AlfalfaGEDB | Msa1134660

M. sativa cultivar zhongmu-4 / Msa1134660

KEGG: -
GO: GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134660	XP_013447433.1	97.826	230	5	0	1	230	1	230	1.63e-160	453

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134660	sp\|A7PW81\|PGIP_VITVI	45.550	191	99	2	32	222	24	209	1.41e-45	157

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134660	A0A072TVI1	97.826	230	5	0	1	230	1	230	7.77e-161	453

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0329620	Msa1134660	0.807975	3.886882e-50	-8.615850e-47
Msa0359250	Msa1134660	0.815397	9.441603e-52	-8.615850e-47
Msa0406000	Msa1134660	0.820797	5.672223e-53	-8.615850e-47
Msa0424340	Msa1134660	0.808646	2.795609e-50	-8.615850e-47
Msa0451400	Msa1134660	0.836090	1.147199e-56	-8.615850e-47
Msa0492190	Msa1134660	0.800258	1.567768e-48	-8.615850e-47
Msa0669840	Msa1134660	0.817145	3.838070e-52	-8.615850e-47
Msa1005360	Msa1134660	0.819130	1.365141e-52	-8.615850e-47
Msa1047290	Msa1134660	0.851594	8.019409e-61	-8.615850e-47
Msa1134660	Msa1228190	0.808568	2.905013e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134660	MtrunA17_Chr7g0215171	97.768	224	5	0	7	230	1	224	1.51e-159	440
Msa1134660	MtrunA17_Chr7g0227211	80.513	195	38	0	23	217	14	208	8.92e-107	311
Msa1134660	MtrunA17_Chr7g0227231	79.592	196	39	1	23	217	56	251	1.45e-104	308
Msa1134660	MtrunA17_Chr7g0222841	43.750	208	108	4	24	229	20	220	1.45e-49	161
Msa1134660	MtrunA17_Chr7g0222861	43.269	208	109	4	25	230	21	221	2.12e-47	156
Msa1134660	MtrunA17_Chr7g0222871	43.434	198	102	5	35	229	32	222	7.25e-46	152
Msa1134660	MtrunA17_Chr7g0222881	43.434	198	102	5	35	229	32	222	1.15e-45	151
Msa1134660	MtrunA17_Chr7g0222901	43.655	197	101	5	35	228	32	221	8.54e-45	149
Msa1134660	MtrunA17_Chr3g0093121	43.541	209	111	4	25	229	21	226	1.77e-43	146
Msa1134660	MtrunA17_Chr7g0222921	39.234	209	113	4	3	210	6	201	8.06e-43	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134660	AT5G06860.1	45.402	174	92	2	38	211	25	195	7.23e-43	147
Msa1134660	AT5G06860.1	31.633	196	81	7	82	229	140	330	1.82e-14	71.6
Msa1134660	AT5G06870.1	45.161	186	99	2	38	223	25	207	1.29e-39	139
Msa1134660	AT5G06870.1	31.737	167	87	6	86	229	168	330	6.00e-11	61.6
Msa1134660	AT3G12145.1	39.713	209	115	4	15	222	4	202	3.14e-36	130
Msa1134660	AT2G26380.1	34.000	200	117	2	32	216	23	222	7.84e-30	115
Msa1134660	AT2G26380.1	34.965	143	68	4	82	200	173	314	3.41e-14	71.6
Msa1134660	AT1G33600.1	34.091	220	126	5	7	218	1	209	6.60e-27	107
Msa1134660	AT1G33600.1	37.903	124	71	4	94	213	206	327	7.11e-13	67.8
Msa1134660	AT1G33600.2	34.091	220	126	5	7	218	1	209	6.60e-27	107

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Find 106 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGAAGGTTAAGGAG+GGG	0.550413	7_4:+1304272	None:intergenic
AAAGTAATCAGGGATAGGAC+CGG	0.619429	7_4:+1303895	None:intergenic
AAGAGGATGTGGGACATGGA+TGG	0.467106	7_4:+1304325	None:intergenic
AAGATGAGGCAATTTCGCAA+TGG	0.619474	7_4:+1303949	None:intergenic
AAGCCCTAAGGTGGCTAAAT+TGG	0.285717	7_4:+1303862	None:intergenic
AAGGATGGAGGGAAGTTGCA+AGG	0.560111	7_4:-1303737	Msa1134660:CDS
AATATTAGGGTTTCCAGGTA+TGG	0.454094	7_4:+1304010	None:intergenic
AATGGCTTGAGGGATAGGAC+CGG	0.654849	7_4:+1303967	None:intergenic
AATGGTCTTTGATCTTGAGG+AGG	0.643751	7_4:+1304203	None:intergenic
ACATCTAGGCCTACAAGCTT+AGG	0.453360	7_4:+1303791	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAACAGATTGTTGCAAA+TGG	-	chr7_4:1303857-1303876	Msa1134660:CDS	30.0%
TTATTATTCTCAAACCACGA+CGG	+	chr7_4:1304300-1304319	None:intergenic	30.0%
GAGAATAATAAGTGTTTGTG+TGG	-	chr7_4:1304309-1304328	Msa1134660:CDS	30.0%
AATATTAGGGTTTCCAGGTA+TGG	+	chr7_4:1303997-1304016	None:intergenic	35.0%
TTGCTAAAGTAATCAGGGAT+AGG	+	chr7_4:1304117-1304136	None:intergenic	35.0%
ATAACAACCATTTAACCGGT+CGG	-	chr7_4:1304166-1304185	Msa1134660:CDS	35.0%
AAAGAGAGAAGGTTAAGGAG+GGG	+	chr7_4:1303735-1303754	None:intergenic	40.0%
GAAAGAGAGAAGGTTAAGGA+GGG	+	chr7_4:1303736-1303755	None:intergenic	40.0%
AGAAAGAGAGAAGGTTAAGG+AGG	+	chr7_4:1303737-1303756	None:intergenic	40.0%
TGGAGAAAGAGAGAAGGTTA+AGG	+	chr7_4:1303740-1303759	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	1303667	1304359	1303667	ID=Msa1134660;Name=Msa1134660
chr7_4	mRNA	1303667	1304359	1303667	ID=Msa1134660-mRNA-1;Parent=Msa1134660;Name=Msa1134660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|230
chr7_4	exon	1303667	1304359	1303667	ID=Msa1134660-mRNA-1:exon:517;Parent=Msa1134660-mRNA-1
chr7_4	CDS	1303667	1304359	1303667	ID=Msa1134660-mRNA-1:cds;Parent=Msa1134660-mRNA-1

Gene Sequence

>Msa1134660

ATGGAGAGAAACCCATCCATGTCCCACATCCTCTTCCCCTCCTTCCTCCTCCTTCTCCTCTTCCTCCCCTCCTTAACCTTCTCTCTTTCTCCACCACCACGCCGACACCACTGCCACCCCGACGACCAAAATGTCCTCCTCAAGATCAAAGACCATTTCCACAATACAAGCCTCTTCTCAACATGGACTCCAAAAACAGATTGTTGCAAATGGCGCATAGTCTTATGCAAGAAAATCCCTAAAACCACAATCTACCGTGTCAACTTCCTCGAGATCGACGGTGCTGATGACCTAGTCGGTACGATCCCACCACTCATTGCTGACCTACCATACCTGGAAACCCTAATATTCCGCAACCTCCCTAACCTCACCGGTCCTATCCCTCAAGCCATTGCGAAATTGCCTCATCTTAACTTCGTCCTCCTTAACTGGAACAGTCTAACCGGTCCTATCCCTGATTACTTTAGCAAGCTCACCAATTTAGCCACCTTAGGGCTTAATAACAACCATTTAACCGGTCGGGTTCCGGCTTACCTCGGCCACCTTCCTAAGCTTGTAGGCCTAGATGTGAGCCACAACCAGCTTTGTGGTCCTATACCAAAGGATGGAGGGAAGTTGCAAGGGTTTGATCCGTCGTGGTTTGAGAATAATAAGTGTTTGTGTGGTGCTCCCTTGGCCCCTTGCAAGGCCTAG

Protein sequence

>Msa1134660

MERNPSMSHILFPSFLLLLLFLPSLTFSLSPPPRRHHCHPDDQNVLLKIKDHFHNTSLFSTWTPKTDCCKWRIVLCKKIPKTTIYRVNFLEIDGADDLVGTIPPLIADLPYLETLIFRNLPNLTGPIPQAIAKLPHLNFVLLNWNSLTGPIPDYFSKLTNLATLGLNNNHLTGRVPAYLGHLPKLVGLDVSHNQLCGPIPKDGGKLQGFDPSWFENNKCLCGAPLAPCKA*