AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112390 MtrunA17_Chr7g0248041 96.667 600 20 0 1 600 1 600 0.0 1200
Msa1112390 MtrunA17_Chr8g0387141 34.725 599 289 16 1 578 67 584 5.66e-91 292
Msa1112390 MtrunA17_Chr8g0348691 50.190 263 111 6 323 568 1 260 2.60e-77 246
Msa1112390 MtrunA17_Chr8g0387181 35.323 402 200 9 231 578 221 616 2.13e-67 231
Msa1112390 MtrunA17_Chr8g0387181 57.377 61 26 0 1 61 60 120 2.81e-12 69.7
Msa1112390 MtrunA17_Chr8g0387161 36.308 325 162 5 259 578 1 285 2.36e-64 213
Msa1112390 MtrunA17_Chr1g0186281 47.917 192 100 0 386 577 381 572 5.18e-57 201
Msa1112390 MtrunA17_Chr1g0186281 52.308 65 31 0 1 65 69 133 2.89e-12 69.7
Msa1112390 MtrunA17_Chr1g0186261 46.354 192 103 0 386 577 384 575 4.01e-55 196
Msa1112390 MtrunA17_Chr1g0186261 52.308 65 31 0 1 65 69 133 3.83e-11 65.9
Msa1112390 MtrunA17_Chr1g0186191 33.053 357 197 5 255 577 234 582 2.46e-54 194
Msa1112390 MtrunA17_Chr1g0186191 53.846 65 30 0 1 65 83 147 2.00e-12 70.1
Msa1112390 MtrunA17_Chr8g0348681 36.170 329 176 8 8 318 16 328 3.26e-47 168
Msa1112390 MtrunA17_Chr6g0479271 32.268 313 181 9 183 483 2 295 1.39e-30 122
Msa1112390 MtrunA17_Chr3g0086341 37.037 189 106 4 378 555 140 326 1.45e-30 125
Msa1112390 MtrunA17_Chr7g0241681 37.870 169 92 3 383 540 190 356 2.70e-30 122
Msa1112390 MtrunA17_Chr7g0241661 32.159 227 135 8 324 534 114 337 1.28e-20 94.0
Msa1112390 MtrunA17_Chr5g0420461 37.234 94 40 1 390 483 90 164 1.78e-13 69.7
Msa1112390 MtrunA17_Chr6g0453251 50.000 58 29 0 1 58 67 124 7.36e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112390 AT2G46040.2 42.042 333 151 8 234 555 243 544 2.71e-67 229
Msa1112390 AT2G46040.3 42.042 333 151 8 234 555 229 530 2.82e-67 229
Msa1112390 AT2G46040.1 42.042 333 151 8 234 555 229 530 2.82e-67 229
Msa1112390 AT4G11400.2 39.823 339 175 7 251 566 218 550 3.61e-63 218
Msa1112390 AT4G11400.1 39.823 339 175 7 251 566 218 550 3.61e-63 218
Msa1112390 AT5G04110.1 40.230 174 92 4 387 549 361 533 2.97e-33 134
Msa1112390 AT5G04110.3 40.230 174 92 4 387 549 361 533 2.97e-33 134
Msa1112390 AT5G04110.2 40.230 174 92 4 387 549 362 534 3.15e-33 134
Msa1112390 AT2G03470.2 31.818 286 165 8 286 555 24 295 2.30e-31 127
Msa1112390 AT2G03470.1 31.707 287 165 8 286 555 24 296 2.95e-31 127
Msa1112390 AT1G13880.1 35.000 200 110 5 383 569 124 316 2.80e-26 112
Msa1112390 AT1G13880.3 35.000 200 110 5 383 569 125 317 2.94e-26 112
Msa1112390 AT1G13880.2 35.000 200 110 5 383 569 134 326 2.98e-26 112
Msa1112390 AT1G26580.3 35.204 196 108 4 378 555 60 254 3.43e-26 112
Msa1112390 AT1G26580.2 35.204 196 108 4 378 555 126 320 5.94e-26 112
Msa1112390 AT1G26580.1 35.204 196 108 4 378 555 126 320 5.94e-26 112
Msa1112390 AT5G04110.4 40.000 145 75 4 387 520 361 504 9.12e-25 108

Find 190 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGCTTGATAGATGTTTC+TGG 0.140839 7_3:-58373623 Msa1112390:CDS
GACCCTTTAAATAGGTTATA+TGG 0.167285 7_3:-58372763 Msa1112390:three_prime_UTR
GCTGAAGTTCAAGTTAATTT+TGG 0.187751 7_3:+58372929 None:intergenic
GGCGCTGGCTGTGGCTTCTT+AGG 0.193098 7_3:+58373393 None:intergenic
GTCTAAATTCCACTGGTAAA+AGG 0.214752 7_3:+58373725 None:intergenic
CTCCCATATAACCTATTTAA+AGG 0.228094 7_3:+58372760 None:intergenic
ATGATTTGATCTAGGTTTAT+AGG 0.228143 7_3:+58378009 None:intergenic
CTCTCTTTATTAACACTAGA+TGG 0.242913 7_3:+58376675 None:intergenic
TCCTTCACTCTCAACTTTCT+TGG 0.243171 7_3:+58376893 None:intergenic
TGGGAGGAGTCAATTGTATT+TGG 0.246024 7_3:-58372743 Msa1112390:three_prime_UTR
AAACTTTCCCTGCTCTTCTT+AGG 0.251694 7_3:+58373579 None:intergenic
TTATCTCCATTGCAGCATTT+TGG 0.260815 7_3:+58376808 None:intergenic
GGTGATGCTGTTTGATTTAT+CGG 0.263321 7_3:+58373425 None:intergenic
AGCTTATCTGAGTTTCTATA+TGG 0.273411 7_3:-58372909 Msa1112390:three_prime_UTR
AATCGTAAAATCCGAACTTT+TGG 0.277183 7_3:-58373871 Msa1112390:CDS
ATTACATTGACCCTTTAAAT+AGG 0.286157 7_3:-58372771 Msa1112390:three_prime_UTR
TTCAAAATCTAGGATCTGTT+TGG 0.288526 7_3:-58378082 Msa1112390:five_prime_UTR
GATCTAGGTTTATAGGTCTA+TGG 0.296352 7_3:+58378016 None:intergenic
GATTTGGTTGGGGAAGAATA+TGG 0.301512 7_3:-58377290 Msa1112390:CDS
AAGAGAGCTTTGGTCGTAAA+AGG 0.302198 7_3:-58376659 Msa1112390:CDS
TTTACTCTAATTCAAAATCT+AGG 0.312892 7_3:-58378092 Msa1112390:five_prime_UTR
CACGAATATTGTGTCTAATA+TGG 0.315937 7_3:-58376916 Msa1112390:CDS
ATTCGGGCACTTCAGCTTGA+TGG 0.324498 7_3:+58373955 None:intergenic
ACACCATTGAAGGGTGCTTT+TGG 0.331159 7_3:-58373456 Msa1112390:CDS
GCGCTGGCTGTGGCTTCTTA+GGG 0.334287 7_3:+58373394 None:intergenic
GGCACTTCAGCTTGATGGTT+TGG 0.334418 7_3:+58373960 None:intergenic
GAAACCCTAGAGAAGAGTTT+TGG 0.338589 7_3:-58377522 Msa1112390:five_prime_UTR
GCTAGACTCAAGCTGGAAAT+AGG 0.340184 7_3:-58373753 Msa1112390:CDS
GGAGCGTTTAACGGAGTTGC+AGG 0.344592 7_3:-58377132 Msa1112390:CDS
TGGGCGATAGAGTTAAGTTT+GGG 0.351590 7_3:-58377154 Msa1112390:CDS
GTGGGCGATAGAGTTAAGTT+TGG 0.357837 7_3:-58377155 Msa1112390:CDS
CTGTTAAGTGTTAAGTTCAT+TGG 0.363043 7_3:-58377456 Msa1112390:five_prime_UTR
ACCCTTTAAATAGGTTATAT+GGG 0.366850 7_3:-58372762 Msa1112390:three_prime_UTR
ATGAGTTGTGGGATTTGGTT+GGG 0.366912 7_3:-58377301 Msa1112390:CDS
AAATGCTGCAATGGAGATAA+TGG 0.367094 7_3:-58376805 Msa1112390:CDS
AATCCTTGTGATCCTGTGTT+AGG 0.370694 7_3:-58376582 Msa1112390:CDS
TAAGAATGAGTTGTGGGATT+TGG 0.371336 7_3:-58377306 Msa1112390:CDS
GTGAGTTGTGCCAGTCCATT+CGG 0.372553 7_3:+58373938 None:intergenic
TCATCACTGTCAATGTTATC+AGG 0.372585 7_3:+58373495 None:intergenic
TTCGCTTGATAGATGTTTCT+GGG 0.372715 7_3:-58373622 Msa1112390:CDS
AAAAGGTACCAGATGAATTT+CGG 0.376007 7_3:+58377740 None:intergenic
GACATCATCGCCACTTTCAT+TGG 0.385220 7_3:+58376710 None:intergenic
AGTGGCTGGGAACTCAAATA+TGG 0.387174 7_3:-58373902 Msa1112390:CDS
GATGAAGTCAAGAGTGTATA+CGG 0.395294 7_3:-58377068 Msa1112390:CDS
CAATGCCTGAAAAGTCAAAA+TGG 0.398546 7_3:-58376557 Msa1112390:CDS
TGGCTTCTTAGGGGATAATA+AGG 0.401536 7_3:+58373404 None:intergenic
GAGTTGGTGTTGGATGATTA+TGG 0.401674 7_3:-58377107 Msa1112390:CDS
TTCATGCCGTTGCCAGGTAC+AGG 0.406356 7_3:-58373817 Msa1112390:CDS
GAAAGAGATCTAGAAAATGT+TGG 0.406581 7_3:-58377402 Msa1112390:exon
AGATTTGTATAAGCTGTTCA+TGG 0.410254 7_3:-58377363 Msa1112390:CDS
GTTGGGGAAGAATATGGGTT+GGG 0.412314 7_3:-58377284 Msa1112390:CDS
TAGAGTGAAGGTTGTGAATC+CGG 0.413505 7_3:-58377018 Msa1112390:CDS
TTCTCTCTCCGAAATTCATC+TGG 0.413861 7_3:-58377748 Msa1112390:intron
TATCAGGAGTATGCCTGTTC+TGG 0.414090 7_3:+58373511 None:intergenic
GGGAAGAAGTGAGGCGATGC+TGG 0.415602 7_3:-58373695 Msa1112390:CDS
GGTGCATCAAGAATTGATTC+TGG 0.415723 7_3:+58374008 None:intergenic
AGGTTCCCCTTCCAAAAGTT+CGG 0.417302 7_3:+58373860 None:intergenic
ATTTGGTTGGGGAAGAATAT+GGG 0.421040 7_3:-58377289 Msa1112390:CDS
AACGGATCAAACGTGACAAT+GGG 0.422576 7_3:-58374112 Msa1112390:CDS
TCAAAATCTAGGATCTGTTT+GGG 0.422914 7_3:-58378081 Msa1112390:five_prime_UTR
CCTTTGAAGAATGTCGTTGA+TGG 0.425457 7_3:-58377200 Msa1112390:CDS
TGAGTTGTGCCAGTCCATTC+GGG 0.426236 7_3:+58373939 None:intergenic
CAAGAGTGATTCTAAGTGGC+TGG 0.427819 7_3:-58373916 Msa1112390:CDS
CGATGTCAGAAATGCAAAGT+TGG 0.431021 7_3:-58376623 Msa1112390:CDS
TCCCATATAACCTATTTAAA+GGG 0.432234 7_3:+58372761 None:intergenic
GGGTGTGAAAGTTGGTTCTT+CGG 0.433272 7_3:-58377264 Msa1112390:CDS
CATCTCCAAAACTCTTCTCT+AGG 0.433495 7_3:+58377517 None:intergenic
AAAGAGATCTAGAAAATGTT+GGG 0.435560 7_3:-58377401 Msa1112390:exon
AAGGTATATGAGTACATTGA+TGG 0.435788 7_3:-58376972 Msa1112390:CDS
TAAGTTTGGGGAGCGTTTAA+CGG 0.437682 7_3:-58377141 Msa1112390:CDS
ACAATGAAGCTCATGATTTG+AGG 0.438613 7_3:+58373340 None:intergenic
AACGGAGTTGCAGGCGGAGT+TGG 0.440717 7_3:-58377123 Msa1112390:CDS
AAACATCTATCAAGCGAAGC+AGG 0.442525 7_3:+58373627 None:intergenic
CTGGTGAAAATGTGTAACTA+AGG 0.443250 7_3:+58373038 None:intergenic
ATCGGAATTTACACCATTGA+AGG 0.444707 7_3:-58373466 Msa1112390:CDS
TTTGTATGTGGCGCTGGCTG+TGG 0.445133 7_3:+58373384 None:intergenic
GTTCCCGAAGCGTGATTTAG+TGG 0.446072 7_3:-58377174 Msa1112390:CDS
GACAGGGTTGTTGTGGAGCT+TGG 0.454931 7_3:-58377546 Msa1112390:intron
CAACATTTCCTAAGAAGAGC+AGG 0.455515 7_3:-58373587 Msa1112390:CDS
AGTGTTAATAAAGAGAGCTT+TGG 0.458202 7_3:-58376669 Msa1112390:CDS
TTAAGTGTTAAGTTCATTGG+TGG 0.469351 7_3:-58377453 Msa1112390:five_prime_UTR
CGCCCACTAAATCACGCTTC+GGG 0.472395 7_3:+58377171 None:intergenic
GATGTAGCAAACAGCATGCC+TGG 0.473778 7_3:-58376771 Msa1112390:CDS
TCGCCCACTAAATCACGCTT+CGG 0.475900 7_3:+58377170 None:intergenic
CCCAAGGTTATCATCATACA+TGG 0.476856 7_3:+58374154 None:intergenic
ATCTCCAAAACTCTTCTCTA+GGG 0.478353 7_3:+58377518 None:intergenic
ACAAGATTCATGCCGTTGCC+AGG 0.482217 7_3:-58373823 Msa1112390:CDS
ACTGTTAAAACAACTGCGTC+AGG 0.482273 7_3:-58372995 Msa1112390:three_prime_UTR
TGACAGTGATGATGAAGAAT+CGG 0.482629 7_3:-58373484 Msa1112390:CDS
CTTACGGTAATCATGAGATC+TGG 0.482890 7_3:-58376530 Msa1112390:CDS
GAGGTAAAAGATGCTGCCTT+TGG 0.483071 7_3:-58373179 Msa1112390:three_prime_UTR
TCTTGTCTTCCCTTTCCGAC+AGG 0.485818 7_3:+58373840 None:intergenic
CAGCCAGCGCCACATACAAA+AGG 0.490899 7_3:-58373381 Msa1112390:CDS
AATGAGTTGTGGGATTTGGT+TGG 0.494085 7_3:-58377302 Msa1112390:CDS
ACTAGTTGACGTGCTTATGC+AGG 0.495122 7_3:-58376871 Msa1112390:CDS
CAGTGGAATTTAGACAAAGC+AGG 0.497895 7_3:-58373717 Msa1112390:CDS
TGCCAGTTGGCATATAGAAA+AGG 0.499279 7_3:+58372825 None:intergenic
GCTGAAGTGCCCGAATGGAC+TGG 0.499421 7_3:-58373948 Msa1112390:CDS
AAGTCAAAATGGAAGTCTTA+CGG 0.503873 7_3:-58376546 Msa1112390:CDS
TCAAGAGTGTATACGGATGT+AGG 0.504450 7_3:-58377061 Msa1112390:CDS
AGCGCAGAGGATACCAGAAC+AGG 0.504565 7_3:-58373524 Msa1112390:CDS
TATGGGTTGGGTGTGAAAGT+TGG 0.508099 7_3:-58377272 Msa1112390:CDS
CCATGTATGATGATAACCTT+GGG 0.511627 7_3:-58374154 Msa1112390:CDS
GATATAGAAGAGAGAGAGTG+AGG 0.512000 7_3:+58377818 None:intergenic
AGTTCAGTCGCATTCAACTC+CGG 0.513469 7_3:+58376999 None:intergenic
CTGCTTTGTCTAAATTCCAC+TGG 0.513826 7_3:+58373718 None:intergenic
TTGTTTCTATGTCAGATGAT+TGG 0.514839 7_3:+58377864 None:intergenic
TAAGATTGTAATTTGTCCCA+AGG 0.519599 7_3:+58374138 None:intergenic
TCTCTTTATTAACACTAGAT+GGG 0.523442 7_3:+58376676 None:intergenic
AAAGATGCTGCCTTTGGTGG+TGG 0.523947 7_3:-58373173 Msa1112390:three_prime_UTR
GAAAAGCGCTAGACTCAAGC+TGG 0.525180 7_3:-58373760 Msa1112390:CDS
CCCACAGTGAATATCCCTCT+CGG 0.526822 7_3:-58373984 Msa1112390:CDS
TGTCCAAAAGCACCCTTCAA+TGG 0.528458 7_3:+58373453 None:intergenic
GATGTCAGAAATGCAAAGTT+GGG 0.528739 7_3:-58376622 Msa1112390:CDS
GTCTGGCACTAATAAAATGA+AGG 0.533480 7_3:-58376940 Msa1112390:CDS
AGGCATGCTGTTTGCTACAT+CGG 0.534517 7_3:+58376773 None:intergenic
GTTGCAGGCGGAGTTGGTGT+TGG 0.535127 7_3:-58377117 Msa1112390:CDS
GAAGGGGAACCTGTCGGAAA+GGG 0.537473 7_3:-58373849 Msa1112390:CDS
AAGAATTGATTCTGGAACAC+AGG 0.538056 7_3:+58374016 None:intergenic
TGAGTTGTGGGATTTGGTTG+GGG 0.538551 7_3:-58377300 Msa1112390:CDS
AACACCTGATTCCGAAGCTA+AGG 0.538928 7_3:-58374054 Msa1112390:CDS
TTGCTTCCATCTGACAATCC+AGG 0.540122 7_3:+58376753 None:intergenic
CGCTGGCTGTGGCTTCTTAG+GGG 0.540587 7_3:+58373395 None:intergenic
TGAGACTAGTCTCAGAAAGT+TGG 0.541534 7_3:-58376835 Msa1112390:CDS
GAATGCGACTGAACTCGAAA+AGG 0.545834 7_3:-58376991 Msa1112390:CDS
ACTCGACAGAACCCTGTACC+TGG 0.548252 7_3:+58373805 None:intergenic
ATCAAGCTGAAGTGCCCGAA+TGG 0.549788 7_3:-58373953 Msa1112390:CDS
TGTTTGTAAGAATGAGTTGT+GGG 0.550138 7_3:-58377312 Msa1112390:CDS
CCACAGTGAATATCCCTCTC+GGG 0.550265 7_3:-58373983 Msa1112390:CDS
GTAAAAGATGCTGCCTTTGG+TGG 0.551743 7_3:-58373176 Msa1112390:three_prime_UTR
CAACGGATCAAACGTGACAA+TGG 0.554887 7_3:-58374113 Msa1112390:CDS
GGAAGGGGAACCTGTCGGAA+AGG 0.556040 7_3:-58373850 Msa1112390:CDS
ATTGATGGGAGGAAGATGTC+TGG 0.558695 7_3:-58376957 Msa1112390:CDS
CTTGATGGTTTGGCCCGAGA+GGG 0.566622 7_3:+58373970 None:intergenic
CTCACAAGAGTGATTCTAAG+TGG 0.569925 7_3:-58373920 Msa1112390:CDS
AATGATGACGCCAATGAAAG+TGG 0.572125 7_3:-58376720 Msa1112390:CDS
AAGTAATTATACTTTCTACA+TGG 0.572424 7_3:-58372803 Msa1112390:three_prime_UTR
TCCATGTATGATGATAACCT+TGG 0.573234 7_3:-58374155 Msa1112390:CDS
TAATCATGAGATCTGGAAGA+AGG 0.575062 7_3:-58376523 Msa1112390:CDS
AGGTATATGAGTACATTGAT+GGG 0.575431 7_3:-58376971 Msa1112390:CDS
TATGCATGACAGGGTTGTTG+TGG 0.578009 7_3:-58377553 Msa1112390:intron
TCATGCCGTTGCCAGGTACA+GGG 0.583742 7_3:-58373816 Msa1112390:CDS
TTCCCGAAGCGTGATTTAGT+GGG 0.584624 7_3:-58377173 Msa1112390:CDS
GTTTATAGTAAGTATTTGAG+TGG 0.584757 7_3:-58377233 Msa1112390:CDS
TTAGCTGCTTCCACCACCAA+AGG 0.585474 7_3:+58373163 None:intergenic
AGTGGAATTTAGACAAAGCA+GGG 0.585551 7_3:-58373716 Msa1112390:CDS
TGTGTAACTAAGGGAATATG+TGG 0.585597 7_3:+58373048 None:intergenic
CCATCAACGACATTCTTCAA+AGG 0.585696 7_3:+58377200 None:intergenic
AAGAGTGATTCTAAGTGGCT+GGG 0.587117 7_3:-58373915 Msa1112390:CDS
TGGTGAAAATGTGTAACTAA+GGG 0.589077 7_3:+58373039 None:intergenic
TGGCGATGATGTCTTGATGT+TGG 0.595435 7_3:-58376700 Msa1112390:CDS
GGTTGGGGAAGAATATGGGT+TGG 0.595753 7_3:-58377285 Msa1112390:CDS
GTGTTGGATGATTATGGTGA+GGG 0.596430 7_3:-58377101 Msa1112390:CDS
AGCATGCCTGGATTGTCAGA+TGG 0.597266 7_3:-58376759 Msa1112390:CDS
CAAATTACAATCTTAGACAA+CGG 0.597787 7_3:-58374130 Msa1112390:CDS
AACATCTATCAAGCGAAGCA+GGG 0.599897 7_3:+58373628 None:intergenic
GGTTAACCAAAATGCTGCAA+TGG 0.603733 7_3:-58376814 Msa1112390:CDS
TAAGCTGTTCATGGTGGTGA+AGG 0.604654 7_3:-58377354 Msa1112390:CDS
TTGGTGTAGGGTCAGCTATG+AGG 0.610406 7_3:-58373198 Msa1112390:intron
GCGTTTAACGGAGTTGCAGG+CGG 0.610457 7_3:-58377129 Msa1112390:CDS
TCGGAATTTACACCATTGAA+GGG 0.611362 7_3:-58373465 Msa1112390:CDS
GCCAAGAAAGTTGAGAGTGA+AGG 0.613248 7_3:-58376894 Msa1112390:CDS
ATGCAACCCTTGTCACAACC+TGG 0.617563 7_3:+58373019 None:intergenic
ACAAAGCAGGGGAAGAAGTG+AGG 0.617748 7_3:-58373704 Msa1112390:CDS
AAGTATAATTACTTGCCAGT+TGG 0.617938 7_3:+58372812 None:intergenic
AGGTTATCATCATACATGGA+AGG 0.619750 7_3:+58374158 None:intergenic
GCTTGATGGTTTGGCCCGAG+AGG 0.620538 7_3:+58373969 None:intergenic
TCAGGCATTGAACCTAACAC+AGG 0.622398 7_3:+58376570 None:intergenic
AAAGGAAGACAGCTAGTGCA+TGG 0.624413 7_3:-58373363 Msa1112390:CDS
AACATTTCCTAAGAAGAGCA+GGG 0.628463 7_3:-58373586 Msa1112390:CDS
TTGTTTGTAAGAATGAGTTG+TGG 0.633971 7_3:-58377313 Msa1112390:CDS
CAGAACCCTGTACCTGGCAA+CGG 0.636700 7_3:+58373811 None:intergenic
GAACCTAACACAGGATCACA+AGG 0.636857 7_3:+58376579 None:intergenic
CTGACATAGAAACAATGCGC+GGG 0.643470 7_3:-58377856 Msa1112390:five_prime_UTR
CCGAGAGGGATATTCACTGT+GGG 0.648373 7_3:+58373984 None:intergenic
AGAGGGATATTCACTGTGGG+AGG 0.651849 7_3:+58373987 None:intergenic
TTCATGGTGGTGAAGGACAA+AGG 0.665997 7_3:-58377347 Msa1112390:CDS
TATATGAGTACATTGATGGG+AGG 0.668237 7_3:-58376968 Msa1112390:CDS
CTTTAAATAGGTTATATGGG+AGG 0.669244 7_3:-58372759 Msa1112390:three_prime_UTR
ACTCAAGCTGGAAATAGGTG+TGG 0.680587 7_3:-58373748 Msa1112390:CDS
GTGTGATACTAATAGAGTGA+AGG 0.682936 7_3:-58377030 Msa1112390:CDS
GGTGTTGGATGATTATGGTG+AGG 0.685208 7_3:-58377102 Msa1112390:CDS
TTATGGTGAGGGAGATGTCG+AGG 0.685970 7_3:-58377090 Msa1112390:CDS
CCCGAGAGGGATATTCACTG+TGG 0.699432 7_3:+58373983 None:intergenic
ACGGATCAAACGTGACAATG+GGG 0.705546 7_3:-58374111 Msa1112390:CDS
GGGCGATAGAGTTAAGTTTG+GGG 0.715012 7_3:-58377153 Msa1112390:CDS
GTGGAATTTAGACAAAGCAG+GGG 0.723671 7_3:-58373715 Msa1112390:CDS
TTTGTATAAGCTGTTCATGG+TGG 0.747724 7_3:-58377360 Msa1112390:CDS
ATGGTGGTGAAGGACAAAGG+TGG 0.772486 7_3:-58377344 Msa1112390:CDS
TCTGACATAGAAACAATGCG+CGG 0.777334 7_3:-58377857 Msa1112390:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATCTTTTATTTATTTA+TGG - chr7_3:58374629-58374648 Msa1112390:intron 10.0%
!! TATTAATTAGATCATACAAT+AGG + chr7_3:58374784-58374803 None:intergenic 15.0%
!!! TTTTTTTATAACCATGTTAT+AGG + chr7_3:58375055-58375074 None:intergenic 15.0%
!! GTTATGAAAAAATGTTAATT+TGG - chr7_3:58375093-58375112 Msa1112390:intron 15.0%
!! ATATTATGAATGAAATAAAG+AGG + chr7_3:58375131-58375150 None:intergenic 15.0%
!! TAAAATTTGAATTCTCTATT+TGG - chr7_3:58375291-58375310 Msa1112390:intron 15.0%
!!! TTTTGTTTATAAAAGACATT+TGG + chr7_3:58375759-58375778 None:intergenic 15.0%
!!! TATCAATGAAGTATTTAATT+TGG + chr7_3:58375907-58375926 None:intergenic 15.0%
!!! AAATTCAAAATTTTGAATTG+TGG + chr7_3:58375957-58375976 None:intergenic 15.0%
!!! AACTTTTATTGATTTTTTTC+TGG + chr7_3:58376185-58376204 None:intergenic 15.0%
!! TTTACTCTAATTCAAAATCT+AGG - chr7_3:58372722-58372741 Msa1112390:three_prime_UTR 20.0%
!! AAGAAAAAATGATTTGATCT+AGG + chr7_3:58372816-58372835 None:intergenic 20.0%
!! TATTCTTCAAAAATCTAAGA+GGG + chr7_3:58372873-58372892 None:intergenic 20.0%
!!! TCTTAGATTTTTGAAGAATA+GGG - chr7_3:58372873-58372892 Msa1112390:three_prime_UTR 20.0%
!!! TGATGTTTGAAATATAATGT+AGG - chr7_3:58374425-58374444 Msa1112390:intron 20.0%
!!! GATGTTTGAAATATAATGTA+GGG - chr7_3:58374426-58374445 Msa1112390:intron 20.0%
!! ATTATAATGCTAATGACAAA+AGG + chr7_3:58374520-58374539 None:intergenic 20.0%
!! AAAATTACAGGATTAAGTTA+TGG + chr7_3:58374662-58374681 None:intergenic 20.0%
!! ATATTACATTGAAGATTGAA+CGG + chr7_3:58374747-58374766 None:intergenic 20.0%
!! GAAAAAATCAATACTTGATA+AGG - chr7_3:58374855-58374874 Msa1112390:intron 20.0%
!! AAAGAGAATAAACAATACTA+AGG + chr7_3:58375156-58375175 None:intergenic 20.0%
!! AATTTATAGTGCTTATTATG+TGG + chr7_3:58375258-58375277 None:intergenic 20.0%
!! AAAAAGTTTCATATTACTTG+GGG + chr7_3:58375444-58375463 None:intergenic 20.0%
!! CAAAAAGTTTCATATTACTT+GGG + chr7_3:58375445-58375464 None:intergenic 20.0%
!! ATAAGACAGTAACATAAATT+TGG + chr7_3:58376354-58376373 None:intergenic 20.0%
!!! AACAATTTTTCTGTATCAAA+TGG - chr7_3:58377532-58377551 Msa1112390:five_prime_UTR 20.0%
!!! ATGATTTTATATTCTATGCA+AGG + chr7_3:58377566-58377585 None:intergenic 20.0%
!!! TAAAATCATCATTGCTATTA+AGG - chr7_3:58377577-58377596 Msa1112390:intron 20.0%
!!! TACAATGTGGAAATTATTTT+AGG - chr7_3:58377939-58377958 Msa1112390:five_prime_UTR 20.0%
!! AAGTAATTATACTTTCTACA+TGG - chr7_3:58378011-58378030 Msa1112390:five_prime_UTR 20.0%
! ATGATTTGATCTAGGTTTAT+AGG + chr7_3:58372808-58372827 None:intergenic 25.0%
! CTATTCTTCAAAAATCTAAG+AGG + chr7_3:58372874-58372893 None:intergenic 25.0%
!!! CTCTTAGATTTTTGAAGAAT+AGG - chr7_3:58372872-58372891 Msa1112390:three_prime_UTR 25.0%
!! TTTTTGATGAAAAAATGGAG+GGG + chr7_3:58372928-58372947 None:intergenic 25.0%
!! GTTTTTGATGAAAAAATGGA+GGG + chr7_3:58372929-58372948 None:intergenic 25.0%
!!! TGTTTTTGATGAAAAAATGG+AGG + chr7_3:58372930-58372949 None:intergenic 25.0%
!!! TGGTGTTTTTGATGAAAAAA+TGG + chr7_3:58372933-58372952 None:intergenic 25.0%
! GAAAACAAAAAAGCAAAACT+GGG + chr7_3:58373128-58373147 None:intergenic 25.0%
! TGAAAACAAAAAAGCAAAAC+TGG + chr7_3:58373129-58373148 None:intergenic 25.0%
!!! AAAATTGAAACTTTCTAGCT+TGG - chr7_3:58373196-58373215 Msa1112390:intron 25.0%
! AAAGAGATCTAGAAAATGTT+GGG - chr7_3:58373413-58373432 Msa1112390:CDS 25.0%
! GTTTATAGTAAGTATTTGAG+TGG - chr7_3:58373581-58373600 Msa1112390:CDS 25.0%
! TCTCTTTATTAACACTAGAT+GGG + chr7_3:58374141-58374160 None:intergenic 25.0%
!!! TCCAAAATCTTTTTTCAGAA+AGG + chr7_3:58374338-58374357 None:intergenic 25.0%
!!! TTTGTTTTTACCTTGTTGAA+TGG - chr7_3:58374592-58374611 Msa1112390:intron 25.0%
!!! GGCATATTATTTTTGCAAAT+GGG + chr7_3:58374710-58374729 None:intergenic 25.0%
!!! ATGCATAATACATTTTGAGT+TGG + chr7_3:58374822-58374841 None:intergenic 25.0%
! ATAAAGGATAAAACTGCAAA+TGG + chr7_3:58375373-58375392 None:intergenic 25.0%
!!! GCAGTTTTATCCTTTATAAA+AGG - chr7_3:58375376-58375395 Msa1112390:intron 25.0%
!!! TAATGAAGTGCCTTTTATAA+AGG + chr7_3:58375389-58375408 None:intergenic 25.0%
! CCAAAAAGTTTCATATTACT+TGG + chr7_3:58375446-58375465 None:intergenic 25.0%
!! CCAAGTAATATGAAACTTTT+TGG - chr7_3:58375443-58375462 Msa1112390:intron 25.0%
! TTTGAATTTATCACATTTGC+AGG - chr7_3:58375968-58375987 Msa1112390:intron 25.0%
!!! CTTTTGCTGATTTATTTTTG+AGG - chr7_3:58376006-58376025 Msa1112390:intron 25.0%
! AATTATTCTGTCTATCACAT+TGG - chr7_3:58376118-58376137 Msa1112390:intron 25.0%
!! TTATGTTACTGTCTTATTGA+AGG - chr7_3:58376357-58376376 Msa1112390:intron 25.0%
!! TGAAGAAATTTCTCTGTTTT+TGG - chr7_3:58376506-58376525 Msa1112390:CDS 25.0%
!!! AACTTTCTTCTACCATTTTT+AGG - chr7_3:58376619-58376638 Msa1112390:CDS 25.0%
! CAAATTACAATCTTAGACAA+CGG - chr7_3:58376684-58376703 Msa1112390:CDS 25.0%
!! AGGACTAATAAAGATTGTTT+TGG - chr7_3:58377597-58377616 Msa1112390:intron 25.0%
!!! AATAAAGATTGTTTTGGTGT+AGG - chr7_3:58377603-58377622 Msa1112390:intron 25.0%
!!! ATAAAGATTGTTTTGGTGTA+GGG - chr7_3:58377604-58377623 Msa1112390:intron 25.0%
!! CACAACAATTTTATTGTAGA+TGG - chr7_3:58377846-58377865 Msa1112390:five_prime_UTR 25.0%
! ATTACATTGACCCTTTAAAT+AGG - chr7_3:58378043-58378062 Msa1112390:five_prime_UTR 25.0%
! ACCCTTTAAATAGGTTATAT+GGG - chr7_3:58378052-58378071 Msa1112390:five_prime_UTR 25.0%
! TCCCATATAACCTATTTAAA+GGG + chr7_3:58378056-58378075 None:intergenic 25.0%
! TTCAAAATCTAGGATCTGTT+TGG - chr7_3:58372732-58372751 Msa1112390:three_prime_UTR 30.0%
! TCAAAATCTAGGATCTGTTT+GGG - chr7_3:58372733-58372752 Msa1112390:three_prime_UTR 30.0%
!! TTGTTTCTATGTCAGATGAT+TGG + chr7_3:58372953-58372972 None:intergenic 30.0%
! AGAGAGTGAGGAAAAATTTT+GGG + chr7_3:58372987-58373006 None:intergenic 30.0%
!! AAAAGGTACCAGATGAATTT+CGG + chr7_3:58373077-58373096 None:intergenic 30.0%
TTAGCGTAAGAAATGTGAAA+AGG + chr7_3:58373094-58373113 None:intergenic 30.0%
!! TTGTTTTCAGCTTTTTTTCG+TGG - chr7_3:58373140-58373159 Msa1112390:three_prime_UTR 30.0%
!! TGTTTTCAGCTTTTTTTCGT+GGG - chr7_3:58373141-58373160 Msa1112390:three_prime_UTR 30.0%
!!! TTTTGTTAGTTTTTGGGATG+CGG - chr7_3:58373164-58373183 Msa1112390:three_prime_UTR 30.0%
!! ATGTTTTTGATATGCATGAC+AGG - chr7_3:58373251-58373270 Msa1112390:intron 30.0%
!! TGTTTTTGATATGCATGACA+GGG - chr7_3:58373252-58373271 Msa1112390:intron 30.0%
CTGTTAAGTGTTAAGTTCAT+TGG - chr7_3:58373358-58373377 Msa1112390:CDS 30.0%
TTAAGTGTTAAGTTCATTGG+TGG - chr7_3:58373361-58373380 Msa1112390:CDS 30.0%
GAAAGAGATCTAGAAAATGT+TGG - chr7_3:58373412-58373431 Msa1112390:CDS 30.0%
AGATTTGTATAAGCTGTTCA+TGG - chr7_3:58373451-58373470 Msa1112390:CDS 30.0%
TTGTTTGTAAGAATGAGTTG+TGG - chr7_3:58373501-58373520 Msa1112390:CDS 30.0%
TGTTTGTAAGAATGAGTTGT+GGG - chr7_3:58373502-58373521 Msa1112390:CDS 30.0%
AAGGTATATGAGTACATTGA+TGG - chr7_3:58373842-58373861 Msa1112390:CDS 30.0%
AGGTATATGAGTACATTGAT+GGG - chr7_3:58373843-58373862 Msa1112390:CDS 30.0%
CACGAATATTGTGTCTAATA+TGG - chr7_3:58373898-58373917 Msa1112390:CDS 30.0%
CTCTCTTTATTAACACTAGA+TGG + chr7_3:58374142-58374161 None:intergenic 30.0%
AGTGTTAATAAAGAGAGCTT+TGG - chr7_3:58374145-58374164 Msa1112390:CDS 30.0%
AAGTCAAAATGGAAGTCTTA+CGG - chr7_3:58374268-58374287 Msa1112390:intron 30.0%
!! GCCTTTCTGAAAAAAGATTT+TGG - chr7_3:58374334-58374353 Msa1112390:intron 30.0%
! TTGCCAATGTTATTTGATGT+TGG - chr7_3:58374493-58374512 Msa1112390:intron 30.0%
!!! GGGCATATTATTTTTGCAAA+TGG + chr7_3:58374711-58374730 None:intergenic 30.0%
ATTGATAGAACTACCTACAT+GGG - chr7_3:58374881-58374900 Msa1112390:intron 30.0%
AAAATACATACGTGATGCAA+TGG - chr7_3:58375071-58375090 Msa1112390:intron 30.0%
TTATGTGGCACAAAAACTTA+TGG + chr7_3:58375243-58375262 None:intergenic 30.0%
! AAAAGTTTGCCTCATACTTT+TGG - chr7_3:58376198-58376217 Msa1112390:intron 30.0%
! TATAGAAGACCAAAAGTATG+AGG + chr7_3:58376210-58376229 None:intergenic 30.0%
TCAAGGTAACATCAGAAAAA+GGG + chr7_3:58376409-58376428 None:intergenic 30.0%
TTCAAGGTAACATCAGAAAA+AGG + chr7_3:58376410-58376429 None:intergenic 30.0%
! TAAGATTGTAATTTGTCCCA+AGG + chr7_3:58376679-58376698 None:intergenic 30.0%
! AATCGTAAAATCCGAACTTT+TGG - chr7_3:58376943-58376962 Msa1112390:CDS 30.0%
!! TAAAATCCGAACTTTTGGAA+GGG - chr7_3:58376948-58376967 Msa1112390:CDS 30.0%
TGGTGAAAATGTGTAACTAA+GGG + chr7_3:58377778-58377797 None:intergenic 30.0%
!! GCTGAAGTTCAAGTTAATTT+TGG + chr7_3:58377888-58377907 None:intergenic 30.0%
AGCTTATCTGAGTTTCTATA+TGG - chr7_3:58377905-58377924 Msa1112390:five_prime_UTR 30.0%
!! GGATGTTTTTCAATACAATG+TGG - chr7_3:58377926-58377945 Msa1112390:five_prime_UTR 30.0%
AAGTATAATTACTTGCCAGT+TGG + chr7_3:58378005-58378024 None:intergenic 30.0%
GACCCTTTAAATAGGTTATA+TGG - chr7_3:58378051-58378070 Msa1112390:five_prime_UTR 30.0%
CTCCCATATAACCTATTTAA+AGG + chr7_3:58378057-58378076 None:intergenic 30.0%
CTTTAAATAGGTTATATGGG+AGG - chr7_3:58378055-58378074 Msa1112390:five_prime_UTR 30.0%
GATCTAGGTTTATAGGTCTA+TGG + chr7_3:58372801-58372820 None:intergenic 35.0%
! GAGAGAGTGAGGAAAAATTT+TGG + chr7_3:58372988-58373007 None:intergenic 35.0%
!!! TCGTGGGTTTTGTTAGTTTT+TGG - chr7_3:58373157-58373176 Msa1112390:three_prime_UTR 35.0%
!!! CGTGGGTTTTGTTAGTTTTT+GGG - chr7_3:58373158-58373177 Msa1112390:three_prime_UTR 35.0%
!!! TTTGTTAGTTTTTGGGATGC+GGG - chr7_3:58373165-58373184 Msa1112390:three_prime_UTR 35.0%
ATCTCCAAAACTCTTCTCTA+GGG + chr7_3:58373299-58373318 None:intergenic 35.0%
!!! AAGAGTTTTGGAGATGAAGA+TGG - chr7_3:58373304-58373323 Msa1112390:intron 35.0%
TTTGTATAAGCTGTTCATGG+TGG - chr7_3:58373454-58373473 Msa1112390:CDS 35.0%
TAAGAATGAGTTGTGGGATT+TGG - chr7_3:58373508-58373527 Msa1112390:CDS 35.0%
ATTTGGTTGGGGAAGAATAT+GGG - chr7_3:58373525-58373544 Msa1112390:CDS 35.0%
! GATGAAGTCAAGAGTGTATA+CGG - chr7_3:58373746-58373765 Msa1112390:CDS 35.0%
GTGTGATACTAATAGAGTGA+AGG - chr7_3:58373784-58373803 Msa1112390:CDS 35.0%
TATATGAGTACATTGATGGG+AGG - chr7_3:58373846-58373865 Msa1112390:CDS 35.0%
GTCTGGCACTAATAAAATGA+AGG - chr7_3:58373874-58373893 Msa1112390:CDS 35.0%
! TTATCTCCATTGCAGCATTT+TGG + chr7_3:58374009-58374028 None:intergenic 35.0%
AAATGCTGCAATGGAGATAA+TGG - chr7_3:58374009-58374028 Msa1112390:CDS 35.0%
GATGTCAGAAATGCAAAGTT+GGG - chr7_3:58374192-58374211 Msa1112390:intron 35.0%
CAATGCCTGAAAAGTCAAAA+TGG - chr7_3:58374257-58374276 Msa1112390:intron 35.0%
!!! GACTTCCATTTTGACTTTTC+AGG + chr7_3:58374265-58374284 None:intergenic 35.0%
TAATCATGAGATCTGGAAGA+AGG - chr7_3:58374291-58374310 Msa1112390:intron 35.0%
! GCAATATTTTCCATGATGCA+TGG + chr7_3:58374477-58374496 None:intergenic 35.0%
GGACCAACATCAAATAACAT+TGG + chr7_3:58374499-58374518 None:intergenic 35.0%
AAACACAACATCCATGACTA+CGG + chr7_3:58374564-58374583 None:intergenic 35.0%
TACCTTGTTGAATGGTTGTT+AGG - chr7_3:58374600-58374619 Msa1112390:intron 35.0%
ACCTTGTTGAATGGTTGTTA+GGG - chr7_3:58374601-58374620 Msa1112390:intron 35.0%
GATGGAGAGAGTAAAATTAC+AGG + chr7_3:58374674-58374693 None:intergenic 35.0%
TTGAACGGTACATCTACTTT+GGG + chr7_3:58374732-58374751 None:intergenic 35.0%
ATTGAACGGTACATCTACTT+TGG + chr7_3:58374733-58374752 None:intergenic 35.0%
GATTGATAGAACTACCTACA+TGG - chr7_3:58374880-58374899 Msa1112390:intron 35.0%
TTGATAGAACTACCTACATG+GGG - chr7_3:58374882-58374901 Msa1112390:intron 35.0%
GATACTTCGTACCTATAACA+TGG - chr7_3:58375041-58375060 Msa1112390:intron 35.0%
AAAGCAGACAATACCTCATA+AGG + chr7_3:58375341-58375360 None:intergenic 35.0%
!! TTATGAGGTATTGTCTGCTT+TGG - chr7_3:58375340-58375359 Msa1112390:intron 35.0%
!! TATGAGGTATTGTCTGCTTT+GGG - chr7_3:58375341-58375360 Msa1112390:intron 35.0%
!! TATGAAACTTTTTGGTGTGC+CGG - chr7_3:58375451-58375470 Msa1112390:intron 35.0%
CTAAAAGCCTCACATTGTAT+GGG - chr7_3:58375725-58375744 Msa1112390:intron 35.0%
!! TACACACACATTCAAGTTGA+GGG + chr7_3:58376246-58376265 None:intergenic 35.0%
!! ATACACACACATTCAAGTTG+AGG + chr7_3:58376247-58376266 None:intergenic 35.0%
ACAATTGCATTTCATGTGAC+AGG - chr7_3:58376318-58376337 Msa1112390:intron 35.0%
ATGTTACCTTGAAACAACAG+AGG - chr7_3:58376417-58376436 Msa1112390:intron 35.0%
TGTTACCTTGAAACAACAGA+GGG - chr7_3:58376418-58376437 Msa1112390:intron 35.0%
!!! TCTCTGTTTTTGGATGATAG+AGG - chr7_3:58376516-58376535 Msa1112390:CDS 35.0%
TTTGTCTAAATATTGCCACC+TGG - chr7_3:58376575-58376594 Msa1112390:CDS 35.0%
ACTCTTGATTCAATGATACC+AGG + chr7_3:58376596-58376615 None:intergenic 35.0%
AGGTTATCATCATACATGGA+AGG + chr7_3:58376659-58376678 None:intergenic 35.0%
TCCATGTATGATGATAACCT+TGG - chr7_3:58376659-58376678 Msa1112390:CDS 35.0%
CCATGTATGATGATAACCTT+GGG - chr7_3:58376660-58376679 Msa1112390:CDS 35.0%
! GAGTAACTTTTCCTTAGCTT+CGG + chr7_3:58376774-58376793 None:intergenic 35.0%
!! AAGAATTGATTCTGGAACAC+AGG + chr7_3:58376801-58376820 None:intergenic 35.0%
! GTAAAATCCGAACTTTTGGA+AGG - chr7_3:58376947-58376966 Msa1112390:CDS 35.0%
!! AAAATCCGAACTTTTGGAAG+GGG - chr7_3:58376949-58376968 Msa1112390:CDS 35.0%
GTCTAAATTCCACTGGTAAA+AGG + chr7_3:58377092-58377111 None:intergenic 35.0%
AGTGGAATTTAGACAAAGCA+GGG - chr7_3:58377098-58377117 Msa1112390:CDS 35.0%
TTCGCTTGATAGATGTTTCT+GGG - chr7_3:58377192-58377211 Msa1112390:CDS 35.0%
AACATTTCCTAAGAAGAGCA+GGG - chr7_3:58377228-58377247 Msa1112390:CDS 35.0%
TCATCACTGTCAATGTTATC+AGG + chr7_3:58377322-58377341 None:intergenic 35.0%
! TGACAGTGATGATGAAGAAT+CGG - chr7_3:58377330-58377349 Msa1112390:CDS 35.0%
ATCGGAATTTACACCATTGA+AGG - chr7_3:58377348-58377367 Msa1112390:CDS 35.0%
TCGGAATTTACACCATTGAA+GGG - chr7_3:58377349-58377368 Msa1112390:CDS 35.0%
! GGTGATGCTGTTTGATTTAT+CGG + chr7_3:58377392-58377411 None:intergenic 35.0%
ACAATGAAGCTCATGATTTG+AGG + chr7_3:58377477-58377496 None:intergenic 35.0%
TGTGTAACTAAGGGAATATG+TGG + chr7_3:58377769-58377788 None:intergenic 35.0%
CTGGTGAAAATGTGTAACTA+AGG + chr7_3:58377779-58377798 None:intergenic 35.0%
! CTTAGTTACACATTTTCACC+AGG - chr7_3:58377777-58377796 Msa1112390:five_prime_UTR 35.0%
!!! GTGGAAATTATTTTAGGCTC+AGG - chr7_3:58377945-58377964 Msa1112390:five_prime_UTR 35.0%
! TACCTTTTCTATATGCCAAC+TGG - chr7_3:58377987-58378006 Msa1112390:five_prime_UTR 35.0%
TCTGACATAGAAACAATGCG+CGG - chr7_3:58372957-58372976 Msa1112390:three_prime_UTR 40.0%
GATATAGAAGAGAGAGAGTG+AGG + chr7_3:58372999-58373018 None:intergenic 40.0%
TTCTCTCTCCGAAATTCATC+TGG - chr7_3:58373066-58373085 Msa1112390:three_prime_UTR 40.0%
! GAAACCCTAGAGAAGAGTTT+TGG - chr7_3:58373292-58373311 Msa1112390:intron 40.0%
CATCTCCAAAACTCTTCTCT+AGG + chr7_3:58373300-58373319 None:intergenic 40.0%
! AATGAGTTGTGGGATTTGGT+TGG - chr7_3:58373512-58373531 Msa1112390:CDS 40.0%
! ATGAGTTGTGGGATTTGGTT+GGG - chr7_3:58373513-58373532 Msa1112390:CDS 40.0%
! GATTTGGTTGGGGAAGAATA+TGG - chr7_3:58373524-58373543 Msa1112390:CDS 40.0%
CCATCAACGACATTCTTCAA+AGG + chr7_3:58373617-58373636 None:intergenic 40.0%
! CCTTTGAAGAATGTCGTTGA+TGG - chr7_3:58373614-58373633 Msa1112390:CDS 40.0%
TGGGCGATAGAGTTAAGTTT+GGG - chr7_3:58373660-58373679 Msa1112390:CDS 40.0%
!! TAAGTTTGGGGAGCGTTTAA+CGG - chr7_3:58373673-58373692 Msa1112390:CDS 40.0%
!! GAGTTGGTGTTGGATGATTA+TGG - chr7_3:58373707-58373726 Msa1112390:CDS 40.0%
GTGTTGGATGATTATGGTGA+GGG - chr7_3:58373713-58373732 Msa1112390:CDS 40.0%
! TCAAGAGTGTATACGGATGT+AGG - chr7_3:58373753-58373772 Msa1112390:CDS 40.0%
TAGAGTGAAGGTTGTGAATC+CGG - chr7_3:58373796-58373815 Msa1112390:CDS 40.0%
TCCTTCACTCTCAACTTTCT+TGG + chr7_3:58373924-58373943 None:intergenic 40.0%
!! TGAGACTAGTCTCAGAAAGT+TGG - chr7_3:58373979-58373998 Msa1112390:CDS 40.0%
GGTTAACCAAAATGCTGCAA+TGG - chr7_3:58374000-58374019 Msa1112390:CDS 40.0%
! AATGATGACGCCAATGAAAG+TGG - chr7_3:58374094-58374113 Msa1112390:CDS 40.0%
! AAGAGAGCTTTGGTCGTAAA+AGG - chr7_3:58374155-58374174 Msa1112390:CDS 40.0%
CGATGTCAGAAATGCAAAGT+TGG - chr7_3:58374191-58374210 Msa1112390:intron 40.0%
AATCCTTGTGATCCTGTGTT+AGG - chr7_3:58374232-58374251 Msa1112390:intron 40.0%
CTTACGGTAATCATGAGATC+TGG - chr7_3:58374284-58374303 Msa1112390:intron 40.0%
TGTATTCATGTCCGTAGTCA+TGG - chr7_3:58374550-58374569 Msa1112390:intron 40.0%
CCTTGTTGAATGGTTGTTAG+GGG - chr7_3:58374602-58374621 Msa1112390:intron 40.0%
CTTGTTGAATGGTTGTTAGG+GGG - chr7_3:58374603-58374622 Msa1112390:intron 40.0%
TGAACGGTACATCTACTTTG+GGG + chr7_3:58374731-58374750 None:intergenic 40.0%
AGAGCCTTAAGCAAATGGTA+AGG - chr7_3:58374928-58374947 Msa1112390:intron 40.0%
GAGCCTTAAGCAAATGGTAA+GGG - chr7_3:58374929-58374948 Msa1112390:intron 40.0%
AGCCTTAAGCAAATGGTAAG+GGG - chr7_3:58374930-58374949 Msa1112390:intron 40.0%
TCTCCTTATGCAAAAGCCAA+GGG + chr7_3:58374962-58374981 None:intergenic 40.0%
TTCTCCTTATGCAAAAGCCA+AGG + chr7_3:58374963-58374982 None:intergenic 40.0%
CATAAGGAGAATACCCAGTT+GGG - chr7_3:58374972-58374991 Msa1112390:intron 40.0%
AATCTCTGTTGGGTACAAGA+TGG + chr7_3:58375008-58375027 None:intergenic 40.0%
ATCTTGTACCCAACAGAGAT+TGG - chr7_3:58375007-58375026 Msa1112390:intron 40.0%
TACCATGACCAATCTCTGTT+GGG + chr7_3:58375018-58375037 None:intergenic 40.0%
CAAAAACTTATGGCACATCG+CGG + chr7_3:58375233-58375252 None:intergenic 40.0%
TTACTTGGGGATCGAGTTTA+AGG + chr7_3:58375431-58375450 None:intergenic 40.0%
TTACTCCCTTAGCCTCAATA+GGG + chr7_3:58375486-58375505 None:intergenic 40.0%
TTTACTCCCTTAGCCTCAAT+AGG + chr7_3:58375487-58375506 None:intergenic 40.0%
TATTGAGGCTAAGGGAGTAA+AGG - chr7_3:58375486-58375505 Msa1112390:intron 40.0%
ATTGAGGCTAAGGGAGTAAA+GGG - chr7_3:58375487-58375506 Msa1112390:intron 40.0%
AGGTATTCTGTGACTGATTG+AGG - chr7_3:58375595-58375614 Msa1112390:intron 40.0%
ACTGATTGAGGTCAGAACAT+TGG - chr7_3:58375607-58375626 Msa1112390:intron 40.0%
ATCGAGGCAAAGGGATTAAA+GGG + chr7_3:58375682-58375701 None:intergenic 40.0%
AATCGAGGCAAAGGGATTAA+AGG + chr7_3:58375683-58375702 None:intergenic 40.0%
TCGATTGAGGGCTATTGTTT+CGG - chr7_3:58375697-58375716 Msa1112390:intron 40.0%
! CCATACAATGTGAGGCTTTT+AGG + chr7_3:58375727-58375746 None:intergenic 40.0%
CCTAAAAGCCTCACATTGTA+TGG - chr7_3:58375724-58375743 Msa1112390:intron 40.0%
!! TTCGAGGTATTGTCCACTTT+GGG + chr7_3:58375833-58375852 None:intergenic 40.0%
!! TTTCGAGGTATTGTCCACTT+TGG + chr7_3:58375834-58375853 None:intergenic 40.0%
AAACACAGTGATGTGACTTG+AGG - chr7_3:58375852-58375871 Msa1112390:intron 40.0%
!!! TCTGGCTTTTTTGTTGAGCT+TGG + chr7_3:58376167-58376186 None:intergenic 40.0%
!! ATAGAGGTCTTTTTCGTAGC+TGG - chr7_3:58376532-58376551 Msa1112390:CDS 40.0%
CTTGATTCAATGATACCAGG+TGG + chr7_3:58376593-58376612 None:intergenic 40.0%
!! TCTACCATTTTTAGGCTCAG+AGG - chr7_3:58376627-58376646 Msa1112390:CDS 40.0%
CCCAAGGTTATCATCATACA+TGG + chr7_3:58376663-58376682 None:intergenic 40.0%
AACGGATCAAACGTGACAAT+GGG - chr7_3:58376702-58376721 Msa1112390:CDS 40.0%
! TTTTCCTTAGCTTCGGAATC+AGG + chr7_3:58376767-58376786 None:intergenic 40.0%
! GGTGCATCAAGAATTGATTC+TGG + chr7_3:58376809-58376828 None:intergenic 40.0%
CTCACAAGAGTGATTCTAAG+TGG - chr7_3:58376894-58376913 Msa1112390:CDS 40.0%
AAGAGTGATTCTAAGTGGCT+GGG - chr7_3:58376899-58376918 Msa1112390:CDS 40.0%
! TCGGATTTTACGATTTGCAG+TGG + chr7_3:58376938-58376957 None:intergenic 40.0%
CTGCTTTGTCTAAATTCCAC+TGG + chr7_3:58377099-58377118 None:intergenic 40.0%
CAGTGGAATTTAGACAAAGC+AGG - chr7_3:58377097-58377116 Msa1112390:CDS 40.0%
GTGGAATTTAGACAAAGCAG+GGG - chr7_3:58377099-58377118 Msa1112390:CDS 40.0%
AACATCTATCAAGCGAAGCA+GGG + chr7_3:58377189-58377208 None:intergenic 40.0%
AAACATCTATCAAGCGAAGC+AGG + chr7_3:58377190-58377209 None:intergenic 40.0%
CTTCGCTTGATAGATGTTTC+TGG - chr7_3:58377191-58377210 Msa1112390:CDS 40.0%
CAACATTTCCTAAGAAGAGC+AGG - chr7_3:58377227-58377246 Msa1112390:CDS 40.0%
AAACTTTCCCTGCTCTTCTT+AGG + chr7_3:58377238-58377257 None:intergenic 40.0%
TGGCTTCTTAGGGGATAATA+AGG + chr7_3:58377413-58377432 None:intergenic 40.0%
! AGCTGTCTTCCTTTTGTATG+TGG + chr7_3:58377445-58377464 None:intergenic 40.0%
! ATTTTCACCAGGTTGTGACA+AGG - chr7_3:58377788-58377807 Msa1112390:five_prime_UTR 40.0%
! TTTTCACCAGGTTGTGACAA+GGG - chr7_3:58377789-58377808 Msa1112390:five_prime_UTR 40.0%
ACTGTTAAAACAACTGCGTC+AGG - chr7_3:58377819-58377838 Msa1112390:five_prime_UTR 40.0%
TGCCAGTTGGCATATAGAAA+AGG + chr7_3:58377992-58378011 None:intergenic 40.0%
TGGGAGGAGTCAATTGTATT+TGG - chr7_3:58378071-58378090 Msa1112390:five_prime_UTR 40.0%
CTGACATAGAAACAATGCGC+GGG - chr7_3:58372958-58372977 Msa1112390:three_prime_UTR 45.0%
!!! TTAGTTTTTGGGATGCGGGT+CGG - chr7_3:58373169-58373188 Msa1112390:three_prime_UTR 45.0%
TATGCATGACAGGGTTGTTG+TGG - chr7_3:58373261-58373280 Msa1112390:intron 45.0%
! TAAGCTGTTCATGGTGGTGA+AGG - chr7_3:58373460-58373479 Msa1112390:CDS 45.0%
! TTCATGGTGGTGAAGGACAA+AGG - chr7_3:58373467-58373486 Msa1112390:CDS 45.0%
! TGAGTTGTGGGATTTGGTTG+GGG - chr7_3:58373514-58373533 Msa1112390:CDS 45.0%
GTTGGGGAAGAATATGGGTT+GGG - chr7_3:58373530-58373549 Msa1112390:CDS 45.0%
!! TATGGGTTGGGTGTGAAAGT+TGG - chr7_3:58373542-58373561 Msa1112390:CDS 45.0%
! GGGTGTGAAAGTTGGTTCTT+CGG - chr7_3:58373550-58373569 Msa1112390:CDS 45.0%
TTCCCGAAGCGTGATTTAGT+GGG - chr7_3:58373641-58373660 Msa1112390:CDS 45.0%
GTGGGCGATAGAGTTAAGTT+TGG - chr7_3:58373659-58373678 Msa1112390:CDS 45.0%
GGGCGATAGAGTTAAGTTTG+GGG - chr7_3:58373661-58373680 Msa1112390:CDS 45.0%
! GGTGTTGGATGATTATGGTG+AGG - chr7_3:58373712-58373731 Msa1112390:CDS 45.0%
AGTTCAGTCGCATTCAACTC+CGG + chr7_3:58373818-58373837 None:intergenic 45.0%
GAATGCGACTGAACTCGAAA+AGG - chr7_3:58373823-58373842 Msa1112390:CDS 45.0%
ATTGATGGGAGGAAGATGTC+TGG - chr7_3:58373857-58373876 Msa1112390:CDS 45.0%
GCCAAGAAAGTTGAGAGTGA+AGG - chr7_3:58373920-58373939 Msa1112390:CDS 45.0%
ACTAGTTGACGTGCTTATGC+AGG - chr7_3:58373943-58373962 Msa1112390:CDS 45.0%
! AGGCATGCTGTTTGCTACAT+CGG + chr7_3:58374044-58374063 None:intergenic 45.0%
TTGCTTCCATCTGACAATCC+AGG + chr7_3:58374064-58374083 None:intergenic 45.0%
! GACATCATCGCCACTTTCAT+TGG + chr7_3:58374107-58374126 None:intergenic 45.0%
TGGCGATGATGTCTTGATGT+TGG - chr7_3:58374114-58374133 Msa1112390:CDS 45.0%
GAACCTAACACAGGATCACA+AGG + chr7_3:58374238-58374257 None:intergenic 45.0%
!! TCAGGCATTGAACCTAACAC+AGG + chr7_3:58374247-58374266 None:intergenic 45.0%
CAGACTGTGAAAAACTCAGC+TGG - chr7_3:58374359-58374378 Msa1112390:intron 45.0%
CCCCTAACAACCATTCAACA+AGG + chr7_3:58374605-58374624 None:intergenic 45.0%
! ATGGGGTTGATTGAGTGGTA+AGG - chr7_3:58374899-58374918 Msa1112390:intron 45.0%
! TGGGGTTGATTGAGTGGTAA+GGG - chr7_3:58374900-58374919 Msa1112390:intron 45.0%
ACTCGAGAGCCTTAAGCAAA+TGG - chr7_3:58374923-58374942 Msa1112390:intron 45.0%
GCCTTAAGCAAATGGTAAGG+GGG - chr7_3:58374931-58374950 Msa1112390:intron 45.0%
ACCCCCTTACCATTTGCTTA+AGG + chr7_3:58374935-58374954 None:intergenic 45.0%
!! TGACCCTTGGCTTTTGCATA+AGG - chr7_3:58374956-58374975 Msa1112390:intron 45.0%
GCATAAGGAGAATACCCAGT+TGG - chr7_3:58374971-58374990 Msa1112390:intron 45.0%
! TGGATTTTCCACACCCAACT+GGG + chr7_3:58374988-58375007 None:intergenic 45.0%
! ATGGATTTTCCACACCCAAC+TGG + chr7_3:58374989-58375008 None:intergenic 45.0%
! TACCCAACAGAGATTGGTCA+TGG - chr7_3:58375013-58375032 Msa1112390:intron 45.0%
CTACCATGACCAATCTCTGT+TGG + chr7_3:58375019-58375038 None:intergenic 45.0%
! ACAGAGATTGGTCATGGTAG+TGG - chr7_3:58375019-58375038 Msa1112390:intron 45.0%
GCAGACAATACCTCATAAGG+CGG + chr7_3:58375338-58375357 None:intergenic 45.0%
GAAACATTGGCGCCATTTGT+GGG + chr7_3:58375547-58375566 None:intergenic 45.0%
TCACAGAATACCTCGAAAGG+AGG + chr7_3:58375588-58375607 None:intergenic 45.0%
CAGTCACAGAATACCTCGAA+AGG + chr7_3:58375591-58375610 None:intergenic 45.0%
!! AGAACATTGGTGCCGTCTAT+GGG - chr7_3:58375620-58375639 Msa1112390:intron 45.0%
GGAACCTTGATTCCCATAGA+CGG + chr7_3:58375635-58375654 None:intergenic 45.0%
TAATCCCTTTGCCTCGATTG+AGG - chr7_3:58375684-58375703 Msa1112390:intron 45.0%
AATCCCTTTGCCTCGATTGA+GGG - chr7_3:58375685-58375704 Msa1112390:intron 45.0%
GAAACAATAGCCCTCAATCG+AGG + chr7_3:58375698-58375717 None:intergenic 45.0%
AGCCTCACATTGTATGGGAA+TGG - chr7_3:58375730-58375749 Msa1112390:intron 45.0%
CTCCATTCCCATACAATGTG+AGG + chr7_3:58375735-58375754 None:intergenic 45.0%
CTCACATTGTATGGGAATGG+AGG - chr7_3:58375733-58375752 Msa1112390:intron 45.0%
! GTCACATCACTGTGTTTTCG+AGG + chr7_3:58375849-58375868 None:intergenic 45.0%
ACAGTGATGTGACTTGAGGT+CGG - chr7_3:58375856-58375875 Msa1112390:intron 45.0%
!! GTGAACCCTCTGTTGTTTCA+AGG + chr7_3:58376426-58376445 None:intergenic 45.0%
GCATCCTCTGAGCCTAAAAA+TGG + chr7_3:58376634-58376653 None:intergenic 45.0%
CAACGGATCAAACGTGACAA+TGG - chr7_3:58376701-58376720 Msa1112390:CDS 45.0%
ACGGATCAAACGTGACAATG+GGG - chr7_3:58376703-58376722 Msa1112390:CDS 45.0%
!! CGTGACAATGGGGTTTTAGT+TGG - chr7_3:58376713-58376732 Msa1112390:CDS 45.0%
AACACCTGATTCCGAAGCTA+AGG - chr7_3:58376760-58376779 Msa1112390:CDS 45.0%
CAAGAGTGATTCTAAGTGGC+TGG - chr7_3:58376898-58376917 Msa1112390:CDS 45.0%
AGTGGCTGGGAACTCAAATA+TGG - chr7_3:58376912-58376931 Msa1112390:CDS 45.0%
AGGTTCCCCTTCCAAAAGTT+CGG + chr7_3:58376957-58376976 None:intergenic 45.0%
GCTAGACTCAAGCTGGAAAT+AGG - chr7_3:58377061-58377080 Msa1112390:CDS 45.0%
ACTCAAGCTGGAAATAGGTG+TGG - chr7_3:58377066-58377085 Msa1112390:CDS 45.0%
! TATCAGGAGTATGCCTGTTC+TGG + chr7_3:58377306-58377325 None:intergenic 45.0%
!!! ACACCATTGAAGGGTGCTTT+TGG - chr7_3:58377358-58377377 Msa1112390:CDS 45.0%
!! TGTCCAAAAGCACCCTTCAA+TGG + chr7_3:58377364-58377383 None:intergenic 45.0%
AAAGGAAGACAGCTAGTGCA+TGG - chr7_3:58377451-58377470 Msa1112390:five_prime_UTR 45.0%
GAGGTAAAAGATGCTGCCTT+TGG - chr7_3:58377635-58377654 Msa1112390:intron 45.0%
GTAAAAGATGCTGCCTTTGG+TGG - chr7_3:58377638-58377657 Msa1112390:intron 45.0%
!!! TAGTTTTTGGGATGCGGGTC+GGG - chr7_3:58373170-58373189 Msa1112390:three_prime_UTR 50.0%
! ATGGTGGTGAAGGACAAAGG+TGG - chr7_3:58373470-58373489 Msa1112390:CDS 50.0%
GGTTGGGGAAGAATATGGGT+TGG - chr7_3:58373529-58373548 Msa1112390:CDS 50.0%
GTTCCCGAAGCGTGATTTAG+TGG - chr7_3:58373640-58373659 Msa1112390:CDS 50.0%
TCGCCCACTAAATCACGCTT+CGG + chr7_3:58373647-58373666 None:intergenic 50.0%
TTATGGTGAGGGAGATGTCG+AGG - chr7_3:58373724-58373743 Msa1112390:CDS 50.0%
GATGTAGCAAACAGCATGCC+TGG - chr7_3:58374043-58374062 Msa1112390:CDS 50.0%
AGCATGCCTGGATTGTCAGA+TGG - chr7_3:58374055-58374074 Msa1112390:CDS 50.0%
CTGTGAAAAACTCAGCTGGC+TGG - chr7_3:58374363-58374382 Msa1112390:intron 50.0%
TGTGCTGAGACCATGCATCA+TGG - chr7_3:58374464-58374483 Msa1112390:intron 50.0%
ATGGGTCGCTCATTGTTGGA+TGG + chr7_3:58374692-58374711 None:intergenic 50.0%
GCAAATGGGTCGCTCATTGT+TGG + chr7_3:58374696-58374715 None:intergenic 50.0%
CCACTCAATCAACCCCATGT+AGG + chr7_3:58374897-58374916 None:intergenic 50.0%
! CCTACATGGGGTTGATTGAG+TGG - chr7_3:58374894-58374913 Msa1112390:intron 50.0%
CGGTGTGACGAACTAGAAGT+CGG + chr7_3:58375318-58375337 None:intergenic 50.0%
GGTCTGTCAACCATTGTGCA+TGG - chr7_3:58375508-58375527 Msa1112390:intron 50.0%
CATTTGTGGGAACGGGGTTT+AGG + chr7_3:58375534-58375553 None:intergenic 50.0%
CTAAACCCCGTTCCCACAAA+TGG - chr7_3:58375532-58375551 Msa1112390:intron 50.0%
ATTGGCGCCATTTGTGGGAA+CGG + chr7_3:58375542-58375561 None:intergenic 50.0%
CGAAACATTGGCGCCATTTG+TGG + chr7_3:58375548-58375567 None:intergenic 50.0%
CGGACTTGAGGTCGAAACAT+TGG + chr7_3:58375560-58375579 None:intergenic 50.0%
GAATACCTCGAAAGGAGGTG+TGG + chr7_3:58375583-58375602 None:intergenic 50.0%
!! CAGAACATTGGTGCCGTCTA+TGG - chr7_3:58375619-58375638 Msa1112390:intron 50.0%
AGGTTCCATGCCACGTTTGA+TGG - chr7_3:58375648-58375667 Msa1112390:intron 50.0%
TAGCCCTCAATCGAGGCAAA+GGG + chr7_3:58375691-58375710 None:intergenic 50.0%
ATAGCCCTCAATCGAGGCAA+AGG + chr7_3:58375692-58375711 None:intergenic 50.0%
ACACACTCCTCAATCCAACG+AGG - chr7_3:58375778-58375797 Msa1112390:intron 50.0%
AACGAGGCGGACAAAACCAT+GGG - chr7_3:58375794-58375813 Msa1112390:intron 50.0%
AGCTCACACAAGACCCAAAG+TGG - chr7_3:58375817-58375836 Msa1112390:intron 50.0%
AGAGGGATATTCACTGTGGG+AGG + chr7_3:58376830-58376849 None:intergenic 50.0%
CCGAGAGGGATATTCACTGT+GGG + chr7_3:58376833-58376852 None:intergenic 50.0%
CCCACAGTGAATATCCCTCT+CGG - chr7_3:58376830-58376849 Msa1112390:CDS 50.0%
CCACAGTGAATATCCCTCTC+GGG - chr7_3:58376831-58376850 Msa1112390:CDS 50.0%
! GGCACTTCAGCTTGATGGTT+TGG + chr7_3:58376857-58376876 None:intergenic 50.0%
ATTCGGGCACTTCAGCTTGA+TGG + chr7_3:58376862-58376881 None:intergenic 50.0%
! ATCAAGCTGAAGTGCCCGAA+TGG - chr7_3:58376861-58376880 Msa1112390:CDS 50.0%
TGAGTTGTGCCAGTCCATTC+GGG + chr7_3:58376878-58376897 None:intergenic 50.0%
GTGAGTTGTGCCAGTCCATT+CGG + chr7_3:58376879-58376898 None:intergenic 50.0%
!! CTTTTGGAAGGGGAACCTGT+CGG - chr7_3:58376959-58376978 Msa1112390:CDS 50.0%
TCTTGTCTTCCCTTTCCGAC+AGG + chr7_3:58376977-58376996 None:intergenic 50.0%
ACAAGATTCATGCCGTTGCC+AGG - chr7_3:58376991-58377010 Msa1112390:CDS 50.0%
!! GAAAAGCGCTAGACTCAAGC+TGG - chr7_3:58377054-58377073 Msa1112390:CDS 50.0%
! TAGGTGTGGCCTTTTACCAG+TGG - chr7_3:58377080-58377099 Msa1112390:CDS 50.0%
ACAAAGCAGGGGAAGAAGTG+AGG - chr7_3:58377110-58377129 Msa1112390:CDS 50.0%
! GTCTTTCTTTTGCAGCGCAG+AGG - chr7_3:58377277-58377296 Msa1112390:CDS 50.0%
! CTTCCTTTTGTATGTGGCGC+TGG + chr7_3:58377439-58377458 None:intergenic 50.0%
TTGGTGTAGGGTCAGCTATG+AGG - chr7_3:58377616-58377635 Msa1112390:intron 50.0%
AAAGATGCTGCCTTTGGTGG+TGG - chr7_3:58377641-58377660 Msa1112390:intron 50.0%
TTAGCTGCTTCCACCACCAA+AGG + chr7_3:58377654-58377673 None:intergenic 50.0%
ATGCAACCCTTGTCACAACC+TGG + chr7_3:58377798-58377817 None:intergenic 50.0%
GACAGGGTTGTTGTGGAGCT+TGG - chr7_3:58373268-58373287 Msa1112390:intron 55.0%
CGCCCACTAAATCACGCTTC+GGG + chr7_3:58373646-58373665 None:intergenic 55.0%
! GGAGCGTTTAACGGAGTTGC+AGG - chr7_3:58373682-58373701 Msa1112390:CDS 55.0%
GCGTTTAACGGAGTTGCAGG+CGG - chr7_3:58373685-58373704 Msa1112390:CDS 55.0%
TGGTAAGGGGGTTTGACCCT+TGG - chr7_3:58374943-58374962 Msa1112390:intron 55.0%
GGAGAATACCCAGTTGGGTG+TGG - chr7_3:58374977-58374996 Msa1112390:intron 55.0%
GTTCGTCACACCGCCTTATG+AGG - chr7_3:58375325-58375344 Msa1112390:intron 55.0%
!! TTTTGGTGTGCCGGAACAGC+AGG - chr7_3:58375460-58375479 Msa1112390:intron 55.0%
CTCAATAGGGCCTGCTGTTC+CGG + chr7_3:58375473-58375492 None:intergenic 55.0%
AGCAGGCCCTATTGAGGCTA+AGG - chr7_3:58375477-58375496 Msa1112390:intron 55.0%
GCAGGCCCTATTGAGGCTAA+GGG - chr7_3:58375478-58375497 Msa1112390:intron 55.0%
GGGGTTTAGGCCATGCACAA+TGG + chr7_3:58375521-58375540 None:intergenic 55.0%
TTGGCGCCATTTGTGGGAAC+GGG + chr7_3:58375541-58375560 None:intergenic 55.0%
! TACCTCGAAAGGAGGTGTGG+CGG + chr7_3:58375580-58375599 None:intergenic 55.0%
! GGTGCCGTCTATGGGAATCA+AGG - chr7_3:58375628-58375647 Msa1112390:intron 55.0%
GTCAGCCATCAAACGTGGCA+TGG + chr7_3:58375656-58375675 None:intergenic 55.0%
GGTCTGTCAGCCATCAAACG+TGG + chr7_3:58375661-58375680 None:intergenic 55.0%
CACTCCTCAATCCAACGAGG+CGG - chr7_3:58375781-58375800 Msa1112390:intron 55.0%
TTGTCCGCCTCGTTGGATTG+AGG + chr7_3:58375788-58375807 None:intergenic 55.0%
!!! CATGGTTTTGTCCGCCTCGT+TGG + chr7_3:58375795-58375814 None:intergenic 55.0%
CAACGAGGCGGACAAAACCA+TGG - chr7_3:58375793-58375812 Msa1112390:intron 55.0%
CCCGAGAGGGATATTCACTG+TGG + chr7_3:58376834-58376853 None:intergenic 55.0%
! CTTGATGGTTTGGCCCGAGA+GGG + chr7_3:58376847-58376866 None:intergenic 55.0%
GAAGGGGAACCTGTCGGAAA+GGG - chr7_3:58376965-58376984 Msa1112390:CDS 55.0%
TTCATGCCGTTGCCAGGTAC+AGG - chr7_3:58376997-58377016 Msa1112390:CDS 55.0%
TCATGCCGTTGCCAGGTACA+GGG - chr7_3:58376998-58377017 Msa1112390:CDS 55.0%
CAGAACCCTGTACCTGGCAA+CGG + chr7_3:58377006-58377025 None:intergenic 55.0%
ACTCGACAGAACCCTGTACC+TGG + chr7_3:58377012-58377031 None:intergenic 55.0%
AGCGCAGAGGATACCAGAAC+AGG - chr7_3:58377290-58377309 Msa1112390:CDS 55.0%
!! TTTGTATGTGGCGCTGGCTG+TGG + chr7_3:58377433-58377452 None:intergenic 55.0%
CAGCCAGCGCCACATACAAA+AGG - chr7_3:58377433-58377452 Msa1112390:five_prime_UTR 55.0%
AACGGAGTTGCAGGCGGAGT+TGG - chr7_3:58373691-58373710 Msa1112390:CDS 60.0%
!! GTTGCAGGCGGAGTTGGTGT+TGG - chr7_3:58373697-58373716 Msa1112390:CDS 60.0%
CGGAACAGCAGGCCCTATTG+AGG - chr7_3:58375471-58375490 Msa1112390:intron 60.0%
TGGCGCCATTTGTGGGAACG+GGG + chr7_3:58375540-58375559 None:intergenic 60.0%
!! AAGGAGGTGTGGCGGACTTG+AGG + chr7_3:58375572-58375591 None:intergenic 60.0%
! GGGTCTTGTGTGAGCTCCCA+TGG + chr7_3:58375813-58375832 None:intergenic 60.0%
! GCTTGATGGTTTGGCCCGAG+AGG + chr7_3:58376848-58376867 None:intergenic 60.0%
! GCTGAAGTGCCCGAATGGAC+TGG - chr7_3:58376866-58376885 Msa1112390:CDS 60.0%
GGAAGGGGAACCTGTCGGAA+AGG - chr7_3:58376964-58376983 Msa1112390:CDS 60.0%
GGGAAGAAGTGAGGCGATGC+TGG - chr7_3:58377119-58377138 Msa1112390:CDS 60.0%
! CGCTGGCTGTGGCTTCTTAG+GGG + chr7_3:58377422-58377441 None:intergenic 60.0%
!! GCGCTGGCTGTGGCTTCTTA+GGG + chr7_3:58377423-58377442 None:intergenic 60.0%
GTCCGCCACACCTCCTTTCG+AGG - chr7_3:58375575-58375594 Msa1112390:intron 65.0%
!! GGCGCTGGCTGTGGCTTCTT+AGG + chr7_3:58377424-58377443 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58372719 58378117 58372719 ID=Msa1112390;Name=Msa1112390
chr7_3 mRNA 58372719 58378117 58372719 ID=Msa1112390-mRNA-1;Parent=Msa1112390;Name=Msa1112390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=524|1|1|1|0.33|0|4|501|600
chr7_3 exon 58372719 58373211 58372719 ID=Msa1112390-mRNA-1:exon:12783;Parent=Msa1112390-mRNA-1
chr7_3 exon 58373342 58374195 58373342 ID=Msa1112390-mRNA-1:exon:12782;Parent=Msa1112390-mRNA-1
chr7_3 exon 58376452 58377563 58376452 ID=Msa1112390-mRNA-1:exon:12781;Parent=Msa1112390-mRNA-1
chr7_3 exon 58377749 58378117 58377749 ID=Msa1112390-mRNA-1:exon:12780;Parent=Msa1112390-mRNA-1
chr7_3 five_prime_UTR 58377749 58378117 58377749 ID=Msa1112390-mRNA-1:five_prime_utr;Parent=Msa1112390-mRNA-1
chr7_3 five_prime_UTR 58377409 58377563 58377409 ID=Msa1112390-mRNA-1:five_prime_utr;Parent=Msa1112390-mRNA-1
chr7_3 CDS 58376452 58377408 58376452 ID=Msa1112390-mRNA-1:cds;Parent=Msa1112390-mRNA-1
chr7_3 CDS 58373350 58374195 58373350 ID=Msa1112390-mRNA-1:cds;Parent=Msa1112390-mRNA-1
chr7_3 three_prime_UTR 58373342 58373349 58373342 ID=Msa1112390-mRNA-1:three_prime_utr;Parent=Msa1112390-mRNA-1
chr7_3 three_prime_UTR 58372719 58373211 58372719 ID=Msa1112390-mRNA-1:three_prime_utr;Parent=Msa1112390-mRNA-1
Gene Sequence

>Msa1112390

ATGTTGGGTAGTGAGCAAACTTTAGATTTGTATAAGCTGTTCATGGTGGTGAAGGACAAAGGTGGTTATGATGTTGTTTGTAAGAATGAGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAAGTTGGTTCTTCGGTTAAACTTGTTTATAGTAAGTATTTGAGTGGTTTAGAGACACCTTTGAAGAATGTCGTTGATGGTGAGTTCCCGAAGCGTGATTTAGTGGGCGATAGAGTTAAGTTTGGGGAGCGTTTAACGGAGTTGCAGGCGGAGTTGGTGTTGGATGATTATGGTGAGGGAGATGTCGAGGATGAAGTCAAGAGTGTATACGGATGTAGGAAGAAGTTGTGTGATACTAATAGAGTGAAGGTTGTGAATCCGGAGTTGAATGCGACTGAACTCGAAAAGGTATATGAGTACATTGATGGGAGGAAGATGTCTGGCACTAATAAAATGAAGGACACGAATATTGTGTCTAATATGGCCAAGAAAGTTGAGAGTGAAGGACTAGTTGACGTGCTTATGCAGGATTGTAAGACGAATGAGACTAGTCTCAGAAAGTTGGTTAACCAAAATGCTGCAATGGAGATAATGGATGATGTATCCGATGTAGCAAACAGCATGCCTGGATTGTCAGATGGAAGCAAGAGTTGTGCTAATGATGACGCCAATGAAAGTGGCGATGATGTCTTGATGTTGGACCCATCTAGTGTTAATAAAGAGAGCTTTGGTCGTAAAAGGAAGAGAGACGACTCGATGTCAGAAATGCAAAGTTGGGTTACTAGAACTGCAAAGAATCCTTGTGATCCTGTGTTAGGTTCAATGCCTGAAAAGTCAAAATGGAAGTCTTACGGTAATCATGAGATCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTCTGAAAAAAGATTTTGGATCAGACTGTGAAAAACTCAGCTGGCTGGCTCAGAGGATGCATCCTTCCATGTATGATGATAACCTTGGGACAAATTACAATCTTAGACAACGGATCAAACGTGACAATGGGGTTTTAGTTGGAAAATCTGCATCTATCTTGCAAAGAACACCTGATTCCGAAGCTAAGGAAAAGTTACTCGACTCCTGTGTTCCAGAATCAATTCTTGATGCACCTCCCACAGTGAATATCCCTCTCGGGCCAAACCATCAAGCTGAAGTGCCCGAATGGACTGGCACAACTCACAAGAGTGATTCTAAGTGGCTGGGAACTCAAATATGGCCACTGCAAATCGTAAAATCCGAACTTTTGGAAGGGGAACCTGTCGGAAAGGGAAGACAAGATTCATGCCGTTGCCAGGTACAGGGTTCTGTCGAGTGTGTTCGATTTCACATTGCTGAGAAAAGCGCTAGACTCAAGCTGGAAATAGGTGTGGCCTTTTACCAGTGGAATTTAGACAAAGCAGGGGAAGAAGTGAGGCGATGCTGGACAACTCAAGAAGAGAAAAAGTTCAAAGATGTAGTGAAATCGAACCCTGCTTCGCTTGATAGATGTTTCTGGGACGATATTTTCACAACATTTCCTAAGAAGAGCAGGGAAAGTTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGATACCAGAACAGGCATACTCCTGATAACATTGACAGTGATGATGAAGAATCGGAATTTACACCATTGAAGGGTGCTTTTGGACATCAAACCGATAAATCAAACAGCATCACCTTATTATCCCCTAAGAAGCCACAGCCAGCGCCACATACAAAAGGAAGACAGCTAGTGCATGGCCTCAAATCATGA
Protein sequence

>Msa1112390

MLGSEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEGDVEDEVKSVYGCRKKLCDTNRVKVVNPELNATELEKVYEYIDGRKMSGTNKMKDTNIVSNMAKKVESEGLVDVLMQDCKTNETSLRKLVNQNAAMEIMDDVSDVANSMPGLSDGSKSCANDDANESGDDVLMLDPSSVNKESFGRKRKRDDSMSEMQSWVTRTAKNPCDPVLGSMPEKSKWKSYGNHEIWKKVLLFREAAFLKKDFGSDCEKLSWLAQRMHPSMYDDNLGTNYNLRQRIKRDNGVLVGKSASILQRTPDSEAKEKLLDSCVPESILDAPPTVNIPLGPNHQAEVPEWTGTTHKSDSKWLGTQIWPLQIVKSELLEGEPVGKGRQDSCRCQVQGSVECVRFHIAEKSARLKLEIGVAFYQWNLDKAGEEVRRCWTTQEEKKFKDVVKSNPASLDRCFWDDIFTTFPKKSRESLVSYYFNVFLLQRRGYQNRHTPDNIDSDDEESEFTPLKGAFGHQTDKSNSITLLSPKKPQPAPHTKGRQLVHGLKS*