AlfalfaGEDB | Msa1152360

M. sativa cultivar zhongmu-4 / Msa1152360

KEGG: -
GO: GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234
PFAM: PF16040.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152360	XP_013449144.1	93.960	447	23	1	1	443	1	447	0.0	806

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152360	sp\|Q6DBH0\|APD2_ARATH	44.444	414	215	5	32	443	44	444	1.22e-108	331

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152360	A0A072U142	93.960	447	23	1	1	443	1	447	0.0	806

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0099090	Msa1152360	0.807124	5.892263e-50	-8.615850e-47
Msa0232170	Msa1152360	0.813719	2.219947e-51	-8.615850e-47
Msa0232660	Msa1152360	0.803120	4.056138e-49	-8.615850e-47
Msa0571900	Msa1152360	0.801198	1.008445e-48	-8.615850e-47
Msa0829770	Msa1152360	0.805087	1.581205e-49	-8.615850e-47
Msa1039150	Msa1152360	0.803574	3.266851e-49	-8.615850e-47
Msa1152360	Msa1307110	0.803906	2.786969e-49	-8.615850e-47
Msa1152360	Msa1381300	0.806407	8.349650e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152360	MtrunA17_Chr7g0242481	92.935	184	7	2	1	180	1	182	2.15e-100	298
Msa1152360	MtrunA17_Chr7g0242501	94.964	139	7	0	305	443	10	148	6.94e-95	282
Msa1152360	MtrunA17_Chr7g0242491	86.400	125	10	1	181	305	28	145	1.20e-70	220
Msa1152360	MtrunA17_Chr3g0104791	41.146	192	99	5	231	419	6	186	1.88e-41	145
Msa1152360	MtrunA17_Chr1g0152861	25.122	410	251	12	52	441	29	402	4.20e-39	145
Msa1152360	MtrunA17_Chr3g0104781	38.333	180	104	2	3	181	2	175	8.17e-35	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1152360	AT5G01450.1	44.444	414	215	5	32	443	44	444	1.24e-109	331
Msa1152360	AT2G38185.2	43.687	396	202	8	56	443	59	441	5.85e-107	324
Msa1152360	AT2G38185.1	43.687	396	202	8	56	443	59	441	5.85e-107	324
Msa1152360	AT2G38185.4	43.532	402	200	9	56	443	59	447	1.50e-105	320
Msa1152360	AT2G38220.1	40.253	395	193	10	60	442	40	403	5.15e-91	281
Msa1152360	AT2G38220.2	40.051	392	195	10	60	442	40	400	3.82e-88	274
Msa1152360	AT2G38195.1	40.000	390	196	10	60	442	40	398	4.01e-87	271
Msa1152360	AT2G38185.3	44.444	297	145	7	154	443	63	346	6.46e-77	243
Msa1152360	AT2G38195.2	39.763	337	166	9	113	443	21	326	7.62e-72	229
Msa1152360	AT4G24204.3	28.191	188	100	8	261	440	13	173	1.37e-16	77.8

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Find 148 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATGTAAGCCATCT+TGG	0.396430	7_4:-37746961	None:intergenic
AAAGATCATCTTTGCGTGAA+AGG	0.495437	7_4:-37747191	None:intergenic
AACAAATCGCACAAAGACGC+TGG	0.511589	7_4:-37747326	None:intergenic
AACTGACCTATGGACCAAGA+TGG	0.651620	7_4:+37746947	Msa1152360:CDS
AAGAAGATATTCATTCTGCA+TGG	0.583093	7_4:-37746614	None:intergenic
AAGACAGCTGTGTTTCTGTC+AGG	0.472874	7_4:-37746638	None:intergenic
AAGACGCTGGGTGCTATTAC+TGG	0.368025	7_4:-37747313	None:intergenic
AAGCTTGTTGAAGAAGTTGT+AGG	0.388279	7_4:-37747103	None:intergenic
AATCCAGGACTCATTCTTTA+TGG	0.203517	7_4:+37743182	Msa1152360:CDS
AATCTTGCCTGTTGTGGAGC+AGG	0.441330	7_4:-37746668	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGATTGAATTTGTAGTGTT+TGG	+	chr7_4:37742130-37742149	Msa1152360:intron	30.0%
GTAGTGTTTGGTAAAATTAG+TGG	+	chr7_4:37742142-37742161	Msa1152360:intron	30.0%
ATTAAGTTAGTTATGGCAGT+TGG	+	chr7_4:37742444-37742463	Msa1152360:intron	30.0%
TTATGCATAAACGCTTATCA+TGG	+	chr7_4:37742694-37742713	Msa1152360:intron	30.0%
ACTTTGTAATGTTACAGTTG+CGG	+	chr7_4:37742945-37742964	Msa1152360:intron	30.0%
TCACATATTGCACAAACATA+GGG	-	chr7_4:37743047-37743066	None:intergenic	30.0%
TTCACATATTGCACAAACAT+AGG	-	chr7_4:37743048-37743067	None:intergenic	30.0%
TATGTTTGTGCAATATGTGA+AGG	+	chr7_4:37743047-37743066	Msa1152360:CDS	30.0%
GCATTAGGTAGAAAACTTAA+AGG	+	chr7_4:37743157-37743176	Msa1152360:intron	30.0%
AGATAATATTTCCATTCCTG+GGG	-	chr7_4:37743423-37743442	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	37741668	37748124	37741668	ID=Msa1152360;Name=Msa1152360
chr7_4	mRNA	37741668	37748124	37741668	ID=Msa1152360-mRNA-1;Parent=Msa1152360;Name=Msa1152360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=40\|0.66\|0.5\|1\|1\|1\|10\|214\|443
chr7_4	exon	37741668	37741921	37741668	ID=Msa1152360-mRNA-1:exon:9004;Parent=Msa1152360-mRNA-1
chr7_4	exon	37742962	37743068	37742962	ID=Msa1152360-mRNA-1:exon:9005;Parent=Msa1152360-mRNA-1
chr7_4	exon	37743164	37743286	37743164	ID=Msa1152360-mRNA-1:exon:9006;Parent=Msa1152360-mRNA-1
chr7_4	exon	37743426	37743519	37743426	ID=Msa1152360-mRNA-1:exon:9007;Parent=Msa1152360-mRNA-1
chr7_4	exon	37744925	37744999	37744925	ID=Msa1152360-mRNA-1:exon:9008;Parent=Msa1152360-mRNA-1
chr7_4	exon	37745076	37745155	37745076	ID=Msa1152360-mRNA-1:exon:9009;Parent=Msa1152360-mRNA-1
chr7_4	exon	37746536	37746682	37746536	ID=Msa1152360-mRNA-1:exon:9010;Parent=Msa1152360-mRNA-1
chr7_4	exon	37746919	37746991	37746919	ID=Msa1152360-mRNA-1:exon:9011;Parent=Msa1152360-mRNA-1
chr7_4	exon	37747076	37747418	37747076	ID=Msa1152360-mRNA-1:exon:9012;Parent=Msa1152360-mRNA-1
chr7_4	exon	37747835	37748124	37747835	ID=Msa1152360-mRNA-1:exon:9013;Parent=Msa1152360-mRNA-1
chr7_4	five_prime_UTR	37741668	37741707	37741668	ID=Msa1152360-mRNA-1:five_prime_utr;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37741708	37741921	37741708	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37742962	37743068	37742962	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37743164	37743286	37743164	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37743426	37743519	37743426	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37744925	37744999	37744925	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37745076	37745155	37745076	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37746536	37746682	37746536	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37746919	37746991	37746919	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37747076	37747418	37747076	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	CDS	37747835	37747910	37747835	ID=Msa1152360-mRNA-1:cds;Parent=Msa1152360-mRNA-1
chr7_4	three_prime_UTR	37747911	37748124	37747911	ID=Msa1152360-mRNA-1:three_prime_utr;Parent=Msa1152360-mRNA-1

Gene Sequence

>Msa1152360

ATGGAAGAACCGAATTCCGCCACCGCAACTCCTTCATCTTCCACGGCCAACGGTGAAACTTCTCAACCAAACGAAAATGCTCAAGTCTCACCGAACCGTCCACGCATGAGCATCATCTACGGGAGATTCGCACGGCGTATCAACGGTCACTCCGCCATTGCTAGGGATGATAACTGCTCTTGCTTAGCCGTTACCTTCTGCTTTTGGTTCTTCGTTGCGGTGATAATGATAATGGGGGTTTATGGGTCGATGAGTGTGGTTCTAGGTCCATTTTCCTCACTCATCTTGCAACCTAACCCTATGTTTGTGCAATATGTGAAGGTAGAAAACTTAAAGGCAAATCCAGGACTCATTCTTTATGGTACACATCAAGATCCACCTCTTGATGTTGTTTCCACTTGGAGCGAAACCCATAATATATCTATTCCTTATGGCTCAGTTAAGGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTAAATATTTCGTATAACTTGAGCTCTGAGAACTCCTCTCTTTATCTTGTAATTGCAGAAGGAGCTCAAAGCCTCTCCCTATGGCTGCAAGACCTAACATATCCCAATACAACGCTGTCTTGGAATGTGATCCGGGGAACTGGTATGATTACACAGAAAATATTCAGGTCATCCAGCTATTATGTGGCATTGGGTAATTTGGATGAGGAGGTGAAGGTTGAATTAAACCTCACTGTAAGGGCCTTCTTGCACAACACAACAAATGCTTACTACAAATGTGCCCTGACTGGTCATCCATGCAGAATGAATATCTTCTTTCCTGACAGAAACACAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGATGAGTGGTATGTCAAACTGACCTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGTTCTGACTTTGATTATGTTTTGGGCCTACAACTTCTTCAACAAGCTTCAATGTTCACATGATGATAGAGTAGGATCTAGATCTGAAGGAACAGGACCTGATCGAGCCCCTTTCCTTTCACGCAAAGATGATCTTTCAAGGGGTTCATCATATGATTCCTTACCAGAGGATGATGAGGATCTTAACTTTGTCCCCGGATGTTCCACTGATGGGAAGATATTAGGTGATGGTGAGACCAGTAATAGCACCCAGCGTCTTTGTGCGATTTGTTTTGATGCTCCACGAGACTGCTTCTTCCTTCCATGTGGTCACTGTGTGGCTTGTTTTGCATGTGGATCTAGGATAGCTGAGGCAGCAGGTACATGTCCTGTTTGTCGTAGGGACATGAAGAAGGTGAGGAGAATTTTTACTGTTTGA

Protein sequence

>Msa1152360

MEEPNSATATPSSSTANGETSQPNENAQVSPNRPRMSIIYGRFARRINGHSAIARDDNCSCLAVTFCFWFFVAVIMIMGVYGSMSVVLGPFSSLILQPNPMFVQYVKVENLKANPGLILYGTHQDPPLDVVSTWSETHNISIPYGSVKEWKYYLNRGSEVNISYNLSSENSSLYLVIAEGAQSLSLWLQDLTYPNTTLSWNVIRGTGMITQKIFRSSSYYVALGNLDEEVKVELNLTVRAFLHNTTNAYYKCALTGHPCRMNIFFPDRNTAVLVSPAPQQNTSNDEWYVKLTYGPRWLTYIFGIGVLTLIMFWAYNFFNKLQCSHDDRVGSRSEGTGPDRAPFLSRKDDLSRGSSYDSLPEDDEDLNFVPGCSTDGKILGDGETSNSTQRLCAICFDAPRDCFFLPCGHCVACFACGSRIAEAAGTCPVCRRDMKKVRRIFTV*