AlfalfaGEDB | Msa0473330

M. sativa cultivar zhongmu-4 / Msa0473330

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009648 GO:0009653 GO:0009743 GO:0009756 GO:0009791 GO:0009814 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010150 GO:0010182 GO:0010228 GO:0016020 GO:0016043 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048468 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071840 GO:0090558 GO:0090626 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473330	AES72724.2	95.000	540	19	2	1	532	10	549	0.0	1060

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473330	sp\|Q9LV85\|CPR5_ARATH	38.254	481	274	11	37	510	90	554	9.10e-108	336

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473330	G7JA92	95.000	540	19	2	1	532	10	549	0.0	1060

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0473330	0.843839	1.094658e-58	-8.615850e-47
Msa0002680	Msa0473330	0.825855	3.733048e-54	-8.615850e-47
Msa0002710	Msa0473330	0.803124	4.048481e-49	-8.615850e-47
Msa0003220	Msa0473330	0.853983	1.665950e-61	-8.615850e-47
Msa0003270	Msa0473330	0.808997	2.352128e-50	-8.615850e-47
Msa0003400	Msa0473330	0.801031	1.090880e-48	-8.615850e-47
Msa0005270	Msa0473330	0.821064	4.923759e-53	-8.615850e-47
Msa0005620	Msa0473330	0.825807	3.831985e-54	-8.615850e-47
Msa0007970	Msa0473330	0.802069	6.682613e-49	-8.615850e-47
Msa0007990	Msa0473330	0.824279	8.795007e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473330	MtrunA17_Chr3g0129121	95.000	540	19	2	1	532	10	549	0.0	1060

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0473330	AT5G64930.1	38.254	481	274	11	37	510	90	554	9.25e-109	336

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Find 135 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCATAGAAAAGAAAC+CGG	0.529156	3_3:-75917741	None:intergenic
AACACTGCAGACAAAGAAAG+GGG	0.647953	3_3:+75917693	Msa0473330:CDS
AACCATGTGTATAGACACAC+TGG	0.581583	3_3:+75917561	Msa0473330:CDS
AACTTTCAACATTACACCAT+AGG	0.604889	3_3:-75918040	None:intergenic
AAGAACTAAACTTAAAGGGA+AGG	0.560116	3_3:+75914756	Msa0473330:CDS
AAGTGTCGATCTCAGCCATT+GGG	0.428422	3_3:-75914669	None:intergenic
AATATTATACTTGCCTCTTC+TGG	0.214955	3_3:-75916740	None:intergenic
AATCATCGGCTAGCAATGAA+GGG	0.615080	3_3:+75916114	Msa0473330:CDS
AATGTCGGTCGCCGCTGTTA+TGG	0.409104	3_3:+75914864	Msa0473330:CDS
AATTAGTCGTGAAGAGGTTG+GGG	0.548529	3_3:+75916271	Msa0473330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCGATGAATTATACGAAT+TGG	-	chr3_3:75914731-75914750	None:intergenic	30.0%
AAGAACTAAACTTAAAGGGA+AGG	+	chr3_3:75914756-75914775	Msa0473330:CDS	30.0%
AGAACTAAACTTAAAGGGAA+GGG	+	chr3_3:75914757-75914776	Msa0473330:CDS	30.0%
GTAATAATGTTGCAGCTATT+GGG	+	chr3_3:75914830-75914849	Msa0473330:CDS	30.0%
TACTTCCAGACACATAAAAT+TGG	-	chr3_3:75915263-75915282	None:intergenic	30.0%
GAAATTGAAAGAGACAGAAT+TGG	+	chr3_3:75916481-75916500	Msa0473330:CDS	30.0%
CAGTTAGAAGATACAAGATA+TGG	+	chr3_3:75916593-75916612	Msa0473330:CDS	30.0%
ATAAGCACCATAAAAAAGTG+AGG	-	chr3_3:75916675-75916694	None:intergenic	30.0%
AATATTATACTTGCCTCTTC+TGG	-	chr3_3:75916743-75916762	None:intergenic	30.0%
GCATAGAATAAAATTGGAAC+AGG	-	chr3_3:75916775-75916794	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	75914500	75918132	75914500	ID=Msa0473330;Name=Msa0473330
chr3_3	mRNA	75914500	75918132	75914500	ID=Msa0473330-mRNA-1;Parent=Msa0473330;Name=Msa0473330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=173\|0.75\|0.8\|1\|1\|1\|5\|226\|532
chr3_3	exon	75914500	75914891	75914500	ID=Msa0473330-mRNA-1:exon:19782;Parent=Msa0473330-mRNA-1
chr3_3	exon	75915409	75915465	75915409	ID=Msa0473330-mRNA-1:exon:19783;Parent=Msa0473330-mRNA-1
chr3_3	exon	75915845	75915880	75915845	ID=Msa0473330-mRNA-1:exon:19784;Parent=Msa0473330-mRNA-1
chr3_3	exon	75916029	75916748	75916029	ID=Msa0473330-mRNA-1:exon:19785;Parent=Msa0473330-mRNA-1
chr3_3	exon	75917340	75918132	75917340	ID=Msa0473330-mRNA-1:exon:19786;Parent=Msa0473330-mRNA-1
chr3_3	five_prime_UTR	75914500	75914672	75914500	ID=Msa0473330-mRNA-1:five_prime_utr;Parent=Msa0473330-mRNA-1
chr3_3	CDS	75914673	75914891	75914673	ID=Msa0473330-mRNA-1:cds;Parent=Msa0473330-mRNA-1
chr3_3	CDS	75915409	75915465	75915409	ID=Msa0473330-mRNA-1:cds;Parent=Msa0473330-mRNA-1
chr3_3	CDS	75915845	75915880	75915845	ID=Msa0473330-mRNA-1:cds;Parent=Msa0473330-mRNA-1
chr3_3	CDS	75916029	75916748	75916029	ID=Msa0473330-mRNA-1:cds;Parent=Msa0473330-mRNA-1
chr3_3	CDS	75917340	75917906	75917340	ID=Msa0473330-mRNA-1:cds;Parent=Msa0473330-mRNA-1
chr3_3	three_prime_UTR	75917907	75918132	75917907	ID=Msa0473330-mRNA-1:three_prime_utr;Parent=Msa0473330-mRNA-1

Gene Sequence

>Msa0473330

ATGGCTGAGATCGACACTTGTTCCAAGAACAAGGCAGGTTTGGAAATTTGCGAAACCAATTCGTATAATTCATCGCAATTACAAAGAACTAAACTTAAAGGGAAGGGAATAGCGTGCAAACGACGAAACCCTAGAGTCTCTGTTCGTCGCACAAGGGGTAATAATGTTGCAGCTATTGGGTTTCCTCTTGGAATGTCGGTCGCCGCTGTTATGGCTCAGGTGTTGTACAGAAGAGATGCAGCAGCTGAGAGTGTGTCTCCAGATCATCTTTCGTCGATGTGCACATCTGCGATCCAAGAATCTCTATCCAGTGTATTTGGAGACAAGCTAGATGGTTTGACAAGGAACTTTGAGCAATCTTTTGACAGCACTTTGAGTACTCTTCGATTAATTTATGAATCATCGGCTAGCAATGAAGGGAATAAATTGAATAATATGAGGTTGGAAATTCCAAGTTCTAAATTTATCAGAGGAGATTGCTCACGTGATATTGCTATAGAGGATGATCAACCAGGGCTACTATCACACGCACACGCCGAAATCGTAGATCAATCAATTAGTCGTGAAGAGGTTGGGGATAACTTCCACATGGAGTCAGTTACTCGTGATATTGCTTTGCGTGGGCAGTCAAACCAAATGGTTTGTTTCGCTCCACCCTCTTCTGGAGCTTTAGCTAATAATCCAGTATTTGAGAAGTCTATTATGGAGCAATGCCGTTCTAATGACCTCAAGACTGTTGAACTTGGTCTTACAATGAAAAAAATGAAATTGAAAGAGACAGAATTGGCTCTCAGATATGATTTAAATGATCTGCAGAGATCCAAGTTAGCTGTGGATATATCAAAGACATCATTCAAAGCTGAAAAGTTTAAGACTCAGTTAGAAGATACAAGATATGGTGAACTGAATAAGAAGTGCATAGACTGTCTTATTGCTGGTCTGTTCATTATGTCATCCTCACTTTTTTATGGTGCTTATGTTTATAACTTTGAACGGATTAATGAAGCTGCTGGATCATGTACTCCAGAAGAGGAACCTTCCTACTGGTGGACTCCAAAGTCAGTGACCTGGTTAAATTCAAGTGTGCATGTTTTTTTTTGTCAAGTTCGAGTTGTGAGCCGAATGGTGTTTGGTTTCTTAATGATTATTGTTGTTGGGTATCTGCTCTTCCAACGGTCAGCAACATTGTCATCACAAACTATGCCAGTTACTTTCATCATATTGATGCTAGGAATCGGCTGTGGCTATTGTGGAACCATGTGTATAGACACACTGGGAGGAAGTGGTTACATTTGGCTCTTATATTGGGAGATTCTGTGTTTGGTGCATTTCTTATCTATATGCTGGACATCCGCTTTGTACGCAATCCTTCACGGACCAATCACAACACTGCAGACAAAGAAAGGGGATCCAATTGTCCAGTATTGGATTCGCCGGTTTCTTTTCTATGCTATTTTGCTTGTGGTTCTACCATTGTGTTGTGGTCTTCTGCCTTTTGCTAGCTTAGGTCAATGGAAAGACCATTTTATGTCGAAGGTATTTGATGACCAAGGATCAGTTATGTCGACGGTGTTTGATGACCAAGGATTAGAATTGTAA

Protein sequence

>Msa0473330

MAEIDTCSKNKAGLEICETNSYNSSQLQRTKLKGKGIACKRRNPRVSVRRTRGNNVAAIGFPLGMSVAAVMAQVLYRRDAAAESVSPDHLSSMCTSAIQESLSSVFGDKLDGLTRNFEQSFDSTLSTLRLIYESSASNEGNKLNNMRLEIPSSKFIRGDCSRDIAIEDDQPGLLSHAHAEIVDQSISREEVGDNFHMESVTRDIALRGQSNQMVCFAPPSSGALANNPVFEKSIMEQCRSNDLKTVELGLTMKKMKLKETELALRYDLNDLQRSKLAVDISKTSFKAEKFKTQLEDTRYGELNKKCIDCLIAGLFIMSSSLFYGAYVYNFERINEAAGSCTPEEEPSYWWTPKSVTWLNSSVHVFFCQVRVVSRMVFGFLMIIVVGYLLFQRSATLSSQTMPVTFIILMLGIGCGYCGTMCIDTLGGSGYIWLLYWEILCLVHFLSICWTSALYAILHGPITTLQTKKGDPIVQYWIRRFLFYAILLVVLPLCCGLLPFASLGQWKDHFMSKVFDDQGSVMSTVFDDQGLEL*