Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136910 | XP_013449696.1 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136910 | sp|Q9M8J9|BPM2_ARATH | 72.772 | 404 | 110 | 0 | 7 | 410 | 2 | 405 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136910 | A0A072U1Y3 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611220 | Msa1136910 | 0.813073 | 3.078817e-51 | -8.615850e-47 |
| Msa0744010 | Msa1136910 | -0.806803 | 6.888278e-50 | -8.615850e-47 |
| Msa0788160 | Msa1136910 | -0.803942 | 2.740363e-49 | -8.615850e-47 |
| Msa0789130 | Msa1136910 | 0.827685 | 1.364916e-54 | -8.615850e-47 |
| Msa0825360 | Msa1136910 | -0.813177 | 2.920448e-51 | -8.615850e-47 |
| Msa0177320 | Msa1136910 | 0.805688 | 1.182753e-49 | -8.615850e-47 |
| Msa0462450 | Msa1136910 | 0.806298 | 8.804035e-50 | -8.615850e-47 |
| Msa1116970 | Msa1136910 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa1136910 | Msa1136960 | 0.844908 | 5.648473e-59 | -8.615850e-47 |
| Msa1136910 | Msa1328240 | 0.801287 | 9.669976e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136910 | MtrunA17_Chr7g0259501 | 100.000 | 410 | 0 | 0 | 1 | 410 | 1 | 410 | 0.0 | 855 |
| Msa1136910 | MtrunA17_Chr1g0185861 | 86.957 | 414 | 50 | 1 | 1 | 410 | 1 | 414 | 0.0 | 726 |
| Msa1136910 | MtrunA17_Chr5g0440341 | 58.312 | 391 | 146 | 6 | 29 | 409 | 23 | 406 | 7.98e-161 | 458 |
| Msa1136910 | MtrunA17_Chr7g0254001 | 57.702 | 383 | 154 | 4 | 32 | 409 | 13 | 392 | 1.03e-148 | 428 |
| Msa1136910 | MtrunA17_Chr4g0002921 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 2.43e-75 | 238 |
| Msa1136910 | MtrunA17_Chr3g0112351 | 56.989 | 93 | 40 | 0 | 258 | 350 | 6 | 98 | 9.98e-31 | 114 |
| Msa1136910 | MtrunA17_Chr1g0205751 | 31.288 | 163 | 92 | 3 | 187 | 344 | 517 | 664 | 5.39e-17 | 83.2 |
| Msa1136910 | MtrunA17_Chr5g0394261 | 31.902 | 163 | 91 | 3 | 187 | 344 | 514 | 661 | 7.58e-17 | 82.8 |
| Msa1136910 | MtrunA17_Chr7g0259851 | 27.389 | 157 | 97 | 3 | 189 | 344 | 511 | 651 | 1.59e-14 | 75.5 |
| Msa1136910 | MtrunA17_Chr3g0125321 | 29.012 | 162 | 98 | 4 | 220 | 379 | 97 | 243 | 5.51e-13 | 68.6 |
| Msa1136910 | MtrunA17_Chr1g0159831 | 24.233 | 326 | 199 | 9 | 31 | 344 | 4 | 293 | 1.03e-11 | 65.9 |
| Msa1136910 | MtrunA17_Chr3g0103031 | 27.815 | 151 | 94 | 3 | 197 | 345 | 155 | 292 | 1.31e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136910 | AT3G06190.1 | 72.772 | 404 | 110 | 0 | 7 | 410 | 2 | 405 | 0.0 | 629 |
| Msa1136910 | AT5G19000.1 | 73.067 | 375 | 101 | 0 | 36 | 410 | 32 | 406 | 0.0 | 594 |
| Msa1136910 | AT5G19000.3 | 73.067 | 375 | 101 | 0 | 36 | 410 | 32 | 406 | 0.0 | 594 |
| Msa1136910 | AT5G19000.2 | 66.829 | 410 | 101 | 1 | 36 | 410 | 32 | 441 | 0.0 | 577 |
| Msa1136910 | AT3G06190.5 | 72.832 | 346 | 94 | 0 | 7 | 352 | 2 | 347 | 0.0 | 543 |
| Msa1136910 | AT2G39760.1 | 63.714 | 350 | 127 | 0 | 29 | 378 | 16 | 365 | 2.45e-172 | 488 |
| Msa1136910 | AT2G39760.4 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 8.48e-159 | 451 |
| Msa1136910 | AT2G39760.3 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 8.48e-159 | 451 |
| Msa1136910 | AT3G03740.1 | 59.259 | 378 | 143 | 4 | 5 | 378 | 18 | 388 | 1.90e-158 | 455 |
| Msa1136910 | AT2G39760.2 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 2.05e-158 | 450 |
| Msa1136910 | AT3G43700.1 | 52.506 | 419 | 183 | 7 | 1 | 409 | 1 | 413 | 9.25e-150 | 431 |
| Msa1136910 | AT5G21010.1 | 52.998 | 417 | 175 | 6 | 5 | 409 | 1 | 408 | 3.55e-148 | 427 |
| Msa1136910 | AT3G43700.3 | 55.742 | 357 | 145 | 6 | 1 | 350 | 1 | 351 | 2.32e-138 | 400 |
| Msa1136910 | AT3G43700.2 | 54.972 | 362 | 150 | 6 | 1 | 355 | 1 | 356 | 2.34e-138 | 400 |
| Msa1136910 | AT3G06190.3 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 9.14e-134 | 386 |
| Msa1136910 | AT3G06190.4 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 1.60e-133 | 385 |
| Msa1136910 | AT3G06190.2 | 69.231 | 260 | 79 | 1 | 7 | 265 | 2 | 261 | 4.63e-130 | 376 |
| Msa1136910 | AT3G06190.2 | 60.714 | 56 | 22 | 0 | 355 | 410 | 239 | 294 | 1.32e-13 | 71.2 |
| Msa1136910 | AT5G19330.1 | 30.675 | 163 | 93 | 3 | 187 | 344 | 519 | 666 | 2.76e-18 | 87.8 |
| Msa1136910 | AT5G13060.1 | 25.907 | 193 | 125 | 4 | 193 | 384 | 557 | 732 | 2.03e-14 | 75.9 |
| Msa1136910 | AT1G55760.1 | 28.188 | 149 | 96 | 3 | 197 | 345 | 154 | 291 | 7.74e-11 | 63.5 |
Find 138 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGGGTTTGGTACGATTT+TGG | 0.100646 | 7_4:-5627149 | None:intergenic |
| TGATTTGGGGTATTGATTTA+AGG | 0.129136 | 7_4:-5627240 | None:intergenic |
| TTCGATCGATGCGGGAAATT+AGG | 0.136333 | 7_4:-5627266 | None:intergenic |
| CAGAAAGGCAATCATCTTTA+AGG | 0.151802 | 7_4:-5628661 | None:intergenic |
| AAAACATCTGTTTGAAAGTA+TGG | 0.178691 | 7_4:+5630570 | Msa1136910:three_prime_UTR |
| TAACGAAATCTGTCAGATTT+TGG | 0.210853 | 7_4:-5627182 | None:intergenic |
| GGGAAATTAGGGTATGATTT+GGG | 0.266773 | 7_4:-5627254 | None:intergenic |
| TTTCGGTTGGTGGGTACGAC+TGG | 0.267781 | 7_4:+5627567 | Msa1136910:CDS |
| GCTCTCACTGTCATTTAAAA+AGG | 0.273499 | 7_4:-5630384 | None:intergenic |
| TCGATCGATGCGGGAAATTA+GGG | 0.285108 | 7_4:-5627265 | None:intergenic |
| TCTAACATTGGTCACCAATT+TGG | 0.290090 | 7_4:+5628755 | Msa1136910:CDS |
| ATTGCAATGGAATATATCTT+TGG | 0.297756 | 7_4:-5628725 | None:intergenic |
| TTTCCAGCAGTTGACCAAAT+TGG | 0.308262 | 7_4:-5628769 | None:intergenic |
| CTTGATGGTAGCGACATAAA+TGG | 0.313292 | 7_4:+5630289 | Msa1136910:CDS |
| TTACTGGGATGAACACAAAA+TGG | 0.317610 | 7_4:+5629287 | Msa1136910:CDS |
| GGAGGATGATGATCGTTTAT+AGG | 0.319361 | 7_4:+5630418 | Msa1136910:three_prime_UTR |
| GATTTGGGGTATTGATTTAA+GGG | 0.322743 | 7_4:-5627239 | None:intergenic |
| AGTTGTAGCCACGGTATTAA+TGG | 0.325761 | 7_4:-5629410 | None:intergenic |
| TTTGGTCAACTGCTGGAAAA+TGG | 0.327985 | 7_4:+5628773 | Msa1136910:CDS |
| GTGCGAGCCTTTCACTGTTT+CGG | 0.338988 | 7_4:-5627474 | None:intergenic |
| CCTGACATGCAAGAGCTTAC+TGG | 0.346812 | 7_4:+5629271 | Msa1136910:CDS |
| CTTTCAAAGGGGATCGGGAT+TGG | 0.349830 | 7_4:+5627521 | Msa1136910:CDS |
| CGGGAAATTAGGGTATGATT+TGG | 0.350045 | 7_4:-5627255 | None:intergenic |
| TCCATCAGGGTAGAAATAAA+TGG | 0.352142 | 7_4:-5627591 | None:intergenic |
| AGGGTTTGATTAAGAAATCT+AGG | 0.360066 | 7_4:-5627212 | None:intergenic |
| TTCATTGCGCTTGCGAGTGA+TGG | 0.366715 | 7_4:+5627650 | Msa1136910:CDS |
| TTTCAAAGGGGATCGGGATT+GGG | 0.367398 | 7_4:+5627522 | Msa1136910:CDS |
| GGTGCTGTTACTGTTCTGTT+AGG | 0.368107 | 7_4:+5630509 | Msa1136910:three_prime_UTR |
| GAAGATGAAATTCTAGGGTT+TGG | 0.377945 | 7_4:-5627160 | None:intergenic |
| CCGCGGTATTTCAAGGTATA+AGG | 0.381273 | 7_4:-5627773 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 7_4:-5629271 | None:intergenic |
| TCCTCAACACTCTTTCCATC+AGG | 0.388296 | 7_4:-5627605 | None:intergenic |
| ATCTGTTCTGACTGAGCTAC+TGG | 0.388739 | 7_4:+5630204 | Msa1136910:CDS |
| TTTCAAGAGTCCTCTCAAAA+TGG | 0.393526 | 7_4:-5627745 | None:intergenic |
| TGAAGTATTTGTTGAAATGA+AGG | 0.395823 | 7_4:-5627291 | None:intergenic |
| TGTCTTCAACTTTAATAGAC+TGG | 0.397130 | 7_4:-5628919 | None:intergenic |
| GCCTTTCACTGTTTCGGTGA+TGG | 0.397678 | 7_4:-5627468 | None:intergenic |
| AAAATGGGCAACAACCTTGA+TGG | 0.400210 | 7_4:+5629303 | Msa1136910:CDS |
| TTGCAATGGAATATATCTTT+GGG | 0.415668 | 7_4:-5628724 | None:intergenic |
| AAAAGCTGGGCTCTGAAAAC+AGG | 0.418885 | 7_4:-5628872 | None:intergenic |
| AAGATGGTTTCGCGGTTTCT+CGG | 0.425427 | 7_4:-5627391 | None:intergenic |
| CTTTCCCACTCTGATCCAAA+AGG | 0.428484 | 7_4:-5627703 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.429590 | 7_4:+5630234 | Msa1136910:CDS |
| TATAAGCCTGAGCCTCTCTA+AGG | 0.439005 | 7_4:-5629359 | None:intergenic |
| CATCATCCTCCCTCTAACTA+AGG | 0.445110 | 7_4:-5630406 | None:intergenic |
| ACTCGCTTTCAAAGGGGATC+GGG | 0.445344 | 7_4:+5627516 | Msa1136910:CDS |
| CTTTCTGTTAATTGTAGTGT+TGG | 0.448249 | 7_4:+5628677 | Msa1136910:CDS |
| GCCATTTATTTCTACCCTGA+TGG | 0.449168 | 7_4:+5627590 | Msa1136910:CDS |
| GATGAGGAAGATGGCGATGA+TGG | 0.450032 | 7_4:-5627419 | None:intergenic |
| CATACTACCGCGGTATTTCA+AGG | 0.451447 | 7_4:-5627780 | None:intergenic |
| CGACGAAGTTGTCGCCGGTT+CGG | 0.453320 | 7_4:-5627441 | None:intergenic |
| TCGCACCAGTTCAAGATCAC+TGG | 0.462687 | 7_4:+5627491 | Msa1136910:CDS |
| TGATGGATTTGAGTACTTGA+AGG | 0.465111 | 7_4:+5630171 | Msa1136910:CDS |
| TCTTTACAGTGGCTCTCGCA+TGG | 0.469657 | 7_4:+5627358 | Msa1136910:exon |
| TCACCAATTTGGTCAACTGC+TGG | 0.470708 | 7_4:+5628766 | Msa1136910:CDS |
| TGAAGGAATTCGATCGATGC+GGG | 0.472438 | 7_4:-5627274 | None:intergenic |
| CTGACATGCAAGAGCTTACT+GGG | 0.474237 | 7_4:+5629272 | Msa1136910:CDS |
| ACAGTGAGAGCCTTAGTTAG+AGG | 0.476215 | 7_4:+5630396 | Msa1136910:three_prime_UTR |
| AATTGGTGACCAATGTTAGA+AGG | 0.476229 | 7_4:-5628752 | None:intergenic |
| TTCGGTTGGTGGGTACGACT+GGG | 0.480343 | 7_4:+5627568 | Msa1136910:CDS |
| AGCAGCCGCTAGAAGATGTT+GGG | 0.482623 | 7_4:-5629326 | None:intergenic |
| GGTATTGATTTAAGGGAATG+AGG | 0.484976 | 7_4:-5627232 | None:intergenic |
| GCCATCTTCCTCATCCGAAC+CGG | 0.485420 | 7_4:+5627427 | Msa1136910:CDS |
| TCATTGCGCTTGCGAGTGAT+GGG | 0.488038 | 7_4:+5627651 | Msa1136910:CDS |
| TTGATGGTAGCGACATAAAT+GGG | 0.492627 | 7_4:+5630290 | Msa1136910:CDS |
| TGAGACAGACTGCTTTCAGC+TGG | 0.493739 | 7_4:-5629462 | None:intergenic |
| CACTGGGTACTCGCTTTCAA+AGG | 0.497134 | 7_4:+5627508 | Msa1136910:CDS |
| ACTGGGTACTCGCTTTCAAA+GGG | 0.502570 | 7_4:+5627509 | Msa1136910:CDS |
| GTATTGATTTAAGGGAATGA+GGG | 0.508588 | 7_4:-5627231 | None:intergenic |
| GGCGATGATGGATTTGAAGA+TGG | 0.510513 | 7_4:-5627407 | None:intergenic |
| TACTCGCTTTCAAAGGGGAT+CGG | 0.513011 | 7_4:+5627515 | Msa1136910:CDS |
| CGTGGCTACAACTTTAGCCT+TGG | 0.515788 | 7_4:+5629420 | Msa1136910:CDS |
| GTTATGCCTTAGAGAGGCTC+AGG | 0.515843 | 7_4:+5629353 | Msa1136910:CDS |
| AGTTGTCGCCGGTTCGGATG+AGG | 0.516664 | 7_4:-5627435 | None:intergenic |
| AGTAGCTCAGTCAGAACAGA+TGG | 0.522563 | 7_4:-5630202 | None:intergenic |
| GTCTTCAACTTTAATAGACT+GGG | 0.522594 | 7_4:-5628918 | None:intergenic |
| GCAAAGGCTTTAGTTTGAAG+TGG | 0.525605 | 7_4:+5630324 | Msa1136910:exon |
| GCCGGTTCGGATGAGGAAGA+TGG | 0.527058 | 7_4:-5627428 | None:intergenic |
| AGTACCCAGTGATCTTGAAC+TGG | 0.527135 | 7_4:-5627496 | None:intergenic |
| AGGAATGAAGCAATACTTGA+TGG | 0.534209 | 7_4:+5630274 | Msa1136910:CDS |
| TCAGCTGTGATGCAAACTGA+TGG | 0.535341 | 7_4:+5630154 | Msa1136910:intron |
| CAGCAGCCGCTAGAAGATGT+TGG | 0.535413 | 7_4:-5629327 | None:intergenic |
| CTTTACAGTGGCTCTCGCAT+GGG | 0.537002 | 7_4:+5627359 | Msa1136910:exon |
| TACTGGGATGAACACAAAAT+GGG | 0.538886 | 7_4:+5629288 | Msa1136910:CDS |
| ATGTGAGCTTTGAAGTGGAT+GGG | 0.539335 | 7_4:+5628807 | Msa1136910:CDS |
| GGGTTTGATTAAGAAATCTA+GGG | 0.545134 | 7_4:-5627211 | None:intergenic |
| TGTGTAAATGTAATTTGTGT+TGG | 0.547276 | 7_4:+5630488 | Msa1136910:three_prime_UTR |
| TTTGAGAGGACTCTTGAAAG+TGG | 0.547746 | 7_4:+5627749 | Msa1136910:CDS |
| TAGAAGATGTTGGGCCATCA+AGG | 0.550820 | 7_4:-5629317 | None:intergenic |
| CAGTGAGAGCCTTAGTTAGA+GGG | 0.551817 | 7_4:+5630397 | Msa1136910:three_prime_UTR |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 7_4:+5627715 | Msa1136910:CDS |
| TGGGTACTTTGATCTCTCAT+AGG | 0.553110 | 7_4:-5628899 | None:intergenic |
| GGAAATTAGGGTATGATTTG+GGG | 0.557178 | 7_4:-5627253 | None:intergenic |
| CAACTGCTGGAAAATGGTAA+AGG | 0.557886 | 7_4:+5628779 | Msa1136910:CDS |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 7_4:+5627708 | Msa1136910:CDS |
| CAACACTACAATTAACAGAA+AGG | 0.560566 | 7_4:-5628676 | None:intergenic |
| TGAAATACCGCGGTAGTATG+TGG | 0.562660 | 7_4:+5627783 | Msa1136910:CDS |
| AACTCTCGATTTCTTTACAG+TGG | 0.563805 | 7_4:+5627347 | Msa1136910:five_prime_UTR |
| CGCACCAGTTCAAGATCACT+GGG | 0.564063 | 7_4:+5627492 | Msa1136910:CDS |
| TTTCCCACTCTGATCCAAAA+GGG | 0.564821 | 7_4:-5627702 | None:intergenic |
| GTTGTGAGGTCACGCACGGA+AGG | 0.565111 | 7_4:+5628701 | Msa1136910:CDS |
| GCAATACCACCTTCTAACAT+TGG | 0.569252 | 7_4:+5628743 | Msa1136910:CDS |
| ATTGTAGTGTTGGTGTTGTG+AGG | 0.569688 | 7_4:+5628687 | Msa1136910:CDS |
| TGGATTTGAAGATGGTTTCG+CGG | 0.577032 | 7_4:-5627399 | None:intergenic |
| GTTAGAAGGTGGTATTGCAA+TGG | 0.578466 | 7_4:-5628738 | None:intergenic |
| TAGCGACATAAATGGGAGGC+GGG | 0.581746 | 7_4:+5630297 | Msa1136910:CDS |
| ACAGTGGTGTTGCTCTGCCA+AGG | 0.585829 | 7_4:-5629437 | None:intergenic |
| ATGGGAGGCGGGTGAAGCAA+AGG | 0.586155 | 7_4:+5630308 | Msa1136910:CDS |
| GTCTATTAAAGTTGAAGACA+TGG | 0.587011 | 7_4:+5628922 | Msa1136910:CDS |
| GTAGCGACATAAATGGGAGG+CGG | 0.587515 | 7_4:+5630296 | Msa1136910:CDS |
| CCTCAACACTCTTTCCATCA+GGG | 0.588059 | 7_4:-5627604 | None:intergenic |
| AAACACAGAAAATGAAATGA+CGG | 0.591047 | 7_4:-5627092 | None:intergenic |
| CGCAATGAAAAGCGACACAT+AGG | 0.595341 | 7_4:-5627636 | None:intergenic |
| TGTGAGCTTTGAAGTGGATG+GGG | 0.599589 | 7_4:+5628808 | Msa1136910:CDS |
| CTGCTTTCAGCTGGAAACAG+TGG | 0.607188 | 7_4:-5629453 | None:intergenic |
| GATGTGAGCTTTGAAGTGGA+TGG | 0.611734 | 7_4:+5628806 | Msa1136910:CDS |
| TGTGTTTCAGGGGTTACAAG+CGG | 0.617806 | 7_4:+5628603 | Msa1136910:intron |
| CAAGGCTAAAGTTGTAGCCA+CGG | 0.622185 | 7_4:-5629419 | None:intergenic |
| TCCATCACCGAAACAGTGAA+AGG | 0.625558 | 7_4:+5627467 | Msa1136910:CDS |
| GATGTCGACGAAGTTGTCGC+CGG | 0.628940 | 7_4:-5627446 | None:intergenic |
| AAGTGATGTGAGCTTTGAAG+TGG | 0.629597 | 7_4:+5628802 | Msa1136910:CDS |
| CCCTGATGGAAAGAGTGTTG+AGG | 0.639733 | 7_4:+5627604 | Msa1136910:CDS |
| CTGATCGTTATGCCTTAGAG+AGG | 0.645940 | 7_4:+5629347 | Msa1136910:CDS |
| TGGTGACCAATGTTAGAAGG+TGG | 0.651217 | 7_4:-5628749 | None:intergenic |
| TGGTGTTGTGAGGTCACGCA+CGG | 0.652634 | 7_4:+5628697 | Msa1136910:CDS |
| ATGAAGGAATTCGATCGATG+CGG | 0.653909 | 7_4:-5627275 | None:intergenic |
| GATTGGGAAATACATAGCGT+CGG | 0.657071 | 7_4:+5627538 | Msa1136910:CDS |
| TGAGAGCCTTAGTTAGAGGG+AGG | 0.659560 | 7_4:+5630400 | Msa1136910:three_prime_UTR |
| GTAGCTCAGTCAGAACAGAT+GGG | 0.683418 | 7_4:-5630201 | None:intergenic |
| CTGGGTACTCGCTTTCAAAG+GGG | 0.684078 | 7_4:+5627510 | Msa1136910:CDS |
| GACTGAGCTACTGGAGTACG+TGG | 0.688714 | 7_4:+5630213 | Msa1136910:CDS |
| CCTTATACCTTGAAATACCG+CGG | 0.699018 | 7_4:+5627773 | Msa1136910:CDS |
| GATGGCCCAACATCTTCTAG+CGG | 0.704220 | 7_4:+5629321 | Msa1136910:CDS |
| GCCACCTCTGAAAATCTCAG+AGG | 0.704264 | 7_4:+5629493 | Msa1136910:CDS |
| ATGGTAGCGACATAAATGGG+AGG | 0.709241 | 7_4:+5630293 | Msa1136910:CDS |
| TATTAAAGTTGAAGACATGG+AGG | 0.710382 | 7_4:+5628925 | Msa1136910:CDS |
| AGATGTCGCCATTAATACCG+TGG | 0.713502 | 7_4:+5629402 | Msa1136910:CDS |
| GAGCTTACCACATACTACCG+CGG | 0.744761 | 7_4:-5627790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGATTTCATTTTTATTT+TGG | + | chr7_4:5627834-5627853 | Msa1136910:intron | 10.0% |
| !!! | TCATTTTATCGAATTATTAT+CGG | + | chr7_4:5628315-5628334 | Msa1136910:intron | 15.0% |
| !! | TTAAATAAAACCTTAAAAAC+TGG | - | chr7_4:5628953-5628972 | None:intergenic | 15.0% |
| !! | TTAATATCTTAAATATGTAC+AGG | + | chr7_4:5628981-5629000 | Msa1136910:intron | 15.0% |
| !!! | ACTAATTTAACTTTGAATAA+TGG | - | chr7_4:5629638-5629657 | None:intergenic | 15.0% |
| !!! | CTGAACTATTTTTATTATTT+TGG | + | chr7_4:5630127-5630146 | Msa1136910:intron | 15.0% |
| !!! | GATTTCATTTTTATTTTGGT+TGG | + | chr7_4:5627838-5627857 | Msa1136910:intron | 20.0% |
| !!! | TTCTTTTTATTGATTTGATG+AGG | + | chr7_4:5629037-5629056 | Msa1136910:intron | 20.0% |
| !! | GTTGTGTAATTATTTACAAA+AGG | - | chr7_4:5629082-5629101 | None:intergenic | 20.0% |
| !! | ATAATTACACAACAACTATT+TGG | + | chr7_4:5629089-5629108 | Msa1136910:intron | 20.0% |
| !! | AAATTAGTAGTAAATGGAAA+AGG | - | chr7_4:5629774-5629793 | None:intergenic | 20.0% |
| !! | ATGAAGAATAAAAAAAGGTT+GGG | - | chr7_4:5630088-5630107 | None:intergenic | 20.0% |
| !!! | TTTTGGAAGATGAAATTCTA+GGG | - | chr7_4:5627168-5627187 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAGATGAAATTCT+AGG | - | chr7_4:5627169-5627188 | None:intergenic | 25.0% |
| !! | TGAAGTATTTGTTGAAATGA+AGG | - | chr7_4:5627294-5627313 | None:intergenic | 25.0% |
| !! | TTGGATTATGTTTTCCATAT+GGG | + | chr7_4:5627857-5627876 | Msa1136910:intron | 25.0% |
| ! | TTCAATGTTATCATATGTGT+AGG | - | chr7_4:5628290-5628309 | None:intergenic | 25.0% |
| ! | TATTTGATATCTTGTGTTTC+AGG | + | chr7_4:5628591-5628610 | Msa1136910:intron | 25.0% |
| ! | ATTTGATATCTTGTGTTTCA+GGG | + | chr7_4:5628592-5628611 | Msa1136910:intron | 25.0% |
| ! | TTGCAATGGAATATATCTTT+GGG | - | chr7_4:5628727-5628746 | None:intergenic | 25.0% |
| ! | ATTGCAATGGAATATATCTT+TGG | - | chr7_4:5628728-5628747 | None:intergenic | 25.0% |
| ! | TTAATCATAATATCCGAAGA+TGG | + | chr7_4:5629014-5629033 | Msa1136910:intron | 25.0% |
| ! | TCAATAAAAAGAACCATCTT+CGG | - | chr7_4:5629030-5629049 | None:intergenic | 25.0% |
| !!! | TTTTTATTGATTTGATGAGG+AGG | + | chr7_4:5629040-5629059 | Msa1136910:intron | 25.0% |
| ! | ATTTACAAAAGGCAAAACAA+TGG | - | chr7_4:5629071-5629090 | None:intergenic | 25.0% |
| ! | AAGATAAAAGGAACAATGAA+AGG | - | chr7_4:5629210-5629229 | None:intergenic | 25.0% |
| !! | ATTGCTTCATTTTATGTACT+GGG | + | chr7_4:5629240-5629259 | Msa1136910:CDS | 25.0% |
| !! | TTTTCAGAATTTAGACCTTT+CGG | - | chr7_4:5629597-5629616 | None:intergenic | 25.0% |
| ! | TCTGAAAATTGATATCAACT+CGG | + | chr7_4:5629609-5629628 | Msa1136910:intron | 25.0% |
| !! | TAAGCTTTGTATGATTCATA+TGG | + | chr7_4:5629730-5629749 | Msa1136910:intron | 25.0% |
| ! | ATAAATTTCTAATGGAATCG+TGG | - | chr7_4:5630034-5630053 | None:intergenic | 25.0% |
| ! | GATTCCATTAGAAATTTATC+TGG | + | chr7_4:5630035-5630054 | Msa1136910:intron | 25.0% |
| ! | GATGAAGAATAAAAAAAGGT+TGG | - | chr7_4:5630089-5630108 | None:intergenic | 25.0% |
| ! | CTTGGATGAAGAATAAAAAA+AGG | - | chr7_4:5630093-5630112 | None:intergenic | 25.0% |
| ! | TCAGTAGATATAAATGTTCT+TGG | - | chr7_4:5630111-5630130 | None:intergenic | 25.0% |
| !! | TGTGTAAATGTAATTTGTGT+TGG | + | chr7_4:5630488-5630507 | Msa1136910:three_prime_UTR | 25.0% |
| !!! | CTTCGTGTTACTTTTTTAAT+TGG | + | chr7_4:5630544-5630563 | Msa1136910:three_prime_UTR | 25.0% |
| ! | AAAACATCTGTTTGAAAGTA+TGG | + | chr7_4:5630570-5630589 | Msa1136910:three_prime_UTR | 25.0% |
| ! | TAACGAAATCTGTCAGATTT+TGG | - | chr7_4:5627185-5627204 | None:intergenic | 30.0% |
| GGGTTTGATTAAGAAATCTA+GGG | - | chr7_4:5627214-5627233 | None:intergenic | 30.0% | |
| AGGGTTTGATTAAGAAATCT+AGG | - | chr7_4:5627215-5627234 | None:intergenic | 30.0% | |
| !! | GTATTGATTTAAGGGAATGA+GGG | - | chr7_4:5627234-5627253 | None:intergenic | 30.0% |
| !! | GATTTGGGGTATTGATTTAA+GGG | - | chr7_4:5627242-5627261 | None:intergenic | 30.0% |
| !! | TGATTTGGGGTATTGATTTA+AGG | - | chr7_4:5627243-5627262 | None:intergenic | 30.0% |
| ! | GTTGGATTATGTTTTCCATA+TGG | + | chr7_4:5627856-5627875 | Msa1136910:intron | 30.0% |
| ! | TGGATTATGTTTTCCATATG+GGG | + | chr7_4:5627858-5627877 | Msa1136910:intron | 30.0% |
| TGATTCTACTATTTGTCTGA+TGG | + | chr7_4:5628177-5628196 | Msa1136910:intron | 30.0% | |
| TTTGATATCTTGTGTTTCAG+GGG | + | chr7_4:5628593-5628612 | Msa1136910:intron | 30.0% | |
| CAACACTACAATTAACAGAA+AGG | - | chr7_4:5628679-5628698 | None:intergenic | 30.0% | |
| CTTTCTGTTAATTGTAGTGT+TGG | + | chr7_4:5628677-5628696 | Msa1136910:CDS | 30.0% | |
| ! | AGTTTTCACTGCTCATAAAT+TGG | + | chr7_4:5628832-5628851 | Msa1136910:CDS | 30.0% |
| GTCTTCAACTTTAATAGACT+GGG | - | chr7_4:5628921-5628940 | None:intergenic | 30.0% | |
| TGTCTTCAACTTTAATAGAC+TGG | - | chr7_4:5628922-5628941 | None:intergenic | 30.0% | |
| GTCTATTAAAGTTGAAGACA+TGG | + | chr7_4:5628922-5628941 | Msa1136910:CDS | 30.0% | |
| TATTAAAGTTGAAGACATGG+AGG | + | chr7_4:5628925-5628944 | Msa1136910:CDS | 30.0% | |
| ! | CATTGCTTCATTTTATGTAC+TGG | + | chr7_4:5629239-5629258 | Msa1136910:CDS | 30.0% |
| CAGGACAAATTAGTAGTAAA+TGG | - | chr7_4:5629780-5629799 | None:intergenic | 30.0% | |
| TGGTTATACACAAGACTTTA+GGG | - | chr7_4:5629829-5629848 | None:intergenic | 30.0% | |
| !!! | AAAGTACAAGAGTATTTTGC+TGG | - | chr7_4:5629863-5629882 | None:intergenic | 30.0% |
| ATAGATGTTTCAACATATCC+TGG | - | chr7_4:5629969-5629988 | None:intergenic | 30.0% | |
| CTAATTGCATAAGCTATTGA+TGG | + | chr7_4:5630002-5630021 | Msa1136910:intron | 30.0% | |
| TAGGCCAGATAAATTTCTAA+TGG | - | chr7_4:5630042-5630061 | None:intergenic | 30.0% | |
| TCAACAAATTAGCTCAAGTT+AGG | - | chr7_4:5630061-5630080 | None:intergenic | 30.0% | |
| !! | GAAGATGAAATTCTAGGGTT+TGG | - | chr7_4:5627163-5627182 | None:intergenic | 35.0% |
| !! | GGTATTGATTTAAGGGAATG+AGG | - | chr7_4:5627235-5627254 | None:intergenic | 35.0% |
| GGAAATTAGGGTATGATTTG+GGG | - | chr7_4:5627256-5627275 | None:intergenic | 35.0% | |
| GGGAAATTAGGGTATGATTT+GGG | - | chr7_4:5627257-5627276 | None:intergenic | 35.0% | |
| AACTCTCGATTTCTTTACAG+TGG | + | chr7_4:5627347-5627366 | Msa1136910:five_prime_UTR | 35.0% | |
| TCCATCAGGGTAGAAATAAA+TGG | - | chr7_4:5627594-5627613 | None:intergenic | 35.0% | |
| !!! | TCTTTTTGAGTTGACCCTTT+TGG | + | chr7_4:5627688-5627707 | Msa1136910:CDS | 35.0% |
| TTTCAAGAGTCCTCTCAAAA+TGG | - | chr7_4:5627748-5627767 | None:intergenic | 35.0% | |
| ATTCAACGAAATACCCCATA+TGG | - | chr7_4:5627874-5627893 | None:intergenic | 35.0% | |
| ! | ACACCTTCAATCAAAAGTGT+TGG | - | chr7_4:5628038-5628057 | None:intergenic | 35.0% |
| GATGAATGGAATATTGAGCA+TGG | + | chr7_4:5628436-5628455 | Msa1136910:intron | 35.0% | |
| ! | AAGGGATAATGTCGTTTGAT+TGG | + | chr7_4:5628465-5628484 | Msa1136910:intron | 35.0% |
| !!! | GTTACAAGCGGTTTTTTAAG+AGG | + | chr7_4:5628615-5628634 | Msa1136910:CDS | 35.0% |
| CAGAAAGGCAATCATCTTTA+AGG | - | chr7_4:5628664-5628683 | None:intergenic | 35.0% | |
| ! | AATTGGTGACCAATGTTAGA+AGG | - | chr7_4:5628755-5628774 | None:intergenic | 35.0% |
| TCTAACATTGGTCACCAATT+TGG | + | chr7_4:5628755-5628774 | Msa1136910:CDS | 35.0% | |
| TCTCACAACTTGCAATTGTA+TGG | - | chr7_4:5629118-5629137 | None:intergenic | 35.0% | |
| ACTTGTGTTGAATGAGAATG+AGG | + | chr7_4:5629137-5629156 | Msa1136910:intron | 35.0% | |
| ATTGAGCATGATAACTATGC+AGG | + | chr7_4:5629164-5629183 | Msa1136910:intron | 35.0% | |
| TTGAGCATGATAACTATGCA+GGG | + | chr7_4:5629165-5629184 | Msa1136910:intron | 35.0% | |
| !! | GTTCCTTTTATCTTGTTTGC+AGG | + | chr7_4:5629216-5629235 | Msa1136910:intron | 35.0% |
| ATGCCTGCAAACAAGATAAA+AGG | - | chr7_4:5629222-5629241 | None:intergenic | 35.0% | |
| TTACTGGGATGAACACAAAA+TGG | + | chr7_4:5629287-5629306 | Msa1136910:CDS | 35.0% | |
| TACTGGGATGAACACAAAAT+GGG | + | chr7_4:5629288-5629307 | Msa1136910:CDS | 35.0% | |
| ACTTAATCGCTCACTGATAA+AGG | + | chr7_4:5629543-5629562 | Msa1136910:intron | 35.0% | |
| TGAGTAAAATTGACACCGAA+AGG | + | chr7_4:5629579-5629598 | Msa1136910:intron | 35.0% | |
| !! | ACAAGACTTTAGGGTAAACT+TGG | - | chr7_4:5629820-5629839 | None:intergenic | 35.0% |
| CTGGTTATACACAAGACTTT+AGG | - | chr7_4:5629830-5629849 | None:intergenic | 35.0% | |
| ! | TTTTGCTGGTACAAATCAAC+TGG | - | chr7_4:5629849-5629868 | None:intergenic | 35.0% |
| AATTAGTATGTCGATCTTCC+AGG | + | chr7_4:5629948-5629967 | Msa1136910:intron | 35.0% | |
| !! | TGATGGATTTGAGTACTTGA+AGG | + | chr7_4:5630171-5630190 | Msa1136910:CDS | 35.0% |
| AGGAATGAAGCAATACTTGA+TGG | + | chr7_4:5630274-5630293 | Msa1136910:CDS | 35.0% | |
| ! | TTGATGGTAGCGACATAAAT+GGG | + | chr7_4:5630290-5630309 | Msa1136910:CDS | 35.0% |
| TTAAAAAGGAGAGTTGACGA+GGG | - | chr7_4:5630373-5630392 | None:intergenic | 35.0% | |
| TTTAAAAAGGAGAGTTGACG+AGG | - | chr7_4:5630374-5630393 | None:intergenic | 35.0% | |
| ! | GCTCTCACTGTCATTTAAAA+AGG | - | chr7_4:5630387-5630406 | None:intergenic | 35.0% |
| !! | TAGGGTTTGGTACGATTTTG+GGG | - | chr7_4:5627150-5627169 | None:intergenic | 40.0% |
| !! | CTAGGGTTTGGTACGATTTT+GGG | - | chr7_4:5627151-5627170 | None:intergenic | 40.0% |
| !! | TCTAGGGTTTGGTACGATTT+TGG | - | chr7_4:5627152-5627171 | None:intergenic | 40.0% |
| CGGGAAATTAGGGTATGATT+TGG | - | chr7_4:5627258-5627277 | None:intergenic | 40.0% | |
| ATGAAGGAATTCGATCGATG+CGG | - | chr7_4:5627278-5627297 | None:intergenic | 40.0% | |
| TGGATTTGAAGATGGTTTCG+CGG | - | chr7_4:5627402-5627421 | None:intergenic | 40.0% | |
| GATTGGGAAATACATAGCGT+CGG | + | chr7_4:5627538-5627557 | Msa1136910:CDS | 40.0% | |
| !! | CATAGCGTCGGATATCTTTT+CGG | + | chr7_4:5627550-5627569 | Msa1136910:CDS | 40.0% |
| !! | GCCATTTATTTCTACCCTGA+TGG | + | chr7_4:5627590-5627609 | Msa1136910:CDS | 40.0% |
| TTTCCCACTCTGATCCAAAA+GGG | - | chr7_4:5627705-5627724 | None:intergenic | 40.0% | |
| !! | AGGTTCATAGCCATTTTGAG+AGG | + | chr7_4:5627735-5627754 | Msa1136910:CDS | 40.0% |
| TTTGAGAGGACTCTTGAAAG+TGG | + | chr7_4:5627749-5627768 | Msa1136910:CDS | 40.0% | |
| CCTTATACCTTGAAATACCG+CGG | + | chr7_4:5627773-5627792 | Msa1136910:CDS | 40.0% | |
| !! | GCACCAACACTTTTGATTGA+AGG | + | chr7_4:5628032-5628051 | Msa1136910:intron | 40.0% |
| GTTCGATACTGACACAATAC+TGG | + | chr7_4:5628058-5628077 | Msa1136910:intron | 40.0% | |
| TGTTTGTGTCCATGCTTCAT+AGG | + | chr7_4:5628147-5628166 | Msa1136910:intron | 40.0% | |
| TGCTGTTGAAATGGGATGAA+TGG | + | chr7_4:5628422-5628441 | Msa1136910:intron | 40.0% | |
| TGGAATATTGAGCATGGTTG+AGG | + | chr7_4:5628442-5628461 | Msa1136910:intron | 40.0% | |
| ATATTGAGCATGGTTGAGGA+AGG | + | chr7_4:5628446-5628465 | Msa1136910:intron | 40.0% | |
| TATTGAGCATGGTTGAGGAA+GGG | + | chr7_4:5628447-5628466 | Msa1136910:intron | 40.0% | |
| ! | GTCGTTTGATTGGTGTCTAT+TGG | + | chr7_4:5628475-5628494 | Msa1136910:intron | 40.0% |
| !! | ATTGTAGTGTTGGTGTTGTG+AGG | + | chr7_4:5628687-5628706 | Msa1136910:CDS | 40.0% |
| GTTAGAAGGTGGTATTGCAA+TGG | - | chr7_4:5628741-5628760 | None:intergenic | 40.0% | |
| GCAATACCACCTTCTAACAT+TGG | + | chr7_4:5628743-5628762 | Msa1136910:CDS | 40.0% | |
| TTTCCAGCAGTTGACCAAAT+TGG | - | chr7_4:5628772-5628791 | None:intergenic | 40.0% | |
| TTTGGTCAACTGCTGGAAAA+TGG | + | chr7_4:5628773-5628792 | Msa1136910:CDS | 40.0% | |
| CAACTGCTGGAAAATGGTAA+AGG | + | chr7_4:5628779-5628798 | Msa1136910:CDS | 40.0% | |
| !! | AAGTGATGTGAGCTTTGAAG+TGG | + | chr7_4:5628802-5628821 | Msa1136910:CDS | 40.0% |
| !! | ATGTGAGCTTTGAAGTGGAT+GGG | + | chr7_4:5628807-5628826 | Msa1136910:CDS | 40.0% |
| TCTCATAGGACCAAAAAGCT+GGG | - | chr7_4:5628888-5628907 | None:intergenic | 40.0% | |
| TGGGTACTTTGATCTCTCAT+AGG | - | chr7_4:5628902-5628921 | None:intergenic | 40.0% | |
| AAAATGGGCAACAACCTTGA+TGG | + | chr7_4:5629303-5629322 | Msa1136910:CDS | 40.0% | |
| AGTTGTAGCCACGGTATTAA+TGG | - | chr7_4:5629413-5629432 | None:intergenic | 40.0% | |
| !!! | CATACCTCTGAGATTTTCAG+AGG | - | chr7_4:5629500-5629519 | None:intergenic | 40.0% |
| TTCATTCAGCAAGTCCAAAC+TGG | - | chr7_4:5629703-5629722 | None:intergenic | 40.0% | |
| GGCTAGATTTACTGAGCATT+CGG | + | chr7_4:5630234-5630253 | Msa1136910:CDS | 40.0% | |
| ! | CTTGATGGTAGCGACATAAA+TGG | + | chr7_4:5630289-5630308 | Msa1136910:CDS | 40.0% |
| !! | GCAAAGGCTTTAGTTTGAAG+TGG | + | chr7_4:5630324-5630343 | Msa1136910:exon | 40.0% |
| GGAGGATGATGATCGTTTAT+AGG | + | chr7_4:5630418-5630437 | Msa1136910:three_prime_UTR | 40.0% | |
| !! | AGGGTTTGGTACGATTTTGG+GGG | - | chr7_4:5627149-5627168 | None:intergenic | 45.0% |
| TCGATCGATGCGGGAAATTA+GGG | - | chr7_4:5627268-5627287 | None:intergenic | 45.0% | |
| TTCGATCGATGCGGGAAATT+AGG | - | chr7_4:5627269-5627288 | None:intergenic | 45.0% | |
| TGAAGGAATTCGATCGATGC+GGG | - | chr7_4:5627277-5627296 | None:intergenic | 45.0% | |
| AAGATGGTTTCGCGGTTTCT+CGG | - | chr7_4:5627394-5627413 | None:intergenic | 45.0% | |
| !! | GGCGATGATGGATTTGAAGA+TGG | - | chr7_4:5627410-5627429 | None:intergenic | 45.0% |
| TCCATCACCGAAACAGTGAA+AGG | + | chr7_4:5627467-5627486 | Msa1136910:CDS | 45.0% | |
| AGTACCCAGTGATCTTGAAC+TGG | - | chr7_4:5627499-5627518 | None:intergenic | 45.0% | |
| ACTGGGTACTCGCTTTCAAA+GGG | + | chr7_4:5627509-5627528 | Msa1136910:CDS | 45.0% | |
| TACTCGCTTTCAAAGGGGAT+CGG | + | chr7_4:5627515-5627534 | Msa1136910:CDS | 45.0% | |
| TTTCAAAGGGGATCGGGATT+GGG | + | chr7_4:5627522-5627541 | Msa1136910:CDS | 45.0% | |
| ! | TCGGATATCTTTTCGGTTGG+TGG | + | chr7_4:5627557-5627576 | Msa1136910:CDS | 45.0% |
| ! | CGGATATCTTTTCGGTTGGT+GGG | + | chr7_4:5627558-5627577 | Msa1136910:CDS | 45.0% |
| CCTCAACACTCTTTCCATCA+GGG | - | chr7_4:5627607-5627626 | None:intergenic | 45.0% | |
| TCCTCAACACTCTTTCCATC+AGG | - | chr7_4:5627608-5627627 | None:intergenic | 45.0% | |
| CGCAATGAAAAGCGACACAT+AGG | - | chr7_4:5627639-5627658 | None:intergenic | 45.0% | |
| ! | TTGACCCTTTTGGATCAGAG+TGG | + | chr7_4:5627698-5627717 | Msa1136910:CDS | 45.0% |
| ! | TGACCCTTTTGGATCAGAGT+GGG | + | chr7_4:5627699-5627718 | Msa1136910:CDS | 45.0% |
| CTTTCCCACTCTGATCCAAA+AGG | - | chr7_4:5627706-5627725 | None:intergenic | 45.0% | |
| CCGCGGTATTTCAAGGTATA+AGG | - | chr7_4:5627776-5627795 | None:intergenic | 45.0% | |
| CATACTACCGCGGTATTTCA+AGG | - | chr7_4:5627783-5627802 | None:intergenic | 45.0% | |
| TGAAATACCGCGGTAGTATG+TGG | + | chr7_4:5627783-5627802 | Msa1136910:CDS | 45.0% | |
| CACACAACACCTATGAAGCA+TGG | - | chr7_4:5628159-5628178 | None:intergenic | 45.0% | |
| CAATGAAGCAAGACACTCCT+TGG | + | chr7_4:5628250-5628269 | Msa1136910:intron | 45.0% | |
| GCAAGACACTCCTTGGATTT+AGG | + | chr7_4:5628257-5628276 | Msa1136910:intron | 45.0% | |
| ! | AGGTGTCATGCCTAAATCCA+AGG | - | chr7_4:5628270-5628289 | None:intergenic | 45.0% |
| AGCAAGCTATGAAGCAGACA+CGG | - | chr7_4:5628368-5628387 | None:intergenic | 45.0% | |
| !! | TGTCTGCTTCATAGCTTGCT+TGG | + | chr7_4:5628368-5628387 | Msa1136910:intron | 45.0% |
| TCCTCAATGTGTTGTGTGGT+TGG | + | chr7_4:5628395-5628414 | Msa1136910:intron | 45.0% | |
| CCTCAATGTGTTGTGTGGTT+GGG | + | chr7_4:5628396-5628415 | Msa1136910:intron | 45.0% | |
| !! | TTGGGAGGTGCTGTTGAAAT+GGG | + | chr7_4:5628414-5628433 | Msa1136910:intron | 45.0% |
| TGTGTTTCAGGGGTTACAAG+CGG | + | chr7_4:5628603-5628622 | Msa1136910:intron | 45.0% | |
| TGGTGACCAATGTTAGAAGG+TGG | - | chr7_4:5628752-5628771 | None:intergenic | 45.0% | |
| TCACCAATTTGGTCAACTGC+TGG | + | chr7_4:5628766-5628785 | Msa1136910:CDS | 45.0% | |
| !! | GATGTGAGCTTTGAAGTGGA+TGG | + | chr7_4:5628806-5628825 | Msa1136910:CDS | 45.0% |
| !! | TGTGAGCTTTGAAGTGGATG+GGG | + | chr7_4:5628808-5628827 | Msa1136910:CDS | 45.0% |
| !! | AAAAGCTGGGCTCTGAAAAC+AGG | - | chr7_4:5628875-5628894 | None:intergenic | 45.0% |
| ! | GTTTTCAGAGCCCAGCTTTT+TGG | + | chr7_4:5628875-5628894 | Msa1136910:CDS | 45.0% |
| CTCTCATAGGACCAAAAAGC+TGG | - | chr7_4:5628889-5628908 | None:intergenic | 45.0% | |
| ! | CATGGAGGCTCCAGTTTTTA+AGG | + | chr7_4:5628940-5628959 | Msa1136910:CDS | 45.0% |
| CTGACATGCAAGAGCTTACT+GGG | + | chr7_4:5629272-5629291 | Msa1136910:CDS | 45.0% | |
| TAGAAGATGTTGGGCCATCA+AGG | - | chr7_4:5629320-5629339 | None:intergenic | 45.0% | |
| CTGATCGTTATGCCTTAGAG+AGG | + | chr7_4:5629347-5629366 | Msa1136910:CDS | 45.0% | |
| TATAAGCCTGAGCCTCTCTA+AGG | - | chr7_4:5629362-5629381 | None:intergenic | 45.0% | |
| AGATGTCGCCATTAATACCG+TGG | + | chr7_4:5629402-5629421 | Msa1136910:CDS | 45.0% | |
| CAAGGCTAAAGTTGTAGCCA+CGG | - | chr7_4:5629422-5629441 | None:intergenic | 45.0% | |
| !!! | ACCTCTGAGATTTTCAGAGG+TGG | - | chr7_4:5629497-5629516 | None:intergenic | 45.0% |
| ATTCAGCAAGTCCAAACTGG+AGG | - | chr7_4:5629700-5629719 | None:intergenic | 45.0% | |
| GGAACAATCACTGAACTTGC+AGG | - | chr7_4:5629799-5629818 | None:intergenic | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | + | chr7_4:5630154-5630173 | Msa1136910:intron | 45.0% | |
| GTAGCTCAGTCAGAACAGAT+GGG | - | chr7_4:5630204-5630223 | None:intergenic | 45.0% | |
| AGTAGCTCAGTCAGAACAGA+TGG | - | chr7_4:5630205-5630224 | None:intergenic | 45.0% | |
| ATCTGTTCTGACTGAGCTAC+TGG | + | chr7_4:5630204-5630223 | Msa1136910:CDS | 45.0% | |
| ! | CGGACTTTTTATGCAAGCAC+AGG | + | chr7_4:5630254-5630273 | Msa1136910:CDS | 45.0% |
| ! | ATGGTAGCGACATAAATGGG+AGG | + | chr7_4:5630293-5630312 | Msa1136910:CDS | 45.0% |
| ACAGTGAGAGCCTTAGTTAG+AGG | + | chr7_4:5630396-5630415 | Msa1136910:three_prime_UTR | 45.0% | |
| CAGTGAGAGCCTTAGTTAGA+GGG | + | chr7_4:5630397-5630416 | Msa1136910:three_prime_UTR | 45.0% | |
| CATCATCCTCCCTCTAACTA+AGG | - | chr7_4:5630409-5630428 | None:intergenic | 45.0% | |
| !! | GGTGCTGTTACTGTTCTGTT+AGG | + | chr7_4:5630509-5630528 | Msa1136910:three_prime_UTR | 45.0% |
| !! | GGGTTTGGTACGATTTTGGG+GGG | - | chr7_4:5627148-5627167 | None:intergenic | 50.0% |
| TCTTTACAGTGGCTCTCGCA+TGG | + | chr7_4:5627358-5627377 | Msa1136910:exon | 50.0% | |
| CTTTACAGTGGCTCTCGCAT+GGG | + | chr7_4:5627359-5627378 | Msa1136910:exon | 50.0% | |
| GATGAGGAAGATGGCGATGA+TGG | - | chr7_4:5627422-5627441 | None:intergenic | 50.0% | |
| GCCTTTCACTGTTTCGGTGA+TGG | - | chr7_4:5627471-5627490 | None:intergenic | 50.0% | |
| GTGCGAGCCTTTCACTGTTT+CGG | - | chr7_4:5627477-5627496 | None:intergenic | 50.0% | |
| TCGCACCAGTTCAAGATCAC+TGG | + | chr7_4:5627491-5627510 | Msa1136910:CDS | 50.0% | |
| CGCACCAGTTCAAGATCACT+GGG | + | chr7_4:5627492-5627511 | Msa1136910:CDS | 50.0% | |
| CACTGGGTACTCGCTTTCAA+AGG | + | chr7_4:5627508-5627527 | Msa1136910:CDS | 50.0% | |
| CTGGGTACTCGCTTTCAAAG+GGG | + | chr7_4:5627510-5627529 | Msa1136910:CDS | 50.0% | |
| ACTCGCTTTCAAAGGGGATC+GGG | + | chr7_4:5627516-5627535 | Msa1136910:CDS | 50.0% | |
| CTTTCAAAGGGGATCGGGAT+TGG | + | chr7_4:5627521-5627540 | Msa1136910:CDS | 50.0% | |
| ! | GCGTCGGATATCTTTTCGGT+TGG | + | chr7_4:5627554-5627573 | Msa1136910:CDS | 50.0% |
| !! | CCCTGATGGAAAGAGTGTTG+AGG | + | chr7_4:5627604-5627623 | Msa1136910:CDS | 50.0% |
| TTCATTGCGCTTGCGAGTGA+TGG | + | chr7_4:5627650-5627669 | Msa1136910:CDS | 50.0% | |
| TCATTGCGCTTGCGAGTGAT+GGG | + | chr7_4:5627651-5627670 | Msa1136910:CDS | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | + | chr7_4:5627708-5627727 | Msa1136910:CDS | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | + | chr7_4:5627715-5627734 | Msa1136910:CDS | 50.0% |
| GAGCTTACCACATACTACCG+CGG | - | chr7_4:5627793-5627812 | None:intergenic | 50.0% | |
| ACGGACATGAACACTGGTCA+CGG | - | chr7_4:5628349-5628368 | None:intergenic | 50.0% | |
| CTGCTCCTCAATGTGTTGTG+TGG | + | chr7_4:5628391-5628410 | Msa1136910:intron | 50.0% | |
| CCCAACCACACAACACATTG+AGG | - | chr7_4:5628399-5628418 | None:intergenic | 50.0% | |
| CAATGTGTTGTGTGGTTGGG+AGG | + | chr7_4:5628399-5628418 | Msa1136910:intron | 50.0% | |
| !! | GTTGGGAGGTGCTGTTGAAA+TGG | + | chr7_4:5628413-5628432 | Msa1136910:intron | 50.0% |
| CCAGTAAGCTCTTGCATGTC+AGG | - | chr7_4:5629274-5629293 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | + | chr7_4:5629271-5629290 | Msa1136910:CDS | 50.0% | |
| GATGGCCCAACATCTTCTAG+CGG | + | chr7_4:5629321-5629340 | Msa1136910:CDS | 50.0% | |
| AGCAGCCGCTAGAAGATGTT+GGG | - | chr7_4:5629329-5629348 | None:intergenic | 50.0% | |
| GTTATGCCTTAGAGAGGCTC+AGG | + | chr7_4:5629353-5629372 | Msa1136910:CDS | 50.0% | |
| CGTGGCTACAACTTTAGCCT+TGG | + | chr7_4:5629420-5629439 | Msa1136910:CDS | 50.0% | |
| CTGCTTTCAGCTGGAAACAG+TGG | - | chr7_4:5629456-5629475 | None:intergenic | 50.0% | |
| TGAGACAGACTGCTTTCAGC+TGG | - | chr7_4:5629465-5629484 | None:intergenic | 50.0% | |
| ! | GCCACCTCTGAAAATCTCAG+AGG | + | chr7_4:5629493-5629512 | Msa1136910:CDS | 50.0% |
| TAGCAGTGACAGGCTGACAA+AGG | - | chr7_4:5629674-5629693 | None:intergenic | 50.0% | |
| CACTGCTATAGCCTCCAGTT+TGG | + | chr7_4:5629686-5629705 | Msa1136910:intron | 50.0% | |
| GTAGCGACATAAATGGGAGG+CGG | + | chr7_4:5630296-5630315 | Msa1136910:CDS | 50.0% | |
| TAGCGACATAAATGGGAGGC+GGG | + | chr7_4:5630297-5630316 | Msa1136910:CDS | 50.0% | |
| TGAGAGCCTTAGTTAGAGGG+AGG | + | chr7_4:5630400-5630419 | Msa1136910:three_prime_UTR | 50.0% | |
| TTTGGGGGGAGAGAGAGAGA+GGG | - | chr7_4:5627134-5627153 | None:intergenic | 55.0% | |
| !! | TTTTGGGGGGAGAGAGAGAG+AGG | - | chr7_4:5627135-5627154 | None:intergenic | 55.0% |
| GCCATCTTCCTCATCCGAAC+CGG | + | chr7_4:5627427-5627446 | Msa1136910:CDS | 55.0% | |
| GATGTCGACGAAGTTGTCGC+CGG | - | chr7_4:5627449-5627468 | None:intergenic | 55.0% | |
| !! | TTTCGGTTGGTGGGTACGAC+TGG | + | chr7_4:5627567-5627586 | Msa1136910:CDS | 55.0% |
| !! | TTCGGTTGGTGGGTACGACT+GGG | + | chr7_4:5627568-5627587 | Msa1136910:CDS | 55.0% |
| GCAGACACGGACATGAACAC+TGG | - | chr7_4:5628355-5628374 | None:intergenic | 55.0% | |
| !! | TGGTGTTGTGAGGTCACGCA+CGG | + | chr7_4:5628697-5628716 | Msa1136910:CDS | 55.0% |
| CAGCAGCCGCTAGAAGATGT+TGG | - | chr7_4:5629330-5629349 | None:intergenic | 55.0% | |
| !! | ACAGTGGTGTTGCTCTGCCA+AGG | - | chr7_4:5629440-5629459 | None:intergenic | 55.0% |
| CTGGAGGCTATAGCAGTGAC+AGG | - | chr7_4:5629684-5629703 | None:intergenic | 55.0% | |
| GACTGAGCTACTGGAGTACG+TGG | + | chr7_4:5630213-5630232 | Msa1136910:CDS | 55.0% | |
| TTGGGGGGAGAGAGAGAGAG+GGG | - | chr7_4:5627133-5627152 | None:intergenic | 60.0% | |
| !! | GCCGGTTCGGATGAGGAAGA+TGG | - | chr7_4:5627431-5627450 | None:intergenic | 60.0% |
| !! | AGTTGTCGCCGGTTCGGATG+AGG | - | chr7_4:5627438-5627457 | None:intergenic | 60.0% |
| ! | CGACGAAGTTGTCGCCGGTT+CGG | - | chr7_4:5627444-5627463 | None:intergenic | 60.0% |
| GTTGTGAGGTCACGCACGGA+AGG | + | chr7_4:5628701-5628720 | Msa1136910:CDS | 60.0% | |
| ATGGGAGGCGGGTGAAGCAA+AGG | + | chr7_4:5630308-5630327 | Msa1136910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 5627093 | 5630682 | 5627093 | ID=Msa1136910;Name=Msa1136910 |
| chr7_4 | mRNA | 5627093 | 5630682 | 5627093 | ID=Msa1136910-mRNA-1;Parent=Msa1136910;Name=Msa1136910-mRNA-1;_AED=0.17;_eAED=0.17;_QI=284|1|1|1|1|1|4|346|410 |
| chr7_4 | exon | 5627093 | 5627804 | 5627093 | ID=Msa1136910-mRNA-1:exon:1485;Parent=Msa1136910-mRNA-1 |
| chr7_4 | exon | 5628613 | 5628961 | 5628613 | ID=Msa1136910-mRNA-1:exon:1486;Parent=Msa1136910-mRNA-1 |
| chr7_4 | exon | 5629238 | 5629514 | 5629238 | ID=Msa1136910-mRNA-1:exon:1487;Parent=Msa1136910-mRNA-1 |
| chr7_4 | exon | 5630158 | 5630682 | 5630158 | ID=Msa1136910-mRNA-1:exon:1488;Parent=Msa1136910-mRNA-1 |
| chr7_4 | five_prime_UTR | 5627093 | 5627376 | 5627093 | ID=Msa1136910-mRNA-1:five_prime_utr;Parent=Msa1136910-mRNA-1 |
| chr7_4 | CDS | 5627377 | 5627804 | 5627377 | ID=Msa1136910-mRNA-1:cds;Parent=Msa1136910-mRNA-1 |
| chr7_4 | CDS | 5628613 | 5628961 | 5628613 | ID=Msa1136910-mRNA-1:cds;Parent=Msa1136910-mRNA-1 |
| chr7_4 | CDS | 5629238 | 5629514 | 5629238 | ID=Msa1136910-mRNA-1:cds;Parent=Msa1136910-mRNA-1 |
| chr7_4 | CDS | 5630158 | 5630336 | 5630158 | ID=Msa1136910-mRNA-1:cds;Parent=Msa1136910-mRNA-1 |
| chr7_4 | three_prime_UTR | 5630337 | 5630682 | 5630337 | ID=Msa1136910-mRNA-1:three_prime_utr;Parent=Msa1136910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
