AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028290 MtrunA17_Chr7g0248041 97.167 600 17 0 1 600 1 600 0.0 1204
Msa1028290 MtrunA17_Chr8g0387141 34.673 597 292 16 1 578 67 584 8.20e-91 292
Msa1028290 MtrunA17_Chr8g0348691 50.190 263 111 6 323 568 1 260 3.54e-77 245
Msa1028290 MtrunA17_Chr8g0387181 35.572 402 199 9 231 578 221 616 4.40e-68 233
Msa1028290 MtrunA17_Chr8g0387181 57.377 61 26 0 1 61 60 120 2.98e-12 69.7
Msa1028290 MtrunA17_Chr8g0387161 36.615 325 161 5 259 578 1 285 6.67e-65 214
Msa1028290 MtrunA17_Chr1g0186281 47.917 192 100 0 386 577 381 572 2.68e-57 202
Msa1028290 MtrunA17_Chr1g0186281 52.308 65 31 0 1 65 69 133 3.15e-12 69.3
Msa1028290 MtrunA17_Chr1g0186261 46.354 192 103 0 386 577 384 575 2.10e-55 197
Msa1028290 MtrunA17_Chr1g0186261 52.308 65 31 0 1 65 69 133 3.97e-11 65.9
Msa1028290 MtrunA17_Chr1g0186191 33.053 357 197 5 255 577 234 582 1.46e-54 195
Msa1028290 MtrunA17_Chr1g0186191 53.846 65 30 0 1 65 83 147 2.26e-12 69.7
Msa1028290 MtrunA17_Chr8g0348681 36.585 328 176 9 8 318 16 328 3.65e-47 168
Msa1028290 MtrunA17_Chr6g0479271 31.949 313 182 9 183 483 2 295 1.13e-30 122
Msa1028290 MtrunA17_Chr3g0086341 37.037 189 106 4 378 555 140 326 1.86e-30 125
Msa1028290 MtrunA17_Chr7g0241681 37.870 169 92 3 383 540 190 356 2.60e-30 122
Msa1028290 MtrunA17_Chr7g0241661 32.159 227 135 8 324 534 114 337 1.44e-20 93.6
Msa1028290 MtrunA17_Chr5g0420461 37.234 94 40 1 390 483 90 164 1.92e-13 69.3
Msa1028290 MtrunA17_Chr6g0453251 50.000 58 29 0 1 58 67 124 7.65e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028290 AT2G46040.3 42.042 333 151 8 234 555 229 530 3.77e-67 229
Msa1028290 AT2G46040.1 42.042 333 151 8 234 555 229 530 3.77e-67 229
Msa1028290 AT2G46040.2 42.042 333 151 8 234 555 243 544 4.23e-67 229
Msa1028290 AT4G11400.2 39.823 339 175 7 251 566 218 550 2.91e-63 219
Msa1028290 AT4G11400.1 39.823 339 175 7 251 566 218 550 2.91e-63 219
Msa1028290 AT5G04110.2 40.805 174 91 4 387 549 362 534 8.75e-34 136
Msa1028290 AT5G04110.1 40.805 174 91 4 387 549 361 533 1.05e-33 135
Msa1028290 AT5G04110.3 40.805 174 91 4 387 549 361 533 1.05e-33 135
Msa1028290 AT2G03470.2 31.818 286 165 8 286 555 24 295 2.19e-31 127
Msa1028290 AT2G03470.1 31.707 287 165 8 286 555 24 296 2.84e-31 127
Msa1028290 AT1G13880.2 35.000 200 110 5 383 569 134 326 2.34e-26 112
Msa1028290 AT1G13880.1 35.000 200 110 5 383 569 124 316 2.37e-26 112
Msa1028290 AT1G13880.3 35.000 200 110 5 383 569 125 317 2.49e-26 112
Msa1028290 AT1G26580.3 35.204 196 108 4 378 555 60 254 3.40e-26 112
Msa1028290 AT1G26580.2 35.204 196 108 4 378 555 126 320 6.16e-26 112
Msa1028290 AT1G26580.1 35.204 196 108 4 378 555 126 320 6.16e-26 112
Msa1028290 AT5G04110.4 40.690 145 74 4 387 520 361 504 2.87e-25 110

Find 191 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGCTTGATAGATGTTTC+TGG 0.140839 7_1:-60999573 Msa1028290:CDS
GACCCTTTAAATAGGTTATA+TGG 0.167285 7_1:-60998713 Msa1028290:three_prime_UTR
GCTGAAGTTCAAGTTAATTT+TGG 0.187751 7_1:+60998879 None:intergenic
GTCTAAATTCCACTGGTAAA+AGG 0.214752 7_1:+60999675 None:intergenic
CTCCCATATAACCTATTTAA+AGG 0.228094 7_1:+60998710 None:intergenic
ATGATTTGATCTAGGTTTAT+AGG 0.228143 7_1:+61003950 None:intergenic
GGCGTTGGCTGTGGCTTCTT+AGG 0.242383 7_1:+60999343 None:intergenic
CTCTCTTTATTAACACTAGA+TGG 0.242913 7_1:+61002625 None:intergenic
TCCTTCACTCTCAACTTTCT+TGG 0.243171 7_1:+61002843 None:intergenic
TGGGAGGAGTCAATTGTATT+TGG 0.246024 7_1:-60998693 Msa1028290:three_prime_UTR
AAACTTTCCCTGCTCTTCTT+AGG 0.251694 7_1:+60999529 None:intergenic
TTATCTCCATTGCAGCATTT+TGG 0.260815 7_1:+61002758 None:intergenic
AGCTTATCTGAGTTTCTATA+TGG 0.273411 7_1:-60998859 Msa1028290:three_prime_UTR
AATCGTAAAATCCGAACTTT+TGG 0.277183 7_1:-60999821 Msa1028290:CDS
ATTACATTGACCCTTTAAAT+AGG 0.286157 7_1:-60998721 Msa1028290:three_prime_UTR
TTCAAAATCTAGGATCTGTT+TGG 0.288526 7_1:-61004023 Msa1028290:five_prime_UTR
GATCTAGGTTTATAGGTCTA+TGG 0.296352 7_1:+61003957 None:intergenic
GATTTGGTTGGGGAAGAATA+TGG 0.301512 7_1:-61003240 Msa1028290:CDS
AAGAGAGCTTTGGTCGTAAA+AGG 0.302198 7_1:-61002609 Msa1028290:CDS
TTTACTCTAATTCAAAATCT+AGG 0.312892 7_1:-61004033 Msa1028290:five_prime_UTR
AAATGCTGCAATGGAGATAA+TGG 0.314367 7_1:-61002755 Msa1028290:CDS
ATTCGGGCACTTCAGCTTGA+TGG 0.324498 7_1:+60999905 None:intergenic
CACGAATCTTGTGTCTAATA+TGG 0.325526 7_1:-61002866 Msa1028290:CDS
ACACCATTGAAGGGTGCTTT+TGG 0.331159 7_1:-60999406 Msa1028290:CDS
GGCACTTCAGCTTGATGGTT+TGG 0.334418 7_1:+60999910 None:intergenic
GAAACCCTAGAGAAGAGTTT+TGG 0.338589 7_1:-61003462 Msa1028290:five_prime_UTR
GCTAGACTCAAGCTGGAAAT+AGG 0.340184 7_1:-60999703 Msa1028290:CDS
GGAGCGTTTAACGGAGTTGC+AGG 0.344592 7_1:-61003082 Msa1028290:CDS
TGGGCGATAGAGTTAAGTTT+GGG 0.351590 7_1:-61003104 Msa1028290:CDS
GCGTTGGCTGTGGCTTCTTA+GGG 0.354312 7_1:+60999344 None:intergenic
GTGGGCGATAGAGTTAAGTT+TGG 0.357837 7_1:-61003105 Msa1028290:CDS
CTGTTAAGTGTTAAGTTCAT+TGG 0.363043 7_1:-61003396 Msa1028290:five_prime_UTR
ACCCTTTAAATAGGTTATAT+GGG 0.366850 7_1:-60998712 Msa1028290:three_prime_UTR
ATGAGTTGTGGGATTTGGTT+GGG 0.366912 7_1:-61003251 Msa1028290:CDS
AATCCTTGTGATCCTGTGTT+AGG 0.370694 7_1:-61002532 Msa1028290:CDS
TAAGAATGAGTTGTGGGATT+TGG 0.371336 7_1:-61003256 Msa1028290:CDS
GTGAGTTGTGCCAGTCCATT+CGG 0.372553 7_1:+60999888 None:intergenic
TCATCACTGTCAATGTTATC+AGG 0.372585 7_1:+60999445 None:intergenic
TTCGCTTGATAGATGTTTCT+GGG 0.372715 7_1:-60999572 Msa1028290:CDS
AAAAGGTACCAGATGAATTT+CGG 0.376007 7_1:+61003680 None:intergenic
GACATCATCGCCACTTTCAT+TGG 0.385220 7_1:+61002660 None:intergenic
AGTGGCTGGGAACTCAAATA+TGG 0.387174 7_1:-60999852 Msa1028290:CDS
CAATGCCTGAAAAGTCAAAA+TGG 0.398546 7_1:-61002507 Msa1028290:CDS
TGGCTTCTTAGGGGATAATA+AGG 0.401536 7_1:+60999354 None:intergenic
GAGTTGGTGTTGGATGATTA+TGG 0.401674 7_1:-61003057 Msa1028290:CDS
TTCATGCCGTTGCCAGGTAC+AGG 0.406356 7_1:-60999767 Msa1028290:CDS
GAAAGAGATCTAGAAAATGT+TGG 0.406581 7_1:-61003352 Msa1028290:exon
CCTTTGAAGAATGTCGTTGA+TGG 0.409145 7_1:-61003150 Msa1028290:CDS
AGATTTGTATAAGCTGTTCA+TGG 0.410254 7_1:-61003313 Msa1028290:CDS
GTTGGGGAAGAATATGGGTT+GGG 0.412314 7_1:-61003234 Msa1028290:CDS
TAGAGTGAAGGTTGTGAATC+CGG 0.413505 7_1:-61002968 Msa1028290:CDS
TTCTCTCTCCGAAATTCATC+TGG 0.413861 7_1:-61003688 Msa1028290:intron
TATCAGGAGTATGCCTGTTC+TGG 0.414090 7_1:+60999461 None:intergenic
GATGAAGTCAAGAGTGTATA+CGG 0.415499 7_1:-61003018 Msa1028290:CDS
GGGAAGAAGTGAGGCGATGC+TGG 0.415602 7_1:-60999645 Msa1028290:CDS
GGTGCATCAAGAATTGATTC+TGG 0.415723 7_1:+60999958 None:intergenic
AGGTTCCCCTTCCAAAAGTT+CGG 0.417302 7_1:+60999810 None:intergenic
ATTTGGTTGGGGAAGAATAT+GGG 0.421040 7_1:-61003239 Msa1028290:CDS
AACGGATCAAACGTGACAAT+GGG 0.422576 7_1:-61000062 Msa1028290:CDS
TCAAAATCTAGGATCTGTTT+GGG 0.422914 7_1:-61004022 Msa1028290:five_prime_UTR
GATTATGGTGAGGGAGATGT+CGG 0.423212 7_1:-61003042 Msa1028290:CDS
TGAGTTGTGCCAGTCCATTC+GGG 0.426236 7_1:+60999889 None:intergenic
CAAGAGTGATTCTAAGTGGC+TGG 0.427819 7_1:-60999866 Msa1028290:CDS
CGATGTCAGAAATGCAAAGT+TGG 0.431021 7_1:-61002573 Msa1028290:CDS
TCCCATATAACCTATTTAAA+GGG 0.432234 7_1:+60998711 None:intergenic
GGGTGTGAAAGTTGGTTCTT+CGG 0.433272 7_1:-61003214 Msa1028290:CDS
CATCTCCAAAACTCTTCTCT+AGG 0.433495 7_1:+61003457 None:intergenic
AAAGAGATCTAGAAAATGTT+GGG 0.435560 7_1:-61003351 Msa1028290:exon
AAGGTATATGAGTACATTGA+TGG 0.435788 7_1:-61002922 Msa1028290:CDS
TAAGTTTGGGGAGCGTTTAA+CGG 0.437682 7_1:-61003091 Msa1028290:CDS
ACAATGAAGCTCATGATTTG+AGG 0.438613 7_1:+60999290 None:intergenic
AACGGAGTTGCAGGCGGAGT+TGG 0.440717 7_1:-61003073 Msa1028290:CDS
AAACATCTATCAAGCGAAGC+AGG 0.442525 7_1:+60999577 None:intergenic
CTGGTGAAAATGTGTAACTA+AGG 0.443250 7_1:+60998988 None:intergenic
ATTATGGTGAGGGAGATGTC+GGG 0.443986 7_1:-61003041 Msa1028290:CDS
ATCGGAATTTACACCATTGA+AGG 0.444707 7_1:-60999416 Msa1028290:CDS
GTTCCCGAAGCGTGATTTAG+TGG 0.446072 7_1:-61003124 Msa1028290:CDS
GACAGGGTTGTTGTGGAGCT+TGG 0.454931 7_1:-61003486 Msa1028290:intron
CAACATTTCCTAAGAAGAGC+AGG 0.455515 7_1:-60999537 Msa1028290:CDS
AGTGTTAATAAAGAGAGCTT+TGG 0.458202 7_1:-61002619 Msa1028290:CDS
TTAAGTGTTAAGTTCATTGG+TGG 0.469351 7_1:-61003393 Msa1028290:five_prime_UTR
CGCCCACTAAATCACGCTTC+GGG 0.472395 7_1:+61003121 None:intergenic
GATGTAGCAAACAGCATGCC+TGG 0.473778 7_1:-61002721 Msa1028290:CDS
TTTGTATGTGGCGTTGGCTG+TGG 0.473835 7_1:+60999334 None:intergenic
TCGCCCACTAAATCACGCTT+CGG 0.475900 7_1:+61003120 None:intergenic
CCCAAGGTTATCATCATACA+TGG 0.476856 7_1:+61000104 None:intergenic
ATCTCCAAAACTCTTCTCTA+GGG 0.478353 7_1:+61003458 None:intergenic
ACAAGATTCATGCCGTTGCC+AGG 0.482217 7_1:-60999773 Msa1028290:CDS
ACTGTTAAAACAACTGCGTC+AGG 0.482273 7_1:-60998945 Msa1028290:three_prime_UTR
TGACAGTGATGATGAAGAAT+CGG 0.482629 7_1:-60999434 Msa1028290:CDS
CTTACGGTAATCATGAGATC+TGG 0.482890 7_1:-61002480 Msa1028290:CDS
GAGGTAAAAGATGCTGCCTT+TGG 0.483071 7_1:-60999129 Msa1028290:three_prime_UTR
TCTTGTCTTCCCTTTCCGAC+AGG 0.485818 7_1:+60999790 None:intergenic
CAGCCAACGCCACATACAAA+AGG 0.491192 7_1:-60999331 Msa1028290:CDS
AATGAGTTGTGGGATTTGGT+TGG 0.494085 7_1:-61003252 Msa1028290:CDS
ACTAGTTGACGTGCTTATGC+AGG 0.495122 7_1:-61002821 Msa1028290:CDS
CAGTGGAATTTAGACAAAGC+AGG 0.497895 7_1:-60999667 Msa1028290:CDS
TGCCAGTTGGCATATAGAAA+AGG 0.499279 7_1:+60998775 None:intergenic
GCTGAAGTGCCCGAATGGAC+TGG 0.499421 7_1:-60999898 Msa1028290:CDS
AAGTCAAAATGGAAGTCTTA+CGG 0.503873 7_1:-61002496 Msa1028290:CDS
TCAAGAGTGTATACGGATGT+AGG 0.504450 7_1:-61003011 Msa1028290:CDS
AGCGCAGAGGATACCAGAAC+AGG 0.504565 7_1:-60999474 Msa1028290:CDS
TATGGGTTGGGTGTGAAAGT+TGG 0.508099 7_1:-61003222 Msa1028290:CDS
CCATGTATGATGATAACCTT+GGG 0.511627 7_1:-61000104 Msa1028290:CDS
GATATAGAAGAGAGAGAGTG+AGG 0.512000 7_1:+61003758 None:intergenic
AGTTCAGTCGCATTCAACTC+CGG 0.513469 7_1:+61002949 None:intergenic
CTGCTTTGTCTAAATTCCAC+TGG 0.513826 7_1:+60999668 None:intergenic
TTGTTTCTATGTCAGATGAT+TGG 0.514839 7_1:+61003804 None:intergenic
TAAGATTGTAATTTGTCCCA+AGG 0.519599 7_1:+61000088 None:intergenic
TCTCTTTATTAACACTAGAT+GGG 0.523442 7_1:+61002626 None:intergenic
AAAGATGCTGCCTTTGGTGG+TGG 0.523947 7_1:-60999123 Msa1028290:three_prime_UTR
GAAAAGCGCTAGACTCAAGC+TGG 0.525180 7_1:-60999710 Msa1028290:CDS
TTGGTGTAGGGTCGGCTATG+AGG 0.525626 7_1:-60999148 Msa1028290:intron
CCCACAGTGAATATCCCTCT+CGG 0.526822 7_1:-60999934 Msa1028290:CDS
TGTCCAAAAGCACCCTTCAA+TGG 0.528458 7_1:+60999403 None:intergenic
GATGTCAGAAATGCAAAGTT+GGG 0.528739 7_1:-61002572 Msa1028290:CDS
GTCTGGCACTAATAAAATGA+AGG 0.533480 7_1:-61002890 Msa1028290:CDS
AGGCATGCTGTTTGCTACAT+CGG 0.534517 7_1:+61002723 None:intergenic
GTTGCAGGCGGAGTTGGTGT+TGG 0.535127 7_1:-61003067 Msa1028290:CDS
GAAGGGGAACCTGTCGGAAA+GGG 0.537473 7_1:-60999799 Msa1028290:CDS
AAGAATTGATTCTGGAACAC+AGG 0.538056 7_1:+60999966 None:intergenic
TGAGTTGTGGGATTTGGTTG+GGG 0.538551 7_1:-61003250 Msa1028290:CDS
AACACCTGATTCCGAAGCTA+AGG 0.538928 7_1:-61000004 Msa1028290:CDS
TTGCTTCCATCTGACAATCC+AGG 0.540122 7_1:+61002703 None:intergenic
TGAGACTAGTCTCAGAAAGT+TGG 0.541534 7_1:-61002785 Msa1028290:CDS
GAATGCGACTGAACTCGAAA+AGG 0.545834 7_1:-61002941 Msa1028290:CDS
ACTCGACAGAACCCTGTACC+TGG 0.548252 7_1:+60999755 None:intergenic
ATCAAGCTGAAGTGCCCGAA+TGG 0.549788 7_1:-60999903 Msa1028290:CDS
TGTTTGTAAGAATGAGTTGT+GGG 0.550138 7_1:-61003262 Msa1028290:CDS
CCACAGTGAATATCCCTCTC+GGG 0.550265 7_1:-60999933 Msa1028290:CDS
GTAAAAGATGCTGCCTTTGG+TGG 0.551743 7_1:-60999126 Msa1028290:three_prime_UTR
CAACGGATCAAACGTGACAA+TGG 0.554887 7_1:-61000063 Msa1028290:CDS
GGAAGGGGAACCTGTCGGAA+AGG 0.556040 7_1:-60999800 Msa1028290:CDS
ATTGATGGGAGGAAGATGTC+TGG 0.558695 7_1:-61002907 Msa1028290:CDS
CGTTGGCTGTGGCTTCTTAG+GGG 0.558699 7_1:+60999345 None:intergenic
CTTGATGGTTTGGCCCGAGA+GGG 0.566622 7_1:+60999920 None:intergenic
CTCACAAGAGTGATTCTAAG+TGG 0.569925 7_1:-60999870 Msa1028290:CDS
AATGATGACGCCAATGAAAG+TGG 0.572125 7_1:-61002670 Msa1028290:CDS
AAGTAATTATACTTTCTACA+TGG 0.572424 7_1:-60998753 Msa1028290:three_prime_UTR
TCCATGTATGATGATAACCT+TGG 0.573234 7_1:-61000105 Msa1028290:CDS
TAATCATGAGATCTGGAAGA+AGG 0.575062 7_1:-61002473 Msa1028290:CDS
AGGTATATGAGTACATTGAT+GGG 0.575431 7_1:-61002921 Msa1028290:CDS
TATGCATGACAGGGTTGTTG+TGG 0.578009 7_1:-61003493 Msa1028290:intron
TCATGCCGTTGCCAGGTACA+GGG 0.583742 7_1:-60999766 Msa1028290:CDS
CCATCAACGACATTCTTCAA+AGG 0.584134 7_1:+61003150 None:intergenic
TTCCCGAAGCGTGATTTAGT+GGG 0.584624 7_1:-61003123 Msa1028290:CDS
TTAGCTGCTTCCACCACCAA+AGG 0.585474 7_1:+60999113 None:intergenic
AGTGGAATTTAGACAAAGCA+GGG 0.585551 7_1:-60999666 Msa1028290:CDS
TGTGTAACTAAGGGAATATG+TGG 0.585597 7_1:+60998998 None:intergenic
AAGAGTGATTCTAAGTGGCT+GGG 0.587117 7_1:-60999865 Msa1028290:CDS
TGGTGAAAATGTGTAACTAA+GGG 0.589077 7_1:+60998989 None:intergenic
TGGCGATGATGTCTTGATGT+TGG 0.595435 7_1:-61002650 Msa1028290:CDS
GGTTGGGGAAGAATATGGGT+TGG 0.595753 7_1:-61003235 Msa1028290:CDS
GTGTTGGATGATTATGGTGA+GGG 0.596430 7_1:-61003051 Msa1028290:CDS
AGCATGCCTGGATTGTCAGA+TGG 0.597266 7_1:-61002709 Msa1028290:CDS
CAAATTACAATCTTAGACAA+CGG 0.597787 7_1:-61000080 Msa1028290:CDS
AACATCTATCAAGCGAAGCA+GGG 0.599897 7_1:+60999578 None:intergenic
GGTTAACCAAAATGCTGCAA+TGG 0.603733 7_1:-61002764 Msa1028290:CDS
TAAGCTGTTCATGGTGGTGA+AGG 0.604654 7_1:-61003304 Msa1028290:CDS
GCGTTTAACGGAGTTGCAGG+CGG 0.610457 7_1:-61003079 Msa1028290:CDS
TCGGAATTTACACCATTGAA+GGG 0.611362 7_1:-60999415 Msa1028290:CDS
GCCAAGAAAGTTGAGAGTGA+AGG 0.613248 7_1:-61002844 Msa1028290:CDS
ATGCAACCCTTGTCACAACC+TGG 0.617563 7_1:+60998969 None:intergenic
ACAAAGCAGGGGAAGAAGTG+AGG 0.617748 7_1:-60999654 Msa1028290:CDS
AAGTATAATTACTTGCCAGT+TGG 0.617938 7_1:+60998762 None:intergenic
AGGTTATCATCATACATGGA+AGG 0.619750 7_1:+61000108 None:intergenic
GCTTGATGGTTTGGCCCGAG+AGG 0.620538 7_1:+60999919 None:intergenic
TCAGGCATTGAACCTAACAC+AGG 0.622398 7_1:+61002520 None:intergenic
AAAGGAAGACAGCTAGTGCA+TGG 0.624413 7_1:-60999313 Msa1028290:CDS
AACATTTCCTAAGAAGAGCA+GGG 0.628463 7_1:-60999536 Msa1028290:CDS
TTGTTTGTAAGAATGAGTTG+TGG 0.633971 7_1:-61003263 Msa1028290:CDS
CAGAACCCTGTACCTGGCAA+CGG 0.636700 7_1:+60999761 None:intergenic
GAACCTAACACAGGATCACA+AGG 0.636857 7_1:+61002529 None:intergenic
CTGACATAGAAACAATGCGC+GGG 0.643470 7_1:-61003796 Msa1028290:five_prime_UTR
CCGAGAGGGATATTCACTGT+GGG 0.648373 7_1:+60999934 None:intergenic
AGAGGGATATTCACTGTGGG+AGG 0.651849 7_1:+60999937 None:intergenic
TTATGGTGAGGGAGATGTCG+GGG 0.658460 7_1:-61003040 Msa1028290:CDS
TTCATGGTGGTGAAGGACAA+AGG 0.665997 7_1:-61003297 Msa1028290:CDS
TATATGAGTACATTGATGGG+AGG 0.668237 7_1:-61002918 Msa1028290:CDS
CTTTAAATAGGTTATATGGG+AGG 0.669244 7_1:-60998709 Msa1028290:three_prime_UTR
ACTCAAGCTGGAAATAGGTG+TGG 0.680587 7_1:-60999698 Msa1028290:CDS
GTGTGATACTAATAGAGTGA+AGG 0.682936 7_1:-61002980 Msa1028290:CDS
GGTGTTGGATGATTATGGTG+AGG 0.685208 7_1:-61003052 Msa1028290:CDS
CCCGAGAGGGATATTCACTG+TGG 0.699432 7_1:+60999933 None:intergenic
ACGGATCAAACGTGACAATG+GGG 0.705546 7_1:-61000061 Msa1028290:CDS
GTTTATAGTAAGTATCTGAG+TGG 0.710441 7_1:-61003183 Msa1028290:CDS
GGGCGATAGAGTTAAGTTTG+GGG 0.715012 7_1:-61003103 Msa1028290:CDS
GTGGAATTTAGACAAAGCAG+GGG 0.723671 7_1:-60999665 Msa1028290:CDS
TTTGTATAAGCTGTTCATGG+TGG 0.747724 7_1:-61003310 Msa1028290:CDS
ATGGTGGTGAAGGACAAAGG+TGG 0.772486 7_1:-61003294 Msa1028290:CDS
TCTGACATAGAAACAATGCG+CGG 0.777334 7_1:-61003797 Msa1028290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATCTTTTATTTATTTA+TGG - chr7_1:61000570-61000589 Msa1028290:intron 10.0%
!! TATTAATTAGATCATACAAT+AGG + chr7_1:61000725-61000744 None:intergenic 15.0%
!!! TTTTTTTATAACCATGTTAT+AGG + chr7_1:61000996-61001015 None:intergenic 15.0%
!! GTTATGAAAAAATGTTAATT+TGG - chr7_1:61001034-61001053 Msa1028290:intron 15.0%
!! ATATTATGAATGAAATAAAG+AGG + chr7_1:61001072-61001091 None:intergenic 15.0%
!! TAAAATTTGAATTCTCTATT+TGG - chr7_1:61001232-61001251 Msa1028290:intron 15.0%
!!! TTTTGTTTATAAAAGACATT+TGG + chr7_1:61001700-61001719 None:intergenic 15.0%
!!! TATCAATGAAGTATTTAATT+TGG + chr7_1:61001848-61001867 None:intergenic 15.0%
!!! AAATTCAAAATTTTGAATTG+TGG + chr7_1:61001898-61001917 None:intergenic 15.0%
!!! AACTTTTATTGATTTTTTTC+TGG + chr7_1:61002126-61002145 None:intergenic 15.0%
!! TTTACTCTAATTCAAAATCT+AGG - chr7_1:60998672-60998691 Msa1028290:three_prime_UTR 20.0%
!! AAGAAAAAATGATTTGATCT+AGG + chr7_1:60998766-60998785 None:intergenic 20.0%
!! TATTCTTCAAAAATCTAAGA+GGG + chr7_1:60998823-60998842 None:intergenic 20.0%
!!! TCTTAGATTTTTGAAGAATA+GGG - chr7_1:60998823-60998842 Msa1028290:three_prime_UTR 20.0%
!!! TTTTTGATGAAAAAAATGGA+GGG + chr7_1:60998879-60998898 None:intergenic 20.0%
!!! TGATGTTTGAAATATAATGT+AGG - chr7_1:61000366-61000385 Msa1028290:intron 20.0%
!!! GATGTTTGAAATATAATGTA+GGG - chr7_1:61000367-61000386 Msa1028290:intron 20.0%
!! ATTATAATGCTAATGACAAA+AGG + chr7_1:61000461-61000480 None:intergenic 20.0%
!! AAAATTACAGGATTAAGTTA+TGG + chr7_1:61000603-61000622 None:intergenic 20.0%
!! ATATTACATTGAAGATTGAA+CGG + chr7_1:61000688-61000707 None:intergenic 20.0%
!! GAAAAAATCAATACTTGATA+AGG - chr7_1:61000796-61000815 Msa1028290:intron 20.0%
!! AAAGAGAATAAACAATACTA+AGG + chr7_1:61001097-61001116 None:intergenic 20.0%
!! AATTTATAGTGCTTATTATG+TGG + chr7_1:61001199-61001218 None:intergenic 20.0%
!! AAAAAGTTTCATATTACTTG+GGG + chr7_1:61001385-61001404 None:intergenic 20.0%
!! CAAAAAGTTTCATATTACTT+GGG + chr7_1:61001386-61001405 None:intergenic 20.0%
!! ATAAGACAGTAACATAAATT+TGG + chr7_1:61002295-61002314 None:intergenic 20.0%
!!! AACAATTTTTCTGTATCAAA+TGG - chr7_1:61003473-61003492 Msa1028290:five_prime_UTR 20.0%
!!! ATGATTTTATATTCTATGCA+AGG + chr7_1:61003507-61003526 None:intergenic 20.0%
!!! TAAAATCATCATTGCTATTA+AGG - chr7_1:61003518-61003537 Msa1028290:intron 20.0%
!!! TACAATGTGGAAATTATTTT+AGG - chr7_1:61003880-61003899 Msa1028290:five_prime_UTR 20.0%
!! AAGTAATTATACTTTCTACA+TGG - chr7_1:61003952-61003971 Msa1028290:five_prime_UTR 20.0%
! ATGATTTGATCTAGGTTTAT+AGG + chr7_1:60998758-60998777 None:intergenic 25.0%
! CTATTCTTCAAAAATCTAAG+AGG + chr7_1:60998824-60998843 None:intergenic 25.0%
!!! CTCTTAGATTTTTGAAGAAT+AGG - chr7_1:60998822-60998841 Msa1028290:three_prime_UTR 25.0%
!! TTTTGATGAAAAAAATGGAG+GGG + chr7_1:60998878-60998897 None:intergenic 25.0%
!! GTTTTTGATGAAAAAAATGG+AGG + chr7_1:60998880-60998899 None:intergenic 25.0%
!!! GGTGTTTTTGATGAAAAAAA+TGG + chr7_1:60998883-60998902 None:intergenic 25.0%
! GAAAACAAAAAAGCAAAACT+GGG + chr7_1:60999079-60999098 None:intergenic 25.0%
! TGAAAACAAAAAAGCAAAAC+TGG + chr7_1:60999080-60999099 None:intergenic 25.0%
!!! AAAATTGAAACTTTCTAGCT+TGG - chr7_1:60999147-60999166 Msa1028290:intron 25.0%
! AAAGAGATCTAGAAAATGTT+GGG - chr7_1:60999354-60999373 Msa1028290:CDS 25.0%
! TCTCTTTATTAACACTAGAT+GGG + chr7_1:61000082-61000101 None:intergenic 25.0%
!!! TCCAAAATCTTTTTTCAGAA+AGG + chr7_1:61000279-61000298 None:intergenic 25.0%
!!! TTTGTTTTTACCTTGTTGAA+TGG - chr7_1:61000533-61000552 Msa1028290:intron 25.0%
!!! GGCATATTATTTTTGCAAAT+GGG + chr7_1:61000651-61000670 None:intergenic 25.0%
! ATAAAGGATAAAACTGCAAA+TGG + chr7_1:61001314-61001333 None:intergenic 25.0%
!!! GCAGTTTTATCCTTTATAAA+AGG - chr7_1:61001317-61001336 Msa1028290:intron 25.0%
!!! TAATGAAGTGCCTTTTATAA+AGG + chr7_1:61001330-61001349 None:intergenic 25.0%
! CCAAAAAGTTTCATATTACT+TGG + chr7_1:61001387-61001406 None:intergenic 25.0%
!! CCAAGTAATATGAAACTTTT+TGG - chr7_1:61001384-61001403 Msa1028290:intron 25.0%
!!! CTTTTGCTGATTTATTTTTG+AGG - chr7_1:61001947-61001966 Msa1028290:intron 25.0%
! AATTATTCTGTCTATCACAT+TGG - chr7_1:61002059-61002078 Msa1028290:intron 25.0%
!! TTATGTTACTGTCTTATTGA+AGG - chr7_1:61002298-61002317 Msa1028290:intron 25.0%
!! TGAAGAAATTTCTCTGTTTT+TGG - chr7_1:61002447-61002466 Msa1028290:CDS 25.0%
!!! AACTTTCTTCTACCATTTTT+AGG - chr7_1:61002560-61002579 Msa1028290:CDS 25.0%
! CAAATTACAATCTTAGACAA+CGG - chr7_1:61002625-61002644 Msa1028290:CDS 25.0%
!! AGGACTAATAAAGATTGTTT+TGG - chr7_1:61003538-61003557 Msa1028290:intron 25.0%
!!! AATAAAGATTGTTTTGGTGT+AGG - chr7_1:61003544-61003563 Msa1028290:intron 25.0%
!!! ATAAAGATTGTTTTGGTGTA+GGG - chr7_1:61003545-61003564 Msa1028290:intron 25.0%
!! CACAACAATTTTATTGTAGA+TGG - chr7_1:61003787-61003806 Msa1028290:five_prime_UTR 25.0%
! ATTACATTGACCCTTTAAAT+AGG - chr7_1:61003984-61004003 Msa1028290:five_prime_UTR 25.0%
! ACCCTTTAAATAGGTTATAT+GGG - chr7_1:61003993-61004012 Msa1028290:five_prime_UTR 25.0%
! TCCCATATAACCTATTTAAA+GGG + chr7_1:61003997-61004016 None:intergenic 25.0%
! TTCAAAATCTAGGATCTGTT+TGG - chr7_1:60998682-60998701 Msa1028290:three_prime_UTR 30.0%
! TCAAAATCTAGGATCTGTTT+GGG - chr7_1:60998683-60998702 Msa1028290:three_prime_UTR 30.0%
!! TTGTTTCTATGTCAGATGAT+TGG + chr7_1:60998904-60998923 None:intergenic 30.0%
! AGAGAGTGAGGAAAATTTTT+GGG + chr7_1:60998938-60998957 None:intergenic 30.0%
!! AAAAGGTACCAGATGAATTT+CGG + chr7_1:60999028-60999047 None:intergenic 30.0%
TTAGCGTAAGAAATGTGAAA+AGG + chr7_1:60999045-60999064 None:intergenic 30.0%
!! TTGTTTTCAGCTTTTTTTCG+TGG - chr7_1:60999091-60999110 Msa1028290:three_prime_UTR 30.0%
!! TGTTTTCAGCTTTTTTTCGT+GGG - chr7_1:60999092-60999111 Msa1028290:three_prime_UTR 30.0%
!!! TTTTGTTAGTTTTTGGGATG+CGG - chr7_1:60999115-60999134 Msa1028290:three_prime_UTR 30.0%
!! ATGTTTTTGATATGCATGAC+AGG - chr7_1:60999202-60999221 Msa1028290:intron 30.0%
!! TGTTTTTGATATGCATGACA+GGG - chr7_1:60999203-60999222 Msa1028290:intron 30.0%
CTGTTAAGTGTTAAGTTCAT+TGG - chr7_1:60999309-60999328 Msa1028290:CDS 30.0%
TTAAGTGTTAAGTTCATTGG+TGG - chr7_1:60999312-60999331 Msa1028290:CDS 30.0%
GAAAGAGATCTAGAAAATGT+TGG - chr7_1:60999353-60999372 Msa1028290:CDS 30.0%
AGATTTGTATAAGCTGTTCA+TGG - chr7_1:60999392-60999411 Msa1028290:CDS 30.0%
TTGTTTGTAAGAATGAGTTG+TGG - chr7_1:60999442-60999461 Msa1028290:CDS 30.0%
TGTTTGTAAGAATGAGTTGT+GGG - chr7_1:60999443-60999462 Msa1028290:CDS 30.0%
GTTTATAGTAAGTATCTGAG+TGG - chr7_1:60999522-60999541 Msa1028290:CDS 30.0%
AAGGTATATGAGTACATTGA+TGG - chr7_1:60999783-60999802 Msa1028290:CDS 30.0%
AGGTATATGAGTACATTGAT+GGG - chr7_1:60999784-60999803 Msa1028290:CDS 30.0%
CTCTCTTTATTAACACTAGA+TGG + chr7_1:61000083-61000102 None:intergenic 30.0%
AGTGTTAATAAAGAGAGCTT+TGG - chr7_1:61000086-61000105 Msa1028290:CDS 30.0%
AAGTCAAAATGGAAGTCTTA+CGG - chr7_1:61000209-61000228 Msa1028290:intron 30.0%
!! GCCTTTCTGAAAAAAGATTT+TGG - chr7_1:61000275-61000294 Msa1028290:intron 30.0%
! TTGCCAATGTTATTTGATGT+TGG - chr7_1:61000434-61000453 Msa1028290:intron 30.0%
!!! GGGCATATTATTTTTGCAAA+TGG + chr7_1:61000652-61000671 None:intergenic 30.0%
! TTGAACGGTACATCTATTTT+GGG + chr7_1:61000673-61000692 None:intergenic 30.0%
! ATTGAACGGTACATCTATTT+TGG + chr7_1:61000674-61000693 None:intergenic 30.0%
ATGCATAATACATGTTGAGT+TGG + chr7_1:61000763-61000782 None:intergenic 30.0%
ATTGATAGAACTACGTACAT+GGG - chr7_1:61000822-61000841 Msa1028290:intron 30.0%
AAAATACATACGTGATGCAA+TGG - chr7_1:61001012-61001031 Msa1028290:intron 30.0%
TTATGTGGCACAAAAACTTA+TGG + chr7_1:61001184-61001203 None:intergenic 30.0%
TTTGAATTTATCACATTCGC+AGG - chr7_1:61001909-61001928 Msa1028290:intron 30.0%
! AAAAGTTTGCCTCATACTTT+TGG - chr7_1:61002139-61002158 Msa1028290:intron 30.0%
! TATAGAAGACCAAAAGTATG+AGG + chr7_1:61002151-61002170 None:intergenic 30.0%
TCAAGGTAACATCAGAAAAA+GGG + chr7_1:61002350-61002369 None:intergenic 30.0%
TTCAAGGTAACATCAGAAAA+AGG + chr7_1:61002351-61002370 None:intergenic 30.0%
! TAAGATTGTAATTTGTCCCA+AGG + chr7_1:61002620-61002639 None:intergenic 30.0%
! AATCGTAAAATCCGAACTTT+TGG - chr7_1:61002884-61002903 Msa1028290:CDS 30.0%
!! TAAAATCCGAACTTTTGGAA+GGG - chr7_1:61002889-61002908 Msa1028290:CDS 30.0%
TGGTGAAAATGTGTAACTAA+GGG + chr7_1:61003719-61003738 None:intergenic 30.0%
!! GCTGAAGTTCAAGTTAATTT+TGG + chr7_1:61003829-61003848 None:intergenic 30.0%
AGCTTATCTGAGTTTCTATA+TGG - chr7_1:61003846-61003865 Msa1028290:five_prime_UTR 30.0%
!! GGATGTTTTTCAATACAATG+TGG - chr7_1:61003867-61003886 Msa1028290:five_prime_UTR 30.0%
AAGTATAATTACTTGCCAGT+TGG + chr7_1:61003946-61003965 None:intergenic 30.0%
GACCCTTTAAATAGGTTATA+TGG - chr7_1:61003992-61004011 Msa1028290:five_prime_UTR 30.0%
CTCCCATATAACCTATTTAA+AGG + chr7_1:61003998-61004017 None:intergenic 30.0%
CTTTAAATAGGTTATATGGG+AGG - chr7_1:61003996-61004015 Msa1028290:five_prime_UTR 30.0%
GATCTAGGTTTATAGGTCTA+TGG + chr7_1:60998751-60998770 None:intergenic 35.0%
! GAGAGAGTGAGGAAAATTTT+TGG + chr7_1:60998939-60998958 None:intergenic 35.0%
!!! TCGTGGGTTTTGTTAGTTTT+TGG - chr7_1:60999108-60999127 Msa1028290:three_prime_UTR 35.0%
!!! CGTGGGTTTTGTTAGTTTTT+GGG - chr7_1:60999109-60999128 Msa1028290:three_prime_UTR 35.0%
!!! TTTGTTAGTTTTTGGGATGC+GGG - chr7_1:60999116-60999135 Msa1028290:three_prime_UTR 35.0%
ATCTCCAAAACTCTTCTCTA+GGG + chr7_1:60999250-60999269 None:intergenic 35.0%
!!! AAGAGTTTTGGAGATGAAGA+TGG - chr7_1:60999255-60999274 Msa1028290:intron 35.0%
TTTGTATAAGCTGTTCATGG+TGG - chr7_1:60999395-60999414 Msa1028290:CDS 35.0%
TAAGAATGAGTTGTGGGATT+TGG - chr7_1:60999449-60999468 Msa1028290:CDS 35.0%
ATTTGGTTGGGGAAGAATAT+GGG - chr7_1:60999466-60999485 Msa1028290:CDS 35.0%
! GATGAAGTCAAGAGTGTATA+CGG - chr7_1:60999687-60999706 Msa1028290:CDS 35.0%
GTGTGATACTAATAGAGTGA+AGG - chr7_1:60999725-60999744 Msa1028290:CDS 35.0%
TATATGAGTACATTGATGGG+AGG - chr7_1:60999787-60999806 Msa1028290:CDS 35.0%
GTCTGGCACTAATAAAATGA+AGG - chr7_1:60999815-60999834 Msa1028290:CDS 35.0%
CACGAATCTTGTGTCTAATA+TGG - chr7_1:60999839-60999858 Msa1028290:CDS 35.0%
! TTATCTCCATTGCAGCATTT+TGG + chr7_1:60999950-60999969 None:intergenic 35.0%
AAATGCTGCAATGGAGATAA+TGG - chr7_1:60999950-60999969 Msa1028290:CDS 35.0%
GATGTCAGAAATGCAAAGTT+GGG - chr7_1:61000133-61000152 Msa1028290:intron 35.0%
CAATGCCTGAAAAGTCAAAA+TGG - chr7_1:61000198-61000217 Msa1028290:intron 35.0%
!!! GACTTCCATTTTGACTTTTC+AGG + chr7_1:61000206-61000225 None:intergenic 35.0%
TAATCATGAGATCTGGAAGA+AGG - chr7_1:61000232-61000251 Msa1028290:intron 35.0%
! GCAATATTTTCCATGATGCA+TGG + chr7_1:61000418-61000437 None:intergenic 35.0%
GGACCAACATCAAATAACAT+TGG + chr7_1:61000440-61000459 None:intergenic 35.0%
AAACACAACATCCATGACTA+CGG + chr7_1:61000505-61000524 None:intergenic 35.0%
TACCTTGTTGAATGGTTGTT+AGG - chr7_1:61000541-61000560 Msa1028290:intron 35.0%
ACCTTGTTGAATGGTTGTTA+GGG - chr7_1:61000542-61000561 Msa1028290:intron 35.0%
GATGGAGAGAGTAAAATTAC+AGG + chr7_1:61000615-61000634 None:intergenic 35.0%
! TGAACGGTACATCTATTTTG+GGG + chr7_1:61000672-61000691 None:intergenic 35.0%
GATTGATAGAACTACGTACA+TGG - chr7_1:61000821-61000840 Msa1028290:intron 35.0%
TTGATAGAACTACGTACATG+GGG - chr7_1:61000823-61000842 Msa1028290:intron 35.0%
GATACTTCGTACCTATAACA+TGG - chr7_1:61000982-61001001 Msa1028290:intron 35.0%
AAAGCAGACAATACCTCATA+AGG + chr7_1:61001282-61001301 None:intergenic 35.0%
!! TTATGAGGTATTGTCTGCTT+TGG - chr7_1:61001281-61001300 Msa1028290:intron 35.0%
!! TATGAGGTATTGTCTGCTTT+GGG - chr7_1:61001282-61001301 Msa1028290:intron 35.0%
!! TATGAAACTTTTTGGTGTGC+CGG - chr7_1:61001392-61001411 Msa1028290:intron 35.0%
!! TACACACACATTCAAGTTGA+GGG + chr7_1:61002187-61002206 None:intergenic 35.0%
!! ATACACACACATTCAAGTTG+AGG + chr7_1:61002188-61002207 None:intergenic 35.0%
ACAATTGCATTTCATGTGAC+AGG - chr7_1:61002259-61002278 Msa1028290:intron 35.0%
ATGTTACCTTGAAACAACAG+AGG - chr7_1:61002358-61002377 Msa1028290:intron 35.0%
TGTTACCTTGAAACAACAGA+GGG - chr7_1:61002359-61002378 Msa1028290:intron 35.0%
!!! TCTCTGTTTTTGGATGATAG+AGG - chr7_1:61002457-61002476 Msa1028290:CDS 35.0%
TTTGTCTAAATATTGCCACC+TGG - chr7_1:61002516-61002535 Msa1028290:CDS 35.0%
ACTCTTGATTCAATGATACC+AGG + chr7_1:61002537-61002556 None:intergenic 35.0%
AGGTTATCATCATACATGGA+AGG + chr7_1:61002600-61002619 None:intergenic 35.0%
TCCATGTATGATGATAACCT+TGG - chr7_1:61002600-61002619 Msa1028290:CDS 35.0%
CCATGTATGATGATAACCTT+GGG - chr7_1:61002601-61002620 Msa1028290:CDS 35.0%
! GAGTAACTTTTCCTTAGCTT+CGG + chr7_1:61002715-61002734 None:intergenic 35.0%
!! AAGAATTGATTCTGGAACAC+AGG + chr7_1:61002742-61002761 None:intergenic 35.0%
! GTAAAATCCGAACTTTTGGA+AGG - chr7_1:61002888-61002907 Msa1028290:CDS 35.0%
!! AAAATCCGAACTTTTGGAAG+GGG - chr7_1:61002890-61002909 Msa1028290:CDS 35.0%
GTCTAAATTCCACTGGTAAA+AGG + chr7_1:61003033-61003052 None:intergenic 35.0%
AGTGGAATTTAGACAAAGCA+GGG - chr7_1:61003039-61003058 Msa1028290:CDS 35.0%
TTCGCTTGATAGATGTTTCT+GGG - chr7_1:61003133-61003152 Msa1028290:CDS 35.0%
AACATTTCCTAAGAAGAGCA+GGG - chr7_1:61003169-61003188 Msa1028290:CDS 35.0%
TCATCACTGTCAATGTTATC+AGG + chr7_1:61003263-61003282 None:intergenic 35.0%
! TGACAGTGATGATGAAGAAT+CGG - chr7_1:61003271-61003290 Msa1028290:CDS 35.0%
ATCGGAATTTACACCATTGA+AGG - chr7_1:61003289-61003308 Msa1028290:CDS 35.0%
TCGGAATTTACACCATTGAA+GGG - chr7_1:61003290-61003309 Msa1028290:CDS 35.0%
ACAATGAAGCTCATGATTTG+AGG + chr7_1:61003418-61003437 None:intergenic 35.0%
TGTGTAACTAAGGGAATATG+TGG + chr7_1:61003710-61003729 None:intergenic 35.0%
CTGGTGAAAATGTGTAACTA+AGG + chr7_1:61003720-61003739 None:intergenic 35.0%
! CTTAGTTACACATTTTCACC+AGG - chr7_1:61003718-61003737 Msa1028290:five_prime_UTR 35.0%
!!! GTGGAAATTATTTTAGGCTC+AGG - chr7_1:61003886-61003905 Msa1028290:five_prime_UTR 35.0%
! TACCTTTTCTATATGCCAAC+TGG - chr7_1:61003928-61003947 Msa1028290:five_prime_UTR 35.0%
TCTGACATAGAAACAATGCG+CGG - chr7_1:60998908-60998927 Msa1028290:three_prime_UTR 40.0%
GATATAGAAGAGAGAGAGTG+AGG + chr7_1:60998950-60998969 None:intergenic 40.0%
TTCTCTCTCCGAAATTCATC+TGG - chr7_1:60999017-60999036 Msa1028290:three_prime_UTR 40.0%
! GAAACCCTAGAGAAGAGTTT+TGG - chr7_1:60999243-60999262 Msa1028290:intron 40.0%
CATCTCCAAAACTCTTCTCT+AGG + chr7_1:60999251-60999270 None:intergenic 40.0%
! AATGAGTTGTGGGATTTGGT+TGG - chr7_1:60999453-60999472 Msa1028290:CDS 40.0%
! ATGAGTTGTGGGATTTGGTT+GGG - chr7_1:60999454-60999473 Msa1028290:CDS 40.0%
! GATTTGGTTGGGGAAGAATA+TGG - chr7_1:60999465-60999484 Msa1028290:CDS 40.0%
CCATCAACGACATTCTTCAA+AGG + chr7_1:60999558-60999577 None:intergenic 40.0%
! CCTTTGAAGAATGTCGTTGA+TGG - chr7_1:60999555-60999574 Msa1028290:CDS 40.0%
TGGGCGATAGAGTTAAGTTT+GGG - chr7_1:60999601-60999620 Msa1028290:CDS 40.0%
!! TAAGTTTGGGGAGCGTTTAA+CGG - chr7_1:60999614-60999633 Msa1028290:CDS 40.0%
!! GAGTTGGTGTTGGATGATTA+TGG - chr7_1:60999648-60999667 Msa1028290:CDS 40.0%
GTGTTGGATGATTATGGTGA+GGG - chr7_1:60999654-60999673 Msa1028290:CDS 40.0%
! TCAAGAGTGTATACGGATGT+AGG - chr7_1:60999694-60999713 Msa1028290:CDS 40.0%
TAGAGTGAAGGTTGTGAATC+CGG - chr7_1:60999737-60999756 Msa1028290:CDS 40.0%
TCCTTCACTCTCAACTTTCT+TGG + chr7_1:60999865-60999884 None:intergenic 40.0%
!! TGAGACTAGTCTCAGAAAGT+TGG - chr7_1:60999920-60999939 Msa1028290:CDS 40.0%
GGTTAACCAAAATGCTGCAA+TGG - chr7_1:60999941-60999960 Msa1028290:CDS 40.0%
! AATGATGACGCCAATGAAAG+TGG - chr7_1:61000035-61000054 Msa1028290:CDS 40.0%
! AAGAGAGCTTTGGTCGTAAA+AGG - chr7_1:61000096-61000115 Msa1028290:CDS 40.0%
CGATGTCAGAAATGCAAAGT+TGG - chr7_1:61000132-61000151 Msa1028290:intron 40.0%
AATCCTTGTGATCCTGTGTT+AGG - chr7_1:61000173-61000192 Msa1028290:intron 40.0%
CTTACGGTAATCATGAGATC+TGG - chr7_1:61000225-61000244 Msa1028290:intron 40.0%
TGTATTCATGTCCGTAGTCA+TGG - chr7_1:61000491-61000510 Msa1028290:intron 40.0%
CCTTGTTGAATGGTTGTTAG+GGG - chr7_1:61000543-61000562 Msa1028290:intron 40.0%
CTTGTTGAATGGTTGTTAGG+GGG - chr7_1:61000544-61000563 Msa1028290:intron 40.0%
AGAGCCTTAAGCAAATGGTA+AGG - chr7_1:61000869-61000888 Msa1028290:intron 40.0%
GAGCCTTAAGCAAATGGTAA+GGG - chr7_1:61000870-61000889 Msa1028290:intron 40.0%
AGCCTTAAGCAAATGGTAAG+GGG - chr7_1:61000871-61000890 Msa1028290:intron 40.0%
CATAAGGAGAATACCCAGTT+GGG - chr7_1:61000913-61000932 Msa1028290:intron 40.0%
AATCTCTGTTGGGTACAAGA+TGG + chr7_1:61000949-61000968 None:intergenic 40.0%
ATCTTGTACCCAACAGAGAT+TGG - chr7_1:61000948-61000967 Msa1028290:intron 40.0%
CAAAAACTTATGGCACATCG+AGG + chr7_1:61001174-61001193 None:intergenic 40.0%
TGGTGTGACAAACTAGAAGT+CGG + chr7_1:61001259-61001278 None:intergenic 40.0%
TTACTTGGGGATCGAGTTTA+AGG + chr7_1:61001372-61001391 None:intergenic 40.0%
TTACTCCCTTAGCCTCAATA+GGG + chr7_1:61001427-61001446 None:intergenic 40.0%
TTTACTCCCTTAGCCTCAAT+AGG + chr7_1:61001428-61001447 None:intergenic 40.0%
TATTGAGGCTAAGGGAGTAA+AGG - chr7_1:61001427-61001446 Msa1028290:intron 40.0%
ATTGAGGCTAAGGGAGTAAA+GGG - chr7_1:61001428-61001447 Msa1028290:intron 40.0%
AGGTATTCTGTGACTGATTG+AGG - chr7_1:61001536-61001555 Msa1028290:intron 40.0%
ACTGATTGAGGTCAGAACAT+TGG - chr7_1:61001548-61001567 Msa1028290:intron 40.0%
ATCGAGGCAAAGGGATTAAA+GGG + chr7_1:61001623-61001642 None:intergenic 40.0%
AATCGAGGCAAAGGGATTAA+AGG + chr7_1:61001624-61001643 None:intergenic 40.0%
TCGATTGAGGGCTATTGTTT+CGG - chr7_1:61001638-61001657 Msa1028290:intron 40.0%
CTAAAAGCCTCACACTGTAT+GGG - chr7_1:61001666-61001685 Msa1028290:intron 40.0%
!! TTCGAGGTATTGTCCACTTT+GGG + chr7_1:61001774-61001793 None:intergenic 40.0%
!! TTTCGAGGTATTGTCCACTT+TGG + chr7_1:61001775-61001794 None:intergenic 40.0%
AAACACAGTGATGTGACTTG+AGG - chr7_1:61001793-61001812 Msa1028290:intron 40.0%
!!! TCTGGCTTTTTTGTTGAGCT+TGG + chr7_1:61002108-61002127 None:intergenic 40.0%
!! ATAGAGGTCTTTTTCGTAGC+TGG - chr7_1:61002473-61002492 Msa1028290:CDS 40.0%
CTTGATTCAATGATACCAGG+TGG + chr7_1:61002534-61002553 None:intergenic 40.0%
!! TCTACCATTTTTAGGCTCAG+AGG - chr7_1:61002568-61002587 Msa1028290:CDS 40.0%
CCCAAGGTTATCATCATACA+TGG + chr7_1:61002604-61002623 None:intergenic 40.0%
AACGGATCAAACGTGACAAT+GGG - chr7_1:61002643-61002662 Msa1028290:CDS 40.0%
! TTTTCCTTAGCTTCGGAATC+AGG + chr7_1:61002708-61002727 None:intergenic 40.0%
! GGTGCATCAAGAATTGATTC+TGG + chr7_1:61002750-61002769 None:intergenic 40.0%
CTCACAAGAGTGATTCTAAG+TGG - chr7_1:61002835-61002854 Msa1028290:CDS 40.0%
AAGAGTGATTCTAAGTGGCT+GGG - chr7_1:61002840-61002859 Msa1028290:CDS 40.0%
! TCGGATTTTACGATTTGCAG+TGG + chr7_1:61002879-61002898 None:intergenic 40.0%
CTGCTTTGTCTAAATTCCAC+TGG + chr7_1:61003040-61003059 None:intergenic 40.0%
CAGTGGAATTTAGACAAAGC+AGG - chr7_1:61003038-61003057 Msa1028290:CDS 40.0%
GTGGAATTTAGACAAAGCAG+GGG - chr7_1:61003040-61003059 Msa1028290:CDS 40.0%
AACATCTATCAAGCGAAGCA+GGG + chr7_1:61003130-61003149 None:intergenic 40.0%
AAACATCTATCAAGCGAAGC+AGG + chr7_1:61003131-61003150 None:intergenic 40.0%
CTTCGCTTGATAGATGTTTC+TGG - chr7_1:61003132-61003151 Msa1028290:CDS 40.0%
CAACATTTCCTAAGAAGAGC+AGG - chr7_1:61003168-61003187 Msa1028290:CDS 40.0%
AAACTTTCCCTGCTCTTCTT+AGG + chr7_1:61003179-61003198 None:intergenic 40.0%
TGGCTTCTTAGGGGATAATA+AGG + chr7_1:61003354-61003373 None:intergenic 40.0%
! AGCTGTCTTCCTTTTGTATG+TGG + chr7_1:61003386-61003405 None:intergenic 40.0%
!!! AGATTGTTTTGGTGTAGGGT+CGG - chr7_1:61003549-61003568 Msa1028290:intron 40.0%
! ATTTTCACCAGGTTGTGACA+AGG - chr7_1:61003729-61003748 Msa1028290:five_prime_UTR 40.0%
! TTTTCACCAGGTTGTGACAA+GGG - chr7_1:61003730-61003749 Msa1028290:five_prime_UTR 40.0%
ACTGTTAAAACAACTGCGTC+AGG - chr7_1:61003760-61003779 Msa1028290:five_prime_UTR 40.0%
TGCCAGTTGGCATATAGAAA+AGG + chr7_1:61003933-61003952 None:intergenic 40.0%
TGGGAGGAGTCAATTGTATT+TGG - chr7_1:61004012-61004031 Msa1028290:five_prime_UTR 40.0%
CTGACATAGAAACAATGCGC+GGG - chr7_1:60998909-60998928 Msa1028290:three_prime_UTR 45.0%
!!! TTAGTTTTTGGGATGCGGGT+CGG - chr7_1:60999120-60999139 Msa1028290:three_prime_UTR 45.0%
TATGCATGACAGGGTTGTTG+TGG - chr7_1:60999212-60999231 Msa1028290:intron 45.0%
! TAAGCTGTTCATGGTGGTGA+AGG - chr7_1:60999401-60999420 Msa1028290:CDS 45.0%
! TTCATGGTGGTGAAGGACAA+AGG - chr7_1:60999408-60999427 Msa1028290:CDS 45.0%
! TGAGTTGTGGGATTTGGTTG+GGG - chr7_1:60999455-60999474 Msa1028290:CDS 45.0%
GTTGGGGAAGAATATGGGTT+GGG - chr7_1:60999471-60999490 Msa1028290:CDS 45.0%
!! TATGGGTTGGGTGTGAAAGT+TGG - chr7_1:60999483-60999502 Msa1028290:CDS 45.0%
! GGGTGTGAAAGTTGGTTCTT+CGG - chr7_1:60999491-60999510 Msa1028290:CDS 45.0%
TTCCCGAAGCGTGATTTAGT+GGG - chr7_1:60999582-60999601 Msa1028290:CDS 45.0%
GTGGGCGATAGAGTTAAGTT+TGG - chr7_1:60999600-60999619 Msa1028290:CDS 45.0%
GGGCGATAGAGTTAAGTTTG+GGG - chr7_1:60999602-60999621 Msa1028290:CDS 45.0%
! GGTGTTGGATGATTATGGTG+AGG - chr7_1:60999653-60999672 Msa1028290:CDS 45.0%
GATTATGGTGAGGGAGATGT+CGG - chr7_1:60999663-60999682 Msa1028290:CDS 45.0%
ATTATGGTGAGGGAGATGTC+GGG - chr7_1:60999664-60999683 Msa1028290:CDS 45.0%
AGTTCAGTCGCATTCAACTC+CGG + chr7_1:60999759-60999778 None:intergenic 45.0%
GAATGCGACTGAACTCGAAA+AGG - chr7_1:60999764-60999783 Msa1028290:CDS 45.0%
ATTGATGGGAGGAAGATGTC+TGG - chr7_1:60999798-60999817 Msa1028290:CDS 45.0%
GCCAAGAAAGTTGAGAGTGA+AGG - chr7_1:60999861-60999880 Msa1028290:CDS 45.0%
ACTAGTTGACGTGCTTATGC+AGG - chr7_1:60999884-60999903 Msa1028290:CDS 45.0%
! AGGCATGCTGTTTGCTACAT+CGG + chr7_1:60999985-61000004 None:intergenic 45.0%
TTGCTTCCATCTGACAATCC+AGG + chr7_1:61000005-61000024 None:intergenic 45.0%
! GACATCATCGCCACTTTCAT+TGG + chr7_1:61000048-61000067 None:intergenic 45.0%
TGGCGATGATGTCTTGATGT+TGG - chr7_1:61000055-61000074 Msa1028290:CDS 45.0%
GAACCTAACACAGGATCACA+AGG + chr7_1:61000179-61000198 None:intergenic 45.0%
!! TCAGGCATTGAACCTAACAC+AGG + chr7_1:61000188-61000207 None:intergenic 45.0%
CAGACTGTGAAAAACTCAGC+TGG - chr7_1:61000300-61000319 Msa1028290:intron 45.0%
CCCCTAACAACCATTCAACA+AGG + chr7_1:61000546-61000565 None:intergenic 45.0%
! ATGGGGTTGATTGAGTGGTA+AGG - chr7_1:61000840-61000859 Msa1028290:intron 45.0%
! TGGGGTTGATTGAGTGGTAA+GGG - chr7_1:61000841-61000860 Msa1028290:intron 45.0%
ACTCGAGAGCCTTAAGCAAA+TGG - chr7_1:61000864-61000883 Msa1028290:intron 45.0%
GCCTTAAGCAAATGGTAAGG+GGG - chr7_1:61000872-61000891 Msa1028290:intron 45.0%
ACCCCCTTACCATTTGCTTA+AGG + chr7_1:61000876-61000895 None:intergenic 45.0%
! TGACACTTGGCTCTTGCATA+AGG - chr7_1:61000897-61000916 Msa1028290:intron 45.0%
GCATAAGGAGAATACCCAGT+TGG - chr7_1:61000912-61000931 Msa1028290:intron 45.0%
! TGGATTTTCCACACCCAACT+GGG + chr7_1:61000929-61000948 None:intergenic 45.0%
! ATGGATTTTCCACACCCAAC+TGG + chr7_1:61000930-61000949 None:intergenic 45.0%
! TACCCAACAGAGATTGGTCA+CGG - chr7_1:61000954-61000973 Msa1028290:intron 45.0%
TACCGTGACCAATCTCTGTT+GGG + chr7_1:61000959-61000978 None:intergenic 45.0%
GTTTGTCACACCACCTTATG+AGG - chr7_1:61001266-61001285 Msa1028290:intron 45.0%
GCAGACAATACCTCATAAGG+TGG + chr7_1:61001279-61001298 None:intergenic 45.0%
TTAAACCCCGTTCCCACAAA+TGG - chr7_1:61001473-61001492 Msa1028290:intron 45.0%
TCACAGAATACCTCGAAAGG+AGG + chr7_1:61001529-61001548 None:intergenic 45.0%
CAGTCACAGAATACCTCGAA+AGG + chr7_1:61001532-61001551 None:intergenic 45.0%
!! AGAACATTGGTGCCGTCTAT+GGG - chr7_1:61001561-61001580 Msa1028290:intron 45.0%
GGAACCTTGATTCCCATAGA+CGG + chr7_1:61001576-61001595 None:intergenic 45.0%
TAATCCCTTTGCCTCGATTG+AGG - chr7_1:61001625-61001644 Msa1028290:intron 45.0%
AATCCCTTTGCCTCGATTGA+GGG - chr7_1:61001626-61001645 Msa1028290:intron 45.0%
GAAACAATAGCCCTCAATCG+AGG + chr7_1:61001639-61001658 None:intergenic 45.0%
! CCATACAGTGTGAGGCTTTT+AGG + chr7_1:61001668-61001687 None:intergenic 45.0%
CCTAAAAGCCTCACACTGTA+TGG - chr7_1:61001665-61001684 Msa1028290:intron 45.0%
! GTCACATCACTGTGTTTTCG+AGG + chr7_1:61001790-61001809 None:intergenic 45.0%
ACAGTGATGTGACTTGAGGT+CGG - chr7_1:61001797-61001816 Msa1028290:intron 45.0%
!! GTGAACCCTCTGTTGTTTCA+AGG + chr7_1:61002367-61002386 None:intergenic 45.0%
GCATCCTCTGAGCCTAAAAA+TGG + chr7_1:61002575-61002594 None:intergenic 45.0%
CAACGGATCAAACGTGACAA+TGG - chr7_1:61002642-61002661 Msa1028290:CDS 45.0%
ACGGATCAAACGTGACAATG+GGG - chr7_1:61002644-61002663 Msa1028290:CDS 45.0%
!! CGTGACAATGGGGTTTTAGT+TGG - chr7_1:61002654-61002673 Msa1028290:CDS 45.0%
AACACCTGATTCCGAAGCTA+AGG - chr7_1:61002701-61002720 Msa1028290:CDS 45.0%
CAAGAGTGATTCTAAGTGGC+TGG - chr7_1:61002839-61002858 Msa1028290:CDS 45.0%
AGTGGCTGGGAACTCAAATA+TGG - chr7_1:61002853-61002872 Msa1028290:CDS 45.0%
AGGTTCCCCTTCCAAAAGTT+CGG + chr7_1:61002898-61002917 None:intergenic 45.0%
GCTAGACTCAAGCTGGAAAT+AGG - chr7_1:61003002-61003021 Msa1028290:CDS 45.0%
ACTCAAGCTGGAAATAGGTG+TGG - chr7_1:61003007-61003026 Msa1028290:CDS 45.0%
! TATCAGGAGTATGCCTGTTC+TGG + chr7_1:61003247-61003266 None:intergenic 45.0%
!!! ACACCATTGAAGGGTGCTTT+TGG - chr7_1:61003299-61003318 Msa1028290:CDS 45.0%
!! TGTCCAAAAGCACCCTTCAA+TGG + chr7_1:61003305-61003324 None:intergenic 45.0%
! CTTCCTTTTGTATGTGGCGT+TGG + chr7_1:61003380-61003399 None:intergenic 45.0%
AAAGGAAGACAGCTAGTGCA+TGG - chr7_1:61003392-61003411 Msa1028290:five_prime_UTR 45.0%
GAGGTAAAAGATGCTGCCTT+TGG - chr7_1:61003576-61003595 Msa1028290:intron 45.0%
GTAAAAGATGCTGCCTTTGG+TGG - chr7_1:61003579-61003598 Msa1028290:intron 45.0%
!!! TAGTTTTTGGGATGCGGGTC+GGG - chr7_1:60999121-60999140 Msa1028290:three_prime_UTR 50.0%
! ATGGTGGTGAAGGACAAAGG+TGG - chr7_1:60999411-60999430 Msa1028290:CDS 50.0%
GGTTGGGGAAGAATATGGGT+TGG - chr7_1:60999470-60999489 Msa1028290:CDS 50.0%
GTTCCCGAAGCGTGATTTAG+TGG - chr7_1:60999581-60999600 Msa1028290:CDS 50.0%
TCGCCCACTAAATCACGCTT+CGG + chr7_1:60999588-60999607 None:intergenic 50.0%
TTATGGTGAGGGAGATGTCG+GGG - chr7_1:60999665-60999684 Msa1028290:CDS 50.0%
GATGTAGCAAACAGCATGCC+TGG - chr7_1:60999984-61000003 Msa1028290:CDS 50.0%
AGCATGCCTGGATTGTCAGA+TGG - chr7_1:60999996-61000015 Msa1028290:CDS 50.0%
CTGTGAAAAACTCAGCTGGC+TGG - chr7_1:61000304-61000323 Msa1028290:intron 50.0%
TGTGCTGAGACCATGCATCA+TGG - chr7_1:61000405-61000424 Msa1028290:intron 50.0%
ATGGGTCGCTCATTGTTGGA+TGG + chr7_1:61000633-61000652 None:intergenic 50.0%
GCAAATGGGTCGCTCATTGT+TGG + chr7_1:61000637-61000656 None:intergenic 50.0%
! CGTACATGGGGTTGATTGAG+TGG - chr7_1:61000835-61000854 Msa1028290:intron 50.0%
TGGTAAGGGGGTTTGACACT+TGG - chr7_1:61000884-61000903 Msa1028290:intron 50.0%
CTACCGTGACCAATCTCTGT+TGG + chr7_1:61000960-61000979 None:intergenic 50.0%
! ACAGAGATTGGTCACGGTAG+TGG - chr7_1:61000960-61000979 Msa1028290:intron 50.0%
GGTCTGTCAACCATTGTGCA+TGG - chr7_1:61001449-61001468 Msa1028290:intron 50.0%
GGGGTTTAAGCCATGCACAA+TGG + chr7_1:61001462-61001481 None:intergenic 50.0%
ATTGGCGCCATTTGTGGGAA+CGG + chr7_1:61001483-61001502 None:intergenic 50.0%
GGAACATTGGCGCCATTTGT+GGG + chr7_1:61001488-61001507 None:intergenic 50.0%
GAATACCTCGAAAGGAGGTG+TGG + chr7_1:61001524-61001543 None:intergenic 50.0%
!! CAGAACATTGGTGCCGTCTA+TGG - chr7_1:61001560-61001579 Msa1028290:intron 50.0%
AGGTTCCATGCCACGTTTGA+TGG - chr7_1:61001589-61001608 Msa1028290:intron 50.0%
TAGCCCTCAATCGAGGCAAA+GGG + chr7_1:61001632-61001651 None:intergenic 50.0%
ATAGCCCTCAATCGAGGCAA+AGG + chr7_1:61001633-61001652 None:intergenic 50.0%
AGCCTCACACTGTATGGGAA+TGG - chr7_1:61001671-61001690 Msa1028290:intron 50.0%
CTCCATTCCCATACAGTGTG+AGG + chr7_1:61001676-61001695 None:intergenic 50.0%
CTCACACTGTATGGGAATGG+AGG - chr7_1:61001674-61001693 Msa1028290:intron 50.0%
ACACACTCCTCAATCCAACG+AGG - chr7_1:61001719-61001738 Msa1028290:intron 50.0%
AACGAGGCGGACAAAACCAT+GGG - chr7_1:61001735-61001754 Msa1028290:intron 50.0%
AGCTCACACAAGACCCAAAG+TGG - chr7_1:61001758-61001777 Msa1028290:intron 50.0%
AGAGGGATATTCACTGTGGG+AGG + chr7_1:61002771-61002790 None:intergenic 50.0%
CCGAGAGGGATATTCACTGT+GGG + chr7_1:61002774-61002793 None:intergenic 50.0%
CCCACAGTGAATATCCCTCT+CGG - chr7_1:61002771-61002790 Msa1028290:CDS 50.0%
CCACAGTGAATATCCCTCTC+GGG - chr7_1:61002772-61002791 Msa1028290:CDS 50.0%
! GGCACTTCAGCTTGATGGTT+TGG + chr7_1:61002798-61002817 None:intergenic 50.0%
ATTCGGGCACTTCAGCTTGA+TGG + chr7_1:61002803-61002822 None:intergenic 50.0%
! ATCAAGCTGAAGTGCCCGAA+TGG - chr7_1:61002802-61002821 Msa1028290:CDS 50.0%
TGAGTTGTGCCAGTCCATTC+GGG + chr7_1:61002819-61002838 None:intergenic 50.0%
GTGAGTTGTGCCAGTCCATT+CGG + chr7_1:61002820-61002839 None:intergenic 50.0%
!! CTTTTGGAAGGGGAACCTGT+CGG - chr7_1:61002900-61002919 Msa1028290:CDS 50.0%
TCTTGTCTTCCCTTTCCGAC+AGG + chr7_1:61002918-61002937 None:intergenic 50.0%
ACAAGATTCATGCCGTTGCC+AGG - chr7_1:61002932-61002951 Msa1028290:CDS 50.0%
!! GAAAAGCGCTAGACTCAAGC+TGG - chr7_1:61002995-61003014 Msa1028290:CDS 50.0%
! TAGGTGTGGCCTTTTACCAG+TGG - chr7_1:61003021-61003040 Msa1028290:CDS 50.0%
ACAAAGCAGGGGAAGAAGTG+AGG - chr7_1:61003051-61003070 Msa1028290:CDS 50.0%
! GTCTTTCTTTTGCAGCGCAG+AGG - chr7_1:61003218-61003237 Msa1028290:CDS 50.0%
!! TTTGTATGTGGCGTTGGCTG+TGG + chr7_1:61003374-61003393 None:intergenic 50.0%
CAGCCAACGCCACATACAAA+AGG - chr7_1:61003374-61003393 Msa1028290:five_prime_UTR 50.0%
AAAGATGCTGCCTTTGGTGG+TGG - chr7_1:61003582-61003601 Msa1028290:intron 50.0%
TTAGCTGCTTCCACCACCAA+AGG + chr7_1:61003595-61003614 None:intergenic 50.0%
ATGCAACCCTTGTCACAACC+TGG + chr7_1:61003739-61003758 None:intergenic 50.0%
GACAGGGTTGTTGTGGAGCT+TGG - chr7_1:60999219-60999238 Msa1028290:intron 55.0%
CGCCCACTAAATCACGCTTC+GGG + chr7_1:60999587-60999606 None:intergenic 55.0%
! GGAGCGTTTAACGGAGTTGC+AGG - chr7_1:60999623-60999642 Msa1028290:CDS 55.0%
GCGTTTAACGGAGTTGCAGG+CGG - chr7_1:60999626-60999645 Msa1028290:CDS 55.0%
GGAGAATACCCAGTTGGGTG+TGG - chr7_1:61000918-61000937 Msa1028290:intron 55.0%
!! TTTTGGTGTGCCGGAACAGC+AGG - chr7_1:61001401-61001420 Msa1028290:intron 55.0%
CTCAATAGGGCCTGCTGTTC+CGG + chr7_1:61001414-61001433 None:intergenic 55.0%
AGCAGGCCCTATTGAGGCTA+AGG - chr7_1:61001418-61001437 Msa1028290:intron 55.0%
GCAGGCCCTATTGAGGCTAA+GGG - chr7_1:61001419-61001438 Msa1028290:intron 55.0%
TTGGCGCCATTTGTGGGAAC+GGG + chr7_1:61001482-61001501 None:intergenic 55.0%
CGGAACATTGGCGCCATTTG+TGG + chr7_1:61001489-61001508 None:intergenic 55.0%
CGGACTTGAGGTCGGAACAT+TGG + chr7_1:61001501-61001520 None:intergenic 55.0%
! TACCTCGAAAGGAGGTGTGG+CGG + chr7_1:61001521-61001540 None:intergenic 55.0%
! GGTGCCGTCTATGGGAATCA+AGG - chr7_1:61001569-61001588 Msa1028290:intron 55.0%
GTCAGCCATCAAACGTGGCA+TGG + chr7_1:61001597-61001616 None:intergenic 55.0%
GGTCTGTCAGCCATCAAACG+TGG + chr7_1:61001602-61001621 None:intergenic 55.0%
CACTCCTCAATCCAACGAGG+CGG - chr7_1:61001722-61001741 Msa1028290:intron 55.0%
TTGTCCGCCTCGTTGGATTG+AGG + chr7_1:61001729-61001748 None:intergenic 55.0%
!!! CATGGTTTTGTCCGCCTCGT+TGG + chr7_1:61001736-61001755 None:intergenic 55.0%
CAACGAGGCGGACAAAACCA+TGG - chr7_1:61001734-61001753 Msa1028290:intron 55.0%
CCCGAGAGGGATATTCACTG+TGG + chr7_1:61002775-61002794 None:intergenic 55.0%
! CTTGATGGTTTGGCCCGAGA+GGG + chr7_1:61002788-61002807 None:intergenic 55.0%
GAAGGGGAACCTGTCGGAAA+GGG - chr7_1:61002906-61002925 Msa1028290:CDS 55.0%
TTCATGCCGTTGCCAGGTAC+AGG - chr7_1:61002938-61002957 Msa1028290:CDS 55.0%
TCATGCCGTTGCCAGGTACA+GGG - chr7_1:61002939-61002958 Msa1028290:CDS 55.0%
CAGAACCCTGTACCTGGCAA+CGG + chr7_1:61002947-61002966 None:intergenic 55.0%
ACTCGACAGAACCCTGTACC+TGG + chr7_1:61002953-61002972 None:intergenic 55.0%
AGCGCAGAGGATACCAGAAC+AGG - chr7_1:61003231-61003250 Msa1028290:CDS 55.0%
! CGTTGGCTGTGGCTTCTTAG+GGG + chr7_1:61003363-61003382 None:intergenic 55.0%
!! GCGTTGGCTGTGGCTTCTTA+GGG + chr7_1:61003364-61003383 None:intergenic 55.0%
TTGGTGTAGGGTCGGCTATG+AGG - chr7_1:61003557-61003576 Msa1028290:intron 55.0%
AACGGAGTTGCAGGCGGAGT+TGG - chr7_1:60999632-60999651 Msa1028290:CDS 60.0%
!! GTTGCAGGCGGAGTTGGTGT+TGG - chr7_1:60999638-60999657 Msa1028290:CDS 60.0%
CGGAACAGCAGGCCCTATTG+AGG - chr7_1:61001412-61001431 Msa1028290:intron 60.0%
TGGCGCCATTTGTGGGAACG+GGG + chr7_1:61001481-61001500 None:intergenic 60.0%
!! AGGTGTGGCGGACTTGAGGT+CGG + chr7_1:61001509-61001528 None:intergenic 60.0%
!! AAGGAGGTGTGGCGGACTTG+AGG + chr7_1:61001513-61001532 None:intergenic 60.0%
! GGGTCTTGTGTGAGCTCCCA+TGG + chr7_1:61001754-61001773 None:intergenic 60.0%
! GCTTGATGGTTTGGCCCGAG+AGG + chr7_1:61002789-61002808 None:intergenic 60.0%
! GCTGAAGTGCCCGAATGGAC+TGG - chr7_1:61002807-61002826 Msa1028290:CDS 60.0%
GGAAGGGGAACCTGTCGGAA+AGG - chr7_1:61002905-61002924 Msa1028290:CDS 60.0%
GGGAAGAAGTGAGGCGATGC+TGG - chr7_1:61003060-61003079 Msa1028290:CDS 60.0%
!! GGCGTTGGCTGTGGCTTCTT+AGG + chr7_1:61003365-61003384 None:intergenic 60.0%
GTCCGCCACACCTCCTTTCG+AGG - chr7_1:61001516-61001535 Msa1028290:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60998669 61004058 60998669 ID=Msa1028290;Name=Msa1028290
chr7_1 mRNA 60998669 61004058 60998669 ID=Msa1028290-mRNA-1;Parent=Msa1028290;Name=Msa1028290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=515|1|1|1|0.33|0|4|501|600
chr7_1 exon 60998669 60999161 60998669 ID=Msa1028290-mRNA-1:exon:12806;Parent=Msa1028290-mRNA-1
chr7_1 exon 60999292 61000145 60999292 ID=Msa1028290-mRNA-1:exon:12805;Parent=Msa1028290-mRNA-1
chr7_1 exon 61002402 61003503 61002402 ID=Msa1028290-mRNA-1:exon:12804;Parent=Msa1028290-mRNA-1
chr7_1 exon 61003689 61004058 61003689 ID=Msa1028290-mRNA-1:exon:12803;Parent=Msa1028290-mRNA-1
chr7_1 five_prime_UTR 61003689 61004058 61003689 ID=Msa1028290-mRNA-1:five_prime_utr;Parent=Msa1028290-mRNA-1
chr7_1 five_prime_UTR 61003359 61003503 61003359 ID=Msa1028290-mRNA-1:five_prime_utr;Parent=Msa1028290-mRNA-1
chr7_1 CDS 61002402 61003358 61002402 ID=Msa1028290-mRNA-1:cds;Parent=Msa1028290-mRNA-1
chr7_1 CDS 60999300 61000145 60999300 ID=Msa1028290-mRNA-1:cds;Parent=Msa1028290-mRNA-1
chr7_1 three_prime_UTR 60999292 60999299 60999292 ID=Msa1028290-mRNA-1:three_prime_utr;Parent=Msa1028290-mRNA-1
chr7_1 three_prime_UTR 60998669 60999161 60998669 ID=Msa1028290-mRNA-1:three_prime_utr;Parent=Msa1028290-mRNA-1
Gene Sequence

>Msa1028290

ATGTTGGGTAGTGAGCAAACTTTAGATTTGTATAAGCTGTTCATGGTGGTGAAGGACAAAGGTGGTTATGATGTTGTTTGTAAGAATGAGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAAGTTGGTTCTTCGGTTAAACTTGTTTATAGTAAGTATCTGAGTGGTCTAGAGACGCCTTTGAAGAATGTCGTTGATGGTGAGTTCCCGAAGCGTGATTTAGTGGGCGATAGAGTTAAGTTTGGGGAGCGTTTAACGGAGTTGCAGGCGGAGTTGGTGTTGGATGATTATGGTGAGGGAGATGTCGGGGATGAAGTCAAGAGTGTATACGGATGTAGGAAGAAGTTGTGTGATACTAATAGAGTGAAGGTTGTGAATCCGGAGTTGAATGCGACTGAACTCGAAAAGGTATATGAGTACATTGATGGGAGGAAGATGTCTGGCACTAATAAAATGAAGGACACGAATCTTGTGTCTAATATGGCCAAGAAAGTTGAGAGTGAAGGACTAGTTGACGTGCTTATGCAGGATTGTAAGACGAATGAGACTAGTCTCAGAAAGTTGGTTAACCAAAATGCTGCAATGGAGATAATGGATTATGTATCCGATGTAGCAAACAGCATGCCTGGATTGTCAGATGGAAGCAAGAGTTGTGCTAATGATGACGCCAATGAAAGTGGCGATGATGTCTTGATGTTGGACCCATCTAGTGTTAATAAAGAGAGCTTTGGTCGTAAAAGGAAGAGAGACGACTCGATGTCAGAAATGCAAAGTTGGGTTACTAGAACTGCAAAGAATCCTTGTGATCCTGTGTTAGGTTCAATGCCTGAAAAGTCAAAATGGAAGTCTTACGGTAATCATGAGATCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTCTGAAAAAAGATTTTGGATCAGACTGTGAAAAACTCAGCTGGCTGGCTCAGAGGATGCATCCTTCCATGTATGATGATAACCTTGGGACAAATTACAATCTTAGACAACGGATCAAACGTGACAATGGGGTTTTAGTTGGAAAATCTGCATCTATCTTGCAAAGAACACCTGATTCCGAAGCTAAGGAAAAGTTACTCGACTCCTGTGTTCCAGAATCAATTCTTGATGCACCTCCCACAGTGAATATCCCTCTCGGGCCAAACCATCAAGCTGAAGTGCCCGAATGGACTGGCACAACTCACAAGAGTGATTCTAAGTGGCTGGGAACTCAAATATGGCCACTGCAAATCGTAAAATCCGAACTTTTGGAAGGGGAACCTGTCGGAAAGGGAAGACAAGATTCATGCCGTTGCCAGGTACAGGGTTCTGTCGAGTGTGTTCGATTTCACATTGCTGAGAAAAGCGCTAGACTCAAGCTGGAAATAGGTGTGGCCTTTTACCAGTGGAATTTAGACAAAGCAGGGGAAGAAGTGAGGCGATGCTGGACAGCTCAAGAAGAGAAAAAGTTCAAAGATGTAGTGAAATCGAACCCTGCTTCGCTTGATAGATGTTTCTGGGACGATATTTTCACAACATTTCCTAAGAAGAGCAGGGAAAGTTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGATACCAGAACAGGCATACTCCTGATAACATTGACAGTGATGATGAAGAATCGGAATTTACACCATTGAAGGGTGCTTTTGGACATCAAACTGATAAATCAAACAGCATCACCTTATTATCCCCTAAGAAGCCACAGCCAACGCCACATACAAAAGGAAGACAGCTAGTGCATGGCCTCAAATCATGA
Protein sequence

>Msa1028290

MLGSEQTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLKNVVDGEFPKRDLVGDRVKFGERLTELQAELVLDDYGEGDVGDEVKSVYGCRKKLCDTNRVKVVNPELNATELEKVYEYIDGRKMSGTNKMKDTNLVSNMAKKVESEGLVDVLMQDCKTNETSLRKLVNQNAAMEIMDYVSDVANSMPGLSDGSKSCANDDANESGDDVLMLDPSSVNKESFGRKRKRDDSMSEMQSWVTRTAKNPCDPVLGSMPEKSKWKSYGNHEIWKKVLLFREAAFLKKDFGSDCEKLSWLAQRMHPSMYDDNLGTNYNLRQRIKRDNGVLVGKSASILQRTPDSEAKEKLLDSCVPESILDAPPTVNIPLGPNHQAEVPEWTGTTHKSDSKWLGTQIWPLQIVKSELLEGEPVGKGRQDSCRCQVQGSVECVRFHIAEKSARLKLEIGVAFYQWNLDKAGEEVRRCWTAQEEKKFKDVVKSNPASLDRCFWDDIFTTFPKKSRESLVSYYFNVFLLQRRGYQNRHTPDNIDSDDEESEFTPLKGAFGHQTDKSNSITLLSPKKPQPTPHTKGRQLVHGLKS*