AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1145800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145800 MtrunA17_Chr7g0248041 97.333 600 16 0 1 600 1 600 0.0 1207
Msa1145800 MtrunA17_Chr8g0348691 50.190 263 111 6 323 568 1 260 3.65e-77 245
Msa1145800 MtrunA17_Chr8g0387141 40.678 354 181 8 243 578 242 584 4.10e-74 248
Msa1145800 MtrunA17_Chr8g0387141 52.174 69 33 0 1 69 67 135 9.93e-14 74.3
Msa1145800 MtrunA17_Chr8g0387181 35.572 402 199 9 231 578 221 616 4.45e-68 233
Msa1145800 MtrunA17_Chr8g0387181 57.377 61 26 0 1 61 60 120 2.88e-12 69.7
Msa1145800 MtrunA17_Chr8g0387161 36.615 325 161 5 259 578 1 285 5.94e-65 214
Msa1145800 MtrunA17_Chr1g0186281 47.917 192 100 0 386 577 381 572 2.60e-57 202
Msa1145800 MtrunA17_Chr1g0186281 52.308 65 31 0 1 65 69 133 3.20e-12 69.3
Msa1145800 MtrunA17_Chr1g0186261 46.354 192 103 0 386 577 384 575 2.19e-55 197
Msa1145800 MtrunA17_Chr1g0186261 52.308 65 31 0 1 65 69 133 3.94e-11 65.9
Msa1145800 MtrunA17_Chr1g0186191 33.053 357 197 5 255 577 234 582 1.47e-54 195
Msa1145800 MtrunA17_Chr1g0186191 53.846 65 30 0 1 65 83 147 2.09e-12 70.1
Msa1145800 MtrunA17_Chr8g0348681 37.195 328 174 9 8 318 16 328 5.03e-48 171
Msa1145800 MtrunA17_Chr6g0479271 32.268 313 181 9 183 483 2 295 1.40e-30 122
Msa1145800 MtrunA17_Chr3g0086341 37.037 189 106 4 378 555 140 326 1.76e-30 125
Msa1145800 MtrunA17_Chr7g0241681 37.870 169 92 3 383 540 190 356 2.65e-30 122
Msa1145800 MtrunA17_Chr7g0241661 32.159 227 135 8 324 534 114 337 1.47e-20 93.6
Msa1145800 MtrunA17_Chr5g0420461 37.234 94 40 1 390 483 90 164 1.90e-13 69.3
Msa1145800 MtrunA17_Chr6g0453251 50.000 58 29 0 1 58 67 124 7.65e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145800 AT2G46040.3 42.042 333 151 8 234 555 229 530 3.55e-67 229
Msa1145800 AT2G46040.1 42.042 333 151 8 234 555 229 530 3.55e-67 229
Msa1145800 AT2G46040.2 42.042 333 151 8 234 555 243 544 4.32e-67 229
Msa1145800 AT4G11400.2 39.823 339 175 7 251 566 218 550 3.16e-63 218
Msa1145800 AT4G11400.1 39.823 339 175 7 251 566 218 550 3.16e-63 218
Msa1145800 AT5G04110.2 40.805 174 91 4 387 549 362 534 8.91e-34 135
Msa1145800 AT5G04110.1 40.805 174 91 4 387 549 361 533 8.99e-34 135
Msa1145800 AT5G04110.3 40.805 174 91 4 387 549 361 533 8.99e-34 135
Msa1145800 AT2G03470.2 31.818 286 165 8 286 555 24 295 2.17e-31 127
Msa1145800 AT2G03470.1 31.707 287 165 8 286 555 24 296 2.69e-31 127
Msa1145800 AT1G13880.1 35.000 200 110 5 383 569 124 316 2.48e-26 112
Msa1145800 AT1G13880.2 35.000 200 110 5 383 569 134 326 2.50e-26 112
Msa1145800 AT1G13880.3 35.000 200 110 5 383 569 125 317 2.54e-26 112
Msa1145800 AT1G26580.3 35.204 196 108 4 378 555 60 254 3.47e-26 112
Msa1145800 AT1G26580.2 35.204 196 108 4 378 555 126 320 6.16e-26 112
Msa1145800 AT1G26580.1 35.204 196 108 4 378 555 126 320 6.16e-26 112
Msa1145800 AT5G04110.4 40.690 145 74 4 387 520 361 504 2.64e-25 110

Find 189 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGCTTGATAGATGTTTC+TGG 0.140839 7_4:+22713161 Msa1145800:CDS
GACCCTTTAAATAGGTTATA+TGG 0.167285 7_4:+22714021 Msa1145800:three_prime_UTR
GCTGAAGTTCAAGTTAATTT+TGG 0.187751 7_4:-22713855 None:intergenic
GTCTAAATTCCACTGGTAAA+AGG 0.214752 7_4:-22713059 None:intergenic
CTCCCATATAACCTATTTAA+AGG 0.228094 7_4:-22714024 None:intergenic
GGCGTTGGCTGTGGCTTCTT+AGG 0.242383 7_4:-22713391 None:intergenic
CTCTCTTTATTAACACTAGA+TGG 0.242913 7_4:-22709863 None:intergenic
TCCTTCACTCTCAACTTTCT+TGG 0.243171 7_4:-22709645 None:intergenic
TGGGAGGAGTCAATTGTATT+TGG 0.246024 7_4:+22714041 Msa1145800:three_prime_UTR
AAACTTTCCCTGCTCTTCTT+AGG 0.251694 7_4:-22713205 None:intergenic
TTATCTCCATTGCAGCATTT+TGG 0.260815 7_4:-22709730 None:intergenic
ATGATTTGATCTAGGTTTAT+AGG 0.267440 7_4:-22708310 None:intergenic
AGCTTATCTGAGTTTCTATA+TGG 0.273411 7_4:+22713875 Msa1145800:three_prime_UTR
AATCGTAAAATCCGAACTTT+TGG 0.277183 7_4:+22712913 Msa1145800:CDS
ATTACATTGACCCTTTAAAT+AGG 0.286157 7_4:+22714013 Msa1145800:three_prime_UTR
TTCAAAATCTAGGATCTGTT+TGG 0.288526 7_4:+22708234 Msa1145800:five_prime_UTR
GATTTGGTTGGGGAAGAATA+TGG 0.301512 7_4:+22709248 Msa1145800:CDS
AAGAGAGCTTTGGTCGTAAA+AGG 0.302198 7_4:+22709879 Msa1145800:CDS
TTTACTCTAATTCAAAATCT+AGG 0.312892 7_4:+22708224 Msa1145800:five_prime_UTR
ATTCGGGCACTTCAGCTTGA+TGG 0.324498 7_4:-22712829 None:intergenic
CACGAATCTTGTGTCTAATA+TGG 0.325526 7_4:+22709622 Msa1145800:CDS
ACACCATTGAAGGGTGCTTT+TGG 0.331159 7_4:+22713328 Msa1145800:CDS
GGCACTTCAGCTTGATGGTT+TGG 0.334418 7_4:-22712824 None:intergenic
GCTAGACTCAAGCTGGAAAT+AGG 0.340184 7_4:+22713031 Msa1145800:CDS
GGAGCGTTTAACGGAGTTGC+AGG 0.344592 7_4:+22709406 Msa1145800:CDS
TGGGCGATAGAGTTAAGTTT+GGG 0.351590 7_4:+22709384 Msa1145800:CDS
GCGTTGGCTGTGGCTTCTTA+GGG 0.354312 7_4:-22713390 None:intergenic
GTGGGCGATAGAGTTAAGTT+TGG 0.357837 7_4:+22709383 Msa1145800:CDS
CTGTTAAGTGTTAAGTTCAT+TGG 0.363043 7_4:+22709090 Msa1145800:five_prime_UTR
ACCCTTTAAATAGGTTATAT+GGG 0.366850 7_4:+22714022 Msa1145800:three_prime_UTR
ATGAGTTGTGGGATTTGGTT+GGG 0.366912 7_4:+22709237 Msa1145800:CDS
AAATGCTGCAATGGAGATAA+TGG 0.367094 7_4:+22709733 Msa1145800:CDS
AATCCTTGTGATCCTGTGTT+AGG 0.370694 7_4:+22709956 Msa1145800:CDS
TAAGAATGAGTTGTGGGATT+TGG 0.371336 7_4:+22709232 Msa1145800:CDS
GTGAGTTGTGCCAGTCCATT+CGG 0.372553 7_4:-22712846 None:intergenic
TCATCACTGTCAATGTTATC+AGG 0.372585 7_4:-22713289 None:intergenic
TTCGCTTGATAGATGTTTCT+GGG 0.372715 7_4:+22713162 Msa1145800:CDS
AAAAGGTACCAGATGAATTT+CGG 0.376007 7_4:-22708806 None:intergenic
GACATCATCGCCACTTTCAT+TGG 0.385220 7_4:-22709828 None:intergenic
AGTGGCTGGGAACTCAAATA+TGG 0.387174 7_4:+22712882 Msa1145800:CDS
CTAGGTTTATAGGAGGTCTA+TGG 0.396992 7_4:-22708300 None:intergenic
CAATGCCTGAAAAGTCAAAA+TGG 0.398546 7_4:+22709981 Msa1145800:CDS
TGGCTTCTTAGGGGATAATA+AGG 0.401536 7_4:-22713380 None:intergenic
GAGTTGGTGTTGGATGATTA+TGG 0.401674 7_4:+22709431 Msa1145800:CDS
TTCATGCCGTTGCCAGGTAC+AGG 0.406356 7_4:+22712967 Msa1145800:CDS
GAAAGAGATCTAGAAAATGT+TGG 0.406581 7_4:+22709136 Msa1145800:exon
CCTTTGAAGAATGTCGTTGA+TGG 0.409145 7_4:+22709338 Msa1145800:CDS
AGATTTGTATAAGCTGTTCA+TGG 0.410254 7_4:+22709175 Msa1145800:CDS
GTTGGGGAAGAATATGGGTT+GGG 0.412314 7_4:+22709254 Msa1145800:CDS
TAGAGTGAAGGTTGTGAATC+CGG 0.413505 7_4:+22709520 Msa1145800:CDS
TTCTCTCTCCGAAATTCATC+TGG 0.413861 7_4:+22708798 Msa1145800:five_prime_UTR
TATCAGGAGTATGCCTGTTC+TGG 0.414090 7_4:-22713273 None:intergenic
GATGAAGTCAAGAGTGTATA+CGG 0.415499 7_4:+22709470 Msa1145800:CDS
GGGAAGAAGTGAGGCGATGC+TGG 0.415602 7_4:+22713089 Msa1145800:CDS
GGTGCATCAAGAATTGATTC+TGG 0.415723 7_4:-22712776 None:intergenic
AGGTTCCCCTTCCAAAAGTT+CGG 0.417302 7_4:-22712924 None:intergenic
ATTTGGTTGGGGAAGAATAT+GGG 0.421040 7_4:+22709249 Msa1145800:CDS
AACGGATCAAACGTGACAAT+GGG 0.422576 7_4:+22712672 Msa1145800:CDS
TCAAAATCTAGGATCTGTTT+GGG 0.422914 7_4:+22708235 Msa1145800:five_prime_UTR
GATTATGGTGAGGGAGATGT+CGG 0.423212 7_4:+22709446 Msa1145800:CDS
TGAGTTGTGCCAGTCCATTC+GGG 0.426236 7_4:-22712845 None:intergenic
CAAGAGTGATTCTAAGTGGC+TGG 0.427819 7_4:+22712868 Msa1145800:CDS
CGATGTCAGAAATGCAAAGT+TGG 0.431021 7_4:+22709915 Msa1145800:CDS
TCCCATATAACCTATTTAAA+GGG 0.432234 7_4:-22714023 None:intergenic
AAAGAGATCTAGAAAATGTT+GGG 0.435560 7_4:+22709137 Msa1145800:exon
AAGGTATATGAGTACATTGA+TGG 0.435788 7_4:+22709566 Msa1145800:CDS
TAAGTTTGGGGAGCGTTTAA+CGG 0.437682 7_4:+22709397 Msa1145800:CDS
ACAATGAAGCTCATGATTTG+AGG 0.438613 7_4:-22713444 None:intergenic
AACGGAGTTGCAGGCGGAGT+TGG 0.440717 7_4:+22709415 Msa1145800:CDS
AAACATCTATCAAGCGAAGC+AGG 0.442525 7_4:-22713157 None:intergenic
CTGGTGAAAATGTGTAACTA+AGG 0.443250 7_4:-22713746 None:intergenic
GGGTGTGAAAGTGGGTTCTT+CGG 0.443605 7_4:+22709274 Msa1145800:CDS
ATTATGGTGAGGGAGATGTC+GGG 0.443986 7_4:+22709447 Msa1145800:CDS
ATCGGAATTTACACCATTGA+AGG 0.444707 7_4:+22713318 Msa1145800:CDS
GTTCCCGAAGCGTGATTTAG+TGG 0.446072 7_4:+22709364 Msa1145800:CDS
CTTACGGTAATCACGAGATC+TGG 0.449583 7_4:+22710008 Msa1145800:CDS
GACAGGGTTGTTGTGGAGCT+TGG 0.454931 7_4:+22709000 Msa1145800:intron
CAACATTTCCTAAGAAGAGC+AGG 0.455515 7_4:+22713197 Msa1145800:CDS
AGTGTTAATAAAGAGAGCTT+TGG 0.458202 7_4:+22709869 Msa1145800:CDS
TTAAGTGTTAAGTTCATTGG+TGG 0.469351 7_4:+22709093 Msa1145800:five_prime_UTR
CGCCCACTAAATCACGCTTC+GGG 0.472395 7_4:-22709367 None:intergenic
GATGTAGCAAACAGCATGCC+TGG 0.473778 7_4:+22709767 Msa1145800:CDS
TTTGTATGTGGCGTTGGCTG+TGG 0.473835 7_4:-22713400 None:intergenic
TCGCCCACTAAATCACGCTT+CGG 0.475900 7_4:-22709368 None:intergenic
CCCAAGGTTATCATCATACA+TGG 0.476856 7_4:-22712630 None:intergenic
ACAAGATTCATGCCGTTGCC+AGG 0.482217 7_4:+22712961 Msa1145800:CDS
ACTGTTAAAACAACTGCGTC+AGG 0.482273 7_4:+22713789 Msa1145800:three_prime_UTR
TGACAGTGATGATGAAGAAT+CGG 0.482629 7_4:+22713300 Msa1145800:CDS
GAGGTAAAAGATGCTGCCTT+TGG 0.483071 7_4:+22713605 Msa1145800:three_prime_UTR
TCTTGTCTTCCCTTTCCGAC+AGG 0.485818 7_4:-22712944 None:intergenic
CAGCCAACGCCACATACAAA+AGG 0.491192 7_4:+22713403 Msa1145800:CDS
AATGAGTTGTGGGATTTGGT+TGG 0.494085 7_4:+22709236 Msa1145800:CDS
ATATGGGTTGGGTGTGAAAG+TGG 0.494088 7_4:+22709265 Msa1145800:CDS
ACTAGTTGACGTGCTTATGC+AGG 0.495122 7_4:+22709667 Msa1145800:CDS
CAGTGGAATTTAGACAAAGC+AGG 0.497895 7_4:+22713067 Msa1145800:CDS
TGCCAGTTGGCATATAGAAA+AGG 0.499279 7_4:-22713959 None:intergenic
GCTGAAGTGCCCGAATGGAC+TGG 0.499421 7_4:+22712836 Msa1145800:CDS
AAGTCAAAATGGAAGTCTTA+CGG 0.503873 7_4:+22709992 Msa1145800:CDS
TCAAGAGTGTATACGGATGT+AGG 0.504450 7_4:+22709477 Msa1145800:CDS
AGCGCAGAGGATACCAGAAC+AGG 0.504565 7_4:+22713260 Msa1145800:CDS
CCATGTATGATGATAACCTT+GGG 0.511627 7_4:+22712630 Msa1145800:CDS
AGTTCAGTCGCATTCAACTC+CGG 0.513469 7_4:-22709539 None:intergenic
CTGCTTTGTCTAAATTCCAC+TGG 0.513826 7_4:-22713066 None:intergenic
TTGTTTCTATGTCAGATGAT+TGG 0.514839 7_4:-22708456 None:intergenic
TAAGATTGTAATTTGTCCCA+AGG 0.519599 7_4:-22712646 None:intergenic
TCTCTTTATTAACACTAGAT+GGG 0.523442 7_4:-22709862 None:intergenic
AAAGATGCTGCCTTTGGTGG+TGG 0.523947 7_4:+22713611 Msa1145800:three_prime_UTR
GAAAAGCGCTAGACTCAAGC+TGG 0.525180 7_4:+22713024 Msa1145800:CDS
CCCACAGTGAATATCCCTCT+CGG 0.526822 7_4:+22712800 Msa1145800:CDS
TGTCCAAAAGCACCCTTCAA+TGG 0.528458 7_4:-22713331 None:intergenic
GATGTCAGAAATGCAAAGTT+GGG 0.528739 7_4:+22709916 Msa1145800:CDS
GTCTGGCACTAATAAAATGA+AGG 0.533480 7_4:+22709598 Msa1145800:CDS
AGGCATGCTGTTTGCTACAT+CGG 0.534517 7_4:-22709765 None:intergenic
GTTGCAGGCGGAGTTGGTGT+TGG 0.535127 7_4:+22709421 Msa1145800:CDS
GAAGGGGAACCTGTCGGAAA+GGG 0.537473 7_4:+22712935 Msa1145800:CDS
AAGAATTGATTCTGGAACAC+AGG 0.538056 7_4:-22712768 None:intergenic
TGAGTTGTGGGATTTGGTTG+GGG 0.538551 7_4:+22709238 Msa1145800:CDS
AACACCTGATTCCGAAGCTA+AGG 0.538928 7_4:+22712730 Msa1145800:CDS
TTGCTTCCATCTGACAATCC+AGG 0.540122 7_4:-22709785 None:intergenic
TGAGACTAGTCTCAGAAAGT+TGG 0.541534 7_4:+22709703 Msa1145800:CDS
GAATGCGACTGAACTCGAAA+AGG 0.545834 7_4:+22709547 Msa1145800:CDS
ACTCGACAGAACCCTGTACC+TGG 0.548252 7_4:-22712979 None:intergenic
ATCAAGCTGAAGTGCCCGAA+TGG 0.549788 7_4:+22712831 Msa1145800:CDS
TGTTTGTAAGAATGAGTTGT+GGG 0.550138 7_4:+22709226 Msa1145800:CDS
CCACAGTGAATATCCCTCTC+GGG 0.550265 7_4:+22712801 Msa1145800:CDS
GTAAAAGATGCTGCCTTTGG+TGG 0.551743 7_4:+22713608 Msa1145800:three_prime_UTR
CAACGGATCAAACGTGACAA+TGG 0.554887 7_4:+22712671 Msa1145800:CDS
GGAAGGGGAACCTGTCGGAA+AGG 0.556040 7_4:+22712934 Msa1145800:CDS
ATTGATGGGAGGAAGATGTC+TGG 0.558695 7_4:+22709581 Msa1145800:CDS
CGTTGGCTGTGGCTTCTTAG+GGG 0.558699 7_4:-22713389 None:intergenic
CTTGATGGTTTGGCCCGAGA+GGG 0.566622 7_4:-22712814 None:intergenic
CTCACAAGAGTGATTCTAAG+TGG 0.569925 7_4:+22712864 Msa1145800:CDS
TATGGGTTGGGTGTGAAAGT+GGG 0.570602 7_4:+22709266 Msa1145800:CDS
AATGATGACGCCAATGAAAG+TGG 0.572125 7_4:+22709818 Msa1145800:CDS
AAGTAATTATACTTTCTACA+TGG 0.572424 7_4:+22713981 Msa1145800:three_prime_UTR
TCCATGTATGATGATAACCT+TGG 0.573234 7_4:+22712629 Msa1145800:CDS
AGGTATATGAGTACATTGAT+GGG 0.575431 7_4:+22709567 Msa1145800:CDS
TATGCATGACAGGGTTGTTG+TGG 0.578009 7_4:+22708993 Msa1145800:intron
TCATGCCGTTGCCAGGTACA+GGG 0.583742 7_4:+22712968 Msa1145800:CDS
CCATCAACGACATTCTTCAA+AGG 0.584134 7_4:-22709338 None:intergenic
TTCCCGAAGCGTGATTTAGT+GGG 0.584624 7_4:+22709365 Msa1145800:CDS
TTAGCTGCTTCCACCACCAA+AGG 0.585474 7_4:-22713621 None:intergenic
AGTGGAATTTAGACAAAGCA+GGG 0.585551 7_4:+22713068 Msa1145800:CDS
TGTGTAACTAAGGGAATATG+TGG 0.585597 7_4:-22713736 None:intergenic
AAGAGTGATTCTAAGTGGCT+GGG 0.587117 7_4:+22712869 Msa1145800:CDS
TGGTGAAAATGTGTAACTAA+GGG 0.589077 7_4:-22713745 None:intergenic
TAATCACGAGATCTGGAAGA+AGG 0.592207 7_4:+22710015 Msa1145800:CDS
TGGCGATGATGTCTTGATGT+TGG 0.595435 7_4:+22709838 Msa1145800:CDS
GGTTGGGGAAGAATATGGGT+TGG 0.595753 7_4:+22709253 Msa1145800:CDS
GTGTTGGATGATTATGGTGA+GGG 0.596430 7_4:+22709437 Msa1145800:CDS
AGCATGCCTGGATTGTCAGA+TGG 0.597266 7_4:+22709779 Msa1145800:CDS
CAAATTACAATCTTAGACAA+CGG 0.597787 7_4:+22712654 Msa1145800:CDS
AACATCTATCAAGCGAAGCA+GGG 0.599897 7_4:-22713156 None:intergenic
ATTTGATCTAGGTTTATAGG+AGG 0.602115 7_4:-22708307 None:intergenic
GGTTAACCAAAATGCTGCAA+TGG 0.603733 7_4:+22709724 Msa1145800:CDS
TAAGCTGTTCATGGTGGTGA+AGG 0.604654 7_4:+22709184 Msa1145800:CDS
TTGGTGTAGGGTCAGCTATG+AGG 0.610406 7_4:+22713586 Msa1145800:intron
GCGTTTAACGGAGTTGCAGG+CGG 0.610457 7_4:+22709409 Msa1145800:CDS
TCGGAATTTACACCATTGAA+GGG 0.611362 7_4:+22713319 Msa1145800:CDS
GCCAAGAAAGTTGAGAGTGA+AGG 0.613248 7_4:+22709644 Msa1145800:CDS
ATGCAACCCTTGTCACAACC+TGG 0.617563 7_4:-22713765 None:intergenic
ACAAAGCAGGGGAAGAAGTG+AGG 0.617748 7_4:+22713080 Msa1145800:CDS
AAGTATAATTACTTGCCAGT+TGG 0.617938 7_4:-22713972 None:intergenic
AGGTTATCATCATACATGGA+AGG 0.619750 7_4:-22712626 None:intergenic
GCTTGATGGTTTGGCCCGAG+AGG 0.620538 7_4:-22712815 None:intergenic
TCAGGCATTGAACCTAACAC+AGG 0.622398 7_4:-22709968 None:intergenic
AAAGGAAGACAGCTAGTGCA+TGG 0.624413 7_4:+22713421 Msa1145800:CDS
AACATTTCCTAAGAAGAGCA+GGG 0.628463 7_4:+22713198 Msa1145800:CDS
TTGTTTGTAAGAATGAGTTG+TGG 0.633971 7_4:+22709225 Msa1145800:CDS
CAGAACCCTGTACCTGGCAA+CGG 0.636700 7_4:-22712973 None:intergenic
GAACCTAACACAGGATCACA+AGG 0.636857 7_4:-22709959 None:intergenic
CTGACATAGAAACAATGCGC+GGG 0.643470 7_4:+22708464 Msa1145800:five_prime_UTR
CCGAGAGGGATATTCACTGT+GGG 0.648373 7_4:-22712800 None:intergenic
AGAGGGATATTCACTGTGGG+AGG 0.651849 7_4:-22712797 None:intergenic
TTATGGTGAGGGAGATGTCG+GGG 0.658460 7_4:+22709448 Msa1145800:CDS
TTCATGGTGGTGAAGGACAA+AGG 0.665997 7_4:+22709191 Msa1145800:CDS
TATATGAGTACATTGATGGG+AGG 0.668237 7_4:+22709570 Msa1145800:CDS
CTTTAAATAGGTTATATGGG+AGG 0.669244 7_4:+22714025 Msa1145800:three_prime_UTR
ACTCAAGCTGGAAATAGGTG+TGG 0.680587 7_4:+22713036 Msa1145800:CDS
GTGTGATACTAATAGAGTGA+AGG 0.682936 7_4:+22709508 Msa1145800:CDS
GGTGTTGGATGATTATGGTG+AGG 0.685208 7_4:+22709436 Msa1145800:CDS
CCCGAGAGGGATATTCACTG+TGG 0.699432 7_4:-22712801 None:intergenic
ACGGATCAAACGTGACAATG+GGG 0.705546 7_4:+22712673 Msa1145800:CDS
GTTTATAGTAAGTATCTGAG+TGG 0.710441 7_4:+22709305 Msa1145800:CDS
GGGCGATAGAGTTAAGTTTG+GGG 0.715012 7_4:+22709385 Msa1145800:CDS
GTGGAATTTAGACAAAGCAG+GGG 0.723671 7_4:+22713069 Msa1145800:CDS
TTTGTATAAGCTGTTCATGG+TGG 0.747724 7_4:+22709178 Msa1145800:CDS
ATGGTGGTGAAGGACAAAGG+TGG 0.772486 7_4:+22709194 Msa1145800:CDS
TCTGACATAGAAACAATGCG+CGG 0.777334 7_4:+22708463 Msa1145800:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATCTTTTATTTATTTA+TGG + chr7_4:22710353-22710372 Msa1145800:intron 10.0%
!! TAATGTCTTTAAATTAAAAA+AGG - chr7_4:22711854-22711873 None:intergenic 10.0%
!!! AAAGTAATTTTTTACATTTG+CGG + chr7_4:22708648-22708667 Msa1145800:intron 15.0%
!!! TTTGAGGAAAATTTTATTAA+CGG - chr7_4:22708688-22708707 None:intergenic 15.0%
!!! TAATAAAATTTTCCTCAAAT+TGG + chr7_4:22708689-22708708 Msa1145800:intron 15.0%
!!! AATAAAATTTTCCTCAAATT+GGG + chr7_4:22708690-22708709 Msa1145800:intron 15.0%
!! TATTAATTAGATCATACAAT+AGG - chr7_4:22710508-22710527 None:intergenic 15.0%
!!! TTTTTTTATAACCATGTTAT+AGG - chr7_4:22710779-22710798 None:intergenic 15.0%
!! GTTATGAAAAAATGTTAATT+TGG + chr7_4:22710817-22710836 Msa1145800:intron 15.0%
!! ATATTATGAATGAAATAAAG+AGG - chr7_4:22710855-22710874 None:intergenic 15.0%
!! TAAAATTTGAATTCTCTATT+TGG + chr7_4:22711015-22711034 Msa1145800:intron 15.0%
!!! TTTTGTTTATAAAAGACATT+TGG - chr7_4:22711483-22711502 None:intergenic 15.0%
!!! TATCAATGAAGTATTTAATT+TGG - chr7_4:22711631-22711650 None:intergenic 15.0%
!!! AAATTCAAAATTTTGAATTG+TGG - chr7_4:22711681-22711700 None:intergenic 15.0%
!! TTTACTCTAATTCAAAATCT+AGG + chr7_4:22708224-22708243 Msa1145800:five_prime_UTR 20.0%
!! AAGAAAAAATGATTTGATCT+AGG - chr7_4:22708321-22708340 None:intergenic 20.0%
!! TATTCTTCAAAAATCTAAGA+GGG - chr7_4:22708378-22708397 None:intergenic 20.0%
!!! TCTTAGATTTTTGAAGAATA+GGG + chr7_4:22708378-22708397 Msa1145800:five_prime_UTR 20.0%
!!! TTTTTGATGAAAAAAATGGA+GGG - chr7_4:22708434-22708453 None:intergenic 20.0%
!!! AAGTAATTTTTTACATTTGC+GGG + chr7_4:22708649-22708668 Msa1145800:intron 20.0%
!!! AATTTTATTAACGGGTATAT+AGG - chr7_4:22708679-22708698 None:intergenic 20.0%
!!! TTGAGGAAAATTTTATTAAC+GGG - chr7_4:22708687-22708706 None:intergenic 20.0%
!!! TGATGTTTGAAATATAATGT+AGG + chr7_4:22710149-22710168 Msa1145800:intron 20.0%
!!! GATGTTTGAAATATAATGTA+GGG + chr7_4:22710150-22710169 Msa1145800:intron 20.0%
!! ATTATAATGCTAATGACAAA+AGG - chr7_4:22710244-22710263 None:intergenic 20.0%
!! AAAATTACAGGATTAAGTTA+TGG - chr7_4:22710386-22710405 None:intergenic 20.0%
!! ATATTACATTGAAGATTGAA+CGG - chr7_4:22710471-22710490 None:intergenic 20.0%
!! GAAAAAATCAATACTTGATA+AGG + chr7_4:22710579-22710598 Msa1145800:intron 20.0%
!! AAAGAGAATAAACAATACTA+AGG - chr7_4:22710880-22710899 None:intergenic 20.0%
!! AATTTATAGTGCTTATTATG+TGG - chr7_4:22710982-22711001 None:intergenic 20.0%
!! AAAAAGTTTCATATTACTTG+GGG - chr7_4:22711168-22711187 None:intergenic 20.0%
!! CAAAAAGTTTCATATTACTT+GGG - chr7_4:22711169-22711188 None:intergenic 20.0%
!! AATCAATCTATAGAATCTAA+GGG - chr7_4:22712041-22712060 None:intergenic 20.0%
!! ATAAGACAGTAACATAAATT+TGG - chr7_4:22712324-22712343 None:intergenic 20.0%
!!! AACAATTTTTCTGTATCAAA+TGG + chr7_4:22713502-22713521 Msa1145800:intron 20.0%
!!! ATGATTTTATATTCTATGCA+AGG - chr7_4:22713536-22713555 None:intergenic 20.0%
!!! TAAAATCATCATTGCTATTA+AGG + chr7_4:22713547-22713566 Msa1145800:intron 20.0%
!!! TACAATGTGGAAATTATTTT+AGG + chr7_4:22713909-22713928 Msa1145800:three_prime_UTR 20.0%
!! AAGTAATTATACTTTCTACA+TGG + chr7_4:22713981-22714000 Msa1145800:three_prime_UTR 20.0%
! ATGATTTGATCTAGGTTTAT+AGG - chr7_4:22708313-22708332 None:intergenic 25.0%
! CTATTCTTCAAAAATCTAAG+AGG - chr7_4:22708379-22708398 None:intergenic 25.0%
!!! CTCTTAGATTTTTGAAGAAT+AGG + chr7_4:22708377-22708396 Msa1145800:five_prime_UTR 25.0%
!! TTTTGATGAAAAAAATGGAG+GGG - chr7_4:22708433-22708452 None:intergenic 25.0%
!! GTTTTTGATGAAAAAAATGG+AGG - chr7_4:22708435-22708454 None:intergenic 25.0%
!!! GGTGTTTTTGATGAAAAAAA+TGG - chr7_4:22708438-22708457 None:intergenic 25.0%
!! AGATAGTGAGGAAAATTTTT+GGG - chr7_4:22708493-22708512 None:intergenic 25.0%
! TGATGAAATTATTCAATGGA+CGG - chr7_4:22708563-22708582 None:intergenic 25.0%
! CTCTTGATGAAATTATTCAA+TGG - chr7_4:22708567-22708586 None:intergenic 25.0%
!! TCTAATTGTGTCATTGATAA+AGG - chr7_4:22708617-22708636 None:intergenic 25.0%
! GAAAACAAAAAAGCAAAACT+GGG - chr7_4:22708860-22708879 None:intergenic 25.0%
! TGAAAACAAAAAAGCAAAAC+TGG - chr7_4:22708861-22708880 None:intergenic 25.0%
!!! AAAATTGAAACTTTCTAGCT+TGG + chr7_4:22708928-22708947 Msa1145800:intron 25.0%
! AAAGAGATCTAGAAAATGTT+GGG + chr7_4:22709137-22709156 Msa1145800:exon 25.0%
! TCTCTTTATTAACACTAGAT+GGG - chr7_4:22709865-22709884 None:intergenic 25.0%
!!! TCCAAAATCTTTTTTCAGAA+AGG - chr7_4:22710062-22710081 None:intergenic 25.0%
!!! TTTGTTTTTACCTTGTTGAA+TGG + chr7_4:22710316-22710335 Msa1145800:intron 25.0%
!!! GGCATATTATTTTTGCAAAT+GGG - chr7_4:22710434-22710453 None:intergenic 25.0%
! ATAAAGGATAAAACTGCAAA+TGG - chr7_4:22711097-22711116 None:intergenic 25.0%
!!! GCAGTTTTATCCTTTATAAA+AGG + chr7_4:22711100-22711119 Msa1145800:intron 25.0%
!!! TAATGAAGTGCCTTTTATAA+AGG - chr7_4:22711113-22711132 None:intergenic 25.0%
! CCAAAAAGTTTCATATTACT+TGG - chr7_4:22711170-22711189 None:intergenic 25.0%
!! CCAAGTAATATGAAACTTTT+TGG + chr7_4:22711167-22711186 Msa1145800:intron 25.0%
!!! CTTTTGCTGATTTATTTTTG+AGG + chr7_4:22711730-22711749 Msa1145800:intron 25.0%
! ATTTAATGTTACTGTGTGTT+TGG + chr7_4:22711787-22711806 Msa1145800:intron 25.0%
! TTTAATGTTACTGTGTGTTT+GGG + chr7_4:22711788-22711807 Msa1145800:intron 25.0%
! GAATCAATCTATAGAATCTA+AGG - chr7_4:22712042-22712061 None:intergenic 25.0%
! AATTATTCTGTCTATCACAT+TGG + chr7_4:22712088-22712107 Msa1145800:intron 25.0%
!!! AACTTCTATTGCTTTTTTTC+TGG - chr7_4:22712155-22712174 None:intergenic 25.0%
!! TTATGTTACTGTCTTATTGA+AGG + chr7_4:22712327-22712346 Msa1145800:intron 25.0%
!!! AACTTTCTTCTACCATTTTT+AGG + chr7_4:22712589-22712608 Msa1145800:intron 25.0%
! CAAATTACAATCTTAGACAA+CGG + chr7_4:22712654-22712673 Msa1145800:CDS 25.0%
!! AGGACTAATAAAGATTGTTT+TGG + chr7_4:22713567-22713586 Msa1145800:intron 25.0%
!!! AATAAAGATTGTTTTGGTGT+AGG + chr7_4:22713573-22713592 Msa1145800:intron 25.0%
!!! ATAAAGATTGTTTTGGTGTA+GGG + chr7_4:22713574-22713593 Msa1145800:intron 25.0%
!! CACAACAATTTTATTGTAGA+TGG + chr7_4:22713816-22713835 Msa1145800:three_prime_UTR 25.0%
! ATTACATTGACCCTTTAAAT+AGG + chr7_4:22714013-22714032 Msa1145800:three_prime_UTR 25.0%
! ACCCTTTAAATAGGTTATAT+GGG + chr7_4:22714022-22714041 Msa1145800:three_prime_UTR 25.0%
! TCCCATATAACCTATTTAAA+GGG - chr7_4:22714026-22714045 None:intergenic 25.0%
! TTCAAAATCTAGGATCTGTT+TGG + chr7_4:22708234-22708253 Msa1145800:five_prime_UTR 30.0%
! TCAAAATCTAGGATCTGTTT+GGG + chr7_4:22708235-22708254 Msa1145800:five_prime_UTR 30.0%
ATTTGATCTAGGTTTATAGG+AGG - chr7_4:22708310-22708329 None:intergenic 30.0%
!! TTGTTTCTATGTCAGATGAT+TGG - chr7_4:22708459-22708478 None:intergenic 30.0%
! GAGATAGTGAGGAAAATTTT+TGG - chr7_4:22708494-22708513 None:intergenic 30.0%
! AATTTTCCTCACTATCTCTT+AGG + chr7_4:22708496-22708515 Msa1145800:intron 30.0%
! ATTTTCCTCACTATCTCTTA+GGG + chr7_4:22708497-22708516 Msa1145800:intron 30.0%
ATACTGTTACACTACTTGAA+CGG + chr7_4:22708525-22708544 Msa1145800:intron 30.0%
ATGAAATTATTCAATGGACG+GGG - chr7_4:22708561-22708580 None:intergenic 30.0%
GATGAAATTATTCAATGGAC+GGG - chr7_4:22708562-22708581 None:intergenic 30.0%
TGTTAAAGTGAGTGTATTGT+TGG - chr7_4:22708593-22708612 None:intergenic 30.0%
! AATTTTCCTCAAATTGGGTT+TGG + chr7_4:22708695-22708714 Msa1145800:intron 30.0%
AGATATAGAAGAGAGATAGT+AGG - chr7_4:22708732-22708751 None:intergenic 30.0%
!! AAAAGGTACCAGATGAATTT+CGG - chr7_4:22708809-22708828 None:intergenic 30.0%
TTAGCGTAAGAAATGTGAAA+AGG - chr7_4:22708826-22708845 None:intergenic 30.0%
!!! TTTTGTTAGTTTTTGGGATG+CGG + chr7_4:22708896-22708915 Msa1145800:intron 30.0%
!! ATGTTTTTGATATGCATGAC+AGG + chr7_4:22708983-22709002 Msa1145800:intron 30.0%
!! TGTTTTTGATATGCATGACA+GGG + chr7_4:22708984-22709003 Msa1145800:intron 30.0%
ATCTCCAAAAATCTTCTCTA+GGG - chr7_4:22709031-22709050 None:intergenic 30.0%
!! AAGATTTTTGGAGATGAAGA+TGG + chr7_4:22709036-22709055 Msa1145800:five_prime_UTR 30.0%
CTGTTAAGTGTTAAGTTCAT+TGG + chr7_4:22709090-22709109 Msa1145800:five_prime_UTR 30.0%
TTAAGTGTTAAGTTCATTGG+TGG + chr7_4:22709093-22709112 Msa1145800:five_prime_UTR 30.0%
GAAAGAGATCTAGAAAATGT+TGG + chr7_4:22709136-22709155 Msa1145800:exon 30.0%
AGATTTGTATAAGCTGTTCA+TGG + chr7_4:22709175-22709194 Msa1145800:CDS 30.0%
TTGTTTGTAAGAATGAGTTG+TGG + chr7_4:22709225-22709244 Msa1145800:CDS 30.0%
TGTTTGTAAGAATGAGTTGT+GGG + chr7_4:22709226-22709245 Msa1145800:CDS 30.0%
GTTTATAGTAAGTATCTGAG+TGG + chr7_4:22709305-22709324 Msa1145800:CDS 30.0%
AAGGTATATGAGTACATTGA+TGG + chr7_4:22709566-22709585 Msa1145800:CDS 30.0%
AGGTATATGAGTACATTGAT+GGG + chr7_4:22709567-22709586 Msa1145800:CDS 30.0%
CTCTCTTTATTAACACTAGA+TGG - chr7_4:22709866-22709885 None:intergenic 30.0%
AGTGTTAATAAAGAGAGCTT+TGG + chr7_4:22709869-22709888 Msa1145800:CDS 30.0%
AAGTCAAAATGGAAGTCTTA+CGG + chr7_4:22709992-22710011 Msa1145800:CDS 30.0%
!! GCCTTTCTGAAAAAAGATTT+TGG + chr7_4:22710058-22710077 Msa1145800:CDS 30.0%
! TTGCCAATGTTATTTGATGT+TGG + chr7_4:22710217-22710236 Msa1145800:intron 30.0%
!!! GGGCATATTATTTTTGCAAA+TGG - chr7_4:22710435-22710454 None:intergenic 30.0%
! TTGAACGGTACATCTATTTT+GGG - chr7_4:22710456-22710475 None:intergenic 30.0%
! ATTGAACGGTACATCTATTT+TGG - chr7_4:22710457-22710476 None:intergenic 30.0%
ATGCATAATACATGTTGAGT+TGG - chr7_4:22710546-22710565 None:intergenic 30.0%
ATTGATAGAACTACCTACAT+GGG + chr7_4:22710605-22710624 Msa1145800:intron 30.0%
AAAATACATACGTGATGCAA+TGG + chr7_4:22710795-22710814 Msa1145800:intron 30.0%
TTATGTGGCACAAAAACTTA+TGG - chr7_4:22710967-22710986 None:intergenic 30.0%
TTTGAATTTATCACATTCGC+AGG + chr7_4:22711692-22711711 Msa1145800:intron 30.0%
! TATAGAAGACCAAAAGTATG+AGG - chr7_4:22712180-22712199 None:intergenic 30.0%
TCAAGGTAACATCAGAAAAA+GGG - chr7_4:22712379-22712398 None:intergenic 30.0%
TTCAAGGTAACATCAGAAAA+AGG - chr7_4:22712380-22712399 None:intergenic 30.0%
! TGAAGAAATTTCCCTGTTTT+TGG + chr7_4:22712476-22712495 Msa1145800:intron 30.0%
! TAAGATTGTAATTTGTCCCA+AGG - chr7_4:22712649-22712668 None:intergenic 30.0%
! AATCGTAAAATCCGAACTTT+TGG + chr7_4:22712913-22712932 Msa1145800:CDS 30.0%
!! TAAAATCCGAACTTTTGGAA+GGG + chr7_4:22712918-22712937 Msa1145800:CDS 30.0%
TGGTGAAAATGTGTAACTAA+GGG - chr7_4:22713748-22713767 None:intergenic 30.0%
!! GCTGAAGTTCAAGTTAATTT+TGG - chr7_4:22713858-22713877 None:intergenic 30.0%
AGCTTATCTGAGTTTCTATA+TGG + chr7_4:22713875-22713894 Msa1145800:three_prime_UTR 30.0%
!! GGATGTTTTTCAATACAATG+TGG + chr7_4:22713896-22713915 Msa1145800:three_prime_UTR 30.0%
AAGTATAATTACTTGCCAGT+TGG - chr7_4:22713975-22713994 None:intergenic 30.0%
GACCCTTTAAATAGGTTATA+TGG + chr7_4:22714021-22714040 Msa1145800:three_prime_UTR 30.0%
CTCCCATATAACCTATTTAA+AGG - chr7_4:22714027-22714046 None:intergenic 30.0%
CTTTAAATAGGTTATATGGG+AGG + chr7_4:22714025-22714044 Msa1145800:three_prime_UTR 30.0%
TACTGTTACACTACTTGAAC+GGG + chr7_4:22708526-22708545 Msa1145800:intron 35.0%
ATAGAAGAGAGATAGTAGGA+TGG - chr7_4:22708728-22708747 None:intergenic 35.0%
!! TTGTTTTCAGCTTTTTTCCG+TGG + chr7_4:22708872-22708891 Msa1145800:intron 35.0%
!! TGTTTTCAGCTTTTTTCCGT+GGG + chr7_4:22708873-22708892 Msa1145800:intron 35.0%
CCAAAAACTAACAAAACCCA+CGG - chr7_4:22708892-22708911 None:intergenic 35.0%
!!! CGTGGGTTTTGTTAGTTTTT+GGG + chr7_4:22708890-22708909 Msa1145800:intron 35.0%
!!! TTTGTTAGTTTTTGGGATGC+GGG + chr7_4:22708897-22708916 Msa1145800:intron 35.0%
! GAAACCCTAGAGAAGATTTT+TGG + chr7_4:22709024-22709043 Msa1145800:five_prime_UTR 35.0%
CATCTCCAAAAATCTTCTCT+AGG - chr7_4:22709032-22709051 None:intergenic 35.0%
TTTGTATAAGCTGTTCATGG+TGG + chr7_4:22709178-22709197 Msa1145800:CDS 35.0%
TAAGAATGAGTTGTGGGATT+TGG + chr7_4:22709232-22709251 Msa1145800:CDS 35.0%
ATTTGGTTGGGGAAGAATAT+GGG + chr7_4:22709249-22709268 Msa1145800:CDS 35.0%
! GATGAAGTCAAGAGTGTATA+CGG + chr7_4:22709470-22709489 Msa1145800:CDS 35.0%
GTGTGATACTAATAGAGTGA+AGG + chr7_4:22709508-22709527 Msa1145800:CDS 35.0%
TATATGAGTACATTGATGGG+AGG + chr7_4:22709570-22709589 Msa1145800:CDS 35.0%
GTCTGGCACTAATAAAATGA+AGG + chr7_4:22709598-22709617 Msa1145800:CDS 35.0%
CACGAATCTTGTGTCTAATA+TGG + chr7_4:22709622-22709641 Msa1145800:CDS 35.0%
! TTATCTCCATTGCAGCATTT+TGG - chr7_4:22709733-22709752 None:intergenic 35.0%
AAATGCTGCAATGGAGATAA+TGG + chr7_4:22709733-22709752 Msa1145800:CDS 35.0%
GATGTCAGAAATGCAAAGTT+GGG + chr7_4:22709916-22709935 Msa1145800:CDS 35.0%
CAATGCCTGAAAAGTCAAAA+TGG + chr7_4:22709981-22710000 Msa1145800:CDS 35.0%
!!! GACTTCCATTTTGACTTTTC+AGG - chr7_4:22709989-22710008 None:intergenic 35.0%
! GCAATATTTTCCATGATGCA+TGG - chr7_4:22710201-22710220 None:intergenic 35.0%
GGACCAACATCAAATAACAT+TGG - chr7_4:22710223-22710242 None:intergenic 35.0%
AAACACAACATCCATGACTA+CGG - chr7_4:22710288-22710307 None:intergenic 35.0%
TACCTTGTTGAATGGTTGTT+AGG + chr7_4:22710324-22710343 Msa1145800:intron 35.0%
ACCTTGTTGAATGGTTGTTA+GGG + chr7_4:22710325-22710344 Msa1145800:intron 35.0%
GATGGAGAGAGTAAAATTAC+AGG - chr7_4:22710398-22710417 None:intergenic 35.0%
! TGAACGGTACATCTATTTTG+GGG - chr7_4:22710455-22710474 None:intergenic 35.0%
GATTGATAGAACTACCTACA+TGG + chr7_4:22710604-22710623 Msa1145800:intron 35.0%
TTGATAGAACTACCTACATG+GGG + chr7_4:22710606-22710625 Msa1145800:intron 35.0%
GATACTTCGTACCTATAACA+TGG + chr7_4:22710765-22710784 Msa1145800:intron 35.0%
AAAGCAGACAATACCTCATA+AGG - chr7_4:22711065-22711084 None:intergenic 35.0%
!! TTATGAGGTATTGTCTGCTT+TGG + chr7_4:22711064-22711083 Msa1145800:intron 35.0%
!! TATGAGGTATTGTCTGCTTT+GGG + chr7_4:22711065-22711084 Msa1145800:intron 35.0%
!! TATGAAACTTTTTGGTGTGC+CGG + chr7_4:22711175-22711194 Msa1145800:intron 35.0%
CTAAAAGCCTCACATTGTAT+GGG + chr7_4:22711449-22711468 Msa1145800:intron 35.0%
! TAGAATCTAAGGGTGTGTTT+GGG - chr7_4:22712031-22712050 None:intergenic 35.0%
! ATAGAATCTAAGGGTGTGTT+TGG - chr7_4:22712032-22712051 None:intergenic 35.0%
! AGAAGTTTGCCTCATACTTT+TGG + chr7_4:22712168-22712187 Msa1145800:intron 35.0%
!! TACACACACATTCAAGTTGA+GGG - chr7_4:22712216-22712235 None:intergenic 35.0%
!! ATACACACACATTCAAGTTG+AGG - chr7_4:22712217-22712236 None:intergenic 35.0%
ACAATTGCATTTCATGTGAC+AGG + chr7_4:22712288-22712307 Msa1145800:intron 35.0%
ATGTTACCTTGAAACAACAG+AGG + chr7_4:22712387-22712406 Msa1145800:intron 35.0%
TGTTACCTTGAAACAACAGA+GGG + chr7_4:22712388-22712407 Msa1145800:intron 35.0%
ACCTCTATCATCCAAAAACA+GGG - chr7_4:22712490-22712509 None:intergenic 35.0%
TTTGTCTAAATATTGCCACC+TGG + chr7_4:22712545-22712564 Msa1145800:intron 35.0%
ACTCTTGATTCAATGATACC+AGG - chr7_4:22712566-22712585 None:intergenic 35.0%
AGGTTATCATCATACATGGA+AGG - chr7_4:22712629-22712648 None:intergenic 35.0%
TCCATGTATGATGATAACCT+TGG + chr7_4:22712629-22712648 Msa1145800:CDS 35.0%
CCATGTATGATGATAACCTT+GGG + chr7_4:22712630-22712649 Msa1145800:CDS 35.0%
! GAGTAACTTTTCCTTAGCTT+CGG - chr7_4:22712744-22712763 None:intergenic 35.0%
!! AAGAATTGATTCTGGAACAC+AGG - chr7_4:22712771-22712790 None:intergenic 35.0%
! GTAAAATCCGAACTTTTGGA+AGG + chr7_4:22712917-22712936 Msa1145800:CDS 35.0%
!! AAAATCCGAACTTTTGGAAG+GGG + chr7_4:22712919-22712938 Msa1145800:CDS 35.0%
GTCTAAATTCCACTGGTAAA+AGG - chr7_4:22713062-22713081 None:intergenic 35.0%
AGTGGAATTTAGACAAAGCA+GGG + chr7_4:22713068-22713087 Msa1145800:CDS 35.0%
TTCGCTTGATAGATGTTTCT+GGG + chr7_4:22713162-22713181 Msa1145800:CDS 35.0%
TCATCACTGTCAATGTTATC+AGG - chr7_4:22713292-22713311 None:intergenic 35.0%
! TGACAGTGATGATGAAGAAT+CGG + chr7_4:22713300-22713319 Msa1145800:CDS 35.0%
ATCGGAATTTACACCATTGA+AGG + chr7_4:22713318-22713337 Msa1145800:CDS 35.0%
TCGGAATTTACACCATTGAA+GGG + chr7_4:22713319-22713338 Msa1145800:CDS 35.0%
ACAATGAAGCTCATGATTTG+AGG - chr7_4:22713447-22713466 None:intergenic 35.0%
TGTGTAACTAAGGGAATATG+TGG - chr7_4:22713739-22713758 None:intergenic 35.0%
CTGGTGAAAATGTGTAACTA+AGG - chr7_4:22713749-22713768 None:intergenic 35.0%
! CTTAGTTACACATTTTCACC+AGG + chr7_4:22713747-22713766 Msa1145800:three_prime_UTR 35.0%
!!! GTGGAAATTATTTTAGGCTC+AGG + chr7_4:22713915-22713934 Msa1145800:three_prime_UTR 35.0%
! TACCTTTTCTATATGCCAAC+TGG + chr7_4:22713957-22713976 Msa1145800:three_prime_UTR 35.0%
CTAGGTTTATAGGAGGTCTA+TGG - chr7_4:22708303-22708322 None:intergenic 40.0%
TCTGACATAGAAACAATGCG+CGG + chr7_4:22708463-22708482 Msa1145800:five_prime_UTR 40.0%
ACAAACCCTAAGAGATAGTG+AGG - chr7_4:22708505-22708524 None:intergenic 40.0%
TTCTCTCTCCGAAATTCATC+TGG + chr7_4:22708798-22708817 Msa1145800:five_prime_UTR 40.0%
!!! CCGTGGGTTTTGTTAGTTTT+TGG + chr7_4:22708889-22708908 Msa1145800:intron 40.0%
! AATGAGTTGTGGGATTTGGT+TGG + chr7_4:22709236-22709255 Msa1145800:CDS 40.0%
! ATGAGTTGTGGGATTTGGTT+GGG + chr7_4:22709237-22709256 Msa1145800:CDS 40.0%
! GATTTGGTTGGGGAAGAATA+TGG + chr7_4:22709248-22709267 Msa1145800:CDS 40.0%
CCATCAACGACATTCTTCAA+AGG - chr7_4:22709341-22709360 None:intergenic 40.0%
! CCTTTGAAGAATGTCGTTGA+TGG + chr7_4:22709338-22709357 Msa1145800:CDS 40.0%
TGGGCGATAGAGTTAAGTTT+GGG + chr7_4:22709384-22709403 Msa1145800:CDS 40.0%
!! TAAGTTTGGGGAGCGTTTAA+CGG + chr7_4:22709397-22709416 Msa1145800:CDS 40.0%
!! GAGTTGGTGTTGGATGATTA+TGG + chr7_4:22709431-22709450 Msa1145800:CDS 40.0%
GTGTTGGATGATTATGGTGA+GGG + chr7_4:22709437-22709456 Msa1145800:CDS 40.0%
! TCAAGAGTGTATACGGATGT+AGG + chr7_4:22709477-22709496 Msa1145800:CDS 40.0%
TAGAGTGAAGGTTGTGAATC+CGG + chr7_4:22709520-22709539 Msa1145800:CDS 40.0%
TCCTTCACTCTCAACTTTCT+TGG - chr7_4:22709648-22709667 None:intergenic 40.0%
!! TGAGACTAGTCTCAGAAAGT+TGG + chr7_4:22709703-22709722 Msa1145800:CDS 40.0%
GGTTAACCAAAATGCTGCAA+TGG + chr7_4:22709724-22709743 Msa1145800:CDS 40.0%
! AATGATGACGCCAATGAAAG+TGG + chr7_4:22709818-22709837 Msa1145800:CDS 40.0%
! AAGAGAGCTTTGGTCGTAAA+AGG + chr7_4:22709879-22709898 Msa1145800:CDS 40.0%
CGATGTCAGAAATGCAAAGT+TGG + chr7_4:22709915-22709934 Msa1145800:CDS 40.0%
AATCCTTGTGATCCTGTGTT+AGG + chr7_4:22709956-22709975 Msa1145800:CDS 40.0%
TAATCACGAGATCTGGAAGA+AGG + chr7_4:22710015-22710034 Msa1145800:CDS 40.0%
TGTATTCATGTCCGTAGTCA+TGG + chr7_4:22710274-22710293 Msa1145800:intron 40.0%
CCTTGTTGAATGGTTGTTAG+GGG + chr7_4:22710326-22710345 Msa1145800:intron 40.0%
CTTGTTGAATGGTTGTTAGG+GGG + chr7_4:22710327-22710346 Msa1145800:intron 40.0%
AGAGCCTTAAGCAAATGGTA+AGG + chr7_4:22710652-22710671 Msa1145800:intron 40.0%
GAGCCTTAAGCAAATGGTAA+GGG + chr7_4:22710653-22710672 Msa1145800:intron 40.0%
AGCCTTAAGCAAATGGTAAG+GGG + chr7_4:22710654-22710673 Msa1145800:intron 40.0%
CATAAGGAGAATACCCAGTT+GGG + chr7_4:22710696-22710715 Msa1145800:intron 40.0%
AATCTCTGTTGGGTACAAGA+TGG - chr7_4:22710732-22710751 None:intergenic 40.0%
ATCTTGTACCCAACAGAGAT+TGG + chr7_4:22710731-22710750 Msa1145800:intron 40.0%
CAAAAACTTATGGCACATCG+CGG - chr7_4:22710957-22710976 None:intergenic 40.0%
TTACTTGGGGATCGAGTTTA+AGG - chr7_4:22711155-22711174 None:intergenic 40.0%
TTACTCCCTTAGCCTCAATA+GGG - chr7_4:22711210-22711229 None:intergenic 40.0%
TTTACTCCCTTAGCCTCAAT+AGG - chr7_4:22711211-22711230 None:intergenic 40.0%
TATTGAGGCTAAGGGAGTAA+AGG + chr7_4:22711210-22711229 Msa1145800:intron 40.0%
ATTGAGGCTAAGGGAGTAAA+GGG + chr7_4:22711211-22711230 Msa1145800:intron 40.0%
AGGTATTCTGTGACTGATTG+AGG + chr7_4:22711319-22711338 Msa1145800:intron 40.0%
ACTGATTGAGGTCAGAACAT+TGG + chr7_4:22711331-22711350 Msa1145800:intron 40.0%
ATCGAGGCAAAGGGATTAAA+GGG - chr7_4:22711406-22711425 None:intergenic 40.0%
AATCGAGGCAAAGGGATTAA+AGG - chr7_4:22711407-22711426 None:intergenic 40.0%
TCGATTGAGGGCTATTGTTT+CGG + chr7_4:22711421-22711440 Msa1145800:intron 40.0%
! CCATACAATGTGAGGCTTTT+AGG - chr7_4:22711451-22711470 None:intergenic 40.0%
CCTAAAAGCCTCACATTGTA+TGG + chr7_4:22711448-22711467 Msa1145800:intron 40.0%
!! TTCGAGGTATTGTCCACTTT+GGG - chr7_4:22711557-22711576 None:intergenic 40.0%
!! TTTCGAGGTATTGTCCACTT+TGG - chr7_4:22711558-22711577 None:intergenic 40.0%
AAACACAGTGATGTGACTTG+AGG + chr7_4:22711576-22711595 Msa1145800:intron 40.0%
TTACTGTGTGTTTGGGAAGA+GGG + chr7_4:22711795-22711814 Msa1145800:intron 40.0%
!!! TCTGGCTTTTTTGTTGAGCT+TGG - chr7_4:22712137-22712156 None:intergenic 40.0%
!!! TCCCTGTTTTTGGATGATAG+AGG + chr7_4:22712486-22712505 Msa1145800:intron 40.0%
GACCTCTATCATCCAAAAAC+AGG - chr7_4:22712491-22712510 None:intergenic 40.0%
!! ATAGAGGTCTTTTTCGTAGC+TGG + chr7_4:22712502-22712521 Msa1145800:intron 40.0%
CTTGATTCAATGATACCAGG+TGG - chr7_4:22712563-22712582 None:intergenic 40.0%
!! TCTACCATTTTTAGGCTCAG+AGG + chr7_4:22712597-22712616 Msa1145800:intron 40.0%
CCCAAGGTTATCATCATACA+TGG - chr7_4:22712633-22712652 None:intergenic 40.0%
AACGGATCAAACGTGACAAT+GGG + chr7_4:22712672-22712691 Msa1145800:CDS 40.0%
! TTTTCCTTAGCTTCGGAATC+AGG - chr7_4:22712737-22712756 None:intergenic 40.0%
! GGTGCATCAAGAATTGATTC+TGG - chr7_4:22712779-22712798 None:intergenic 40.0%
CTCACAAGAGTGATTCTAAG+TGG + chr7_4:22712864-22712883 Msa1145800:CDS 40.0%
AAGAGTGATTCTAAGTGGCT+GGG + chr7_4:22712869-22712888 Msa1145800:CDS 40.0%
! TCGGATTTTACGATTTGCAG+TGG - chr7_4:22712908-22712927 None:intergenic 40.0%
CTGCTTTGTCTAAATTCCAC+TGG - chr7_4:22713069-22713088 None:intergenic 40.0%
CAGTGGAATTTAGACAAAGC+AGG + chr7_4:22713067-22713086 Msa1145800:CDS 40.0%
GTGGAATTTAGACAAAGCAG+GGG + chr7_4:22713069-22713088 Msa1145800:CDS 40.0%
AACATCTATCAAGCGAAGCA+GGG - chr7_4:22713159-22713178 None:intergenic 40.0%
AAACATCTATCAAGCGAAGC+AGG - chr7_4:22713160-22713179 None:intergenic 40.0%
CTTCGCTTGATAGATGTTTC+TGG + chr7_4:22713161-22713180 Msa1145800:CDS 40.0%
CAACATTTCCTAAGAAGAGC+AGG + chr7_4:22713197-22713216 Msa1145800:CDS 40.0%
TGGCTTCTTAGGGGATAATA+AGG - chr7_4:22713383-22713402 None:intergenic 40.0%
! AGCTGTCTTCCTTTTGTATG+TGG - chr7_4:22713415-22713434 None:intergenic 40.0%
! ATTTTCACCAGGTTGTGACA+AGG + chr7_4:22713758-22713777 Msa1145800:three_prime_UTR 40.0%
! TTTTCACCAGGTTGTGACAA+GGG + chr7_4:22713759-22713778 Msa1145800:three_prime_UTR 40.0%
ACTGTTAAAACAACTGCGTC+AGG + chr7_4:22713789-22713808 Msa1145800:three_prime_UTR 40.0%
TGCCAGTTGGCATATAGAAA+AGG - chr7_4:22713962-22713981 None:intergenic 40.0%
TGGGAGGAGTCAATTGTATT+TGG + chr7_4:22714041-22714060 Msa1145800:three_prime_UTR 40.0%
CTGACATAGAAACAATGCGC+GGG + chr7_4:22708464-22708483 Msa1145800:five_prime_UTR 45.0%
GAGGAACCAAACCCAATTTG+AGG - chr7_4:22708704-22708723 None:intergenic 45.0%
AGAGAGATAGTAGGATGGAG+AGG - chr7_4:22708723-22708742 None:intergenic 45.0%
!!! TTAGTTTTTGGGATGCGGGT+CGG + chr7_4:22708901-22708920 Msa1145800:intron 45.0%
TATGCATGACAGGGTTGTTG+TGG + chr7_4:22708993-22709012 Msa1145800:intron 45.0%
! TAAGCTGTTCATGGTGGTGA+AGG + chr7_4:22709184-22709203 Msa1145800:CDS 45.0%
! TTCATGGTGGTGAAGGACAA+AGG + chr7_4:22709191-22709210 Msa1145800:CDS 45.0%
! TGAGTTGTGGGATTTGGTTG+GGG + chr7_4:22709238-22709257 Msa1145800:CDS 45.0%
GTTGGGGAAGAATATGGGTT+GGG + chr7_4:22709254-22709273 Msa1145800:CDS 45.0%
!! ATATGGGTTGGGTGTGAAAG+TGG + chr7_4:22709265-22709284 Msa1145800:CDS 45.0%
!! TATGGGTTGGGTGTGAAAGT+GGG + chr7_4:22709266-22709285 Msa1145800:CDS 45.0%
TTCCCGAAGCGTGATTTAGT+GGG + chr7_4:22709365-22709384 Msa1145800:CDS 45.0%
GTGGGCGATAGAGTTAAGTT+TGG + chr7_4:22709383-22709402 Msa1145800:CDS 45.0%
GGGCGATAGAGTTAAGTTTG+GGG + chr7_4:22709385-22709404 Msa1145800:CDS 45.0%
! GGTGTTGGATGATTATGGTG+AGG + chr7_4:22709436-22709455 Msa1145800:CDS 45.0%
GATTATGGTGAGGGAGATGT+CGG + chr7_4:22709446-22709465 Msa1145800:CDS 45.0%
ATTATGGTGAGGGAGATGTC+GGG + chr7_4:22709447-22709466 Msa1145800:CDS 45.0%
AGTTCAGTCGCATTCAACTC+CGG - chr7_4:22709542-22709561 None:intergenic 45.0%
GAATGCGACTGAACTCGAAA+AGG + chr7_4:22709547-22709566 Msa1145800:CDS 45.0%
ATTGATGGGAGGAAGATGTC+TGG + chr7_4:22709581-22709600 Msa1145800:CDS 45.0%
GCCAAGAAAGTTGAGAGTGA+AGG + chr7_4:22709644-22709663 Msa1145800:CDS 45.0%
ACTAGTTGACGTGCTTATGC+AGG + chr7_4:22709667-22709686 Msa1145800:CDS 45.0%
! AGGCATGCTGTTTGCTACAT+CGG - chr7_4:22709768-22709787 None:intergenic 45.0%
TTGCTTCCATCTGACAATCC+AGG - chr7_4:22709788-22709807 None:intergenic 45.0%
! GACATCATCGCCACTTTCAT+TGG - chr7_4:22709831-22709850 None:intergenic 45.0%
TGGCGATGATGTCTTGATGT+TGG + chr7_4:22709838-22709857 Msa1145800:CDS 45.0%
GAACCTAACACAGGATCACA+AGG - chr7_4:22709962-22709981 None:intergenic 45.0%
!! TCAGGCATTGAACCTAACAC+AGG - chr7_4:22709971-22709990 None:intergenic 45.0%
CTTACGGTAATCACGAGATC+TGG + chr7_4:22710008-22710027 Msa1145800:CDS 45.0%
CAGACTGTGAAAAACTCAGC+TGG + chr7_4:22710083-22710102 Msa1145800:CDS 45.0%
CCCCTAACAACCATTCAACA+AGG - chr7_4:22710329-22710348 None:intergenic 45.0%
! ATGGGGTTGATTGAGTGGTA+AGG + chr7_4:22710623-22710642 Msa1145800:intron 45.0%
! TGGGGTTGATTGAGTGGTAA+GGG + chr7_4:22710624-22710643 Msa1145800:intron 45.0%
ACTCGAGAGCCTTAAGCAAA+TGG + chr7_4:22710647-22710666 Msa1145800:intron 45.0%
GCCTTAAGCAAATGGTAAGG+GGG + chr7_4:22710655-22710674 Msa1145800:intron 45.0%
ACCCCCTTACCATTTGCTTA+AGG - chr7_4:22710659-22710678 None:intergenic 45.0%
TCTCCTTATGCAAGAGCCAA+GGG - chr7_4:22710686-22710705 None:intergenic 45.0%
TTCTCCTTATGCAAGAGCCA+AGG - chr7_4:22710687-22710706 None:intergenic 45.0%
GCATAAGGAGAATACCCAGT+TGG + chr7_4:22710695-22710714 Msa1145800:intron 45.0%
! TGGATTTTCCACACCCAACT+GGG - chr7_4:22710712-22710731 None:intergenic 45.0%
! ATGGATTTTCCACACCCAAC+TGG - chr7_4:22710713-22710732 None:intergenic 45.0%
! TACCCAACAGAGATTGGTCA+CGG + chr7_4:22710737-22710756 Msa1145800:intron 45.0%
TACCGTGACCAATCTCTGTT+GGG - chr7_4:22710742-22710761 None:intergenic 45.0%
TGGTGTGACGAACTAGAAGT+CGG - chr7_4:22711042-22711061 None:intergenic 45.0%
GCAGACAATACCTCATAAGG+TGG - chr7_4:22711062-22711081 None:intergenic 45.0%
CATTGTGCATGGCTTAAACC+CGG + chr7_4:22711243-22711262 Msa1145800:intron 45.0%
TTAAACCCGGTTCCCACAAA+TGG + chr7_4:22711256-22711275 Msa1145800:intron 45.0%
TCACAGAATACCTCGAAAGG+AGG - chr7_4:22711312-22711331 None:intergenic 45.0%
CAGTCACAGAATACCTCGAA+AGG - chr7_4:22711315-22711334 None:intergenic 45.0%
!! AGAACATTGGTGCCGTCTAT+GGG + chr7_4:22711344-22711363 Msa1145800:intron 45.0%
GGAACCTTGATTCCCATAGA+CGG - chr7_4:22711359-22711378 None:intergenic 45.0%
TAATCCCTTTGCCTCGATTG+AGG + chr7_4:22711408-22711427 Msa1145800:intron 45.0%
AATCCCTTTGCCTCGATTGA+GGG + chr7_4:22711409-22711428 Msa1145800:intron 45.0%
GAAACAATAGCCCTCAATCG+AGG - chr7_4:22711422-22711441 None:intergenic 45.0%
AGCCTCACATTGTATGGGAA+TGG + chr7_4:22711454-22711473 Msa1145800:intron 45.0%
CTCCATTCCCATACAATGTG+AGG - chr7_4:22711459-22711478 None:intergenic 45.0%
CTCACATTGTATGGGAATGG+AGG + chr7_4:22711457-22711476 Msa1145800:intron 45.0%
! GTCACATCACTGTGTTTTCG+AGG - chr7_4:22711573-22711592 None:intergenic 45.0%
ACAGTGATGTGACTTGAGGT+CGG + chr7_4:22711580-22711599 Msa1145800:intron 45.0%
GTTACTGTGTGTTTGGGAAG+AGG + chr7_4:22711794-22711813 Msa1145800:intron 45.0%
TTTGGGAAGAGGGTTTACGA+GGG + chr7_4:22711805-22711824 Msa1145800:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG - chr7_4:22712014-22712033 None:intergenic 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG - chr7_4:22711801-22711820 None:intergenic 45.0%
! TAAGGGTGTGTTTGGGAAGA+GGG - chr7_4:22712024-22712043 None:intergenic 45.0%
!! GTGAACCCTCTGTTGTTTCA+AGG - chr7_4:22712396-22712415 None:intergenic 45.0%
GCATCCTCTGAGCCTAAAAA+TGG - chr7_4:22712604-22712623 None:intergenic 45.0%
CAACGGATCAAACGTGACAA+TGG + chr7_4:22712671-22712690 Msa1145800:CDS 45.0%
ACGGATCAAACGTGACAATG+GGG + chr7_4:22712673-22712692 Msa1145800:CDS 45.0%
!! CGTGACAATGGGGTTTTAGT+TGG + chr7_4:22712683-22712702 Msa1145800:CDS 45.0%
AACACCTGATTCCGAAGCTA+AGG + chr7_4:22712730-22712749 Msa1145800:CDS 45.0%
CAAGAGTGATTCTAAGTGGC+TGG + chr7_4:22712868-22712887 Msa1145800:CDS 45.0%
AGTGGCTGGGAACTCAAATA+TGG + chr7_4:22712882-22712901 Msa1145800:CDS 45.0%
AGGTTCCCCTTCCAAAAGTT+CGG - chr7_4:22712927-22712946 None:intergenic 45.0%
GCTAGACTCAAGCTGGAAAT+AGG + chr7_4:22713031-22713050 Msa1145800:CDS 45.0%
ACTCAAGCTGGAAATAGGTG+TGG + chr7_4:22713036-22713055 Msa1145800:CDS 45.0%
! TATCAGGAGTATGCCTGTTC+TGG - chr7_4:22713276-22713295 None:intergenic 45.0%
!!! ACACCATTGAAGGGTGCTTT+TGG + chr7_4:22713328-22713347 Msa1145800:CDS 45.0%
!! TGTCCAAAAGCACCCTTCAA+TGG - chr7_4:22713334-22713353 None:intergenic 45.0%
! CTTCCTTTTGTATGTGGCGT+TGG - chr7_4:22713409-22713428 None:intergenic 45.0%
AAAGGAAGACAGCTAGTGCA+TGG + chr7_4:22713421-22713440 Msa1145800:CDS 45.0%
GAGGTAAAAGATGCTGCCTT+TGG + chr7_4:22713605-22713624 Msa1145800:three_prime_UTR 45.0%
GTAAAAGATGCTGCCTTTGG+TGG + chr7_4:22713608-22713627 Msa1145800:three_prime_UTR 45.0%
!!! TAGTTTTTGGGATGCGGGTC+GGG + chr7_4:22708902-22708921 Msa1145800:intron 50.0%
! ATGGTGGTGAAGGACAAAGG+TGG + chr7_4:22709194-22709213 Msa1145800:CDS 50.0%
GGTTGGGGAAGAATATGGGT+TGG + chr7_4:22709253-22709272 Msa1145800:CDS 50.0%
! GGGTGTGAAAGTGGGTTCTT+CGG + chr7_4:22709274-22709293 Msa1145800:CDS 50.0%
GTTCCCGAAGCGTGATTTAG+TGG + chr7_4:22709364-22709383 Msa1145800:CDS 50.0%
TCGCCCACTAAATCACGCTT+CGG - chr7_4:22709371-22709390 None:intergenic 50.0%
TTATGGTGAGGGAGATGTCG+GGG + chr7_4:22709448-22709467 Msa1145800:CDS 50.0%
GATGTAGCAAACAGCATGCC+TGG + chr7_4:22709767-22709786 Msa1145800:CDS 50.0%
AGCATGCCTGGATTGTCAGA+TGG + chr7_4:22709779-22709798 Msa1145800:CDS 50.0%
CTGTGAAAAACTCAGCTGGC+TGG + chr7_4:22710087-22710106 Msa1145800:CDS 50.0%
TGTGCTGAGACCATGCATCA+TGG + chr7_4:22710188-22710207 Msa1145800:intron 50.0%
ATGGGTCGCTCATTGTTGGA+TGG - chr7_4:22710416-22710435 None:intergenic 50.0%
GCAAATGGGTCGCTCATTGT+TGG - chr7_4:22710420-22710439 None:intergenic 50.0%
CCACTCAATCAACCCCATGT+AGG - chr7_4:22710621-22710640 None:intergenic 50.0%
! CCTACATGGGGTTGATTGAG+TGG + chr7_4:22710618-22710637 Msa1145800:intron 50.0%
! TGACCCTTGGCTCTTGCATA+AGG + chr7_4:22710680-22710699 Msa1145800:intron 50.0%
CTACCGTGACCAATCTCTGT+TGG - chr7_4:22710743-22710762 None:intergenic 50.0%
! ACAGAGATTGGTCACGGTAG+TGG + chr7_4:22710743-22710762 Msa1145800:intron 50.0%
GTTCGTCACACCACCTTATG+AGG + chr7_4:22711049-22711068 Msa1145800:intron 50.0%
GGTCTGTCAACCATTGTGCA+TGG + chr7_4:22711232-22711251 Msa1145800:intron 50.0%
CGGGTTTAAGCCATGCACAA+TGG - chr7_4:22711245-22711264 None:intergenic 50.0%
GGAACATTGGCGCCATTTGT+GGG - chr7_4:22711271-22711290 None:intergenic 50.0%
CAGACTTGAGGTCGGAACAT+TGG - chr7_4:22711284-22711303 None:intergenic 50.0%
GAATACCTCGAAAGGAGGTG+TGG - chr7_4:22711307-22711326 None:intergenic 50.0%
!! CAGAACATTGGTGCCGTCTA+TGG + chr7_4:22711343-22711362 Msa1145800:intron 50.0%
AGGTTCCATGCCACGTTTGA+TGG + chr7_4:22711372-22711391 Msa1145800:intron 50.0%
TAGCCCTCAATCGAGGCAAA+GGG - chr7_4:22711415-22711434 None:intergenic 50.0%
ATAGCCCTCAATCGAGGCAA+AGG - chr7_4:22711416-22711435 None:intergenic 50.0%
ACACACTCCTCAATCCAACG+AGG + chr7_4:22711502-22711521 Msa1145800:intron 50.0%
AACGAGGCGGACAAAACCAT+GGG + chr7_4:22711518-22711537 Msa1145800:intron 50.0%
AGCTCACACAAGACCCAAAG+TGG + chr7_4:22711541-22711560 Msa1145800:intron 50.0%
GTTTGGGAAGAGGGTTTACG+AGG + chr7_4:22711804-22711823 Msa1145800:intron 50.0%
TTGGGAAGAGGGTTTACGAG+GGG + chr7_4:22711806-22711825 Msa1145800:intron 50.0%
AAGAGGGTTTACGAGGGGAA+GGG + chr7_4:22711811-22711830 Msa1145800:intron 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG - chr7_4:22712008-22712027 None:intergenic 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG - chr7_4:22712013-22712032 None:intergenic 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG - chr7_4:22712015-22712034 None:intergenic 50.0%
! CTAAGGGTGTGTTTGGGAAG+AGG - chr7_4:22712025-22712044 None:intergenic 50.0%
AGAGGGATATTCACTGTGGG+AGG - chr7_4:22712800-22712819 None:intergenic 50.0%
CCGAGAGGGATATTCACTGT+GGG - chr7_4:22712803-22712822 None:intergenic 50.0%
CCCACAGTGAATATCCCTCT+CGG + chr7_4:22712800-22712819 Msa1145800:CDS 50.0%
CCACAGTGAATATCCCTCTC+GGG + chr7_4:22712801-22712820 Msa1145800:CDS 50.0%
! GGCACTTCAGCTTGATGGTT+TGG - chr7_4:22712827-22712846 None:intergenic 50.0%
ATTCGGGCACTTCAGCTTGA+TGG - chr7_4:22712832-22712851 None:intergenic 50.0%
! ATCAAGCTGAAGTGCCCGAA+TGG + chr7_4:22712831-22712850 Msa1145800:CDS 50.0%
TGAGTTGTGCCAGTCCATTC+GGG - chr7_4:22712848-22712867 None:intergenic 50.0%
GTGAGTTGTGCCAGTCCATT+CGG - chr7_4:22712849-22712868 None:intergenic 50.0%
!! CTTTTGGAAGGGGAACCTGT+CGG + chr7_4:22712929-22712948 Msa1145800:CDS 50.0%
TCTTGTCTTCCCTTTCCGAC+AGG - chr7_4:22712947-22712966 None:intergenic 50.0%
ACAAGATTCATGCCGTTGCC+AGG + chr7_4:22712961-22712980 Msa1145800:CDS 50.0%
!! GAAAAGCGCTAGACTCAAGC+TGG + chr7_4:22713024-22713043 Msa1145800:CDS 50.0%
! TAGGTGTGGCCTTTTACCAG+TGG + chr7_4:22713050-22713069 Msa1145800:CDS 50.0%
ACAAAGCAGGGGAAGAAGTG+AGG + chr7_4:22713080-22713099 Msa1145800:CDS 50.0%
! GTCTTTCTTTTGCAGCGCAG+AGG + chr7_4:22713247-22713266 Msa1145800:CDS 50.0%
!! TTTGTATGTGGCGTTGGCTG+TGG - chr7_4:22713403-22713422 None:intergenic 50.0%
CAGCCAACGCCACATACAAA+AGG + chr7_4:22713403-22713422 Msa1145800:CDS 50.0%
TTGGTGTAGGGTCAGCTATG+AGG + chr7_4:22713586-22713605 Msa1145800:intron 50.0%
AAAGATGCTGCCTTTGGTGG+TGG + chr7_4:22713611-22713630 Msa1145800:three_prime_UTR 50.0%
TTAGCTGCTTCCACCACCAA+AGG - chr7_4:22713624-22713643 None:intergenic 50.0%
ATGCAACCCTTGTCACAACC+TGG - chr7_4:22713768-22713787 None:intergenic 50.0%
GACAGGGTTGTTGTGGAGCT+TGG + chr7_4:22709000-22709019 Msa1145800:intron 55.0%
CGCCCACTAAATCACGCTTC+GGG - chr7_4:22709370-22709389 None:intergenic 55.0%
! GGAGCGTTTAACGGAGTTGC+AGG + chr7_4:22709406-22709425 Msa1145800:CDS 55.0%
GCGTTTAACGGAGTTGCAGG+CGG + chr7_4:22709409-22709428 Msa1145800:CDS 55.0%
TGGTAAGGGGGTTTGACCCT+TGG + chr7_4:22710667-22710686 Msa1145800:intron 55.0%
GGAGAATACCCAGTTGGGTG+TGG + chr7_4:22710701-22710720 Msa1145800:intron 55.0%
!! TTTTGGTGTGCCGGAACAGC+AGG + chr7_4:22711184-22711203 Msa1145800:intron 55.0%
CTCAATAGGGCCTGCTGTTC+CGG - chr7_4:22711197-22711216 None:intergenic 55.0%
AGCAGGCCCTATTGAGGCTA+AGG + chr7_4:22711201-22711220 Msa1145800:intron 55.0%
GCAGGCCCTATTGAGGCTAA+GGG + chr7_4:22711202-22711221 Msa1145800:intron 55.0%
TTGGCGCCATTTGTGGGAAC+CGG - chr7_4:22711265-22711284 None:intergenic 55.0%
CGGAACATTGGCGCCATTTG+TGG - chr7_4:22711272-22711291 None:intergenic 55.0%
AGGTGTGGCAGACTTGAGGT+CGG - chr7_4:22711292-22711311 None:intergenic 55.0%
! AAGGAGGTGTGGCAGACTTG+AGG - chr7_4:22711296-22711315 None:intergenic 55.0%
! GGTGCCGTCTATGGGAATCA+AGG + chr7_4:22711352-22711371 Msa1145800:intron 55.0%
GTCAGCCATCAAACGTGGCA+TGG - chr7_4:22711380-22711399 None:intergenic 55.0%
GGTCTGTCAGCCATCAAACG+TGG - chr7_4:22711385-22711404 None:intergenic 55.0%
CACTCCTCAATCCAACGAGG+CGG + chr7_4:22711505-22711524 Msa1145800:intron 55.0%
TTGTCCGCCTCGTTGGATTG+AGG - chr7_4:22711512-22711531 None:intergenic 55.0%
!!! CATGGTTTTGTCCGCCTCGT+TGG - chr7_4:22711519-22711538 None:intergenic 55.0%
CAACGAGGCGGACAAAACCA+TGG + chr7_4:22711517-22711536 Msa1145800:intron 55.0%
GAAGAGGGTTTACGAGGGGA+AGG + chr7_4:22711810-22711829 Msa1145800:intron 55.0%
GAAGAGGGTTTAGGAGGGGA+AGG - chr7_4:22712009-22712028 None:intergenic 55.0%
CCCGAGAGGGATATTCACTG+TGG - chr7_4:22712804-22712823 None:intergenic 55.0%
! CTTGATGGTTTGGCCCGAGA+GGG - chr7_4:22712817-22712836 None:intergenic 55.0%
GAAGGGGAACCTGTCGGAAA+GGG + chr7_4:22712935-22712954 Msa1145800:CDS 55.0%
TTCATGCCGTTGCCAGGTAC+AGG + chr7_4:22712967-22712986 Msa1145800:CDS 55.0%
TCATGCCGTTGCCAGGTACA+GGG + chr7_4:22712968-22712987 Msa1145800:CDS 55.0%
CAGAACCCTGTACCTGGCAA+CGG - chr7_4:22712976-22712995 None:intergenic 55.0%
ACTCGACAGAACCCTGTACC+TGG - chr7_4:22712982-22713001 None:intergenic 55.0%
AGCGCAGAGGATACCAGAAC+AGG + chr7_4:22713260-22713279 Msa1145800:CDS 55.0%
! CGTTGGCTGTGGCTTCTTAG+GGG - chr7_4:22713392-22713411 None:intergenic 55.0%
!! GCGTTGGCTGTGGCTTCTTA+GGG - chr7_4:22713393-22713412 None:intergenic 55.0%
AACGGAGTTGCAGGCGGAGT+TGG + chr7_4:22709415-22709434 Msa1145800:CDS 60.0%
!! GTTGCAGGCGGAGTTGGTGT+TGG + chr7_4:22709421-22709440 Msa1145800:CDS 60.0%
CGGAACAGCAGGCCCTATTG+AGG + chr7_4:22711195-22711214 Msa1145800:intron 60.0%
TGGCGCCATTTGTGGGAACC+GGG - chr7_4:22711264-22711283 None:intergenic 60.0%
GTCTGCCACACCTCCTTTCG+AGG + chr7_4:22711299-22711318 Msa1145800:intron 60.0%
! GGGTCTTGTGTGAGCTCCCA+TGG - chr7_4:22711537-22711556 None:intergenic 60.0%
AGGGTTTACGAGGGGAAGGG+AGG + chr7_4:22711814-22711833 Msa1145800:intron 60.0%
GGGTTTACGAGGGGAAGGGA+GGG + chr7_4:22711815-22711834 Msa1145800:intron 60.0%
GGTTTACGAGGGGAAGGGAG+GGG + chr7_4:22711816-22711835 Msa1145800:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr7_4:22712003-22712022 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr7_4:22712004-22712023 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr7_4:22712005-22712024 None:intergenic 60.0%
! GCTTGATGGTTTGGCCCGAG+AGG - chr7_4:22712818-22712837 None:intergenic 60.0%
! GCTGAAGTGCCCGAATGGAC+TGG + chr7_4:22712836-22712855 Msa1145800:CDS 60.0%
GGAAGGGGAACCTGTCGGAA+AGG + chr7_4:22712934-22712953 Msa1145800:CDS 60.0%
GGGAAGAAGTGAGGCGATGC+TGG + chr7_4:22713089-22713108 Msa1145800:CDS 60.0%
!! GGCGTTGGCTGTGGCTTCTT+AGG - chr7_4:22713394-22713413 None:intergenic 60.0%
TTACGAGGGGAAGGGAGGGG+AGG + chr7_4:22711819-22711838 Msa1145800:intron 65.0%
TACGAGGGGAAGGGAGGGGA+GGG + chr7_4:22711820-22711839 Msa1145800:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr7_4:22711999-22712018 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr7_4:22712000-22712019 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 22708221 22714087 22708221 ID=Msa1145800;Name=Msa1145800
chr7_4 mRNA 22708221 22714087 22708221 ID=Msa1145800-mRNA-1;Parent=Msa1145800;Name=Msa1145800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=520|1|1|1|0.25|0|5|501|600
chr7_4 exon 22708221 22708506 22708221 ID=Msa1145800-mRNA-1:exon:5665;Parent=Msa1145800-mRNA-1
chr7_4 exon 22708733 22708819 22708733 ID=Msa1145800-mRNA-1:exon:5666;Parent=Msa1145800-mRNA-1
chr7_4 exon 22709005 22710108 22709005 ID=Msa1145800-mRNA-1:exon:5667;Parent=Msa1145800-mRNA-1
chr7_4 exon 22712611 22713464 22712611 ID=Msa1145800-mRNA-1:exon:5668;Parent=Msa1145800-mRNA-1
chr7_4 exon 22713595 22714087 22713595 ID=Msa1145800-mRNA-1:exon:5669;Parent=Msa1145800-mRNA-1
chr7_4 five_prime_UTR 22708221 22708506 22708221 ID=Msa1145800-mRNA-1:five_prime_utr;Parent=Msa1145800-mRNA-1
chr7_4 five_prime_UTR 22708733 22708819 22708733 ID=Msa1145800-mRNA-1:five_prime_utr;Parent=Msa1145800-mRNA-1
chr7_4 five_prime_UTR 22709005 22709151 22709005 ID=Msa1145800-mRNA-1:five_prime_utr;Parent=Msa1145800-mRNA-1
chr7_4 CDS 22709152 22710108 22709152 ID=Msa1145800-mRNA-1:cds;Parent=Msa1145800-mRNA-1
chr7_4 CDS 22712611 22713456 22712611 ID=Msa1145800-mRNA-1:cds;Parent=Msa1145800-mRNA-1
chr7_4 three_prime_UTR 22713457 22713464 22713457 ID=Msa1145800-mRNA-1:three_prime_utr;Parent=Msa1145800-mRNA-1
chr7_4 three_prime_UTR 22713595 22714087 22713595 ID=Msa1145800-mRNA-1:three_prime_utr;Parent=Msa1145800-mRNA-1
Gene Sequence

>Msa1145800

ATGTTGGGTAGTGAGCAAACTTTAGATTTGTATAAGCTGTTCATGGTGGTGAAGGACAAAGGTGGTTATGATGTTGTTTGTAAGAATGAGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAAGTGGGTTCTTCGGTTAAACTTGTTTATAGTAAGTATCTGAGTGGTCTAGAGACGCCTTTGAAGAATGTCGTTGATGGTGAGTTCCCGAAGCGTGATTTAGTGGGCGATAGAGTTAAGTTTGGGGAGCGTTTAACGGAGTTGCAGGCGGAGTTGGTGTTGGATGATTATGGTGAGGGAGATGTCGGGGATGAAGTCAAGAGTGTATACGGATGTAGGAAGAAGTTGTGTGATACTAATAGAGTGAAGGTTGTGAATCCGGAGTTGAATGCGACTGAACTCGAAAAGGTATATGAGTACATTGATGGGAGGAAGATGTCTGGCACTAATAAAATGAAGGACACGAATCTTGTGTCTAATATGGCCAAGAAAGTTGAGAGTGAAGGACTAGTTGACGTGCTTATGCAGGATTGTAAGACGAATGAGACTAGTCTCAGAAAGTTGGTTAACCAAAATGCTGCAATGGAGATAATGGATGATGTATCCGATGTAGCAAACAGCATGCCTGGATTGTCAGATGGAAGCAAGAGTTGTGCTAATGATGACGCCAATGAAAGTGGCGATGATGTCTTGATGTTGGACCCATCTAGTGTTAATAAAGAGAGCTTTGGTCGTAAAAGGAAGAGAGACGACTCGATGTCAGAAATGCAAAGTTGGGTTACTAGAACTGCAAAGAATCCTTGTGATCCTGTGTTAGGTTCAATGCCTGAAAAGTCAAAATGGAAGTCTTACGGTAATCACGAGATCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTCTGAAAAAAGATTTTGGATCAGACTGTGAAAAACTCAGCTGGCTGGCTCAGAGGATGCATCCTTCCATGTATGATGATAACCTTGGGACAAATTACAATCTTAGACAACGGATCAAACGTGACAATGGGGTTTTAGTTGGAAAATCTGCATCTATCTTGCAAAGAACACCTGATTCCGAAGCTAAGGAAAAGTTACTCGACTCCTGTGTTCCAGAATCAATTCTTGATGCACCTCCCACAGTGAATATCCCTCTCGGGCCAAACCATCAAGCTGAAGTGCCCGAATGGACTGGCACAACTCACAAGAGTGATTCTAAGTGGCTGGGAACTCAAATATGGCCACTGCAAATCGTAAAATCCGAACTTTTGGAAGGGGAACCTGTCGGAAAGGGAAGACAAGATTCATGCCGTTGCCAGGTACAGGGTTCTGTCGAGTGTGTTCGATTTCACATTGCTGAGAAAAGCGCTAGACTCAAGCTGGAAATAGGTGTGGCCTTTTACCAGTGGAATTTAGACAAAGCAGGGGAAGAAGTGAGGCGATGCTGGACAGCTCAAGAAGAGAAAAAGTTCAAAGATGTAGTGAAATCGAACCCTGCTTCGCTTGATAGATGTTTCTGGGACGATATTTTCACAACATTTCCTAAGAAGAGCAGGGAAAGTTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGATACCAGAACAGGCATACTCCTGATAACATTGACAGTGATGATGAAGAATCGGAATTTACACCATTGAAGGGTGCTTTTGGACATCAAACTGATAAATCAAACAGCATCACCTTATTATCCCCTAAGAAGCCACAGCCAACGCCACATACAAAAGGAAGACAGCTAGTGCATGGCCTCAAATCATGA
Protein sequence

>Msa1145800

MLGSEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEGDVGDEVKSVYGCRKKLCDTNRVKVVNPELNATELEKVYEYIDGRKMSGTNKMKDTNLVSNMAKKVESEGLVDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDGSKSCANDDANESGDDVLMLDPSSVNKESFGRKRKRDDSMSEMQSWVTRTAKNPCDPVLGSMPEKSKWKSYGNHEIWKKVLLFREAAFLKKDFGSDCEKLSWLAQRMHPSMYDDNLGTNYNLRQRIKRDNGVLVGKSASILQRTPDSEAKEKLLDSCVPESILDAPPTVNIPLGPNHQAEVPEWTGTTHKSDSKWLGTQIWPLQIVKSELLEGEPVGKGRQDSCRCQVQGSVECVRFHIAEKSARLKLEIGVAFYQWNLDKAGEEVRRCWTAQEEKKFKDVVKSNPASLDRCFWDDIFTTFPKKSRESLVSYYFNVFLLQRRGYQNRHTPDNIDSDDEESEFTPLKGAFGHQTDKSNSITLLSPKKPQPTPHTKGRQLVHGLKS*