Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169820 | XP_003625544.2 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 3.86e-108 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169820 | sp|Q9LZ06|GSTL3_ARATH | 50.607 | 247 | 61 | 3 | 2 | 248 | 50 | 235 | 3.99e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169820 | G7L0P7 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 1.84e-108 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1169820 | 0.803294 | 3.733574e-49 | -8.615850e-47 |
| Msa0437110 | Msa1169820 | 0.955782 | 1.368213e-113 | -8.615850e-47 |
| Msa0440520 | Msa1169820 | 0.806876 | 6.648997e-50 | -8.615850e-47 |
| Msa0999120 | Msa1169820 | 0.804515 | 2.081553e-49 | -8.615850e-47 |
| Msa1078370 | Msa1169820 | 0.803949 | 2.730208e-49 | -8.615850e-47 |
| Msa0293650 | Msa1169820 | 0.806620 | 7.528609e-50 | -8.615850e-47 |
| Msa0319170 | Msa1169820 | 0.801204 | 1.005611e-48 | -8.615850e-47 |
| Msa0339620 | Msa1169820 | 0.806457 | 8.149382e-50 | -8.615850e-47 |
| Msa0340470 | Msa1169820 | 0.804419 | 2.180427e-49 | -8.615850e-47 |
| Msa1123680 | Msa1169820 | 0.961551 | 7.810814e-120 | -8.615850e-47 |
| Msa1169820 | Msa1174040 | 0.805782 | 1.130661e-49 | -8.615850e-47 |
| Msa1169820 | Msa1277660 | 0.801911 | 7.201346e-49 | -8.615850e-47 |
| Msa1169820 | Msa1284680 | 0.812903 | 3.354265e-51 | -8.615850e-47 |
| Msa0927380 | Msa1169820 | 0.807956 | 3.922522e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169820 | MtrunA17_Chr7g0263221 | 70.400 | 250 | 13 | 3 | 2 | 251 | 48 | 236 | 3.55e-112 | 322 |
| Msa1169820 | MtrunA17_Chr1g0181861 | 58.800 | 250 | 42 | 3 | 2 | 251 | 49 | 237 | 4.05e-94 | 276 |
| Msa1169820 | MtrunA17_Chr1g0213361 | 45.565 | 248 | 73 | 4 | 2 | 249 | 130 | 315 | 1.07e-61 | 196 |
| Msa1169820 | MtrunA17_Chr1g0181851 | 46.559 | 247 | 38 | 4 | 2 | 248 | 45 | 197 | 1.26e-59 | 188 |
| Msa1169820 | MtrunA17_Chr1g0181841 | 77.778 | 72 | 16 | 0 | 2 | 73 | 70 | 141 | 2.76e-35 | 123 |
| Msa1169820 | MtrunA17_Chr3g0107731 | 30.055 | 183 | 101 | 7 | 32 | 204 | 59 | 224 | 1.47e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169820 | AT5G02790.1 | 50.607 | 247 | 61 | 3 | 2 | 248 | 50 | 235 | 4.05e-77 | 233 |
| Msa1169820 | AT5G02780.1 | 47.154 | 246 | 68 | 4 | 1 | 245 | 51 | 235 | 1.85e-68 | 211 |
| Msa1169820 | AT5G02780.3 | 47.154 | 246 | 68 | 4 | 1 | 245 | 51 | 235 | 1.85e-68 | 211 |
| Msa1169820 | AT5G02780.2 | 47.154 | 246 | 66 | 5 | 1 | 245 | 51 | 233 | 2.01e-66 | 206 |
| Msa1169820 | AT3G55040.1 | 43.373 | 249 | 80 | 3 | 2 | 250 | 102 | 289 | 1.73e-62 | 198 |
Find 69 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACTAATGATACTTTAT+TGG | 0.193930 | 7_4:-62907754 | None:intergenic |
| GCAGGCTCAACAGTGAAAAT+TGG | 0.195050 | 7_4:+62907697 | Msa1169820:intron |
| GGTGAAATATCTATAATAAT+TGG | 0.205562 | 7_4:+62907970 | Msa1169820:three_prime_UTR |
| AGACAGGCCTGTTTGGTATA+AGG | 0.282787 | 7_4:+62906359 | Msa1169820:CDS |
| TCACCAAACTCTTTCTTTGC+AGG | 0.295908 | 7_4:-62906663 | None:intergenic |
| TCCGTTTCCATTTGCGGAAC+AGG | 0.303576 | 7_4:-62907382 | None:intergenic |
| CCCATTTCCGTTTCCATTTG+CGG | 0.305037 | 7_4:-62907388 | None:intergenic |
| CAATGAAGAGTACAGATCTT+TGG | 0.308227 | 7_4:-62906715 | None:intergenic |
| CGGAAATGGGCCACAGAAAA+TGG | 0.312516 | 7_4:+62907401 | Msa1169820:CDS |
| AAAATATCAACAATTTCATT+TGG | 0.321951 | 7_4:-62907552 | None:intergenic |
| ACTACAAGACAAAATCAAAT+TGG | 0.371760 | 7_4:+62906320 | Msa1169820:CDS |
| AGGTCCTGCCTTTGATTACT+TGG | 0.371880 | 7_4:+62906848 | Msa1169820:intron |
| ACACCTCAGAAAAGACTATA+TGG | 0.374447 | 7_4:-62907203 | None:intergenic |
| TCAATCCATGCTGCAAGTTT+CGG | 0.375231 | 7_4:-62907252 | None:intergenic |
| TCCGCAAATGGAAACGGAAA+TGG | 0.375924 | 7_4:+62907387 | Msa1169820:CDS |
| TCTTTCAACAAATGGAATAT+AGG | 0.379083 | 7_4:-62907178 | None:intergenic |
| ACCTTCAAGACAGGCCTGTT+TGG | 0.380904 | 7_4:+62906352 | Msa1169820:CDS |
| GGCCTGTCTTGAAGGTTAAT+AGG | 0.408791 | 7_4:-62906345 | None:intergenic |
| ATATGGAATCTTTCAACAAA+TGG | 0.410892 | 7_4:-62907186 | None:intergenic |
| GTGAAATATCTATAATAATT+GGG | 0.411290 | 7_4:+62907971 | Msa1169820:three_prime_UTR |
| ACCAAACAGGCCTGTCTTGA+AGG | 0.413697 | 7_4:-62906353 | None:intergenic |
| AACTTAACCTGTTCCGCAAA+TGG | 0.414010 | 7_4:+62907375 | Msa1169820:CDS |
| TATGAATTGATTACAAATCA+AGG | 0.418475 | 7_4:+62907330 | Msa1169820:CDS |
| CAGGCTCAACAGTGAAAATT+GGG | 0.419928 | 7_4:+62907698 | Msa1169820:intron |
| TTCAAGCATGATATAATAGA+AGG | 0.420899 | 7_4:+62907225 | Msa1169820:CDS |
| GATCCTGCAAAGAAAGAGTT+TGG | 0.421571 | 7_4:+62906660 | Msa1169820:CDS |
| GGAGCACAATGGGAAGGTCT+TGG | 0.435080 | 7_4:+62906495 | Msa1169820:CDS |
| ACTTTCTCCTTATACCAAAC+AGG | 0.438140 | 7_4:-62906366 | None:intergenic |
| ATCAACAATTTCATTTGGAT+CGG | 0.455372 | 7_4:-62907547 | None:intergenic |
| TTCATAAACGAATGCAATTG+TGG | 0.455775 | 7_4:-62907313 | None:intergenic |
| GATTACTTGGAGAATGCTCT+TGG | 0.461042 | 7_4:+62906861 | Msa1169820:CDS |
| GAGCACAATGGGAAGGTCTT+GGG | 0.461051 | 7_4:+62906496 | Msa1169820:CDS |
| TGCCATCGTTGGAGCACAAT+GGG | 0.465276 | 7_4:+62906485 | Msa1169820:CDS |
| TACATAGATGTCAACTTTGA+GGG | 0.472144 | 7_4:+62906541 | Msa1169820:CDS |
| TTGATGATGGACAATTTCCT+AGG | 0.478787 | 7_4:+62906889 | Msa1169820:CDS |
| TTACATAGATGTCAACTTTG+AGG | 0.479491 | 7_4:+62906540 | Msa1169820:CDS |
| ACCTGTTCCGCAAATGGAAA+CGG | 0.480344 | 7_4:+62907381 | Msa1169820:CDS |
| CCGCAAATGGAAACGGAAAT+GGG | 0.488839 | 7_4:+62907388 | Msa1169820:CDS |
| TTGTCTTGTAGTCCCTGCAT+TGG | 0.490449 | 7_4:-62906309 | None:intergenic |
| GCTCTTGGTAAATTTGATGA+TGG | 0.492656 | 7_4:+62906876 | Msa1169820:CDS |
| TTACCCAACTGAATTGTCCT+AGG | 0.504543 | 7_4:-62906906 | None:intergenic |
| ATTTCCTAGGACAATTCAGT+TGG | 0.506498 | 7_4:+62906902 | Msa1169820:CDS |
| TTCCTATTAACCTTCAAGAC+AGG | 0.513215 | 7_4:+62906343 | Msa1169820:CDS |
| TCATAAACGAATGCAATTGT+GGG | 0.515423 | 7_4:-62907312 | None:intergenic |
| GATCTGTACTCTTCATTGAA+AGG | 0.526123 | 7_4:+62906720 | Msa1169820:CDS |
| CAGTGAAAATTGGGTTGCAA+TGG | 0.530254 | 7_4:+62907707 | Msa1169820:exon |
| TTTCCTAGGACAATTCAGTT+GGG | 0.539300 | 7_4:+62906903 | Msa1169820:CDS |
| TTCTCCAAGTAATCAAAGGC+AGG | 0.548201 | 7_4:-62906852 | None:intergenic |
| GGCAGCAGTCTACCTCTCAA+AGG | 0.554898 | 7_4:-62907733 | None:intergenic |
| GCAGCAGTCTACCTCTCAAA+GGG | 0.555531 | 7_4:-62907732 | None:intergenic |
| TTCCCATTGTGCTCCAACGA+TGG | 0.562767 | 7_4:-62906487 | None:intergenic |
| CATGATTGATGACCAATGCA+GGG | 0.569230 | 7_4:+62906297 | None:intergenic |
| GGAGATCCTATAAAACAAGC+TGG | 0.576421 | 7_4:+62906741 | Msa1169820:CDS |
| CTCACACTGGGAACTAGAGA+TGG | 0.581337 | 7_4:-62906565 | None:intergenic |
| GAAACTTGCAGCATGGATTG+AGG | 0.586391 | 7_4:+62907254 | Msa1169820:CDS |
| AGCATTCTCCAAGTAATCAA+AGG | 0.590018 | 7_4:-62906856 | None:intergenic |
| AGGTCATCAATCCGAACTTG+AGG | 0.592258 | 7_4:+62907350 | Msa1169820:CDS |
| TTGCAATGGCACCCTTTGAG+AGG | 0.592579 | 7_4:+62907721 | Msa1169820:three_prime_UTR |
| GAAAGTCTACCCAGAAAACA+AGG | 0.594976 | 7_4:+62906383 | Msa1169820:CDS |
| GTATGTATAGGTGCCATCGT+TGG | 0.598903 | 7_4:+62906474 | Msa1169820:intron |
| GTGCCATCGTTGGAGCACAA+TGG | 0.601381 | 7_4:+62906484 | Msa1169820:CDS |
| AGCATGATATAATAGAAGGA+AGG | 0.603963 | 7_4:+62907229 | Msa1169820:CDS |
| ATCGTTGGAGCACAATGGGA+AGG | 0.614660 | 7_4:+62906489 | Msa1169820:CDS |
| ACATAGATGTCAACTTTGAG+GGG | 0.620984 | 7_4:+62906542 | Msa1169820:CDS |
| GAAGGCCGAAACTTGCAGCA+TGG | 0.634072 | 7_4:+62907247 | Msa1169820:CDS |
| TATTTCACCATCCATCAACA+TGG | 0.644962 | 7_4:-62907956 | None:intergenic |
| ACATTATTTATACAATACAG+TGG | 0.670741 | 7_4:-62907910 | None:intergenic |
| TTGATGCTTATACACAGACA+AGG | 0.678414 | 7_4:+62907523 | Msa1169820:CDS |
| TGATGCTTATACACAGACAA+GGG | 0.702603 | 7_4:+62907524 | Msa1169820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATAATCGATTTTTTTT+GGG | - | chr7_4:62906609-62906628 | None:intergenic | 10.0% |
| !!! | TAATATAATCGATTTTTTTT+GGG | - | chr7_4:62906609-62906628 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTTCGTATGTAT+AGG | + | chr7_4:62906462-62906481 | Msa1169820:intron | 15.0% |
| !!! | AATATAATCGATTTTTTTTG+GGG | - | chr7_4:62906608-62906627 | None:intergenic | 15.0% |
| !!! | CTAATATAATCGATTTTTTT+TGG | - | chr7_4:62906610-62906629 | None:intergenic | 15.0% |
| !! | AAAAAAATCGATTATATTAG+TGG | + | chr7_4:62906610-62906629 | Msa1169820:intron | 15.0% |
| !!! | ATTTTATGATTTTGTTTTTC+AGG | + | chr7_4:62906638-62906657 | Msa1169820:intron | 15.0% |
| !! | TCTTATATATAAGTTGTTAT+TGG | + | chr7_4:62907132-62907151 | Msa1169820:intron | 15.0% |
| !! | AAAATATCAACAATTTCATT+TGG | - | chr7_4:62907555-62907574 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTTCGTATGTAT+AGG | + | chr7_4:62906462-62906481 | Msa1169820:intron | 15.0% |
| !!! | AATATAATCGATTTTTTTTG+GGG | - | chr7_4:62906608-62906627 | None:intergenic | 15.0% |
| !!! | CTAATATAATCGATTTTTTT+TGG | - | chr7_4:62906610-62906629 | None:intergenic | 15.0% |
| !! | AAAAAAATCGATTATATTAG+TGG | + | chr7_4:62906610-62906629 | Msa1169820:intron | 15.0% |
| !!! | ATTTTATGATTTTGTTTTTC+AGG | + | chr7_4:62906638-62906657 | Msa1169820:intron | 15.0% |
| !! | TCTTATATATAAGTTGTTAT+TGG | + | chr7_4:62907132-62907151 | Msa1169820:intron | 15.0% |
| !! | AAAATATCAACAATTTCATT+TGG | - | chr7_4:62907555-62907574 | None:intergenic | 15.0% |
| !! | GAAAAAAATAATGATCAACT+AGG | - | chr7_4:62906454-62906473 | None:intergenic | 20.0% |
| !!! | ATATAATCGATTTTTTTTGG+GGG | - | chr7_4:62906607-62906626 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATATTACTTGT+CGG | + | chr7_4:62906972-62906991 | Msa1169820:intron | 20.0% |
| !!! | ATTTTTAATAAAGCATGTGA+TGG | + | chr7_4:62907015-62907034 | Msa1169820:intron | 20.0% |
| !! | TATGAATTGATTACAAATCA+AGG | + | chr7_4:62907330-62907349 | Msa1169820:CDS | 20.0% |
| !! | AAACACTAATGATACTTTAT+TGG | - | chr7_4:62907757-62907776 | None:intergenic | 20.0% |
| !! | ACATTATTTATACAATACAG+TGG | - | chr7_4:62907913-62907932 | None:intergenic | 20.0% |
| !! | GAAAAAAATAATGATCAACT+AGG | - | chr7_4:62906454-62906473 | None:intergenic | 20.0% |
| !!! | ATATAATCGATTTTTTTTGG+GGG | - | chr7_4:62906607-62906626 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCATATTACTTGT+CGG | + | chr7_4:62906972-62906991 | Msa1169820:intron | 20.0% |
| !!! | ATTTTTAATAAAGCATGTGA+TGG | + | chr7_4:62907015-62907034 | Msa1169820:intron | 20.0% |
| !! | TATGAATTGATTACAAATCA+AGG | + | chr7_4:62907330-62907349 | Msa1169820:CDS | 20.0% |
| !! | AAACACTAATGATACTTTAT+TGG | - | chr7_4:62907757-62907776 | None:intergenic | 20.0% |
| !! | ACATTATTTATACAATACAG+TGG | - | chr7_4:62907913-62907932 | None:intergenic | 20.0% |
| ! | ACTACAAGACAAAATCAAAT+TGG | + | chr7_4:62906320-62906339 | Msa1169820:CDS | 25.0% |
| !!! | GCTTTCAAGTTAATAAATAG+AGG | + | chr7_4:62906768-62906787 | Msa1169820:intron | 25.0% |
| !! | TGAAATTGGTAATTTGAATC+AGG | + | chr7_4:62906828-62906847 | Msa1169820:intron | 25.0% |
| ! | TAAGAGAAAAACTATAGTCA+TGG | - | chr7_4:62907117-62907136 | None:intergenic | 25.0% |
| ! | TCTTTCAACAAATGGAATAT+AGG | - | chr7_4:62907181-62907200 | None:intergenic | 25.0% |
| ! | ATATGGAATCTTTCAACAAA+TGG | - | chr7_4:62907189-62907208 | None:intergenic | 25.0% |
| ! | TTCAAGCATGATATAATAGA+AGG | + | chr7_4:62907225-62907244 | Msa1169820:CDS | 25.0% |
| ! | ATCAACAATTTCATTTGGAT+CGG | - | chr7_4:62907550-62907569 | None:intergenic | 25.0% |
| ! | AACATTGTGAGTTTAAAAAG+TGG | - | chr7_4:62907670-62907689 | None:intergenic | 25.0% |
| ! | ACTACAAGACAAAATCAAAT+TGG | + | chr7_4:62906320-62906339 | Msa1169820:CDS | 25.0% |
| !!! | GCTTTCAAGTTAATAAATAG+AGG | + | chr7_4:62906768-62906787 | Msa1169820:intron | 25.0% |
| !! | TGAAATTGGTAATTTGAATC+AGG | + | chr7_4:62906828-62906847 | Msa1169820:intron | 25.0% |
| ! | TAAGAGAAAAACTATAGTCA+TGG | - | chr7_4:62907117-62907136 | None:intergenic | 25.0% |
| ! | TCTTTCAACAAATGGAATAT+AGG | - | chr7_4:62907181-62907200 | None:intergenic | 25.0% |
| ! | ATATGGAATCTTTCAACAAA+TGG | - | chr7_4:62907189-62907208 | None:intergenic | 25.0% |
| ! | TTCAAGCATGATATAATAGA+AGG | + | chr7_4:62907225-62907244 | Msa1169820:CDS | 25.0% |
| ! | ATCAACAATTTCATTTGGAT+CGG | - | chr7_4:62907550-62907569 | None:intergenic | 25.0% |
| ! | AACATTGTGAGTTTAAAAAG+TGG | - | chr7_4:62907670-62907689 | None:intergenic | 25.0% |
| !!! | TTAAACACACCTTGTTTTCT+GGG | - | chr7_4:62906395-62906414 | None:intergenic | 30.0% |
| TTACATAGATGTCAACTTTG+AGG | + | chr7_4:62906540-62906559 | Msa1169820:CDS | 30.0% | |
| TACATAGATGTCAACTTTGA+GGG | + | chr7_4:62906541-62906560 | Msa1169820:CDS | 30.0% | |
| !!! | GCAAACTGAACTTTTGAAAT+TGG | + | chr7_4:62906814-62906833 | Msa1169820:intron | 30.0% |
| !!! | TTGCCATTTTTCTTTTCTGT+TGG | + | chr7_4:62906945-62906964 | Msa1169820:intron | 30.0% |
| CAACCAACAGAAAAGAAAAA+TGG | - | chr7_4:62906951-62906970 | None:intergenic | 30.0% | |
| !! | TGTTATTGGTTGTGTTGATT+AGG | + | chr7_4:62907146-62907165 | Msa1169820:intron | 30.0% |
| ! | ATTCCATATAGTCTTTTCTG+AGG | + | chr7_4:62907200-62907219 | Msa1169820:CDS | 30.0% |
| AGCATGATATAATAGAAGGA+AGG | + | chr7_4:62907229-62907248 | Msa1169820:CDS | 30.0% | |
| TCATAAACGAATGCAATTGT+GGG | - | chr7_4:62907315-62907334 | None:intergenic | 30.0% | |
| TTCATAAACGAATGCAATTG+TGG | - | chr7_4:62907316-62907335 | None:intergenic | 30.0% | |
| !! | TATTTTCAAGAAACGCTTTC+TGG | + | chr7_4:62907569-62907588 | Msa1169820:CDS | 30.0% |
| TAAAAAGTGGCGAATACAAT+AGG | - | chr7_4:62907657-62907676 | None:intergenic | 30.0% | |
| !!! | TTAAACACACCTTGTTTTCT+GGG | - | chr7_4:62906395-62906414 | None:intergenic | 30.0% |
| TTACATAGATGTCAACTTTG+AGG | + | chr7_4:62906540-62906559 | Msa1169820:CDS | 30.0% | |
| TACATAGATGTCAACTTTGA+GGG | + | chr7_4:62906541-62906560 | Msa1169820:CDS | 30.0% | |
| !!! | GCAAACTGAACTTTTGAAAT+TGG | + | chr7_4:62906814-62906833 | Msa1169820:intron | 30.0% |
| !!! | TTGCCATTTTTCTTTTCTGT+TGG | + | chr7_4:62906945-62906964 | Msa1169820:intron | 30.0% |
| CAACCAACAGAAAAGAAAAA+TGG | - | chr7_4:62906951-62906970 | None:intergenic | 30.0% | |
| !! | TGTTATTGGTTGTGTTGATT+AGG | + | chr7_4:62907146-62907165 | Msa1169820:intron | 30.0% |
| ! | ATTCCATATAGTCTTTTCTG+AGG | + | chr7_4:62907200-62907219 | Msa1169820:CDS | 30.0% |
| AGCATGATATAATAGAAGGA+AGG | + | chr7_4:62907229-62907248 | Msa1169820:CDS | 30.0% | |
| TCATAAACGAATGCAATTGT+GGG | - | chr7_4:62907315-62907334 | None:intergenic | 30.0% | |
| TTCATAAACGAATGCAATTG+TGG | - | chr7_4:62907316-62907335 | None:intergenic | 30.0% | |
| !! | TATTTTCAAGAAACGCTTTC+TGG | + | chr7_4:62907569-62907588 | Msa1169820:CDS | 30.0% |
| TAAAAAGTGGCGAATACAAT+AGG | - | chr7_4:62907657-62907676 | None:intergenic | 30.0% | |
| TTCCTATTAACCTTCAAGAC+AGG | + | chr7_4:62906343-62906362 | Msa1169820:CDS | 35.0% | |
| ACTTTCTCCTTATACCAAAC+AGG | - | chr7_4:62906369-62906388 | None:intergenic | 35.0% | |
| !!! | GTTAAACACACCTTGTTTTC+TGG | - | chr7_4:62906396-62906415 | None:intergenic | 35.0% |
| !! | TGTGTTTAACTTGCTCATAC+AGG | + | chr7_4:62906406-62906425 | Msa1169820:intron | 35.0% |
| !! | GTGTTTAACTTGCTCATACA+GGG | + | chr7_4:62906407-62906426 | Msa1169820:intron | 35.0% |
| ACATAGATGTCAACTTTGAG+GGG | + | chr7_4:62906542-62906561 | Msa1169820:CDS | 35.0% | |
| ! | CAATGAAGAGTACAGATCTT+TGG | - | chr7_4:62906718-62906737 | None:intergenic | 35.0% |
| GATCTGTACTCTTCATTGAA+AGG | + | chr7_4:62906720-62906739 | Msa1169820:CDS | 35.0% | |
| !!! | GCATTACCAGCTTGTTTTAT+AGG | - | chr7_4:62906750-62906769 | None:intergenic | 35.0% |
| AGCATTCTCCAAGTAATCAA+AGG | - | chr7_4:62906859-62906878 | None:intergenic | 35.0% | |
| GCTCTTGGTAAATTTGATGA+TGG | + | chr7_4:62906876-62906895 | Msa1169820:CDS | 35.0% | |
| !! | TTGATGATGGACAATTTCCT+AGG | + | chr7_4:62906889-62906908 | Msa1169820:CDS | 35.0% |
| ATTTCCTAGGACAATTCAGT+TGG | + | chr7_4:62906902-62906921 | Msa1169820:CDS | 35.0% | |
| TTTCCTAGGACAATTCAGTT+GGG | + | chr7_4:62906903-62906922 | Msa1169820:CDS | 35.0% | |
| !! | TATTGGTTGTGTTGATTAGG+TGG | + | chr7_4:62907149-62907168 | Msa1169820:intron | 35.0% |
| ACACCTCAGAAAAGACTATA+TGG | - | chr7_4:62907206-62907225 | None:intergenic | 35.0% | |
| ! | GGTTAAGTTTTCCTCAAGTT+CGG | - | chr7_4:62907364-62907383 | None:intergenic | 35.0% |
| GTGCATAATGTTTCTTTGAC+AGG | + | chr7_4:62907488-62907507 | Msa1169820:intron | 35.0% | |
| TTGATGCTTATACACAGACA+AGG | + | chr7_4:62907523-62907542 | Msa1169820:CDS | 35.0% | |
| TGATGCTTATACACAGACAA+GGG | + | chr7_4:62907524-62907543 | Msa1169820:CDS | 35.0% | |
| ! | ATGATGCTTTTCCATGTTGA+TGG | + | chr7_4:62907945-62907964 | Msa1169820:three_prime_UTR | 35.0% |
| TATTTCACCATCCATCAACA+TGG | - | chr7_4:62907959-62907978 | None:intergenic | 35.0% | |
| TTCCTATTAACCTTCAAGAC+AGG | + | chr7_4:62906343-62906362 | Msa1169820:CDS | 35.0% | |
| ACTTTCTCCTTATACCAAAC+AGG | - | chr7_4:62906369-62906388 | None:intergenic | 35.0% | |
| !!! | GTTAAACACACCTTGTTTTC+TGG | - | chr7_4:62906396-62906415 | None:intergenic | 35.0% |
| !! | TGTGTTTAACTTGCTCATAC+AGG | + | chr7_4:62906406-62906425 | Msa1169820:intron | 35.0% |
| !! | GTGTTTAACTTGCTCATACA+GGG | + | chr7_4:62906407-62906426 | Msa1169820:intron | 35.0% |
| ACATAGATGTCAACTTTGAG+GGG | + | chr7_4:62906542-62906561 | Msa1169820:CDS | 35.0% | |
| ! | CAATGAAGAGTACAGATCTT+TGG | - | chr7_4:62906718-62906737 | None:intergenic | 35.0% |
| GATCTGTACTCTTCATTGAA+AGG | + | chr7_4:62906720-62906739 | Msa1169820:CDS | 35.0% | |
| !!! | GCATTACCAGCTTGTTTTAT+AGG | - | chr7_4:62906750-62906769 | None:intergenic | 35.0% |
| AGCATTCTCCAAGTAATCAA+AGG | - | chr7_4:62906859-62906878 | None:intergenic | 35.0% | |
| GCTCTTGGTAAATTTGATGA+TGG | + | chr7_4:62906876-62906895 | Msa1169820:CDS | 35.0% | |
| !! | TTGATGATGGACAATTTCCT+AGG | + | chr7_4:62906889-62906908 | Msa1169820:CDS | 35.0% |
| ATTTCCTAGGACAATTCAGT+TGG | + | chr7_4:62906902-62906921 | Msa1169820:CDS | 35.0% | |
| TTTCCTAGGACAATTCAGTT+GGG | + | chr7_4:62906903-62906922 | Msa1169820:CDS | 35.0% | |
| !! | TATTGGTTGTGTTGATTAGG+TGG | + | chr7_4:62907149-62907168 | Msa1169820:intron | 35.0% |
| ACACCTCAGAAAAGACTATA+TGG | - | chr7_4:62907206-62907225 | None:intergenic | 35.0% | |
| ! | GGTTAAGTTTTCCTCAAGTT+CGG | - | chr7_4:62907364-62907383 | None:intergenic | 35.0% |
| GTGCATAATGTTTCTTTGAC+AGG | + | chr7_4:62907488-62907507 | Msa1169820:intron | 35.0% | |
| TTGATGCTTATACACAGACA+AGG | + | chr7_4:62907523-62907542 | Msa1169820:CDS | 35.0% | |
| TGATGCTTATACACAGACAA+GGG | + | chr7_4:62907524-62907543 | Msa1169820:CDS | 35.0% | |
| ! | ATGATGCTTTTCCATGTTGA+TGG | + | chr7_4:62907945-62907964 | Msa1169820:three_prime_UTR | 35.0% |
| TATTTCACCATCCATCAACA+TGG | - | chr7_4:62907959-62907978 | None:intergenic | 35.0% | |
| GAAAGTCTACCCAGAAAACA+AGG | + | chr7_4:62906383-62906402 | Msa1169820:CDS | 40.0% | |
| GATCCTGCAAAGAAAGAGTT+TGG | + | chr7_4:62906660-62906679 | Msa1169820:CDS | 40.0% | |
| TCACCAAACTCTTTCTTTGC+AGG | - | chr7_4:62906666-62906685 | None:intergenic | 40.0% | |
| GGAGATCCTATAAAACAAGC+TGG | + | chr7_4:62906741-62906760 | Msa1169820:CDS | 40.0% | |
| TTCTCCAAGTAATCAAAGGC+AGG | - | chr7_4:62906855-62906874 | None:intergenic | 40.0% | |
| GATTACTTGGAGAATGCTCT+TGG | + | chr7_4:62906861-62906880 | Msa1169820:CDS | 40.0% | |
| TTACCCAACTGAATTGTCCT+AGG | - | chr7_4:62906909-62906928 | None:intergenic | 40.0% | |
| TAAAGCATGTGATGGTCTGA+TGG | + | chr7_4:62907023-62907042 | Msa1169820:intron | 40.0% | |
| TCAATCCATGCTGCAAGTTT+CGG | - | chr7_4:62907255-62907274 | None:intergenic | 40.0% | |
| AACTTAACCTGTTCCGCAAA+TGG | + | chr7_4:62907375-62907394 | Msa1169820:CDS | 40.0% | |
| ATCTCGTGTTAACGAGACAT+CGG | - | chr7_4:62907462-62907481 | None:intergenic | 40.0% | |
| ! | CTCACAATGTTCTAACTTGC+AGG | + | chr7_4:62907679-62907698 | Msa1169820:intron | 40.0% |
| CAGGCTCAACAGTGAAAATT+GGG | + | chr7_4:62907698-62907717 | Msa1169820:intron | 40.0% | |
| ! | CAGTGAAAATTGGGTTGCAA+TGG | + | chr7_4:62907707-62907726 | Msa1169820:exon | 40.0% |
| !! | TGCTTTTCCATGTTGATGGA+TGG | + | chr7_4:62907949-62907968 | Msa1169820:three_prime_UTR | 40.0% |
| GAAAGTCTACCCAGAAAACA+AGG | + | chr7_4:62906383-62906402 | Msa1169820:CDS | 40.0% | |
| GATCCTGCAAAGAAAGAGTT+TGG | + | chr7_4:62906660-62906679 | Msa1169820:CDS | 40.0% | |
| TCACCAAACTCTTTCTTTGC+AGG | - | chr7_4:62906666-62906685 | None:intergenic | 40.0% | |
| GGAGATCCTATAAAACAAGC+TGG | + | chr7_4:62906741-62906760 | Msa1169820:CDS | 40.0% | |
| TTCTCCAAGTAATCAAAGGC+AGG | - | chr7_4:62906855-62906874 | None:intergenic | 40.0% | |
| GATTACTTGGAGAATGCTCT+TGG | + | chr7_4:62906861-62906880 | Msa1169820:CDS | 40.0% | |
| TTACCCAACTGAATTGTCCT+AGG | - | chr7_4:62906909-62906928 | None:intergenic | 40.0% | |
| TAAAGCATGTGATGGTCTGA+TGG | + | chr7_4:62907023-62907042 | Msa1169820:intron | 40.0% | |
| TCAATCCATGCTGCAAGTTT+CGG | - | chr7_4:62907255-62907274 | None:intergenic | 40.0% | |
| AACTTAACCTGTTCCGCAAA+TGG | + | chr7_4:62907375-62907394 | Msa1169820:CDS | 40.0% | |
| ATCTCGTGTTAACGAGACAT+CGG | - | chr7_4:62907462-62907481 | None:intergenic | 40.0% | |
| ! | CTCACAATGTTCTAACTTGC+AGG | + | chr7_4:62907679-62907698 | Msa1169820:intron | 40.0% |
| CAGGCTCAACAGTGAAAATT+GGG | + | chr7_4:62907698-62907717 | Msa1169820:intron | 40.0% | |
| ! | CAGTGAAAATTGGGTTGCAA+TGG | + | chr7_4:62907707-62907726 | Msa1169820:exon | 40.0% |
| !! | TGCTTTTCCATGTTGATGGA+TGG | + | chr7_4:62907949-62907968 | Msa1169820:three_prime_UTR | 40.0% |
| GGCCTGTCTTGAAGGTTAAT+AGG | - | chr7_4:62906348-62906367 | None:intergenic | 45.0% | |
| AGACAGGCCTGTTTGGTATA+AGG | + | chr7_4:62906359-62906378 | Msa1169820:CDS | 45.0% | |
| ! | GTATGTATAGGTGCCATCGT+TGG | + | chr7_4:62906474-62906493 | Msa1169820:intron | 45.0% |
| !!! | TCGATTTTTTTTGGGGGTGC+AGG | - | chr7_4:62906601-62906620 | None:intergenic | 45.0% |
| AGGTCCTGCCTTTGATTACT+TGG | + | chr7_4:62906848-62906867 | Msa1169820:intron | 45.0% | |
| ! | GAAACTTGCAGCATGGATTG+AGG | + | chr7_4:62907254-62907273 | Msa1169820:CDS | 45.0% |
| AGGTCATCAATCCGAACTTG+AGG | + | chr7_4:62907350-62907369 | Msa1169820:CDS | 45.0% | |
| ACCTGTTCCGCAAATGGAAA+CGG | + | chr7_4:62907381-62907400 | Msa1169820:CDS | 45.0% | |
| TCCGCAAATGGAAACGGAAA+TGG | + | chr7_4:62907387-62907406 | Msa1169820:CDS | 45.0% | |
| CCCATTTCCGTTTCCATTTG+CGG | - | chr7_4:62907391-62907410 | None:intergenic | 45.0% | |
| CCGCAAATGGAAACGGAAAT+GGG | + | chr7_4:62907388-62907407 | Msa1169820:CDS | 45.0% | |
| ! | AGCTTGAGGACCATTTTCTG+TGG | - | chr7_4:62907414-62907433 | None:intergenic | 45.0% |
| AGAACTCTTGTCGAAGCTTG+AGG | - | chr7_4:62907428-62907447 | None:intergenic | 45.0% | |
| TAACGAGACATCGGAGGTAA+TGG | - | chr7_4:62907453-62907472 | None:intergenic | 45.0% | |
| GCAGGCTCAACAGTGAAAAT+TGG | + | chr7_4:62907697-62907716 | Msa1169820:intron | 45.0% | |
| GGCCTGTCTTGAAGGTTAAT+AGG | - | chr7_4:62906348-62906367 | None:intergenic | 45.0% | |
| AGACAGGCCTGTTTGGTATA+AGG | + | chr7_4:62906359-62906378 | Msa1169820:CDS | 45.0% | |
| ! | GTATGTATAGGTGCCATCGT+TGG | + | chr7_4:62906474-62906493 | Msa1169820:intron | 45.0% |
| !!! | TCGATTTTTTTTGGGGGTGC+AGG | - | chr7_4:62906601-62906620 | None:intergenic | 45.0% |
| AGGTCCTGCCTTTGATTACT+TGG | + | chr7_4:62906848-62906867 | Msa1169820:intron | 45.0% | |
| ! | GAAACTTGCAGCATGGATTG+AGG | + | chr7_4:62907254-62907273 | Msa1169820:CDS | 45.0% |
| AGGTCATCAATCCGAACTTG+AGG | + | chr7_4:62907350-62907369 | Msa1169820:CDS | 45.0% | |
| ACCTGTTCCGCAAATGGAAA+CGG | + | chr7_4:62907381-62907400 | Msa1169820:CDS | 45.0% | |
| TCCGCAAATGGAAACGGAAA+TGG | + | chr7_4:62907387-62907406 | Msa1169820:CDS | 45.0% | |
| CCCATTTCCGTTTCCATTTG+CGG | - | chr7_4:62907391-62907410 | None:intergenic | 45.0% | |
| CCGCAAATGGAAACGGAAAT+GGG | + | chr7_4:62907388-62907407 | Msa1169820:CDS | 45.0% | |
| ! | AGCTTGAGGACCATTTTCTG+TGG | - | chr7_4:62907414-62907433 | None:intergenic | 45.0% |
| AGAACTCTTGTCGAAGCTTG+AGG | - | chr7_4:62907428-62907447 | None:intergenic | 45.0% | |
| TAACGAGACATCGGAGGTAA+TGG | - | chr7_4:62907453-62907472 | None:intergenic | 45.0% | |
| GCAGGCTCAACAGTGAAAAT+TGG | + | chr7_4:62907697-62907716 | Msa1169820:intron | 45.0% | |
| ACCTTCAAGACAGGCCTGTT+TGG | + | chr7_4:62906352-62906371 | Msa1169820:CDS | 50.0% | |
| ACCAAACAGGCCTGTCTTGA+AGG | - | chr7_4:62906356-62906375 | None:intergenic | 50.0% | |
| TGCCATCGTTGGAGCACAAT+GGG | + | chr7_4:62906485-62906504 | Msa1169820:CDS | 50.0% | |
| TTCCCATTGTGCTCCAACGA+TGG | - | chr7_4:62906490-62906509 | None:intergenic | 50.0% | |
| ATCGTTGGAGCACAATGGGA+AGG | + | chr7_4:62906489-62906508 | Msa1169820:CDS | 50.0% | |
| GAGCACAATGGGAAGGTCTT+GGG | + | chr7_4:62906496-62906515 | Msa1169820:CDS | 50.0% | |
| CTCACACTGGGAACTAGAGA+TGG | - | chr7_4:62906568-62906587 | None:intergenic | 50.0% | |
| !! | GGAGAGTGCTTTCTCACACT+GGG | - | chr7_4:62906580-62906599 | None:intergenic | 50.0% |
| !! | AGGAGAGTGCTTTCTCACAC+TGG | - | chr7_4:62906581-62906600 | None:intergenic | 50.0% |
| ! | TGTGATGGTCTGATGGATCG+TGG | + | chr7_4:62907030-62907049 | Msa1169820:intron | 50.0% |
| TCCGTTTCCATTTGCGGAAC+AGG | - | chr7_4:62907385-62907404 | None:intergenic | 50.0% | |
| CGGAAATGGGCCACAGAAAA+TGG | + | chr7_4:62907401-62907420 | Msa1169820:CDS | 50.0% | |
| TCGTGTTAACGAGACATCGG+AGG | - | chr7_4:62907459-62907478 | None:intergenic | 50.0% | |
| TTGCAATGGCACCCTTTGAG+AGG | + | chr7_4:62907721-62907740 | Msa1169820:three_prime_UTR | 50.0% | |
| GCAGCAGTCTACCTCTCAAA+GGG | - | chr7_4:62907735-62907754 | None:intergenic | 50.0% | |
| ACCTTCAAGACAGGCCTGTT+TGG | + | chr7_4:62906352-62906371 | Msa1169820:CDS | 50.0% | |
| ACCAAACAGGCCTGTCTTGA+AGG | - | chr7_4:62906356-62906375 | None:intergenic | 50.0% | |
| TGCCATCGTTGGAGCACAAT+GGG | + | chr7_4:62906485-62906504 | Msa1169820:CDS | 50.0% | |
| TTCCCATTGTGCTCCAACGA+TGG | - | chr7_4:62906490-62906509 | None:intergenic | 50.0% | |
| ATCGTTGGAGCACAATGGGA+AGG | + | chr7_4:62906489-62906508 | Msa1169820:CDS | 50.0% | |
| GAGCACAATGGGAAGGTCTT+GGG | + | chr7_4:62906496-62906515 | Msa1169820:CDS | 50.0% | |
| CTCACACTGGGAACTAGAGA+TGG | - | chr7_4:62906568-62906587 | None:intergenic | 50.0% | |
| !! | GGAGAGTGCTTTCTCACACT+GGG | - | chr7_4:62906580-62906599 | None:intergenic | 50.0% |
| !! | AGGAGAGTGCTTTCTCACAC+TGG | - | chr7_4:62906581-62906600 | None:intergenic | 50.0% |
| ! | TGTGATGGTCTGATGGATCG+TGG | + | chr7_4:62907030-62907049 | Msa1169820:intron | 50.0% |
| TCCGTTTCCATTTGCGGAAC+AGG | - | chr7_4:62907385-62907404 | None:intergenic | 50.0% | |
| CGGAAATGGGCCACAGAAAA+TGG | + | chr7_4:62907401-62907420 | Msa1169820:CDS | 50.0% | |
| TCGTGTTAACGAGACATCGG+AGG | - | chr7_4:62907459-62907478 | None:intergenic | 50.0% | |
| TTGCAATGGCACCCTTTGAG+AGG | + | chr7_4:62907721-62907740 | Msa1169820:three_prime_UTR | 50.0% | |
| GCAGCAGTCTACCTCTCAAA+GGG | - | chr7_4:62907735-62907754 | None:intergenic | 50.0% | |
| GTGCCATCGTTGGAGCACAA+TGG | + | chr7_4:62906484-62906503 | Msa1169820:CDS | 55.0% | |
| GGAGCACAATGGGAAGGTCT+TGG | + | chr7_4:62906495-62906514 | Msa1169820:CDS | 55.0% | |
| GAAGGCCGAAACTTGCAGCA+TGG | + | chr7_4:62907247-62907266 | Msa1169820:CDS | 55.0% | |
| GGCAGCAGTCTACCTCTCAA+AGG | - | chr7_4:62907736-62907755 | None:intergenic | 55.0% | |
| GTGCCATCGTTGGAGCACAA+TGG | + | chr7_4:62906484-62906503 | Msa1169820:CDS | 55.0% | |
| GGAGCACAATGGGAAGGTCT+TGG | + | chr7_4:62906495-62906514 | Msa1169820:CDS | 55.0% | |
| GAAGGCCGAAACTTGCAGCA+TGG | + | chr7_4:62907247-62907266 | Msa1169820:CDS | 55.0% | |
| GGCAGCAGTCTACCTCTCAA+AGG | - | chr7_4:62907736-62907755 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62906312 | 62907991 | 62906312 | ID=Msa1169820;Name=Msa1169820 |
| chr7_4 | mRNA | 62906312 | 62907991 | 62906312 | ID=Msa1169820-mRNA-1;Parent=Msa1169820;Name=Msa1169820-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.16|0.14|1|1|1|7|279|251 |
| chr7_4 | exon | 62906312 | 62906404 | 62906312 | ID=Msa1169820-mRNA-1:exon:20051;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62906484 | 62906582 | 62906484 | ID=Msa1169820-mRNA-1:exon:20052;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62906660 | 62906762 | 62906660 | ID=Msa1169820-mRNA-1:exon:20053;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62906850 | 62906962 | 62906850 | ID=Msa1169820-mRNA-1:exon:20054;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62907168 | 62907422 | 62907168 | ID=Msa1169820-mRNA-1:exon:20055;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62907510 | 62907590 | 62907510 | ID=Msa1169820-mRNA-1:exon:20056;Parent=Msa1169820-mRNA-1 |
| chr7_4 | exon | 62907701 | 62907991 | 62907701 | ID=Msa1169820-mRNA-1:exon:20057;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62906312 | 62906404 | 62906312 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62906484 | 62906582 | 62906484 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62906660 | 62906762 | 62906660 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62906850 | 62906962 | 62906850 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62907168 | 62907422 | 62907168 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62907510 | 62907590 | 62907510 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | CDS | 62907701 | 62907712 | 62907701 | ID=Msa1169820-mRNA-1:cds;Parent=Msa1169820-mRNA-1 |
| chr7_4 | three_prime_UTR | 62907713 | 62907991 | 62907713 | ID=Msa1169820-mRNA-1:three_prime_utr;Parent=Msa1169820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
