AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357080 MtrunA17_Chr1g0193141 97.626 337 8 0 1 337 1 337 0.0 652
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357080 AT5G26770.1 70.270 333 94 2 7 337 6 335 2.64e-164 462
Msa1357080 AT5G26770.2 70.270 333 94 2 7 337 6 335 2.64e-164 462
Msa1357080 AT5G26770.6 65.730 356 94 3 7 337 6 358 7.24e-159 449
Msa1357080 AT5G26770.5 65.730 356 94 3 7 337 6 358 7.24e-159 449
Msa1357080 AT5G26770.3 64.264 333 94 3 7 337 6 315 1.52e-144 411
Msa1357080 AT1G09470.1 61.468 327 125 1 11 337 11 336 1.95e-136 391
Msa1357080 AT5G26770.4 69.643 280 85 0 7 286 6 285 1.16e-134 385
Msa1357080 AT3G05830.3 63.018 338 122 3 1 337 1 336 1.57e-132 381
Msa1357080 AT3G05830.1 63.018 338 122 3 1 337 1 336 1.57e-132 381
Msa1357080 AT1G09470.2 60.245 327 128 2 11 337 11 335 9.30e-130 374
Msa1357080 AT1G09470.3 60.245 327 128 2 11 337 11 335 9.30e-130 374
Msa1357080 AT3G05830.2 60.684 351 122 4 1 337 1 349 5.81e-129 372
Msa1357080 AT1G09483.1 67.925 106 32 2 233 337 1 105 2.36e-42 142

Find 86 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATTGCTTTCATTTAT+AGG 0.131120 tig0015882:-13257 Msa1357080:five_prime_UTR
TTCAGTTGATCCTTTGTTAA+AGG 0.155858 tig0015882:-13105 Msa1357080:CDS
TGATCGCCATCAGTGCTTTC+TGG 0.163697 tig0015882:-9608 Msa1357080:three_prime_UTR
AAAAGCAAAATCAGAATTTC+TGG 0.195429 tig0015882:-10157 Msa1357080:CDS
TGGTAAATTGCAAAAGAAAT+TGG 0.246412 tig0015882:-12711 Msa1357080:CDS
TAGAATTGAGCGTGATATTA+TGG 0.255210 tig0015882:-10980 Msa1357080:CDS
TTCATCTTCTCTATATTCTT+AGG 0.270281 tig0015882:+10892 None:intergenic
AAGTGCCAGTGGTAACTTTA+TGG 0.272422 tig0015882:+9779 None:intergenic
TTGTGAACTGCGAAAATTAT+TGG 0.291074 tig0015882:-10926 Msa1357080:CDS
TCATTCCCTGCATGTGAATA+TGG 0.292327 tig0015882:+13291 None:intergenic
GTCTTTAGCTTCTGAGTTGA+AGG 0.308444 tig0015882:-13042 Msa1357080:CDS
AAGATTATGGAAATGGAAAT+TGG 0.308528 tig0015882:-12731 Msa1357080:CDS
AACAAACTTGAGAAGGTATT+AGG 0.310751 tig0015882:+10024 None:intergenic
AGAGACAAATGCAAAGATTA+TGG 0.320596 tig0015882:-12744 Msa1357080:CDS
TACCTTCTCAAGTTTGTTGT+AGG 0.355203 tig0015882:-10019 Msa1357080:three_prime_UTR
AAATGCAAAGATTATGGAAA+TGG 0.386311 tig0015882:-12738 Msa1357080:CDS
CAGAATTTCTGGGACACCTC+TGG 0.394928 tig0015882:-10146 Msa1357080:CDS
AATATTGATTCAGCACATAA+AGG 0.405506 tig0015882:-11241 Msa1357080:intron
TAATTTACAGAAGGATCTTA+AGG 0.405711 tig0015882:-11043 Msa1357080:CDS
ATGGAGGCTCTCGCAAAATC+CGG 0.409252 tig0015882:-10961 Msa1357080:CDS
GAAACAACGACGTGCTGATC+AGG 0.420227 tig0015882:-10643 Msa1357080:CDS
GAAGGAGCTTCGAAGTCGTT+TGG 0.422346 tig0015882:-13024 Msa1357080:CDS
GAATAAGCTACTGGTTGTTA+AGG 0.427044 tig0015882:-10872 Msa1357080:CDS
GAAGAAGAGAGTGTTGAAGT+TGG 0.430394 tig0015882:-10616 Msa1357080:CDS
AACATCAAAATCAGATCCTA+TGG 0.435412 tig0015882:+13219 None:intergenic
TCGAAGTCGTTTGGCTTCGC+AGG 0.437680 tig0015882:-13015 Msa1357080:CDS
GCACATGTGAAATGCTTTCA+AGG 0.438918 tig0015882:+9661 Msa1357070:three_prime_UTR
TTAAGATCATGTCTGCTCAT+TGG 0.439395 tig0015882:-10819 Msa1357080:CDS
CGCAAAATCCGGGGAGAACA+AGG 0.444877 tig0015882:-10950 Msa1357080:CDS
ATCAACTGAAGCTTGTTTGT+CGG 0.455999 tig0015882:+13118 None:intergenic
AGTTAGAGTTTCTTTAACAT+AGG 0.456089 tig0015882:+12986 None:intergenic
ATGCAGTATGTAGCAGCATC+AGG 0.463598 tig0015882:-9925 Msa1357080:three_prime_UTR
TTGATGTTTACATACAAAAG+AGG 0.471456 tig0015882:-13204 Msa1357080:five_prime_UTR
CTCAGACGCGCAAACTTCAA+AGG 0.472445 tig0015882:-10569 Msa1357080:CDS
GTCTATGTCCATGCTAGTCT+TGG 0.474536 tig0015882:-10108 Msa1357080:CDS
GGCACTTACCATACATATGC+TGG 0.475939 tig0015882:-9763 Msa1357080:three_prime_UTR
TGATGAAATAGTTAGACTTA+AGG 0.477477 tig0015882:-10848 Msa1357080:CDS
GACTAAGGAATTAGAATCAC+AGG 0.477639 tig0015882:-10788 Msa1357080:intron
ACAAGGATTCTTGTATATAG+AGG 0.478425 tig0015882:-10049 Msa1357080:three_prime_UTR
TGTTTATCGCATCATTAAGC+TGG 0.479296 tig0015882:-9827 Msa1357080:three_prime_UTR
TTCAAACTCTTCTGCTGAGA+AGG 0.479809 tig0015882:-12663 Msa1357080:intron
GACTAAAACCAGCATATGTA+TGG 0.484529 tig0015882:+9755 None:intergenic
TGGAGGCTCTCGCAAAATCC+GGG 0.485779 tig0015882:-10960 Msa1357080:CDS
CGAGCAGATGGGAGAGCGAC+GGG 0.486908 tig0015882:-10243 Msa1357080:intron
AAGTTTCATTTCAACAAAGT+TGG 0.487593 tig0015882:-13170 Msa1357080:five_prime_UTR
TTCACAATCCTTGTTCTCCC+CGG 0.489475 tig0015882:+10942 None:intergenic
GAACTTAAAGATCAATTAGC+AGG 0.491351 tig0015882:-10206 Msa1357080:CDS
AGGAAAGCAACAAACAGTTT+CGG 0.509158 tig0015882:-10186 Msa1357080:CDS
GATTCAGCACATAAAGGAGT+TGG 0.509544 tig0015882:-11235 Msa1357080:intron
ATTTATAGGACTTTGATCCC+TGG 0.512765 tig0015882:-13243 Msa1357080:five_prime_UTR
TCATTCAAATCCTTTAACAA+AGG 0.512856 tig0015882:+13095 None:intergenic
TATGTCCATGCTAGTCTTGG+TGG 0.514229 tig0015882:-10105 Msa1357080:CDS
ACTGCGAAAATTATTGGATG+AGG 0.521280 tig0015882:-10920 Msa1357080:CDS
TCATTGGAAGCTCAAGACTA+AGG 0.525004 tig0015882:-10803 Msa1357080:CDS
CTCCTACAACAAACTTGAGA+AGG 0.526108 tig0015882:+10017 None:intergenic
ACATACAAAAGAGGCAAAAG+AGG 0.527488 tig0015882:-13195 Msa1357080:five_prime_UTR
GACTTTGATCCCTGGTCCAT+AGG 0.536840 tig0015882:-13235 Msa1357080:five_prime_UTR
TAAAGAAACTCTAACTAGAC+AGG 0.538869 tig0015882:-12979 Msa1357080:intron
CAACTACCATATTCACATGC+AGG 0.539975 tig0015882:-13297 Msa1357080:five_prime_UTR
AGAGAAGATGAATAAGCTAC+TGG 0.539996 tig0015882:-10881 Msa1357080:CDS
AAAGCAAAATCAGAATTTCT+GGG 0.542452 tig0015882:-10156 Msa1357080:CDS
ACAGAAGGATCTTAAGGCAA+GGG 0.550488 tig0015882:-11037 Msa1357080:CDS
AAAATCAGATCCTATGGACC+AGG 0.554506 tig0015882:+13225 None:intergenic
TACAGAAGGATCTTAAGGCA+AGG 0.554800 tig0015882:-11038 Msa1357080:CDS
AAAGCATTTCACATGTGCGT+AGG 0.555326 tig0015882:-9656 Msa1357080:three_prime_UTR
CTGCGCTGATTGAGCTGATG+CGG 0.556870 tig0015882:+11161 None:intergenic
TCAGACGCGCAAACTTCAAA+GGG 0.558261 tig0015882:-10568 Msa1357080:intron
TTGTTTGTCGGAAATTGACA+TGG 0.561919 tig0015882:+13130 None:intergenic
AAACCATTCCTTTGTTCACA+AGG 0.563095 tig0015882:-10066 Msa1357080:three_prime_UTR
AATCCTTGTGAACAAAGGAA+TGG 0.563482 tig0015882:+10063 None:intergenic
GCAGCTTGATAATTTACAGA+AGG 0.573568 tig0015882:-11052 Msa1357080:CDS
GAAGTTGGAATTCTGTCTGC+AGG 0.579748 tig0015882:-10601 Msa1357080:CDS
AACTACCATATTCACATGCA+GGG 0.606230 tig0015882:-13296 Msa1357080:five_prime_UTR
TATGTGAAACTAATCTGTGT+AGG 0.606402 tig0015882:-9877 Msa1357080:three_prime_UTR
TCGAGCAGATGGGAGAGCGA+CGG 0.608995 tig0015882:-10244 Msa1357080:intron
TAGTTCTCTAAGAGAGCATG+AGG 0.613433 tig0015882:-11097 Msa1357080:CDS
ACAAGAATCCTTGTGAACAA+AGG 0.613946 tig0015882:+10058 None:intergenic
GAGGAACGCGTAATTAGACT+AGG 0.621102 tig0015882:-11078 Msa1357080:CDS
AAATACCACCAAGACTAGCA+TGG 0.627363 tig0015882:+10100 None:intergenic
TGTGACCATAAAGTTACCAC+TGG 0.639898 tig0015882:-9784 Msa1357080:three_prime_UTR
AATTGAGCGTGATATTATGG+AGG 0.642028 tig0015882:-10977 Msa1357080:CDS
TGTTTGTCGGAAATTGACAT+GGG 0.647558 tig0015882:+13131 None:intergenic
ATATGTATGGTAAGTGCCAG+TGG 0.650551 tig0015882:+9768 None:intergenic
AAATCAGATCCTATGGACCA+GGG 0.663062 tig0015882:+13226 None:intergenic
GGAGGCTCTCGCAAAATCCG+GGG 0.664732 tig0015882:-10959 Msa1357080:CDS
GCTCGTAATAGCTAGAGCAA+CGG 0.671851 tig0015882:-11196 Msa1357080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAACAAAAAGTTT+AGG - tig0015882:10741-10760 Msa1357080:intron 10.0%
!! TATAAAAGAAAAAAGGTAAT+AGG + tig0015882:10724-10743 None:intergenic 15.0%
!!! ACATATTTTACTTAACAATA+AGG - tig0015882:10828-10847 Msa1357080:CDS 15.0%
!!! TTAATTCTTCAATTTTTTCT+AGG - tig0015882:10964-10983 Msa1357080:CDS 15.0%
!!! AAATTTTTGTATCAGTTTTA+CGG - tig0015882:11098-11117 Msa1357080:CDS 15.0%
!!! AATTATTTGACCATTTTTTT+GGG - tig0015882:12595-12614 Msa1357080:intron 15.0%
!!! ATAGTTTATTTTTGCTTACA+TGG - tig0015882:9685-9704 Msa1357080:three_prime_UTR 20.0%
!! ATTCAATTGCTTTCATTTAT+AGG - tig0015882:9773-9792 Msa1357080:three_prime_UTR 20.0%
!! ATGATAAAAAACAAAGCTTT+CGG - tig0015882:9954-9973 Msa1357080:three_prime_UTR 20.0%
!!! AAGTTACAATTTTTTTAGCA+TGG + tig0015882:10155-10174 None:intergenic 20.0%
!!! TTTTTTAGTACTGCAATTTA+TGG - tig0015882:10242-10261 Msa1357080:intron 20.0%
!!! TTATGGATTATATTTTTCAC+AGG - tig0015882:10259-10278 Msa1357080:intron 20.0%
!!! AAATTAATTTTAATGTAGGG+AGG - tig0015882:11035-11054 Msa1357080:CDS 20.0%
!! GAACTTATAAATAAGAATTC+TGG + tig0015882:11287-11306 None:intergenic 20.0%
!! ACTTATAAGATATGATGTAT+AGG + tig0015882:11466-11485 None:intergenic 20.0%
!! TTTAAAGGTTAATGCATAAT+TGG + tig0015882:11532-11551 None:intergenic 20.0%
!!! TTTTTCTTCATTAAGGAATA+AGG + tig0015882:11617-11636 None:intergenic 20.0%
!!! AATCCATTTAAGTTTATTGA+TGG - tig0015882:12345-12364 Msa1357080:intron 20.0%
!! AATCCATCAATAAACTTAAA+TGG + tig0015882:12351-12370 None:intergenic 20.0%
!!! GAATTATTTGACCATTTTTT+TGG - tig0015882:12594-12613 Msa1357080:intron 20.0%
!!! TTATACAAGTTTTCATTGAT+GGG - tig0015882:12664-12683 Msa1357080:CDS 20.0%
!!! ATAACTTGTTTTCACGAAAA+GGG + tig0015882:9623-9642 Msa1357070:three_prime_UTR 25.0%
!!! AATAACTTGTTTTCACGAAA+AGG + tig0015882:9624-9643 Msa1357070:three_prime_UTR 25.0%
! TTGATGTTTACATACAAAAG+AGG - tig0015882:9826-9845 Msa1357080:three_prime_UTR 25.0%
! AAGTTTCATTTCAACAAAGT+TGG - tig0015882:9860-9879 Msa1357080:three_prime_UTR 25.0%
! TCATTCAAATCCTTTAACAA+AGG + tig0015882:9938-9957 None:intergenic 25.0%
! AGTTAGAGTTTCTTTAACAT+AGG + tig0015882:10047-10066 None:intergenic 25.0%
!!! TTGTTCTGTTTTTCTCTTTT+TGG - tig0015882:10129-10148 Msa1357080:CDS 25.0%
!! AGTATCAATCATTCTACTTT+TGG - tig0015882:10182-10201 Msa1357080:CDS 25.0%
! AAATGCAAAGATTATGGAAA+TGG - tig0015882:10292-10311 Msa1357080:intron 25.0%
! AAGATTATGGAAATGGAAAT+TGG - tig0015882:10299-10318 Msa1357080:intron 25.0%
! TGGTAAATTGCAAAAGAAAT+TGG - tig0015882:10319-10338 Msa1357080:intron 25.0%
!!! TACCTTATTATTTCTTTTCG+TGG - tig0015882:10408-10427 Msa1357080:intron 25.0%
! AACCACGAAAAGAAATAATA+AGG + tig0015882:10413-10432 None:intergenic 25.0%
!!! AATGTTTCCACTTTTTGTTT+TGG - tig0015882:10479-10498 Msa1357080:intron 25.0%
! GTAACAAGATCCTAAAAAAT+GGG + tig0015882:10630-10649 None:intergenic 25.0%
! AGTAACAAGATCCTAAAAAA+TGG + tig0015882:10631-10650 None:intergenic 25.0%
!!! ATTAGTCTTAAGACTTTCTT+TGG + tig0015882:10787-10806 None:intergenic 25.0%
! AATTCAGTTCATATCTACAA+GGG + tig0015882:10886-10905 None:intergenic 25.0%
! ATTAACATCCTAGTTAGAAA+GGG + tig0015882:10949-10968 None:intergenic 25.0%
! AATTAACATCCTAGTTAGAA+AGG + tig0015882:10950-10969 None:intergenic 25.0%
!!! ATAATTTTTCTAGCCAGTAA+TGG - tig0015882:11382-11401 Msa1357080:intron 25.0%
! CTAGAGTACAATCTATTTAA+AGG + tig0015882:11547-11566 None:intergenic 25.0%
!! TGTCATCTTTTTCTTCATTA+AGG + tig0015882:11624-11643 None:intergenic 25.0%
! ATTCTTTGTAACTAAAGTCT+CGG - tig0015882:11742-11761 Msa1357080:intron 25.0%
!!! AATATTGATTCAGCACATAA+AGG - tig0015882:11789-11808 Msa1357080:intron 25.0%
! TAATTTACAGAAGGATCTTA+AGG - tig0015882:11987-12006 Msa1357080:intron 25.0%
! TTCATCTTCTCTATATTCTT+AGG + tig0015882:12141-12160 None:intergenic 25.0%
! TGATGAAATAGTTAGACTTA+AGG - tig0015882:12182-12201 Msa1357080:intron 25.0%
! ATATGAACGAGTAATAACAA+GGG + tig0015882:12288-12307 None:intergenic 25.0%
! TATATGAACGAGTAATAACA+AGG + tig0015882:12289-12308 None:intergenic 25.0%
! TATTACTCGTTCATATACTT+AGG - tig0015882:12292-12311 Msa1357080:intron 25.0%
! ATTACTCGTTCATATACTTA+GGG - tig0015882:12293-12312 Msa1357080:intron 25.0%
!!! AAACTTAAATGGATTAGCTA+TGG + tig0015882:12340-12359 None:intergenic 25.0%
! TAAATTCTTGCCCAAAAAAA+TGG + tig0015882:12608-12627 None:intergenic 25.0%
! GATAAGAAACACTACAAATA+AGG - tig0015882:12636-12655 Msa1357080:intron 25.0%
!! CTTATACAAGTTTTCATTGA+TGG - tig0015882:12663-12682 Msa1357080:intron 25.0%
!!! GAAATTCTGATTTTGCTTTT+CGG + tig0015882:12873-12892 None:intergenic 25.0%
! AAAAGCAAAATCAGAATTTC+TGG - tig0015882:12873-12892 Msa1357080:intron 25.0%
! AAAGCAAAATCAGAATTTCT+GGG - tig0015882:12874-12893 Msa1357080:intron 25.0%
AACATCAAAATCAGATCCTA+TGG + tig0015882:9814-9833 None:intergenic 30.0%
TTCAGTTGATCCTTTGTTAA+AGG - tig0015882:9925-9944 Msa1357080:three_prime_UTR 30.0%
TAAAGAAACTCTAACTAGAC+AGG - tig0015882:10051-10070 Msa1357080:three_prime_UTR 30.0%
AGAGACAAATGCAAAGATTA+TGG - tig0015882:10286-10305 Msa1357080:intron 30.0%
!! TTCATTTTAGCATATCCCAT+TGG - tig0015882:10666-10685 Msa1357080:intron 30.0%
AACAAAAAGTTTAGGTGAGA+TGG - tig0015882:10749-10768 Msa1357080:intron 30.0%
TAAGGTCTTTACATTAGTAG+CGG - tig0015882:10846-10865 Msa1357080:CDS 30.0%
GAATTCAGTTCATATCTACA+AGG + tig0015882:10887-10906 None:intergenic 30.0%
! ATAAGAGAGTTTTCCAACAA+TGG + tig0015882:10917-10936 None:intergenic 30.0%
TGTGGTAATTCAGAAAAATG+TGG + tig0015882:10990-11009 None:intergenic 30.0%
!! TTGATTTGGTAATAAGCTTG+TGG + tig0015882:11008-11027 None:intergenic 30.0%
! TTTTAATGTAGGGAGGAAAT+TGG - tig0015882:11042-11061 Msa1357080:CDS 30.0%
TTTAATGTAGGGAGGAAATT+GGG - tig0015882:11043-11062 Msa1357080:CDS 30.0%
! AGTGATTTTCCAACTTAGAA+TGG + tig0015882:11075-11094 None:intergenic 30.0%
GGGTCATTTGAATATACAAT+TGG + tig0015882:11162-11181 None:intergenic 30.0%
ATAAGTGACTTCAATAGTGA+AGG + tig0015882:11309-11328 None:intergenic 30.0%
TCACTTATTGTACTGCAATA+TGG - tig0015882:11321-11340 Msa1357080:intron 30.0%
TTATTGTACTGCAATATGGA+AGG - tig0015882:11325-11344 Msa1357080:intron 30.0%
ATCACGTGAGTATATTCAAT+AGG - tig0015882:11351-11370 Msa1357080:intron 30.0%
TCACGTGAGTATATTCAATA+GGG - tig0015882:11352-11371 Msa1357080:intron 30.0%
TCATTACTTCATCGATAACT+TGG + tig0015882:11497-11516 None:intergenic 30.0%
! TCGATGAAGTAATGAACTTT+TGG - tig0015882:11502-11521 Msa1357080:intron 30.0%
!! ATCTAATGCAGTTTTGGTAA+TGG + tig0015882:11658-11677 None:intergenic 30.0%
CTTCGAACTTCAAAAAGAAT+TGG - tig0015882:11900-11919 Msa1357080:intron 30.0%
TAGAATTGAGCGTGATATTA+TGG - tig0015882:12050-12069 Msa1357080:intron 30.0%
TTGTGAACTGCGAAAATTAT+TGG - tig0015882:12104-12123 Msa1357080:intron 30.0%
!! GGCTTTCTTTTCTTTATTTG+AGG - tig0015882:12314-12333 Msa1357080:intron 30.0%
AGGAAATGCTTAAATGTTTG+TGG - tig0015882:12525-12544 Msa1357080:intron 30.0%
!!! CTGTTATAGATCTGCTTTTT+GGG - tig0015882:12563-12582 Msa1357080:intron 30.0%
GTAAATGATCGCATGATAAT+AGG + tig0015882:12705-12724 None:intergenic 30.0%
! TGATTTCACTAAGTTGACTA+AGG + tig0015882:12745-12764 None:intergenic 30.0%
GAACTTAAAGATCAATTAGC+AGG - tig0015882:12824-12843 Msa1357080:intron 30.0%
ACAAGGATTCTTGTATATAG+AGG - tig0015882:12981-13000 Msa1357080:CDS 30.0%
!! AACAAACTTGAGAAGGTATT+AGG + tig0015882:13009-13028 None:intergenic 30.0%
!!! GAGTAAAGAGAAGTTTTAGA+AGG - tig0015882:13033-13052 Msa1357080:CDS 30.0%
TATGTGAAACTAATCTGTGT+AGG - tig0015882:13153-13172 Msa1357080:five_prime_UTR 30.0%
! TAGGTGCGCTTATATATTTT+AGG - tig0015882:13172-13191 Msa1357080:five_prime_UTR 30.0%
AACTACCATATTCACATGCA+GGG - tig0015882:9734-9753 Msa1357080:three_prime_UTR 35.0%
ATTTATAGGACTTTGATCCC+TGG - tig0015882:9787-9806 Msa1357080:three_prime_UTR 35.0%
ACATACAAAAGAGGCAAAAG+AGG - tig0015882:9835-9854 Msa1357080:three_prime_UTR 35.0%
TGTTTGTCGGAAATTGACAT+GGG + tig0015882:9902-9921 None:intergenic 35.0%
TTGTTTGTCGGAAATTGACA+TGG + tig0015882:9903-9922 None:intergenic 35.0%
! ATCAACTGAAGCTTGTTTGT+CGG + tig0015882:9915-9934 None:intergenic 35.0%
!!! TTCTACTTTTGGAGTCTTTG+TGG - tig0015882:10193-10212 Msa1357080:CDS 35.0%
AGAAAAAAATGAGCAGCTTC+AGG - tig0015882:10343-10362 Msa1357080:intron 35.0%
CGTGGTTTATGAATATCTCT+TGG - tig0015882:10426-10445 Msa1357080:intron 35.0%
GAATCGTCCAAAACAAAAAG+TGG + tig0015882:10489-10508 None:intergenic 35.0%
!!! GTTTGCTTTTCTAGCTGAAA+TGG - tig0015882:10529-10548 Msa1357080:intron 35.0%
!!! ACACTAGATGCCCATTTTTT+AGG - tig0015882:10617-10636 Msa1357080:CDS 35.0%
GGGATATGCTAAAATGAAAG+AGG + tig0015882:10664-10683 None:intergenic 35.0%
AGAAGGTTGAGTAGATACTT+TGG - tig0015882:10698-10717 Msa1357080:intron 35.0%
GAATTCTTATCGACCATTGT+TGG - tig0015882:10901-10920 Msa1357080:CDS 35.0%
GGAAAACTCTCTTATTCTTG+TGG - tig0015882:10922-10941 Msa1357080:CDS 35.0%
TGAGTATATTCAATAGGGAC+TGG - tig0015882:11357-11376 Msa1357080:intron 35.0%
GAGTATATTCAATAGGGACT+GGG - tig0015882:11358-11377 Msa1357080:intron 35.0%
! GTCAGAATCTAATGCAGTTT+TGG + tig0015882:11664-11683 None:intergenic 35.0%
CTATGTACATAATGTTCCGT+TGG + tig0015882:11701-11720 None:intergenic 35.0%
!!! CTTTTTGAAGTTCGAAGCAT+TGG + tig0015882:11897-11916 None:intergenic 35.0%
! GCAGCTTGATAATTTACAGA+AGG - tig0015882:11978-11997 Msa1357080:intron 35.0%
AATTGAGCGTGATATTATGG+AGG - tig0015882:12053-12072 Msa1357080:intron 35.0%
ACTGCGAAAATTATTGGATG+AGG - tig0015882:12110-12129 Msa1357080:intron 35.0%
AGAGAAGATGAATAAGCTAC+TGG - tig0015882:12149-12168 Msa1357080:intron 35.0%
! GAATAAGCTACTGGTTGTTA+AGG - tig0015882:12158-12177 Msa1357080:intron 35.0%
TTAAGATCATGTCTGCTCAT+TGG - tig0015882:12211-12230 Msa1357080:intron 35.0%
GACTAAGGAATTAGAATCAC+AGG - tig0015882:12242-12261 Msa1357080:intron 35.0%
TAATAACAAGGGCAAAGATC+AGG + tig0015882:12277-12296 None:intergenic 35.0%
! GATGGATTTCAAAACACAGT+TGG - tig0015882:12363-12382 Msa1357080:intron 35.0%
!!! GCACTCATTTTGTGTCATTT+AGG - tig0015882:12505-12524 Msa1357080:intron 35.0%
TGTTTGTGGTTACAGTGAAT+TGG - tig0015882:12539-12558 Msa1357080:intron 35.0%
GTTTGTGGTTACAGTGAATT+GGG - tig0015882:12540-12559 Msa1357080:intron 35.0%
!! GCTGTTATAGATCTGCTTTT+TGG - tig0015882:12562-12581 Msa1357080:intron 35.0%
!! TTTTCATTGATGGGCATGAT+TGG - tig0015882:12673-12692 Msa1357080:CDS 35.0%
AGGAAAGCAACAAACAGTTT+CGG - tig0015882:12844-12863 Msa1357080:intron 35.0%
! CATCACAATTTTGAATCCAG+AGG + tig0015882:12903-12922 None:intergenic 35.0%
!! TCTTGGTGGTATTTTCAAAG+CGG - tig0015882:12939-12958 Msa1357080:intron 35.0%
AAACCATTCCTTTGTTCACA+AGG - tig0015882:12964-12983 Msa1357080:intron 35.0%
AATCCTTGTGAACAAAGGAA+TGG + tig0015882:12970-12989 None:intergenic 35.0%
ACAAGAATCCTTGTGAACAA+AGG + tig0015882:12975-12994 None:intergenic 35.0%
!! TACCTTCTCAAGTTTGTTGT+AGG - tig0015882:13011-13030 Msa1357080:CDS 35.0%
TGTTTATCGCATCATTAAGC+TGG - tig0015882:13203-13222 Msa1357080:five_prime_UTR 35.0%
GACTAAAACCAGCATATGTA+TGG + tig0015882:13278-13297 None:intergenic 35.0%
! GGTTAAAAAGTCAAGGTGTT+TGG - tig0015882:13395-13414 Msa1357080:five_prime_UTR 35.0%
CAACTACCATATTCACATGC+AGG - tig0015882:9733-9752 Msa1357080:three_prime_UTR 40.0%
TCATTCCCTGCATGTGAATA+TGG + tig0015882:9742-9761 None:intergenic 40.0%
AAATCAGATCCTATGGACCA+GGG + tig0015882:9807-9826 None:intergenic 40.0%
AAAATCAGATCCTATGGACC+AGG + tig0015882:9808-9827 None:intergenic 40.0%
! GTCTTTAGCTTCTGAGTTGA+AGG - tig0015882:9988-10007 Msa1357080:three_prime_UTR 40.0%
!!! TTTTGGAGTCTTTGTGGTTG+TGG - tig0015882:10199-10218 Msa1357080:CDS 40.0%
! TTTGGAGTCTTTGTGGTTGT+GGG - tig0015882:10200-10219 Msa1357080:CDS 40.0%
TTCAAACTCTTCTGCTGAGA+AGG - tig0015882:10367-10386 Msa1357080:intron 40.0%
!! TAGCATATCCCATTGGTCTT+TGG - tig0015882:10673-10692 Msa1357080:intron 40.0%
GACTTTCTTTGGCCAAGTAA+AGG + tig0015882:10776-10795 None:intergenic 40.0%
TGCAAATATGGGCACAACAT+AGG + tig0015882:11236-11255 None:intergenic 40.0%
AAGAATTCTGGCAGCATCTA+TGG + tig0015882:11275-11294 None:intergenic 40.0%
!! TTTTCTAGCCAGTAATGGAG+AGG - tig0015882:11387-11406 Msa1357080:intron 40.0%
GATAAGATCCTCTCCATTAC+TGG + tig0015882:11398-11417 None:intergenic 40.0%
! ACTAGTTCTCTGTTGACCAA+CGG - tig0015882:11682-11701 Msa1357080:intron 40.0%
GATTCAGCACATAAAGGAGT+TGG - tig0015882:11795-11814 Msa1357080:intron 40.0%
! TAGTTCTCTAAGAGAGCATG+AGG - tig0015882:11933-11952 Msa1357080:intron 40.0%
TACAGAAGGATCTTAAGGCA+AGG - tig0015882:11992-12011 Msa1357080:intron 40.0%
ACAGAAGGATCTTAAGGCAA+GGG - tig0015882:11993-12012 Msa1357080:intron 40.0%
TCATTGGAAGCTCAAGACTA+AGG - tig0015882:12227-12246 Msa1357080:intron 40.0%
!! GAAGAAGAGAGTGTTGAAGT+TGG - tig0015882:12414-12433 Msa1357080:intron 40.0%
GACTAAGGATGTTCAGATGA+TGG + tig0015882:12730-12749 None:intergenic 40.0%
AAATACCACCAAGACTAGCA+TGG + tig0015882:12933-12952 None:intergenic 40.0%
CTCCTACAACAAACTTGAGA+AGG + tig0015882:13016-13035 None:intergenic 40.0%
TGTGACCATAAAGTTACCAC+TGG - tig0015882:13246-13265 Msa1357080:five_prime_UTR 40.0%
AAGTGCCAGTGGTAACTTTA+TGG + tig0015882:13254-13273 None:intergenic 40.0%
ATATGTATGGTAAGTGCCAG+TGG + tig0015882:13265-13284 None:intergenic 40.0%
GCACATGTGAAATGCTTTCA+AGG + tig0015882:13372-13391 None:intergenic 40.0%
! AAAGCATTTCACATGTGCGT+AGG - tig0015882:13374-13393 Msa1357080:five_prime_UTR 40.0%
GTGCGTAGGTTAAAAAGTCA+AGG - tig0015882:13388-13407 Msa1357080:five_prime_UTR 40.0%
!! GAAAAACCAGAAAGCACTGA+TGG + tig0015882:13431-13450 None:intergenic 40.0%
TTGGAGTCTTTGTGGTTGTG+GGG - tig0015882:10201-10220 Msa1357080:CDS 45.0%
CCTTCTCACCAAAGACCAAT+GGG + tig0015882:10684-10703 None:intergenic 45.0%
ACCTTCTCACCAAAGACCAA+TGG + tig0015882:10685-10704 None:intergenic 45.0%
AGGTGAGATGGACCTTTACT+TGG - tig0015882:10761-10780 Msa1357080:intron 45.0%
CTTGTGGTCCCTTTCTAACT+AGG - tig0015882:10938-10957 Msa1357080:CDS 45.0%
TGTAGGGAGGAAATTGGGAT+TGG - tig0015882:11048-11067 Msa1357080:CDS 45.0%
!! GGGATTGGTCCATTCTAAGT+TGG - tig0015882:11063-11082 Msa1357080:CDS 45.0%
AAACTACCAACGCTCTAGCA+CGG + tig0015882:11188-11207 None:intergenic 45.0%
GGGTAGCATGGTGCAAATAT+GGG + tig0015882:11247-11266 None:intergenic 45.0%
TGGGTAGCATGGTGCAAATA+TGG + tig0015882:11248-11267 None:intergenic 45.0%
TCTATGGCAATTGGGTAGCA+TGG + tig0015882:11259-11278 None:intergenic 45.0%
TGGCAGCATCTATGGCAATT+GGG + tig0015882:11267-11286 None:intergenic 45.0%
GCTCGTAATAGCTAGAGCAA+CGG - tig0015882:11834-11853 Msa1357080:intron 45.0%
GAGGAACGCGTAATTAGACT+AGG - tig0015882:11952-11971 Msa1357080:intron 45.0%
TTCACAATCCTTGTTCTCCC+CGG + tig0015882:12091-12110 None:intergenic 45.0%
GAAGTTGGAATTCTGTCTGC+AGG - tig0015882:12429-12448 Msa1357080:intron 45.0%
TCAGACGCGCAAACTTCAAA+GGG - tig0015882:12462-12481 Msa1357080:intron 45.0%
!! TGCATGTGTTTTCGAGCAGA+TGG - tig0015882:12775-12794 Msa1357080:intron 45.0%
!! GCATGTGTTTTCGAGCAGAT+GGG - tig0015882:12776-12795 Msa1357080:intron 45.0%
! GTCTATGTCCATGCTAGTCT+TGG - tig0015882:12922-12941 Msa1357080:intron 45.0%
!! TATGTCCATGCTAGTCTTGG+TGG - tig0015882:12925-12944 Msa1357080:intron 45.0%
ATGCAGTATGTAGCAGCATC+AGG - tig0015882:13105-13124 Msa1357080:CDS 45.0%
GGCACTTACCATACATATGC+TGG - tig0015882:13267-13286 Msa1357080:five_prime_UTR 45.0%
!!! ATGCTGGTTTTAGTCGCTGA+TGG - tig0015882:13283-13302 Msa1357080:five_prime_UTR 45.0%
!! TTATTATTATAAAAGAAAAA+AGG + tig0015882:10731-10750 None:intergenic 5.0%
!!! TTAATTTTAATTTTTTGATT+TGG + tig0015882:11022-11041 None:intergenic 5.0%
!!! ATTAAAATTAATTTTAATGT+AGG - tig0015882:11031-11050 Msa1357080:CDS 5.0%
!!! TTAAAATTAATTTTAATGTA+GGG - tig0015882:11032-11051 Msa1357080:CDS 5.0%
GACTTTGATCCCTGGTCCAT+AGG - tig0015882:9795-9814 Msa1357080:three_prime_UTR 50.0%
GAAGGAGCTTCGAAGTCGTT+TGG - tig0015882:10006-10025 Msa1357080:three_prime_UTR 50.0%
TCTTTGTGGTTGTGGGGTCA+AGG - tig0015882:10207-10226 Msa1357080:CDS 50.0%
!! CCCATTGGTCTTTGGTGAGA+AGG - tig0015882:10681-10700 Msa1357080:intron 50.0%
AACTACCAACGCTCTAGCAC+GGG + tig0015882:11187-11206 None:intergenic 50.0%
CTGGCAGCATCTATGGCAAT+TGG + tig0015882:11268-11287 None:intergenic 50.0%
ATGGAGGCTCTCGCAAAATC+CGG - tig0015882:12069-12088 Msa1357080:intron 50.0%
! GAAACAACGACGTGCTGATC+AGG - tig0015882:12387-12406 Msa1357080:intron 50.0%
CTCAGACGCGCAAACTTCAA+AGG - tig0015882:12461-12480 Msa1357080:intron 50.0%
!! CAGAATTTCTGGGACACCTC+TGG - tig0015882:12884-12903 Msa1357080:intron 50.0%
TGATCGCCATCAGTGCTTTC+TGG - tig0015882:13422-13441 Msa1357080:five_prime_UTR 50.0%
! TCGAAGTCGTTTGGCTTCGC+AGG - tig0015882:10015-10034 Msa1357080:three_prime_UTR 55.0%
!! CTGCGCTGATTGAGCTGATG+CGG + tig0015882:11872-11891 None:intergenic 55.0%
TGGAGGCTCTCGCAAAATCC+GGG - tig0015882:12070-12089 Msa1357080:intron 55.0%
CGCAAAATCCGGGGAGAACA+AGG - tig0015882:12080-12099 Msa1357080:intron 55.0%
CCAACGCTCTAGCACGGGAA+GGG + tig0015882:11182-11201 None:intergenic 60.0%
ACCAACGCTCTAGCACGGGA+AGG + tig0015882:11183-11202 None:intergenic 60.0%
GGAGGCTCTCGCAAAATCCG+GGG - tig0015882:12071-12090 Msa1357080:intron 60.0%
TCGAGCAGATGGGAGAGCGA+CGG - tig0015882:12786-12805 Msa1357080:intron 60.0%
CCCTTCCCGTGCTAGAGCGT+TGG - tig0015882:11179-11198 Msa1357080:CDS 65.0%
CGAGCAGATGGGAGAGCGAC+GGG - tig0015882:12787-12806 Msa1357080:intron 65.0%
Chromosome Type Strat End Strand Name
tig0015882 gene 9601 13451 9601 ID=Msa1357080;Name=Msa1357080
tig0015882 mRNA 9601 13451 9601 ID=Msa1357080-mRNA-1;Parent=Msa1357080;Name=Msa1357080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=301|1|1|1|1|1|5|487|337
tig0015882 exon 9601 10258 9601 ID=Msa1357080-mRNA-1:exon:10237;Parent=Msa1357080-mRNA-1
tig0015882 exon 10569 10670 10569 ID=Msa1357080-mRNA-1:exon:10236;Parent=Msa1357080-mRNA-1
tig0015882 exon 10789 11250 10789 ID=Msa1357080-mRNA-1:exon:10235;Parent=Msa1357080-mRNA-1
tig0015882 exon 12664 12771 12664 ID=Msa1357080-mRNA-1:exon:10234;Parent=Msa1357080-mRNA-1
tig0015882 exon 12980 13451 12980 ID=Msa1357080-mRNA-1:exon:10233;Parent=Msa1357080-mRNA-1
tig0015882 five_prime_UTR 13151 13451 13151 ID=Msa1357080-mRNA-1:five_prime_utr;Parent=Msa1357080-mRNA-1
tig0015882 CDS 12980 13150 12980 ID=Msa1357080-mRNA-1:cds;Parent=Msa1357080-mRNA-1
tig0015882 CDS 12664 12771 12664 ID=Msa1357080-mRNA-1:cds;Parent=Msa1357080-mRNA-1
tig0015882 CDS 10789 11250 10789 ID=Msa1357080-mRNA-1:cds;Parent=Msa1357080-mRNA-1
tig0015882 CDS 10569 10670 10569 ID=Msa1357080-mRNA-1:cds;Parent=Msa1357080-mRNA-1
tig0015882 CDS 10088 10258 10088 ID=Msa1357080-mRNA-1:cds;Parent=Msa1357080-mRNA-1
tig0015882 three_prime_UTR 9601 10087 9601 ID=Msa1357080-mRNA-1:three_prime_utr;Parent=Msa1357080-mRNA-1
Gene Sequence

>Msa1357080

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGGAGAAACGTTGTGTCTTTAGCTTCTGAGTTGAAGGAGCTTCGAAGTCGTTTGGCTTCGCAGGAACAATCCTATGTTAAAGAAACTCTAACTAGACAGGAAGCAGAGACAAATGCAAAGATTATGGAAATGGAAATTGGTAAATTGCAAAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTCGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAAGATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGTTGGAGAAACAACGACGTGCTGATCAGGATCTGAAGAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGATGGGAGAGCGACGGGACAAAGCTATTAAAGAACTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>Msa1357080

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETLTRQEAETNAKIMEMEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR*