3:+74636397 | Msa1123680:intron |
| TTCAAGCATGATATAATAGA+AGG | 0.420899 | 7_3:+74635924 | Msa1123680:CDS |
| GATCCTGCAAAGAAAGAGTT+TGG | 0.421571 | 7_3:+74635359 | Msa1123680:CDS |
| GGAGCACAATGGGAAGGTCT+TGG | 0.435080 | 7_3:+74635194 | Msa1123680:CDS |
| ACTTTCTCCTTATACCAAAC+AGG | 0.438140 | 7_3:-74635065 | None:intergenic |
| ATCAACAATTTCATTTGGAT+CGG | 0.455372 | 7_3:-74636246 | None:intergenic |
| TTCATAAACGAATGCAATTG+TGG | 0.455775 | 7_3:-74636012 | None:intergenic |
| GATTACTTGGAGAATGCTCT+TGG | 0.461042 | 7_3:+74635560 | Msa1123680:CDS |
| GAGCACAATGGGAAGGTCTT+GGG | 0.461051 | 7_3:+74635195 | Msa1123680:CDS |
| TGCCATCGTTGGAGCACAAT+GGG | 0.465276 | 7_3:+74635184 | Msa1123680:CDS |
| TACATAGATGTCAACTTTGA+GGG | 0.472144 | 7_3:+74635240 | Msa1123680:CDS |
| TTGATGATGGACAATTTCCT+AGG | 0.478787 | 7_3:+74635588 | Msa1123680:CDS |
| TTACATAGATGTCAACTTTG+AGG | 0.479491 | 7_3:+74635239 | Msa1123680:CDS |
| ACCTGTTCCGCAAATGGAAA+CGG | 0.480344 | 7_3:+74636080 | Msa1123680:CDS |
| CCGCAAATGGAAACGGAAAT+GGG | 0.488839 | 7_3:+74636087 | Msa1123680:CDS |
| TTGTCTTGTAGTCCCTGCAT+TGG | 0.490449 | 7_3:-74635008 | None:intergenic |
| GCTCTTGGTAAATTTGATGA+TGG | 0.492656 | 7_3:+74635575 | Msa1123680:CDS |
| TTACCCAACTGAATTGTCCT+AGG | 0.504543 | 7_3:-74635605 | None:intergenic |
| ATTTCCTAGGACAATTCAGT+TGG | 0.506498 | 7_3:+74635601 | Msa1123680:CDS |
| TTCCTATTAACCTTCAAGAC+AGG | 0.513215 | 7_3:+74635042 | Msa1123680:CDS |
| TCATAAACGAATGCAATTGT+GGG | 0.515423 | 7_3:-74636011 | None:intergenic |
| GATCTGTACTCTTCATTGAA+AGG | 0.526123 | 7_3:+74635419 | Msa1123680:CDS |
| CAGTGAAAATTGGGTTGCAA+TGG | 0.530254 | 7_3:+74636406 | Msa1123680:exon |
| TTTCCTAGGACAATTCAGTT+GGG | 0.539300 | 7_3:+74635602 | Msa1123680:CDS |
| TTCTCCAAGTAATCAAAGGC+AGG | 0.548201 | 7_3:-74635551 | None:intergenic |
| GGCAGCAGTCTACCTCTCAA+AGG | 0.554898 | 7_3:-74636432 | None:intergenic |
| GCAGCAGTCTACCTCTCAAA+GGG | 0.555531 | 7_3:-74636431 | None:intergenic |
| TTCCCATTGTGCTCCAACGA+TGG | 0.562767 | 7_3:-74635186 | None:intergenic |
| CATGATTGATGACCAATGCA+GGG | 0.569230 | 7_3:+74634996 | None:intergenic |
| GGAGATCCTATAAAACAAGC+TGG | 0.576421 | 7_3:+74635440 | Msa1123680:CDS |
| CTCACACTGGGAACTAGAGA+TGG | 0.581337 | 7_3:-74635264 | None:intergenic |
| GAAACTTGCAGCATGGATTG+AGG | 0.586391 | 7_3:+74635953 | Msa1123680:CDS |
| AGCATTCTCCAAGTAATCAA+AGG | 0.590018 | 7_3:-74635555 | None:intergenic |
| AGGTCATCAATCCGAACTTG+AGG | 0.592258 | 7_3:+74636049 | Msa1123680:CDS |
| TTGCAATGGCACCCTTTGAG+AGG | 0.592579 | 7_3:+74636420 | Msa1123680:three_prime_UTR |
| GAAAGTCTACCCAGAAAACA+AGG | 0.594976 | 7_3:+74635082 | Msa1123680:CDS |
| GTATGTATAGGTGCCATCGT+TGG | 0.598903 | 7_3:+74635173 | Msa1123680:intron |
| GTGCCATCGTTGGAGCACAA+TGG | 0.601381 | 7_3:+74635183 | Msa1123680:CDS |
| AGCATGATATAATAGAAGGA+AGG | 0.603963 | 7_3:+74635928 | Msa1123680:CDS |
| ATCGTTGGAGCACAATGGGA+AGG | 0.614660 | 7_3:+74635188 | Msa1123680:CDS |
| ACATAGATGTCAACTTTGAG+GGG | 0.620984 | 7_3:+74635241 | Msa1123680:CDS |
| GAAGGCCGAAACTTGCAGCA+TGG | 0.634072 | 7_3:+74635946 | Msa1123680:CDS |
| TATTTCACCATCCATCAACA+TGG | 0.644962 | 7_3:-74636655 | None:intergenic |
| ACATTATTTATACAATACAG+TGG | 0.670741 | 7_3:-74636609 | None:intergenic |
| TTGATGCTTATACACAGACA+AGG | 0.678414 | 7_3:+74636222 | Msa1123680:CDS |
| TGATGCTTATACACAGACAA+GGG | 0.702603 | 7_3:+74636223 | Msa1123680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATAATCGATTTTTTTT+GGG | - | chr7_3:74635308-74635327 | None:intergenic | 10.0% |
| !!! | TAATATAATCGATTTTTTTT+GGG | - | chr7_3:74635308-74635327 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTTCGTATGTAT+AGG | + | chr7_3:74635161-74635180 | Msa1123680:intron | 15.0% |
| !!! | AATATAATCGATTTTTTTTG+GGG | - | chr7_3:74635307-74635326 | None:intergenic | 15.0% |
| !!! | CTAATATAATCGATTTTTTT+TGG | - | chr7_3:74635309-74635328 | None:intergenic | 15.0% |
| !! | AAAAAAATCGATTATATTAG+TGG | + | chr7_3:74635309-74635328 | Msa1123680:intron | 15.0% |
| !!! | ATTTTATGATTTTGTTTTTC+AGG | + | chr7_3:74635337-74635356 | Msa1123680:intron | 15.0% |
| !! | TCTTATATATAAGTTGTTAT+TGG | + | chr7_3:74635831-74635850 | Msa1123680:intron | 15.0% |
| !! | AAAATATCAACAATTTCATT+TGG | - | chr7_3:74636254-74636273 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTTCGTATGTAT+AGG | + | chr7_3:74635161-74635180 | Msa1123680:intron | 15.0% |
| !!! | AATATAATCGATTTTTTTTG+GGG | - | chr7_3:74635307-74635326 | None:intergenic | 15.0% |
| !!! | CTAATATAATCGATTTTTTT+TGG | - | chr7_3:74635309-74635328 | None:intergenic | 15.0% |
| !! | AAAAAAATCGATTATATTAG+TGG | + | chr7_3:74635309-74635328 | Msa1123680:intron | 15.0% |
| !!! | ATTTTATGATTTTGTTTTTC+AGG | + | chr7_3:74635337-74635356 | Msa1123680:intron | 15.0% |
| !! | TCTTATATATAAGTTGTTAT+TGG | + | chr7_3:74635831-74635850 | Msa1123680:intron | 15.0% |
| !! | AAAATATCAACAATTTCATT+TGG | - | chr7_3:74636254-74636273 | None:intergenic | 15.0% |
| !! | GAAAAAAATAATGATCAACT+AGG | - | chr7_3:74635153-74635172 | None:intergenic | 20.0% |
| !!! | ATATAATCGATTTTTTTTGG+GGG | - | chr7_3:74635306-74635325 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATATTACTTGT+CGG | + | chr7_3:74635671-74635690 | Msa1123680:intron | 20.0% |
| !!! | ATTTTTAATAAAGCATGTGA+TGG | + | chr7_3:74635714-74635733 | Msa1123680:intron | 20.0% |
| !! | TATGAATTGATTACAAATCA+AGG | + | chr7_3:74636029-74636048 | Msa1123680:CDS | 20.0% |
| !! | AAACACTAATGATACTTTAT+TGG | - | chr7_3:74636456-74636475 | None:intergenic | 20.0% |
| !! | ACATTATTTATACAATACAG+TGG | - | chr7_3:74636612-74636631 | None:intergenic | 20.0% |
| !! | GAAAAAAATAATGATCAACT+AGG | - | chr7_3:74635153-74635172 | None:intergenic | 20.0% |
| !!! | ATATAATCGATTTTTTTTGG+GGG | - | chr7_3:74635306-74635325 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATATTACTTGT+CGG | + | chr7_3:74635671-74635690 | Msa1123680:intron | 20.0% |
| !!! | ATTTTTAATAAAGCATGTGA+TGG | + | chr7_3:74635714-74635733 | Msa1123680:intron | 20.0% |
| !! | TATGAATTGATTACAAATCA+AGG | + | chr7_3:74636029-74636048 | Msa1123680:CDS | 20.0% |
| !! | AAACACTAATGATACTTTAT+TGG | - | chr7_3:74636456-74636475 | None:intergenic | 20.0% |
| !! | ACATTATTTATACAATACAG+TGG | - | chr7_3:74636612-74636631 | None:intergenic | 20.0% |
| ! | ACTACAAGACAAAATCAAAT+TGG | + | chr7_3:74635019-74635038 | Msa1123680:CDS | 25.0% |
| !!! | GCTTTCAAGTTAATAAATAG+AGG | + | chr7_3:74635467-74635486 | Msa1123680:intron | 25.0% |
| !! | TGAAATTGGTAATTTGAATC+AGG | + | chr7_3:74635527-74635546 | Msa1123680:intron | 25.0% |
| ! | TAAGAGAAAAACTATAGTCA+TGG | - | chr7_3:74635816-74635835 | None:intergenic | 25.0% |
| ! | TCTTTCAACAAATGGAATAT+AGG | - | chr7_3:74635880-74635899 | None:intergenic | 25.0% |
| ! | ATATGGAATCTTTCAACAAA+TGG | - | chr7_3:74635888-74635907 | None:intergenic | 25.0% |
| ! | TTCAAGCATGATATAATAGA+AGG | + | chr7_3:74635924-74635943 | Msa1123680:CDS | 25.0% |
| ! | ATCAACAATTTCATTTGGAT+CGG | - | chr7_3:74636249-74636268 | None:intergenic | 25.0% |
| ! | AACATTGTGAGTTTAAAAAG+TGG | - | chr7_3:74636369-74636388 | None:intergenic | 25.0% |
| ! | ACTACAAGACAAAATCAAAT+TGG | + | chr7_3:74635019-74635038 | Msa1123680:CDS | 25.0% |
| !!! | GCTTTCAAGTTAATAAATAG+AGG | + | chr7_3:74635467-74635486 | Msa1123680:intron | 25.0% |
| !! | TGAAATTGGTAATTTGAATC+AGG | + | chr7_3:74635527-74635546 | Msa1123680:intron | 25.0% |
| ! | TAAGAGAAAAACTATAGTCA+TGG | - | chr7_3:74635816-74635835 | None:intergenic | 25.0% |
| ! | TCTTTCAACAAATGGAATAT+AGG | - | chr7_3:74635880-74635899 | None:intergenic | 25.0% |
| ! | ATATGGAATCTTTCAACAAA+TGG | - | chr7_3:74635888-74635907 | None:intergenic | 25.0% |
| ! | TTCAAGCATGATATAATAGA+AGG | + | chr7_3:74635924-74635943 | Msa1123680:CDS | 25.0% |
| ! | ATCAACAATTTCATTTGGAT+CGG | - | chr7_3:74636249-74636268 | None:intergenic | 25.0% |
| ! | AACATTGTGAGTTTAAAAAG+TGG | - | chr7_3:74636369-74636388 | None:intergenic | 25.0% |
| !!! | TTAAACACACCTTGTTTTCT+GGG | - | chr7_3:74635094-74635113 | None:intergenic | 30.0% |
| TTACATAGATGTCAACTTTG+AGG | + | chr7_3:74635239-74635258 | Msa1123680:CDS | 30.0% | |
| TACATAGATGTCAACTTTGA+GGG | + | chr7_3:74635240-74635259 | Msa1123680:CDS | 30.0% | |
| !!! | GCAAACTGAACTTTTGAAAT+TGG | + | chr7_3:74635513-74635532 | Msa1123680:intron | 30.0% |
| !!! | TTGCCATTTTTCTTTTCTGT+TGG | + | chr7_3:74635644-74635663 | Msa1123680:intron | 30.0% |
| CAACCAACAGAAAAGAAAAA+TGG | - | chr7_3:74635650-74635669 | None:intergenic | 30.0% | |
| !! | TGTTATTGGTTGTGTTGATT+AGG | + | chr7_3:74635845-74635864 | Msa1123680:intron | 30.0% |
| ! | ATTCCATATAGTCTTTTCTG+AGG | + | chr7_3:74635899-74635918 | Msa1123680:CDS | 30.0% |
| AGCATGATATAATAGAAGGA+AGG | + | chr7_3:74635928-74635947 | Msa1123680:CDS | 30.0% | |
| TCATAAACGAATGCAATTGT+GGG | - | chr7_3:74636014-74636033 | None:intergenic | 30.0% | |
| TTCATAAACGAATGCAATTG+TGG | - | chr7_3:74636015-74636034 | None:intergenic | 30.0% | |
| !! | TATTTTCAAGAAACGCTTTC+TGG | + | chr7_3:74636268-74636287 | Msa1123680:CDS | 30.0% |
| TAAAAAGTGGCGAATACAAT+AGG | - | chr7_3:74636356-74636375 | None:intergenic | 30.0% | |
| !!! | TTAAACACACCTTGTTTTCT+GGG | - | chr7_3:74635094-74635113 | None:intergenic | 30.0% |
| TTACATAGATGTCAACTTTG+AGG | + | chr7_3:74635239-74635258 | Msa1123680:CDS | 30.0% | |
| TACATAGATGTCAACTTTGA+GGG | + | chr7_3:74635240-74635259 | Msa1123680:CDS | 30.0% | |
| !!! | GCAAACTGAACTTTTGAAAT+TGG | + | chr7_3:74635513-74635532 | Msa1123680:intron | 30.0% |
| !!! | TTGCCATTTTTCTTTTCTGT+TGG | + | chr7_3:74635644-74635663 | Msa1123680:intron | 30.0% |
| CAACCAACAGAAAAGAAAAA+TGG | - | chr7_3:74635650-74635669 | None:intergenic | 30.0% | |
| !! | TGTTATTGGTTGTGTTGATT+AGG | + | chr7_3:74635845-74635864 | Msa1123680:intron | 30.0% |
| ! | ATTCCATATAGTCTTTTCTG+AGG | + | chr7_3:74635899-74635918 | Msa1123680:CDS | 30.0% |
| AGCATGATATAATAGAAGGA+AGG | + | chr7_3:74635928-74635947 | Msa1123680:CDS | 30.0% | |
| TCATAAACGAATGCAATTGT+GGG | - | chr7_3:74636014-74636033 | None:intergenic | 30.0% | |
| TTCATAAACGAATGCAATTG+TGG | - | chr7_3:74636015-74636034 | None:intergenic | 30.0% | |
| !! | TATTTTCAAGAAACGCTTTC+TGG | + | chr7_3:74636268-74636287 | Msa1123680:CDS | 30.0% |
| TAAAAAGTGGCGAATACAAT+AGG | - | chr7_3:74636356-74636375 | None:intergenic | 30.0% | |
| TTCCTATTAACCTTCAAGAC+AGG | + | chr7_3:74635042-74635061 | Msa1123680:CDS | 35.0% | |
| ACTTTCTCCTTATACCAAAC+AGG | - | chr7_3:74635068-74635087 | None:intergenic | 35.0% | |
| !!! | GTTAAACACACCTTGTTTTC+TGG | - | chr7_3:74635095-74635114 | None:intergenic | 35.0% |
| !! | TGTGTTTAACTTGCTCATAC+AGG | + | chr7_3:74635105-74635124 | Msa1123680:intron | 35.0% |
| !! | GTGTTTAACTTGCTCATACA+GGG | + | chr7_3:74635106-74635125 | Msa1123680:intron | 35.0% |
| ACATAGATGTCAACTTTGAG+GGG | + | chr7_3:74635241-74635260 | Msa1123680:CDS | 35.0% | |
| ! | CAATGAAGAGTACAGATCTT+TGG | - | chr7_3:74635417-74635436 | None:intergenic | 35.0% |
| GATCTGTACTCTTCATTGAA+AGG | + | chr7_3:74635419-74635438 | Msa1123680:CDS | 35.0% | |
| !!! | GCATTACCAGCTTGTTTTAT+AGG | - | chr7_3:74635449-74635468 | None:intergenic | 35.0% |
| AGCATTCTCCAAGTAATCAA+AGG | - | chr7_3:74635558-74635577 | None:intergenic | 35.0% | |
| GCTCTTGGTAAATTTGATGA+TGG | + | chr7_3:74635575-74635594 | Msa1123680:CDS | 35.0% | |
| !! | TTGATGATGGACAATTTCCT+AGG | + | chr7_3:74635588-74635607 | Msa1123680:CDS | 35.0% |
| ATTTCCTAGGACAATTCAGT+TGG | + | chr7_3:74635601-74635620 | Msa1123680:CDS | 35.0% | |
| TTTCCTAGGACAATTCAGTT+GGG | + | chr7_3:74635602-74635621 | Msa1123680:CDS | 35.0% | |
| !! | TATTGGTTGTGTTGATTAGG+TGG | + | chr7_3:74635848-74635867 | Msa1123680:intron | 35.0% |
| ACACCTCAGAAAAGACTATA+TGG | - | chr7_3:74635905-74635924 | None:intergenic | 35.0% | |
| ! | GGTTAAGTTTTCCTCAAGTT+CGG | - | chr7_3:74636063-74636082 | None:intergenic | 35.0% |
| GTGCATAATGTTTCTTTGAC+AGG | + | chr7_3:74636187-74636206 | Msa1123680:intron | 35.0% | |
| TTGATGCTTATACACAGACA+AGG | + | chr7_3:74636222-74636241 | Msa1123680:CDS | 35.0% | |
| TGATGCTTATACACAGACAA+GGG | + | chr7_3:74636223-74636242 | Msa1123680:CDS | 35.0% | |
| ! | ATGATGCTTTTCCATGTTGA+TGG | + | chr7_3:74636644-74636663 | Msa1123680:three_prime_UTR | 35.0% |
| TATTTCACCATCCATCAACA+TGG | - | chr7_3:74636658-74636677 | None:intergenic | 35.0% | |
| TTCCTATTAACCTTCAAGAC+AGG | + | chr7_3:74635042-74635061 | Msa1123680:CDS | 35.0% | |
| ACTTTCTCCTTATACCAAAC+AGG | - | chr7_3:74635068-74635087 | None:intergenic | 35.0% | |
| !!! | GTTAAACACACCTTGTTTTC+TGG | - | chr7_3:74635095-74635114 | None:intergenic | 35.0% |
| !! | TGTGTTTAACTTGCTCATAC+AGG | + | chr7_3:74635105-74635124 | Msa1123680:intron | 35.0% |
| !! | GTGTTTAACTTGCTCATACA+GGG | + | chr7_3:74635106-74635125 | Msa1123680:intron | 35.0% |
| ACATAGATGTCAACTTTGAG+GGG | + | chr7_3:74635241-74635260 | Msa1123680:CDS | 35.0% | |
| ! | CAATGAAGAGTACAGATCTT+TGG | - | chr7_3:74635417-74635436 | None:intergenic | 35.0% |
| GATCTGTACTCTTCATTGAA+AGG | + | chr7_3:74635419-74635438 | Msa1123680:CDS | 35.0% | |
| !!! | GCATTACCAGCTTGTTTTAT+AGG | - | chr7_3:74635449-74635468 | None:intergenic | 35.0% |
| AGCATTCTCCAAGTAATCAA+AGG | - | chr7_3:74635558-74635577 | None:intergenic | 35.0% | |
| GCTCTTGGTAAATTTGATGA+TGG | + | chr7_3:74635575-74635594 | Msa1123680:CDS | 35.0% | |
| !! | TTGATGATGGACAATTTCCT+AGG | + | chr7_3:74635588-74635607 | Msa1123680:CDS | 35.0% |
| ATTTCCTAGGACAATTCAGT+TGG | + | chr7_3:74635601-74635620 | Msa1123680:CDS | 35.0% | |
| TTTCCTAGGACAATTCAGTT+GGG | + | chr7_3:74635602-74635621 | Msa1123680:CDS | 35.0% | |
| !! | TATTGGTTGTGTTGATTAGG+TGG | + | chr7_3:74635848-74635867 | Msa1123680:intron | 35.0% |
| ACACCTCAGAAAAGACTATA+TGG | - | chr7_3:74635905-74635924 | None:intergenic | 35.0% | |
| ! | GGTTAAGTTTTCCTCAAGTT+CGG | - | chr7_3:74636063-74636082 | None:intergenic | 35.0% |
| GTGCATAATGTTTCTTTGAC+AGG | + | chr7_3:74636187-74636206 | Msa1123680:intron | 35.0% | |
| TTGATGCTTATACACAGACA+AGG | + | chr7_3:74636222-74636241 | Msa1123680:CDS | 35.0% | |
| TGATGCTTATACACAGACAA+GGG | + | chr7_3:74636223-74636242 | Msa1123680:CDS | 35.0% | |
| ! | ATGATGCTTTTCCATGTTGA+TGG | + | chr7_3:74636644-74636663 | Msa1123680:three_prime_UTR | 35.0% |
| TATTTCACCATCCATCAACA+TGG | - | chr7_3:74636658-74636677 | None:intergenic | 35.0% | |
| GAAAGTCTACCCAGAAAACA+AGG | + | chr7_3:74635082-74635101 | Msa1123680:CDS | 40.0% | |
| GATCCTGCAAAGAAAGAGTT+TGG | + | chr7_3:74635359-74635378 | Msa1123680:CDS | 40.0% | |
| TCACCAAACTCTTTCTTTGC+AGG | - | chr7_3:74635365-74635384 | None:intergenic | 40.0% | |
| GGAGATCCTATAAAACAAGC+TGG | + | chr7_3:74635440-74635459 | Msa1123680:CDS | 40.0% | |
| TTCTCCAAGTAATCAAAGGC+AGG | - | chr7_3:74635554-74635573 | None:intergenic | 40.0% | |
| GATTACTTGGAGAATGCTCT+TGG | + | chr7_3:74635560-74635579 | Msa1123680:CDS | 40.0% | |
| TTACCCAACTGAATTGTCCT+AGG | - | chr7_3:74635608-74635627 | None:intergenic | 40.0% | |
| TAAAGCATGTGATGGTCTGA+TGG | + | chr7_3:74635722-74635741 | Msa1123680:intron | 40.0% | |
| TCAATCCATGCTGCAAGTTT+CGG | - | chr7_3:74635954-74635973 | None:intergenic | 40.0% | |
| AACTTAACCTGTTCCGCAAA+TGG | + | chr7_3:74636074-74636093 | Msa1123680:CDS | 40.0% | |
| ATCTCGTGTTAACGAGACAT+CGG | - | chr7_3:74636161-74636180 | None:intergenic | 40.0% | |
| ! | CTCACAATGTTCTAACTTGC+AGG | + | chr7_3:74636378-74636397 | Msa1123680:intron | 40.0% |
| CAGGCTCAACAGTGAAAATT+GGG | + | chr7_3:74636397-74636416 | Msa1123680:intron | 40.0% | |
| ! | CAGTGAAAATTGGGTTGCAA+TGG | + | chr7_3:74636406-74636425 | Msa1123680:exon | 40.0% |
| !! | TGCTTTTCCATGTTGATGGA+TGG | + | chr7_3:74636648-74636667 | Msa1123680:three_prime_UTR | 40.0% |
| GAAAGTCTACCCAGAAAACA+AGG | + | chr7_3:74635082-74635101 | Msa1123680:CDS | 40.0% | |
| GATCCTGCAAAGAAAGAGTT+TGG | + | chr7_3:74635359-74635378 | Msa1123680:CDS | 40.0% | |
| TCACCAAACTCTTTCTTTGC+AGG | - | chr7_3:74635365-74635384 | None:intergenic | 40.0% | |
| GGAGATCCTATAAAACAAGC+TGG | + | chr7_3:74635440-74635459 | Msa1123680:CDS | 40.0% | |
| TTCTCCAAGTAATCAAAGGC+AGG | - | chr7_3:74635554-74635573 | None:intergenic | 40.0% | |
| GATTACTTGGAGAATGCTCT+TGG | + | chr7_3:74635560-74635579 | Msa1123680:CDS | 40.0% | |
| TTACCCAACTGAATTGTCCT+AGG | - | chr7_3:74635608-74635627 | None:intergenic | 40.0% | |
| TAAAGCATGTGATGGTCTGA+TGG | + | chr7_3:74635722-74635741 | Msa1123680:intron | 40.0% | |
| TCAATCCATGCTGCAAGTTT+CGG | - | chr7_3:74635954-74635973 | None:intergenic | 40.0% | |
| AACTTAACCTGTTCCGCAAA+TGG | + | chr7_3:74636074-74636093 | Msa1123680:CDS | 40.0% | |
| ATCTCGTGTTAACGAGACAT+CGG | - | chr7_3:74636161-74636180 | None:intergenic | 40.0% | |
| ! | CTCACAATGTTCTAACTTGC+AGG | + | chr7_3:74636378-74636397 | Msa1123680:intron | 40.0% |
| CAGGCTCAACAGTGAAAATT+GGG | + | chr7_3:74636397-74636416 | Msa1123680:intron | 40.0% | |
| ! | CAGTGAAAATTGGGTTGCAA+TGG | + | chr7_3:74636406-74636425 | Msa1123680:exon | 40.0% |
| !! | TGCTTTTCCATGTTGATGGA+TGG | + | chr7_3:74636648-74636667 | Msa1123680:three_prime_UTR | 40.0% |
| GGCCTGTCTTGAAGGTTAAT+AGG | - | chr7_3:74635047-74635066 | None:intergenic | 45.0% | |
| AGACAGGCCTGTTTGGTATA+AGG | + | chr7_3:74635058-74635077 | Msa1123680:CDS | 45.0% | |
| ! | GTATGTATAGGTGCCATCGT+TGG | + | chr7_3:74635173-74635192 | Msa1123680:intron | 45.0% |
| !!! | TCGATTTTTTTTGGGGGTGC+AGG | - | chr7_3:74635300-74635319 | None:intergenic | 45.0% |
| AGGTCCTGCCTTTGATTACT+TGG | + | chr7_3:74635547-74635566 | Msa1123680:intron | 45.0% | |
| ! | GAAACTTGCAGCATGGATTG+AGG | + | chr7_3:74635953-74635972 | Msa1123680:CDS | 45.0% |
| AGGTCATCAATCCGAACTTG+AGG | + | chr7_3:74636049-74636068 | Msa1123680:CDS | 45.0% | |
| ACCTGTTCCGCAAATGGAAA+CGG | + | chr7_3:74636080-74636099 | Msa1123680:CDS | 45.0% | |
| TCCGCAAATGGAAACGGAAA+TGG | + | chr7_3:74636086-74636105 | Msa1123680:CDS | 45.0% | |
| CCCATTTCCGTTTCCATTTG+CGG | - | chr7_3:74636090-74636109 | None:intergenic | 45.0% | |
| CCGCAAATGGAAACGGAAAT+GGG | + | chr7_3:74636087-74636106 | Msa1123680:CDS | 45.0% | |
| ! | AGCTTGAGGACCATTTTCTG+TGG | - | chr7_3:74636113-74636132 | None:intergenic | 45.0% |
| AGAACTCTTGTCGAAGCTTG+AGG | - | chr7_3:74636127-74636146 | None:intergenic | 45.0% | |
| TAACGAGACATCGGAGGTAA+TGG | - | chr7_3:74636152-74636171 | None:intergenic | 45.0% | |
| GCAGGCTCAACAGTGAAAAT+TGG | + | chr7_3:74636396-74636415 | Msa1123680:intron | 45.0% | |
| GGCCTGTCTTGAAGGTTAAT+AGG | - | chr7_3:74635047-74635066 | None:intergenic | 45.0% | |
| AGACAGGCCTGTTTGGTATA+AGG | + | chr7_3:74635058-74635077 | Msa1123680:CDS | 45.0% | |
| ! | GTATGTATAGGTGCCATCGT+TGG | + | chr7_3:74635173-74635192 | Msa1123680:intron | 45.0% |
| !!! | TCGATTTTTTTTGGGGGTGC+AGG | - | chr7_3:74635300-74635319 | None:intergenic | 45.0% |
| AGGTCCTGCCTTTGATTACT+TGG | + | chr7_3:74635547-74635566 | Msa1123680:intron | 45.0% | |
| ! | GAAACTTGCAGCATGGATTG+AGG | + | chr7_3:74635953-74635972 | Msa1123680:CDS | 45.0% |
| AGGTCATCAATCCGAACTTG+AGG | + | chr7_3:74636049-74636068 | Msa1123680:CDS | 45.0% | |
| ACCTGTTCCGCAAATGGAAA+CGG | + | chr7_3:74636080-74636099 | Msa1123680:CDS | 45.0% | |
| TCCGCAAATGGAAACGGAAA+TGG | + | chr7_3:74636086-74636105 | Msa1123680:CDS | 45.0% | |
| CCCATTTCCGTTTCCATTTG+CGG | - | chr7_3:74636090-74636109 | None:intergenic | 45.0% | |
| CCGCAAATGGAAACGGAAAT+GGG | + | chr7_3:74636087-74636106 | Msa1123680:CDS | 45.0% | |
| ! | AGCTTGAGGACCATTTTCTG+TGG | - | chr7_3:74636113-74636132 | None:intergenic | 45.0% |
| AGAACTCTTGTCGAAGCTTG+AGG | - | chr7_3:74636127-74636146 | None:intergenic | 45.0% | |
| TAACGAGACATCGGAGGTAA+TGG | - | chr7_3:74636152-74636171 | None:intergenic | 45.0% | |
| GCAGGCTCAACAGTGAAAAT+TGG | + | chr7_3:74636396-74636415 | Msa1123680:intron | 45.0% | |
| ACCTTCAAGACAGGCCTGTT+TGG | + | chr7_3:74635051-74635070 | Msa1123680:CDS | 50.0% | |
| ACCAAACAGGCCTGTCTTGA+AGG | - | chr7_3:74635055-74635074 | None:intergenic | 50.0% | |
| TGCCATCGTTGGAGCACAAT+GGG | + | chr7_3:74635184-74635203 | Msa1123680:CDS | 50.0% | |
| TTCCCATTGTGCTCCAACGA+TGG | - | chr7_3:74635189-74635208 | None:intergenic | 50.0% | |
| ATCGTTGGAGCACAATGGGA+AGG | + | chr7_3:74635188-74635207 | Msa1123680:CDS | 50.0% | |
| GAGCACAATGGGAAGGTCTT+GGG | + | chr7_3:74635195-74635214 | Msa1123680:CDS | 50.0% | |
| CTCACACTGGGAACTAGAGA+TGG | - | chr7_3:74635267-74635286 | None:intergenic | 50.0% | |
| !! | GGAGAGTGCTTTCTCACACT+GGG | - | chr7_3:74635279-74635298 | None:intergenic | 50.0% |
| !! | AGGAGAGTGCTTTCTCACAC+TGG | - | chr7_3:74635280-74635299 | None:intergenic | 50.0% |
| ! | TGTGATGGTCTGATGGATCG+TGG | + | chr7_3:74635729-74635748 | Msa1123680:intron | 50.0% |
| TCCGTTTCCATTTGCGGAAC+AGG | - | chr7_3:74636084-74636103 | None:intergenic | 50.0% | |
| CGGAAATGGGCCACAGAAAA+TGG | + | chr7_3:74636100-74636119 | Msa1123680:CDS | 50.0% | |
| TCGTGTTAACGAGACATCGG+AGG | - | chr7_3:74636158-74636177 | None:intergenic | 50.0% | |
| TTGCAATGGCACCCTTTGAG+AGG | + | chr7_3:74636420-74636439 | Msa1123680:three_prime_UTR | 50.0% | |
| GCAGCAGTCTACCTCTCAAA+GGG | - | chr7_3:74636434-74636453 | None:intergenic | 50.0% | |
| ACCTTCAAGACAGGCCTGTT+TGG | + | chr7_3:74635051-74635070 | Msa1123680:CDS | 50.0% | |
| ACCAAACAGGCCTGTCTTGA+AGG | - | chr7_3:74635055-74635074 | None:intergenic | 50.0% | |
| TGCCATCGTTGGAGCACAAT+GGG | + | chr7_3:74635184-74635203 | Msa1123680:CDS | 50.0% | |
| TTCCCATTGTGCTCCAACGA+TGG | - | chr7_3:74635189-74635208 | None:intergenic | 50.0% | |
| ATCGTTGGAGCACAATGGGA+AGG | + | chr7_3:74635188-74635207 | Msa1123680:CDS | 50.0% | |
| GAGCACAATGGGAAGGTCTT+GGG | + | chr7_3:74635195-74635214 | Msa1123680:CDS | 50.0% | |
| CTCACACTGGGAACTAGAGA+TGG | - | chr7_3:74635267-74635286 | None:intergenic | 50.0% | |
| !! | GGAGAGTGCTTTCTCACACT+GGG | - | chr7_3:74635279-74635298 | None:intergenic | 50.0% |
| !! | AGGAGAGTGCTTTCTCACAC+TGG | - | chr7_3:74635280-74635299 | None:intergenic | 50.0% |
| ! | TGTGATGGTCTGATGGATCG+TGG | + | chr7_3:74635729-74635748 | Msa1123680:intron | 50.0% |
| TCCGTTTCCATTTGCGGAAC+AGG | - | chr7_3:74636084-74636103 | None:intergenic | 50.0% | |
| CGGAAATGGGCCACAGAAAA+TGG | + | chr7_3:74636100-74636119 | Msa1123680:CDS | 50.0% | |
| TCGTGTTAACGAGACATCGG+AGG | - | chr7_3:74636158-74636177 | None:intergenic | 50.0% | |
| TTGCAATGGCACCCTTTGAG+AGG | + | chr7_3:74636420-74636439 | Msa1123680:three_prime_UTR | 50.0% | |
| GCAGCAGTCTACCTCTCAAA+GGG | - | chr7_3:74636434-74636453 | None:intergenic | 50.0% | |
| GTGCCATCGTTGGAGCACAA+TGG | + | chr7_3:74635183-74635202 | Msa1123680:CDS | 55.0% | |
| GGAGCACAATGGGAAGGTCT+TGG | + | chr7_3:74635194-74635213 | Msa1123680:CDS | 55.0% | |
| GAAGGCCGAAACTTGCAGCA+TGG | + | chr7_3:74635946-74635965 | Msa1123680:CDS | 55.0% | |
| GGCAGCAGTCTACCTCTCAA+AGG | - | chr7_3:74636435-74636454 | None:intergenic | 55.0% | |
| GTGCCATCGTTGGAGCACAA+TGG | + | chr7_3:74635183-74635202 | Msa1123680:CDS | 55.0% | |
| GGAGCACAATGGGAAGGTCT+TGG | + | chr7_3:74635194-74635213 | Msa1123680:CDS | 55.0% | |
| GAAGGCCGAAACTTGCAGCA+TGG | + | chr7_3:74635946-74635965 | Msa1123680:CDS | 55.0% | |
| GGCAGCAGTCTACCTCTCAA+AGG | - | chr7_3:74636435-74636454 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74635011 | 74636690 | 74635011 | ID=Msa1123680;Name=Msa1123680 |
| chr7_3 | mRNA | 74635011 | 74636690 | 74635011 | ID=Msa1123680-mRNA-1;Parent=Msa1123680;Name=Msa1123680-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.16|0.14|1|1|1|7|279|251 |
| chr7_3 | exon | 74635011 | 74635103 | 74635011 | ID=Msa1123680-mRNA-1:exon:19855;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74635183 | 74635281 | 74635183 | ID=Msa1123680-mRNA-1:exon:19856;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74635359 | 74635461 | 74635359 | ID=Msa1123680-mRNA-1:exon:19857;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74635549 | 74635661 | 74635549 | ID=Msa1123680-mRNA-1:exon:19858;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74635867 | 74636121 | 74635867 | ID=Msa1123680-mRNA-1:exon:19859;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74636209 | 74636289 | 74636209 | ID=Msa1123680-mRNA-1:exon:19860;Parent=Msa1123680-mRNA-1 |
| chr7_3 | exon | 74636400 | 74636690 | 74636400 | ID=Msa1123680-mRNA-1:exon:19861;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74635011 | 74635103 | 74635011 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74635183 | 74635281 | 74635183 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74635359 | 74635461 | 74635359 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74635549 | 74635661 | 74635549 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74635867 | 74636121 | 74635867 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74636209 | 74636289 | 74636209 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | CDS | 74636400 | 74636411 | 74636400 | ID=Msa1123680-mRNA-1:cds;Parent=Msa1123680-mRNA-1 |
| chr7_3 | three_prime_UTR | 74636412 | 74636690 | 74636412 | ID=Msa1123680-mRNA-1:three_prime_utr;Parent=Msa1123680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
