AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0232660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232660 MtrunA17_Chr2g0280091 93.275 461 30 1 10 469 1 461 0.0 873
Msa0232660 MtrunA17_Chr4g0049371 70.565 513 114 4 16 510 36 529 0.0 732
Msa0232660 MtrunA17_Chr5g0411431 62.919 507 159 5 16 507 5 497 0.0 620
Msa0232660 MtrunA17_Chr2g0280111 73.092 249 22 2 262 510 13 216 3.18e-120 352
Msa0232660 MtrunA17_Chr2g0280101 80.214 187 18 2 43 214 1 183 2.84e-97 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232660 AT5G64500.1 60.079 506 148 3 6 493 14 483 0.0 611
Msa0232660 AT2G22730.3 61.010 495 177 3 17 495 38 532 0.0 603
Msa0232660 AT2G22730.2 60.736 489 175 3 17 490 38 524 0.0 587
Msa0232660 AT2G22730.6 59.229 493 163 4 17 495 38 506 0.0 579
Msa0232660 AT2G22730.1 58.932 487 161 4 17 490 38 498 0.0 564
Msa0232660 AT5G65687.1 53.411 513 201 6 5 501 2 492 0.0 535
Msa0232660 AT2G22730.7 61.058 416 158 2 78 491 1 414 7.95e-179 509
Msa0232660 AT2G22730.5 59.698 397 145 2 17 398 38 434 2.27e-161 468
Msa0232660 AT2G22730.4 56.461 356 118 3 17 359 38 369 2.32e-134 394

Find 111 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTATCAAATGCATTTA+AGG 0.118415 2_2:+4942448 Msa0232660:CDS
ACTGATTCAGATTTGGTATT+TGG 0.129701 2_2:+4942356 Msa0232660:CDS
ATGCTTCCATTTGCTATTTC+AGG 0.131188 2_2:+4941272 Msa0232660:CDS
CTTAGGTGCTTACTCATATT+GGG 0.163614 2_2:+4942113 Msa0232660:CDS
TTGGTTGGCGTTATGCATTC+TGG 0.184635 2_2:+4941234 Msa0232660:CDS
GATTAATTTGTTAAACTATT+TGG 0.194774 2_2:+4939241 Msa0232660:CDS
GTAAATCCATTTAGACTTAT+AGG 0.204179 2_2:+4940417 Msa0232660:CDS
CTCTCAGTGACAACATTTCT+TGG 0.208157 2_2:+4942884 Msa0232660:CDS
TAACAGATTGGAAGTAATTT+TGG 0.216065 2_2:+4941215 Msa0232660:intron
GTTTATATTATCAATGTTCT+AGG 0.217385 2_2:+4941856 Msa0232660:CDS
CCAACTCCTATAAGTCTAAA+TGG 0.221380 2_2:-4940423 None:intergenic
TCTTAGGTGCTTACTCATAT+TGG 0.225768 2_2:+4942112 Msa0232660:CDS
TATGCACTTGGCTATGTTTA+TGG 0.253229 2_2:+4941056 Msa0232660:CDS
ACCGTTGCCATTCATCTCTT+TGG 0.255031 2_2:+4943368 Msa0232660:CDS
TACAATTGTATGTGGAATAG+TGG 0.292899 2_2:+4942385 Msa0232660:CDS
CCATGATTCCCACAACTTCA+TGG 0.295748 2_2:+4938927 Msa0232660:CDS
GATATGAATTTCATAGGAAA+TGG 0.309390 2_2:-4944612 None:intergenic
ATAGCGTACAACTTTGTCTT+AGG 0.313540 2_2:+4942096 Msa0232660:CDS
ATAGCTAGCAATGGTGTTAA+TGG 0.334552 2_2:+4939275 Msa0232660:CDS
TGTTCCTGTTGATTTGATAA+AGG 0.334594 2_2:+4941404 Msa0232660:CDS
TAAATATTGTAGACAACTTT+GGG 0.335747 2_2:-4942138 None:intergenic
TCCAGCCGCTGGACACAATA+TGG 0.344058 2_2:-4944055 None:intergenic
TCCATTGATATGAATTTCAT+AGG 0.345780 2_2:-4944618 None:intergenic
GTGCCTTCCTCACCCCTTGT+TGG 0.349853 2_2:+4943395 Msa0232660:CDS
TCTCAGTGACAACATTTCTT+GGG 0.352146 2_2:+4942885 Msa0232660:CDS
TGACAATGCCCCGGCTTCTC+TGG 0.352641 2_2:+4940707 Msa0232660:CDS
TTGGCAGACTGATTCAGATT+TGG 0.357099 2_2:+4942349 Msa0232660:intron
TTAGTTATACAATACCTCTT+TGG 0.358595 2_2:-4938956 None:intergenic
TGTGTCCAGCGGCTGGAATA+TGG 0.373453 2_2:+4944061 Msa0232660:CDS
TCCTATGAAATTCATATCAA+TGG 0.379668 2_2:+4944617 Msa0232660:three_prime_UTR
GGGAATCATGGATGACACTA+TGG 0.383133 2_2:-4938915 None:intergenic
ATAAATATTGTAGACAACTT+TGG 0.392903 2_2:-4942139 None:intergenic
TGAGCTAGAGAGGCAAATAT+TGG 0.393358 2_2:-4939911 None:intergenic
TGGCTATGTTTATGGTGGTT+TGG 0.400561 2_2:+4941064 Msa0232660:CDS
AACATCCAAAGTCTTGTTCA+TGG 0.403880 2_2:+4938886 Msa0232660:CDS
ATTGGCTGGAGGATTTGTTC+TGG 0.405042 2_2:+4942412 Msa0232660:CDS
ACCCCTTGTTGGAGTTCTCC+AGG 0.406458 2_2:+4943406 Msa0232660:CDS
ATATGAATTTCATAGGAAAT+GGG 0.412946 2_2:-4944611 None:intergenic
ATGAGATATTGATGTTTCTT+CGG 0.414184 2_2:-4944451 None:intergenic
GGAATAGTGGGCACATTGGC+TGG 0.421757 2_2:+4942398 Msa0232660:CDS
CTGGACACAATATGGTTGTT+AGG 0.422253 2_2:-4944047 None:intergenic
GACCTTAAATGCATTTGATA+AGG 0.427906 2_2:-4942450 None:intergenic
AAAATGATTTCATGATAAAT+CGG 0.428841 2_2:-4944571 None:intergenic
CCATTTAGACTTATAGGAGT+TGG 0.430523 2_2:+4940423 Msa0232660:CDS
TGTGCCTTTATCAAATCAAC+AGG 0.433163 2_2:-4941408 None:intergenic
ACATCTAGTGTTAGATAGAA+AGG 0.436620 2_2:+4938820 Msa0232660:five_prime_UTR
TTGTTAAACTATTTGGATCA+AGG 0.438250 2_2:+4939248 Msa0232660:CDS
TGGTTGGCGTTATGCATTCT+GGG 0.445125 2_2:+4941235 Msa0232660:CDS
ACCATATTGTGTCCAGCGGC+TGG 0.445261 2_2:+4944054 Msa0232660:CDS
GTAGACATGGCCATGGATAA+AGG 0.447565 2_2:-4943347 None:intergenic
GCGGCTGGAATATGGTTTAT+CGG 0.450229 2_2:+4944069 Msa0232660:CDS
AAAAGCAAACCAGAGAAGCC+GGG 0.461774 2_2:-4940716 None:intergenic
CTGTATAGGCTGGTTGGTGT+TGG 0.467793 2_2:+4940645 Msa0232660:intron
TCTGTACCTTTCAACTGTAA+AGG 0.468312 2_2:-4941308 None:intergenic
GATTCAGATTTGGTATTTGG+AGG 0.468406 2_2:+4942359 Msa0232660:CDS
CCATGAAGTTGTGGGAATCA+TGG 0.468969 2_2:-4938927 None:intergenic
AATGGTGTTAATGGAAGTAC+AGG 0.469707 2_2:+4939284 Msa0232660:CDS
ATTATTCTGTATAGGCTGGT+TGG 0.470521 2_2:+4940639 Msa0232660:intron
ATTCACATTTCTGCATAAGA+AGG 0.471652 2_2:-4942927 None:intergenic
TGCAGGATAGCATTAACAAC+TGG 0.476380 2_2:+4944007 Msa0232660:intron
GGAGGAATTACAATTGTATG+TGG 0.480593 2_2:+4942377 Msa0232660:CDS
TTACATGCGACAGACAGAAA+TGG 0.486623 2_2:-4940502 None:intergenic
TTCTTATGCAGAAATGTGAA+TGG 0.488398 2_2:+4942929 Msa0232660:CDS
GTACCTGACACAGTTGCATC+AGG 0.504773 2_2:+4941432 Msa0232660:CDS
ACTCCTGATGCAACTGTGTC+AGG 0.507213 2_2:-4941435 None:intergenic
TCGGTCTTCTCTTGAAGTAA+CGG 0.507598 2_2:-4944432 None:intergenic
ATGGATAAAGGTCTCAAACT+TGG 0.508812 2_2:-4943335 None:intergenic
GACCTGGAGAACTCCAACAA+GGG 0.512863 2_2:-4943408 None:intergenic
GGTGTAAACCATGAAGTTGT+GGG 0.513168 2_2:-4938935 None:intergenic
ACAGTTGCATCAGGAGTTCA+TGG 0.514390 2_2:+4941441 Msa0232660:CDS
ATGAAGCCTTTACAGTTGAA+AGG 0.521699 2_2:+4941302 Msa0232660:CDS
CTCAGTGACAACATTTCTTG+GGG 0.529695 2_2:+4942886 Msa0232660:CDS
TGGTTCCATGAACAAGACTT+TGG 0.542185 2_2:-4938891 None:intergenic
CACATCTCCAAAGAGATGAA+TGG 0.546684 2_2:-4943375 None:intergenic
TAATATAAACATTATCAAGC+AGG 0.549607 2_2:-4941843 None:intergenic
TTAGGTGCTTACTCATATTG+GGG 0.554059 2_2:+4942114 Msa0232660:CDS
GAGAACTCCAACAAGGGGTG+AGG 0.555912 2_2:-4943402 None:intergenic
ATAAACCATATTCCAGCCGC+TGG 0.562993 2_2:-4944066 None:intergenic
ATGAATGGCAACGGTAGACA+TGG 0.568087 2_2:-4943360 None:intergenic
AAGTTTGAGACCTTTATCCA+TGG 0.571776 2_2:+4943337 Msa0232660:CDS
ATACCATCTGGATATGCACT+TGG 0.571968 2_2:+4941044 Msa0232660:CDS
ACAATTGTATGTGGAATAGT+GGG 0.577169 2_2:+4942386 Msa0232660:CDS
TGGTGTAAACCATGAAGTTG+TGG 0.580859 2_2:-4938936 None:intergenic
CTTCATGGTTTACACCAAAG+AGG 0.583890 2_2:+4938942 Msa0232660:CDS
AAAGTCACGAACGCTTCTAA+CGG 0.584653 2_2:+4941567 Msa0232660:intron
AGGAATATTTGTGCATAGTG+TGG 0.587748 2_2:+4944368 Msa0232660:intron
GCACTTGGCTATGTTTATGG+TGG 0.591399 2_2:+4941059 Msa0232660:CDS
ACTCCAACAAGGGGTGAGGA+AGG 0.592984 2_2:-4943398 None:intergenic
TTTCATTGATGACAATGCCC+CGG 0.593463 2_2:+4940698 Msa0232660:CDS
TGAAGACATACAAAATTCAC+CGG 0.596057 2_2:-4943302 None:intergenic
AAAGCAAACCAGAGAAGCCG+GGG 0.600500 2_2:-4940715 None:intergenic
TAGGAGTTGGATTGTCAATG+TGG 0.604600 2_2:+4940436 Msa0232660:CDS
GGCAACGGTAGACATGGCCA+TGG 0.609428 2_2:-4943354 None:intergenic
GGGGCATTGTCATCAATGAA+AGG 0.612101 2_2:-4940696 None:intergenic
TGACCTGGAGAACTCCAACA+AGG 0.616410 2_2:-4943409 None:intergenic
TAGGCTGGTTGGTGTTGGTG+AGG 0.618424 2_2:+4940650 Msa0232660:intron
ACCTGGAGAACTCCAACAAG+GGG 0.622922 2_2:-4943407 None:intergenic
GGAATCATGGATGACACTAT+GGG 0.627440 2_2:-4938914 None:intergenic
TGTCTACAATATTTATAACA+TGG 0.628485 2_2:+4942146 Msa0232660:CDS
TCCAAAGAGATGAATGGCAA+CGG 0.630729 2_2:-4943369 None:intergenic
TAATTACCTCTGAGCTAGAG+AGG 0.634819 2_2:-4939921 None:intergenic
CAAGGAGCAATAGCTAGCAA+TGG 0.636477 2_2:+4939266 Msa0232660:CDS
AACAACCATATTGTGTCCAG+CGG 0.642017 2_2:+4944050 Msa0232660:CDS
GCATTGTCATCAATGAAAGG+TGG 0.643797 2_2:-4940693 None:intergenic
TAGCCAAGTGCATATCCAGA+TGG 0.650333 2_2:-4941047 None:intergenic
ATCATGGATGACACTATGGG+TGG 0.677731 2_2:-4938911 None:intergenic
ATAGTGGGCACATTGGCTGG+AGG 0.691542 2_2:+4942401 Msa0232660:CDS
ATGTGGAATAGTGGGCACAT+TGG 0.702676 2_2:+4942394 Msa0232660:CDS
GTGTGTATCAGAAAACAACA+TGG 0.704469 2_2:+4941000 Msa0232660:intron
ATAGAAGGAAAGTACCTGAG+TGG 0.719596 2_2:-4942993 None:intergenic
TATTTGCCTCTCTAGCTCAG+AGG 0.719961 2_2:+4939915 Msa0232660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTGTTAAACTATT+TGG + chr2_2:4939241-4939260 Msa0232660:CDS 15.0%
!! GTATATCTAATAATAAGAAT+AGG - chr2_2:4939979-4939998 None:intergenic 15.0%
!! TTATGTAAAGAAATTTACAA+GGG - chr2_2:4940745-4940764 None:intergenic 15.0%
!! ATTATGTAAAGAAATTTACA+AGG - chr2_2:4940746-4940765 None:intergenic 15.0%
!! ATATACAAGAAATCAATAAT+TGG - chr2_2:4941690-4941709 None:intergenic 15.0%
!! TGTATAAAATAAAACATGTT+TGG + chr2_2:4942253-4942272 Msa0232660:intron 15.0%
!! AATCTGAAAAATAATACTTT+GGG - chr2_2:4943862-4943881 None:intergenic 15.0%
!! TCAAAAAAAATTCTAACTTA+TGG - chr2_2:4944330-4944349 None:intergenic 15.0%
!! AAAATGATTTCATGATAAAT+CGG - chr2_2:4944574-4944593 None:intergenic 15.0%
!!! ATAAACGTTTTATCCAATTT+TGG + chr2_2:4939085-4939104 Msa0232660:intron 20.0%
!!! TAAACGTTTTATCCAATTTT+GGG + chr2_2:4939086-4939105 Msa0232660:intron 20.0%
!!! AATGTTCTTTTTTGTTTTGT+AGG + chr2_2:4939198-4939217 Msa0232660:intron 20.0%
!! AAATATATGAATTGTGAGAA+AGG - chr2_2:4940391-4940410 None:intergenic 20.0%
!! AATCATTAGTACTAAACTTA+TGG + chr2_2:4940583-4940602 Msa0232660:intron 20.0%
!! GAAATCAATAATTGGAAAAA+TGG - chr2_2:4941682-4941701 None:intergenic 20.0%
!! GTCTAACATTTATAATTTAG+TGG + chr2_2:4941716-4941735 Msa0232660:intron 20.0%
!! TAATATAAACATTATCAAGC+AGG - chr2_2:4941846-4941865 None:intergenic 20.0%
!! GTTTATATTATCAATGTTCT+AGG + chr2_2:4941856-4941875 Msa0232660:CDS 20.0%
!! ACAAATAGATAATTAAGTCA+CGG - chr2_2:4942069-4942088 None:intergenic 20.0%
!! TGACTTAATTATCTATTTGT+AGG + chr2_2:4942069-4942088 Msa0232660:intron 20.0%
!! TAAATATTGTAGACAACTTT+GGG - chr2_2:4942141-4942160 None:intergenic 20.0%
!! ATAAATATTGTAGACAACTT+TGG - chr2_2:4942142-4942161 None:intergenic 20.0%
!! TGTCTACAATATTTATAACA+TGG + chr2_2:4942146-4942165 Msa0232660:CDS 20.0%
!!! AAAGGTATATTAATGCATAA+GGG - chr2_2:4942196-4942215 None:intergenic 20.0%
!!! TAAAGGTATATTAATGCATA+AGG - chr2_2:4942197-4942216 None:intergenic 20.0%
!! TTAATATACCTTTACTATCA+TGG + chr2_2:4942203-4942222 Msa0232660:intron 20.0%
!!! TATTACTTTCATACCTTTTT+AGG + chr2_2:4942500-4942519 Msa0232660:intron 20.0%
!!! ATTTAAGATTTCTTTACTTG+AGG + chr2_2:4942640-4942659 Msa0232660:intron 20.0%
!! TAAGTTTACAATGTAAAATC+AGG + chr2_2:4943662-4943681 Msa0232660:intron 20.0%
!! GAATCTGAAAAATAATACTT+TGG - chr2_2:4943863-4943882 None:intergenic 20.0%
!! AAAAAAATTCTAACTTATGG+AGG - chr2_2:4944327-4944346 None:intergenic 20.0%
!! ATATGAATTTCATAGGAAAT+GGG - chr2_2:4944614-4944633 None:intergenic 20.0%
!!! TTGAAAAACTTTGAGTTGAA+TGG - chr2_2:4938792-4938811 None:intergenic 25.0%
! TTAGTTATACAATACCTCTT+TGG - chr2_2:4938959-4938978 None:intergenic 25.0%
!! TTCATTCTTCTTTGCATTTT+TGG + chr2_2:4939048-4939067 Msa0232660:intron 25.0%
! AATTGAAACAAACCCAAAAT+TGG - chr2_2:4939101-4939120 None:intergenic 25.0%
!!! TTTTGGGTTTGTTTCAATTT+TGG + chr2_2:4939102-4939121 Msa0232660:intron 25.0%
!!! TTTTTGTTTTGTAGGTTACT+TGG + chr2_2:4939206-4939225 Msa0232660:intron 25.0%
! TTGTTAAACTATTTGGATCA+AGG + chr2_2:4939248-4939267 Msa0232660:CDS 25.0%
! AACAAGAAATCAAGAACATA+GGG + chr2_2:4939349-4939368 Msa0232660:intron 25.0%
! CGTATAAATTCAATGCTTTA+AGG + chr2_2:4939582-4939601 Msa0232660:intron 25.0%
!!! AATTCAATGCTTTAAGGTTT+TGG + chr2_2:4939588-4939607 Msa0232660:intron 25.0%
!!! ATTCAATGCTTTAAGGTTTT+GGG + chr2_2:4939589-4939608 Msa0232660:intron 25.0%
! ATGTTACACTATCAATGTTA+GGG - chr2_2:4939755-4939774 None:intergenic 25.0%
!!! AACTTGAACAATTTTGAAGA+TGG + chr2_2:4939845-4939864 Msa0232660:CDS 25.0%
!!! AGTTTTATCATCTGCTTTTA+TGG + chr2_2:4939868-4939887 Msa0232660:CDS 25.0%
! AGAATAGGTTTCATATTGAT+TGG - chr2_2:4939964-4939983 None:intergenic 25.0%
! ATTTGCAACTTATCTTATGA+AGG - chr2_2:4940033-4940052 None:intergenic 25.0%
! AATTTGATATCATTGCTCTA+TGG - chr2_2:4940094-4940113 None:intergenic 25.0%
! TGAAATTGAATGTGTATTTG+AGG + chr2_2:4940134-4940153 Msa0232660:intron 25.0%
! AGCAAAATTACTACAATAGT+TGG + chr2_2:4940220-4940239 Msa0232660:intron 25.0%
! GTAAATCCATTTAGACTTAT+AGG + chr2_2:4940417-4940436 Msa0232660:CDS 25.0%
! TTGAAAATCTAATCAAGCTT+AGG + chr2_2:4940771-4940790 Msa0232660:intron 25.0%
! TAGTATTTAGTATTAGACAG+TGG - chr2_2:4941113-4941132 None:intergenic 25.0%
! TACTAAATATCCATATGTAC+TGG + chr2_2:4941128-4941147 Msa0232660:intron 25.0%
!! TAACAGATTGGAAGTAATTT+TGG + chr2_2:4941215-4941234 Msa0232660:intron 25.0%
! AAAAATCCTGAAATAGCAAA+TGG - chr2_2:4941281-4941300 None:intergenic 25.0%
!! CAAACAAGTGAATTTTGTTA+AGG - chr2_2:4941543-4941562 None:intergenic 25.0%
! GGAAAAATGGTTATTTAAGA+AGG - chr2_2:4941669-4941688 None:intergenic 25.0%
!!! ATCTGACAGATTCTTATTTT+AGG + chr2_2:4941758-4941777 Msa0232660:intron 25.0%
! TTTACAATATGAAGTTCACA+GGG - chr2_2:4941989-4942008 None:intergenic 25.0%
!! TTTTACAATATGAAGTTCAC+AGG - chr2_2:4941990-4942009 None:intergenic 25.0%
! AAATAGATAATTAAGTCACG+GGG - chr2_2:4942067-4942086 None:intergenic 25.0%
! CAAATAGATAATTAAGTCAC+GGG - chr2_2:4942068-4942087 None:intergenic 25.0%
! ACAATATTTATAACATGGTG+AGG + chr2_2:4942151-4942170 Msa0232660:intron 25.0%
!! ATGTTAAACTTGGCTTATTT+TGG + chr2_2:4942330-4942349 Msa0232660:intron 25.0%
!! TTATCAAATGCATTTAAGGT+CGG + chr2_2:4942452-4942471 Msa0232660:intron 25.0%
! AAGATACTATGAACCTAAAA+AGG - chr2_2:4942516-4942535 None:intergenic 25.0%
!! ATAGGGTTGTAATTTGTAAA+CGG + chr2_2:4942591-4942610 Msa0232660:intron 25.0%
!! TAGTTAAAAGTTTAGCTTAC+TGG - chr2_2:4942812-4942831 None:intergenic 25.0%
!! TTTCTTGTTCTTTTCTCTAT+TGG + chr2_2:4942953-4942972 Msa0232660:CDS 25.0%
!!! TAGGAATTTTCAAGATCAAA+TGG - chr2_2:4943121-4943140 None:intergenic 25.0%
! TTCTTGTCAAGAATTTAACT+AGG - chr2_2:4943140-4943159 None:intergenic 25.0%
! AGTAAAATAACCTCTACATT+TGG + chr2_2:4943176-4943195 Msa0232660:intron 25.0%
! ATCTAAATTTCCAAATGTAG+AGG - chr2_2:4943189-4943208 None:intergenic 25.0%
! AAGAACTAAATCTCATTGTA+CGG + chr2_2:4943224-4943243 Msa0232660:intron 25.0%
! TGAATATTTACATTTGCTTG+CGG + chr2_2:4943264-4943283 Msa0232660:intron 25.0%
! CAATGATTAAAAACTGCAAA+TGG - chr2_2:4943479-4943498 None:intergenic 25.0%
! TAATTTCCAAAACAAAGGTA+TGG - chr2_2:4943502-4943521 None:intergenic 25.0%
! CAACATAATTTCCAAAACAA+AGG - chr2_2:4943507-4943526 None:intergenic 25.0%
!!! CACTTTAAAGTTGTTGATTT+CGG + chr2_2:4943559-4943578 Msa0232660:intron 25.0%
! AAACTATACATCGTTTGTAT+TGG + chr2_2:4943741-4943760 Msa0232660:intron 25.0%
! TGTATGAAGTAAACTATGTT+AGG - chr2_2:4943791-4943810 None:intergenic 25.0%
! TAGTTTACTTCATACATCTA+TGG + chr2_2:4943795-4943814 Msa0232660:intron 25.0%
! ATGAGATATTGATGTTTCTT+CGG - chr2_2:4944454-4944473 None:intergenic 25.0%
! GATATGAATTTCATAGGAAA+TGG - chr2_2:4944615-4944634 None:intergenic 25.0%
! TCCTATGAAATTCATATCAA+TGG + chr2_2:4944617-4944636 Msa0232660:three_prime_UTR 25.0%
! TCCATTGATATGAATTTCAT+AGG - chr2_2:4944621-4944640 None:intergenic 25.0%
ACATCTAGTGTTAGATAGAA+AGG + chr2_2:4938820-4938839 Msa0232660:five_prime_UTR 30.0%
!!! TGCATTTTTGGTATATCATG+TGG + chr2_2:4939060-4939079 Msa0232660:intron 30.0%
!!! GCATTTTTGGTATATCATGT+GGG + chr2_2:4939061-4939080 Msa0232660:intron 30.0%
!!! CATTTTTGGTATATCATGTG+GGG + chr2_2:4939062-4939081 Msa0232660:intron 30.0%
!! TTTCTTGTTCTGAGAAAAGA+AGG - chr2_2:4939338-4939357 None:intergenic 30.0%
GAACAAGAAATCAAGAACAT+AGG + chr2_2:4939348-4939367 Msa0232660:intron 30.0%
AACAACCTAGTGATCATATT+TGG + chr2_2:4939390-4939409 Msa0232660:intron 30.0%
CTAGTGATCATATTTGGTTA+CGG + chr2_2:4939396-4939415 Msa0232660:intron 30.0%
TAGTGATCATATTTGGTTAC+GGG + chr2_2:4939397-4939416 Msa0232660:intron 30.0%
TACTTAGTTGGACGAAAAAT+AGG - chr2_2:4939423-4939442 None:intergenic 30.0%
TATCTTCCGTCCAATTATAA+TGG + chr2_2:4939705-4939724 Msa0232660:intron 30.0%
ATCTTCCGTCCAATTATAAT+GGG + chr2_2:4939706-4939725 Msa0232660:intron 30.0%
CATGTTACACTATCAATGTT+AGG - chr2_2:4939756-4939775 None:intergenic 30.0%
!! TTATCATCTGCTTTTATGGT+TGG + chr2_2:4939872-4939891 Msa0232660:CDS 30.0%
! CATATTGATTGGAACATGAA+TGG - chr2_2:4939953-4939972 None:intergenic 30.0%
CATTCAATTTCACATCAAGA+AGG - chr2_2:4940126-4940145 None:intergenic 30.0%
ATGTAAGAACTTCAGTGTAA+TGG - chr2_2:4940269-4940288 None:intergenic 30.0%
GAAAGAAAAACCACAAAAGA+AGG - chr2_2:4940472-4940491 None:intergenic 30.0%
! GTGGTTTTTCTTTCAATTTC+TGG + chr2_2:4940478-4940497 Msa0232660:CDS 30.0%
ATGCCTTCATTATTCTGTAT+AGG + chr2_2:4940631-4940650 Msa0232660:intron 30.0%
TTGAAATGAACGAAGCAAAA+TGG - chr2_2:4940902-4940921 None:intergenic 30.0%
! TTTTACATGTGTATACCATC+TGG + chr2_2:4941032-4941051 Msa0232660:CDS 30.0%
! GATTCTTTTTCCAGTACATA+TGG - chr2_2:4941141-4941160 None:intergenic 30.0%
CAATCTGTTAATACACACAA+AGG - chr2_2:4941205-4941224 None:intergenic 30.0%
CTTTGTGTGTATTAACAGAT+TGG + chr2_2:4941203-4941222 Msa0232660:intron 30.0%
!! AGATTGGAAGTAATTTTGGT+TGG + chr2_2:4941219-4941238 Msa0232660:intron 30.0%
! GGTACAGATTTTTCTTGAAT+TGG + chr2_2:4941323-4941342 Msa0232660:intron 30.0%
!! TGTTCCTGTTGATTTGATAA+AGG + chr2_2:4941404-4941423 Msa0232660:CDS 30.0%
TTAAACCAGAAATGAGTATC+AGG - chr2_2:4941489-4941508 None:intergenic 30.0%
! AGATGAGTCATTGTCTTTTA+AGG + chr2_2:4941593-4941612 Msa0232660:CDS 30.0%
! GTTTTTGTTCTAACTTGGAT+TGG - chr2_2:4941647-4941666 None:intergenic 30.0%
! AGAAGGTTTTTGTTCTAACT+TGG - chr2_2:4941652-4941671 None:intergenic 30.0%
ATTAATGCATAAGGGATCAT+TGG - chr2_2:4942188-4942207 None:intergenic 30.0%
ATGAACAACCATGATAGTAA+AGG - chr2_2:4942214-4942233 None:intergenic 30.0%
ATAAAACATGTTTGGCATTC+TGG + chr2_2:4942261-4942280 Msa0232660:intron 30.0%
! ACTGATTCAGATTTGGTATT+TGG + chr2_2:4942356-4942375 Msa0232660:CDS 30.0%
TACAATTGTATGTGGAATAG+TGG + chr2_2:4942385-4942404 Msa0232660:CDS 30.0%
ACAATTGTATGTGGAATAGT+GGG + chr2_2:4942386-4942405 Msa0232660:CDS 30.0%
CACCTTATCAAATGCATTTA+AGG + chr2_2:4942448-4942467 Msa0232660:CDS 30.0%
GACCTTAAATGCATTTGATA+AGG - chr2_2:4942453-4942472 None:intergenic 30.0%
GAACAATAAATTGAGCATCA+TGG + chr2_2:4942696-4942715 Msa0232660:intron 30.0%
TGGTTACAGTTGTATGAAAT+AGG + chr2_2:4942716-4942735 Msa0232660:intron 30.0%
TATTAGGAGGAAAATCTCTT+TGG - chr2_2:4942756-4942775 None:intergenic 30.0%
! TTACAAGTCGACTCAATATT+AGG - chr2_2:4942772-4942791 None:intergenic 30.0%
!! AATATTGAGTCGACTTGTAA+CGG + chr2_2:4942772-4942791 Msa0232660:intron 30.0%
ATTCACATTTCTGCATAAGA+AGG - chr2_2:4942930-4942949 None:intergenic 30.0%
TTCTTATGCAGAAATGTGAA+TGG + chr2_2:4942929-4942948 Msa0232660:CDS 30.0%
!! GTACAATGAGATTTAGTTCT+TGG - chr2_2:4943225-4943244 None:intergenic 30.0%
TGAAGACATACAAAATTCAC+CGG - chr2_2:4943305-4943324 None:intergenic 30.0%
TTTGGAAATTATGTTGCCAA+CGG + chr2_2:4943511-4943530 Msa0232660:intron 30.0%
! GTTGATTTCGGAAAATAAAG+TGG + chr2_2:4943571-4943590 Msa0232660:intron 30.0%
!! TAATTTTAGCCATCAATGTG+TGG - chr2_2:4943610-4943629 None:intergenic 30.0%
! ACACATTGATGGCTAAAATT+AGG + chr2_2:4943609-4943628 Msa0232660:intron 30.0%
! CTATGGTCATCATAGATTTT+AGG + chr2_2:4943812-4943831 Msa0232660:intron 30.0%
! CACAATACATTTTCTGTGAT+CGG - chr2_2:4943963-4943982 None:intergenic 30.0%
!!! TGGAATTTTTTGACACACTA+TGG + chr2_2:4943981-4944000 Msa0232660:intron 30.0%
!! TGAAAGCTTTTGAGAAAATG+TGG - chr2_2:4944257-4944276 None:intergenic 30.0%
TAACTTATGGAGGACTTATT+TGG - chr2_2:4944317-4944336 None:intergenic 30.0%
! CATTTTTGTCAGTTGAGTTA+GGG - chr2_2:4944551-4944570 None:intergenic 30.0%
!! AACATCCAAAGTCTTGTTCA+TGG + chr2_2:4938886-4938905 Msa0232660:CDS 35.0%
TAAGCAACACTAACAGAAGA+GGG - chr2_2:4939177-4939196 None:intergenic 35.0%
ATAAGCAACACTAACAGAAG+AGG - chr2_2:4939178-4939197 None:intergenic 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG + chr2_2:4939275-4939294 Msa0232660:CDS 35.0%
! AATGGTGTTAATGGAAGTAC+AGG + chr2_2:4939284-4939303 Msa0232660:CDS 35.0%
CGTAACCAAATATGATCACT+AGG - chr2_2:4939398-4939417 None:intergenic 35.0%
! GAGCATTTGAGTTCAAATCT+GGG + chr2_2:4939469-4939488 Msa0232660:intron 35.0%
TACGACCTCTCACTTATAAA+GGG - chr2_2:4939566-4939585 None:intergenic 35.0%
ATACGACCTCTCACTTATAA+AGG - chr2_2:4939567-4939586 None:intergenic 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG + chr2_2:4939600-4939619 Msa0232660:intron 35.0%
ATAAGTAAAGTCTAGCCAAG+TGG - chr2_2:4939688-4939707 None:intergenic 35.0%
ACATCAGCACCCATTATAAT+TGG - chr2_2:4939718-4939737 None:intergenic 35.0%
! ATATTTTTCCTGTTGTGTGC+AGG + chr2_2:4939813-4939832 Msa0232660:intron 35.0%
! TATTTTTCCTGTTGTGTGCA+GGG + chr2_2:4939814-4939833 Msa0232660:intron 35.0%
TTGATATCATTGCTCTATGG+TGG - chr2_2:4940091-4940110 None:intergenic 35.0%
! TGTATTTGAGGCAATCTTCT+TGG + chr2_2:4940146-4940165 Msa0232660:intron 35.0%
CTGAAGTTCTTACATCTGAT+AGG + chr2_2:4940274-4940293 Msa0232660:intron 35.0%
GCACATACAAGGAAAAAGAT+CGG - chr2_2:4940325-4940344 None:intergenic 35.0%
GTGAGAAAGGATTCTTATGT+CGG - chr2_2:4940378-4940397 None:intergenic 35.0%
CCAACTCCTATAAGTCTAAA+TGG - chr2_2:4940426-4940445 None:intergenic 35.0%
CCATTTAGACTTATAGGAGT+TGG + chr2_2:4940423-4940442 Msa0232660:CDS 35.0%
CAGCCTATACAGAATAATGA+AGG - chr2_2:4940637-4940656 None:intergenic 35.0%
CTTCATTATTCTGTATAGGC+TGG + chr2_2:4940635-4940654 Msa0232660:intron 35.0%
ATTATTCTGTATAGGCTGGT+TGG + chr2_2:4940639-4940658 Msa0232660:intron 35.0%
CAACAATTGACAAATGGCAT+TGG - chr2_2:4940929-4940948 None:intergenic 35.0%
CATAAAGAAGAAAGAACAGC+AGG - chr2_2:4940952-4940971 None:intergenic 35.0%
CTGCTGTTCTTTCTTCTTTA+TGG + chr2_2:4940950-4940969 Msa0232660:intron 35.0%
CTGTTCTTTCTTCTTTATGG+TGG + chr2_2:4940953-4940972 Msa0232660:intron 35.0%
GTGTGTATCAGAAAACAACA+TGG + chr2_2:4941000-4941019 Msa0232660:intron 35.0%
TATGCACTTGGCTATGTTTA+TGG + chr2_2:4941056-4941075 Msa0232660:CDS 35.0%
TTTAGTATTAGACAGTGGCA+GGG - chr2_2:4941108-4941127 None:intergenic 35.0%
ATTTAGTATTAGACAGTGGC+AGG - chr2_2:4941109-4941128 None:intergenic 35.0%
!! ATGCTTCCATTTGCTATTTC+AGG + chr2_2:4941272-4941291 Msa0232660:CDS 35.0%
ATGAAGCCTTTACAGTTGAA+AGG + chr2_2:4941302-4941321 Msa0232660:CDS 35.0%
TCTGTACCTTTCAACTGTAA+AGG - chr2_2:4941311-4941330 None:intergenic 35.0%
ACCGACGGAAAACAATAATA+GGG - chr2_2:4941361-4941380 None:intergenic 35.0%
TACCGACGGAAAACAATAAT+AGG - chr2_2:4941362-4941381 None:intergenic 35.0%
AAATCAACAGGAACAAAACC+TGG - chr2_2:4941399-4941418 None:intergenic 35.0%
TGTGCCTTTATCAAATCAAC+AGG - chr2_2:4941411-4941430 None:intergenic 35.0%
! ATTAGCCTGATACTCATTTC+TGG + chr2_2:4941481-4941500 Msa0232660:intron 35.0%
ATAGCGTACAACTTTGTCTT+AGG + chr2_2:4942096-4942115 Msa0232660:CDS 35.0%
TCTTAGGTGCTTACTCATAT+TGG + chr2_2:4942112-4942131 Msa0232660:CDS 35.0%
CTTAGGTGCTTACTCATATT+GGG + chr2_2:4942113-4942132 Msa0232660:CDS 35.0%
TTAGGTGCTTACTCATATTG+GGG + chr2_2:4942114-4942133 Msa0232660:CDS 35.0%
TGCTGTTGTCATGTTAAACT+TGG + chr2_2:4942320-4942339 Msa0232660:intron 35.0%
! GATTCAGATTTGGTATTTGG+AGG + chr2_2:4942359-4942378 Msa0232660:CDS 35.0%
GGAGGAATTACAATTGTATG+TGG + chr2_2:4942377-4942396 Msa0232660:CDS 35.0%
!! ACAGCTGTGGTCTTATTTAT+AGG + chr2_2:4942573-4942592 Msa0232660:intron 35.0%
!! CAGCTGTGGTCTTATTTATA+GGG + chr2_2:4942574-4942593 Msa0232660:intron 35.0%
ACTTGTAACGGTCTAGTAAA+TGG + chr2_2:4942784-4942803 Msa0232660:intron 35.0%
TCTCAGTGACAACATTTCTT+GGG + chr2_2:4942885-4942904 Msa0232660:CDS 35.0%
!! CAATGAGATTTAGTTCTTGG+AGG - chr2_2:4943222-4943241 None:intergenic 35.0%
ATGGATAAAGGTCTCAAACT+TGG - chr2_2:4943338-4943357 None:intergenic 35.0%
! AAGTTTGAGACCTTTATCCA+TGG + chr2_2:4943337-4943356 Msa0232660:CDS 35.0%
!! TCATTGCCATACCTTTGTTT+TGG + chr2_2:4943493-4943512 Msa0232660:intron 35.0%
! TCTGTGATCGGTAATTTTCT+CGG - chr2_2:4943951-4943970 None:intergenic 35.0%
CGATCACAGAAAATGTATTG+TGG + chr2_2:4943961-4943980 Msa0232660:intron 35.0%
TTTGACATGTCACTATTGCA+AGG + chr2_2:4944110-4944129 Msa0232660:intron 35.0%
TTGACATGTCACTATTGCAA+GGG + chr2_2:4944111-4944130 Msa0232660:intron 35.0%
TCAAACCTAACCTCTCAAAT+TGG + chr2_2:4944208-4944227 Msa0232660:intron 35.0%
!! AAGCTTTTGAGAAAATGTGG+TGG - chr2_2:4944254-4944273 None:intergenic 35.0%
! TTGGTGACAATGTATAGAAG+AGG - chr2_2:4944298-4944317 None:intergenic 35.0%
GACATCTGATGTTAATGTGT+AGG + chr2_2:4944348-4944367 Msa0232660:intron 35.0%
AGGAATATTTGTGCATAGTG+TGG + chr2_2:4944368-4944387 Msa0232660:intron 35.0%
! GCATTTTTGTCAGTTGAGTT+AGG - chr2_2:4944552-4944571 None:intergenic 35.0%
TGGTTCCATGAACAAGACTT+TGG - chr2_2:4938894-4938913 None:intergenic 40.0%
GGAATCATGGATGACACTAT+GGG - chr2_2:4938917-4938936 None:intergenic 40.0%
GGTGTAAACCATGAAGTTGT+GGG - chr2_2:4938938-4938957 None:intergenic 40.0%
TGGTGTAAACCATGAAGTTG+TGG - chr2_2:4938939-4938958 None:intergenic 40.0%
CTTCATGGTTTACACCAAAG+AGG + chr2_2:4938942-4938961 Msa0232660:CDS 40.0%
!! AAGAACATAGGGTGTTGTCA+TGG + chr2_2:4939360-4939379 Msa0232660:intron 40.0%
TTTCGTCCAACTAAGTAGCT+AGG + chr2_2:4939426-4939445 Msa0232660:intron 40.0%
! GGAGCATTTGAGTTCAAATC+TGG + chr2_2:4939468-4939487 Msa0232660:intron 40.0%
! CATTTGAGTTCAAATCTGGG+TGG + chr2_2:4939472-4939491 Msa0232660:intron 40.0%
TTGAGCCCTTTATAAGTGAG+AGG + chr2_2:4939558-4939577 Msa0232660:intron 40.0%
CAGCACCCATTATAATTGGA+CGG - chr2_2:4939714-4939733 None:intergenic 40.0%
! ATTTTTCCTGTTGTGTGCAG+GGG + chr2_2:4939815-4939834 Msa0232660:intron 40.0%
! TTTTATGGTTGGACTTCTCG+TGG + chr2_2:4939883-4939902 Msa0232660:CDS 40.0%
TGAGCTAGAGAGGCAAATAT+TGG - chr2_2:4939914-4939933 None:intergenic 40.0%
TAATTACCTCTGAGCTAGAG+AGG - chr2_2:4939924-4939943 None:intergenic 40.0%
!! GAACTTCAGTGTAATGGACA+AGG - chr2_2:4940263-4940282 None:intergenic 40.0%
TACAACATGCAGCACATACA+AGG - chr2_2:4940336-4940355 None:intergenic 40.0%
TAGGAGTTGGATTGTCAATG+TGG + chr2_2:4940436-4940455 Msa0232660:CDS 40.0%
TTACATGCGACAGACAGAAA+TGG - chr2_2:4940505-4940524 None:intergenic 40.0%
GCATTGTCATCAATGAAAGG+TGG - chr2_2:4940696-4940715 None:intergenic 40.0%
! TTTCATTGATGACAATGCCC+CGG + chr2_2:4940698-4940717 Msa0232660:CDS 40.0%
AAAAAGCAAACCAGAGAAGC+CGG - chr2_2:4940720-4940739 None:intergenic 40.0%
AGCAGGCAACAATTGACAAA+TGG - chr2_2:4940935-4940954 None:intergenic 40.0%
ATACCATCTGGATATGCACT+TGG + chr2_2:4941044-4941063 Msa0232660:CDS 40.0%
TGGCTATGTTTATGGTGGTT+TGG + chr2_2:4941064-4941083 Msa0232660:CDS 40.0%
!! TGGTTTGGTAAGTCTCTATC+TGG + chr2_2:4941079-4941098 Msa0232660:intron 40.0%
CCGACGGAAAACAATAATAG+GGG - chr2_2:4941360-4941379 None:intergenic 40.0%
! CCCCTATTATTGTTTTCCGT+CGG + chr2_2:4941357-4941376 Msa0232660:intron 40.0%
! ATCCAGAACTAGTTTACCGA+CGG - chr2_2:4941376-4941395 None:intergenic 40.0%
AAAGTCACGAACGCTTCTAA+CGG + chr2_2:4941567-4941586 Msa0232660:intron 40.0%
! TTGGCAGACTGATTCAGATT+TGG + chr2_2:4942349-4942368 Msa0232660:intron 40.0%
TTGTAAACGGTCTTCTGATC+TGG + chr2_2:4942604-4942623 Msa0232660:intron 40.0%
! CAAGTCGACTCAATATTAGG+AGG - chr2_2:4942769-4942788 None:intergenic 40.0%
CTCTCAGTGACAACATTTCT+TGG + chr2_2:4942884-4942903 Msa0232660:CDS 40.0%
CTCAGTGACAACATTTCTTG+GGG + chr2_2:4942886-4942905 Msa0232660:CDS 40.0%
!!! ACTTCTTGTTTTTGCCACTC+AGG + chr2_2:4942979-4942998 Msa0232660:CDS 40.0%
!! ATAGAAGGAAAGTACCTGAG+TGG - chr2_2:4942996-4943015 None:intergenic 40.0%
! TTGCTTGCGGTTTTCTTTTC+AGG + chr2_2:4943277-4943296 Msa0232660:intron 40.0%
! TGCTTGCGGTTTTCTTTTCA+GGG + chr2_2:4943278-4943297 Msa0232660:intron 40.0%
TCCAAAGAGATGAATGGCAA+CGG - chr2_2:4943372-4943391 None:intergenic 40.0%
CACATCTCCAAAGAGATGAA+TGG - chr2_2:4943378-4943397 None:intergenic 40.0%
!!! GTTGCTTTTCCACACATTGA+TGG + chr2_2:4943598-4943617 Msa0232660:intron 40.0%
ATGTTAGGCTTACAGCTTTC+AGG - chr2_2:4943776-4943795 None:intergenic 40.0%
ATGCATTACTTGCAAAGCAG+AGG + chr2_2:4943911-4943930 Msa0232660:intron 40.0%
TGCATTACTTGCAAAGCAGA+GGG + chr2_2:4943912-4943931 Msa0232660:intron 40.0%
! TTGACACACTATGGTAATGC+AGG + chr2_2:4943990-4944009 Msa0232660:intron 40.0%
TGCAGGATAGCATTAACAAC+TGG + chr2_2:4944007-4944026 Msa0232660:intron 40.0%
CTGGACACAATATGGTTGTT+AGG - chr2_2:4944050-4944069 None:intergenic 40.0%
AACAACCATATTGTGTCCAG+CGG + chr2_2:4944050-4944069 Msa0232660:CDS 40.0%
TTGAGAGGTTAGGTTTGACT+TGG - chr2_2:4944206-4944225 None:intergenic 40.0%
! CTTTAGAGGACCAATTTGAG+AGG - chr2_2:4944221-4944240 None:intergenic 40.0%
TCGGTCTTCTCTTGAAGTAA+CGG - chr2_2:4944435-4944454 None:intergenic 40.0%
ATCATGGATGACACTATGGG+TGG - chr2_2:4938914-4938933 None:intergenic 45.0%
GGGAATCATGGATGACACTA+TGG - chr2_2:4938918-4938937 None:intergenic 45.0%
CCATGAAGTTGTGGGAATCA+TGG - chr2_2:4938930-4938949 None:intergenic 45.0%
CCATGATTCCCACAACTTCA+TGG + chr2_2:4938927-4938946 Msa0232660:CDS 45.0%
CTCCTATTTCCATCCATGCT+GGG + chr2_2:4939003-4939022 Msa0232660:intron 45.0%
TACCCAGCATGGATGGAAAT+AGG - chr2_2:4939008-4939027 None:intergenic 45.0%
! TGTTACTTACCCAGCATGGA+TGG - chr2_2:4939015-4939034 None:intergenic 45.0%
! CCTTTGTTACTTACCCAGCA+TGG - chr2_2:4939019-4939038 None:intergenic 45.0%
CCATGCTGGGTAAGTAACAA+AGG + chr2_2:4939016-4939035 Msa0232660:intron 45.0%
CAAGGAGCAATAGCTAGCAA+TGG + chr2_2:4939266-4939285 Msa0232660:CDS 45.0%
CTTGAGCCTAGCTACTTAGT+TGG - chr2_2:4939435-4939454 None:intergenic 45.0%
ACTAAGTAGCTAGGCTCAAG+TGG + chr2_2:4939435-4939454 Msa0232660:intron 45.0%
AGGCTCAAGTGGTTCACATT+CGG + chr2_2:4939446-4939465 Msa0232660:intron 45.0%
CACACTGCTTAGAAAAGTCG+AGG + chr2_2:4939535-4939554 Msa0232660:intron 45.0%
TGGTGTTCAACTCACTTGTG+TGG + chr2_2:4939620-4939639 Msa0232660:intron 45.0%
!! AGGGGAGTATCATCCACATT+AGG - chr2_2:4939656-4939675 None:intergenic 45.0%
GTAAAGTCTAGCCAAGTGGT+GGG - chr2_2:4939684-4939703 None:intergenic 45.0%
AGTAAAGTCTAGCCAAGTGG+TGG - chr2_2:4939685-4939704 None:intergenic 45.0%
! TTTTTCCTGTTGTGTGCAGG+GGG + chr2_2:4939816-4939835 Msa0232660:intron 45.0%
! TATTTGCCTCTCTAGCTCAG+AGG + chr2_2:4939915-4939934 Msa0232660:CDS 45.0%
! ACTCTTGCGACCTTCTTTTG+TGG + chr2_2:4940459-4940478 Msa0232660:CDS 45.0%
TTCTGTCTGTCGCATGTAAG+TGG + chr2_2:4940506-4940525 Msa0232660:intron 45.0%
!! GGGGCATTGTCATCAATGAA+AGG - chr2_2:4940699-4940718 None:intergenic 45.0%
AAAAGCAAACCAGAGAAGCC+GGG - chr2_2:4940719-4940738 None:intergenic 45.0%
TAGCCAAGTGCATATCCAGA+TGG - chr2_2:4941050-4941069 None:intergenic 45.0%
GCACTTGGCTATGTTTATGG+TGG + chr2_2:4941059-4941078 Msa0232660:CDS 45.0%
TTGGTTGGCGTTATGCATTC+TGG + chr2_2:4941234-4941253 Msa0232660:CDS 45.0%
TGGTTGGCGTTATGCATTCT+GGG + chr2_2:4941235-4941254 Msa0232660:CDS 45.0%
TTCCGTCGGTAAACTAGTTC+TGG + chr2_2:4941371-4941390 Msa0232660:intron 45.0%
!! GGTAAACTAGTTCTGGATCC+AGG + chr2_2:4941378-4941397 Msa0232660:intron 45.0%
ACAGTTGCATCAGGAGTTCA+TGG + chr2_2:4941441-4941460 Msa0232660:CDS 45.0%
TGATGCAGACAGTAGATCAG+TGG - chr2_2:4941894-4941913 None:intergenic 45.0%
!! ATGTGGAATAGTGGGCACAT+TGG + chr2_2:4942394-4942413 Msa0232660:CDS 45.0%
! ATTGGCTGGAGGATTTGTTC+TGG + chr2_2:4942412-4942431 Msa0232660:CDS 45.0%
CTGGGCGCACATAATTCTTA+TGG - chr2_2:4942542-4942561 None:intergenic 45.0%
CAGCTGTTTAGTGTGGAACT+GGG - chr2_2:4942560-4942579 None:intergenic 45.0%
ACAGCTGTTTAGTGTGGAAC+TGG - chr2_2:4942561-4942580 None:intergenic 45.0%
AGTTCCACACTAAACAGCTG+TGG + chr2_2:4942560-4942579 Msa0232660:intron 45.0%
AAGACCACAGCTGTTTAGTG+TGG - chr2_2:4942567-4942586 None:intergenic 45.0%
!! CTTGGGGCAGCATTTTGTTT+TGG + chr2_2:4942902-4942921 Msa0232660:CDS 45.0%
AGGTACTTTCCTTCTATGCG+AGG + chr2_2:4942999-4943018 Msa0232660:intron 45.0%
AGAGATCTTCCTCGCATAGA+AGG - chr2_2:4943011-4943030 None:intergenic 45.0%
GTAGACATGGCCATGGATAA+AGG - chr2_2:4943350-4943369 None:intergenic 45.0%
ATGAATGGCAACGGTAGACA+TGG - chr2_2:4943363-4943382 None:intergenic 45.0%
ACCGTTGCCATTCATCTCTT+TGG + chr2_2:4943368-4943387 Msa0232660:CDS 45.0%
TGTGTGTGTCTGTGAATGTG+GGG - chr2_2:4943456-4943475 None:intergenic 45.0%
GTGTGTGTGTCTGTGAATGT+GGG - chr2_2:4943457-4943476 None:intergenic 45.0%
CCTGTGTTTACTAGAACCGT+TGG - chr2_2:4943530-4943549 None:intergenic 45.0%
! CCAACGGTTCTAGTAAACAC+AGG + chr2_2:4943527-4943546 Msa0232660:intron 45.0%
ATTACTTGCAAAGCAGAGGG+AGG + chr2_2:4943915-4943934 Msa0232660:intron 45.0%
TTACTTGCAAAGCAGAGGGA+GGG + chr2_2:4943916-4943935 Msa0232660:intron 45.0%
ATAAACCATATTCCAGCCGC+TGG - chr2_2:4944069-4944088 None:intergenic 45.0%
GCGGCTGGAATATGGTTTAT+CGG + chr2_2:4944069-4944088 Msa0232660:CDS 45.0%
GAGGACCAATTTGAGAGGTT+AGG - chr2_2:4944216-4944235 None:intergenic 45.0%
CCAGCATGGATGGAAATAGG+AGG - chr2_2:4939005-4939024 None:intergenic 50.0%
CCTCCTATTTCCATCCATGC+TGG + chr2_2:4939002-4939021 Msa0232660:intron 50.0%
GGCTCAAGTGGTTCACATTC+GGG + chr2_2:4939447-4939466 Msa0232660:intron 50.0%
AATCTGGGTGGAGCAATCCT+TGG + chr2_2:4939484-4939503 Msa0232660:intron 50.0%
TCACGTGCTACACAACACCA+AGG - chr2_2:4939504-4939523 None:intergenic 50.0%
! TGGTTGCTCTGAGCCTAATG+TGG + chr2_2:4939640-4939659 Msa0232660:intron 50.0%
! TTTTCCTGTTGTGTGCAGGG+GGG + chr2_2:4939817-4939836 Msa0232660:intron 50.0%
GTCGCATGTAAGTGGTACTG+TGG + chr2_2:4940514-4940533 Msa0232660:intron 50.0%
! CTGTATAGGCTGGTTGGTGT+TGG + chr2_2:4940645-4940664 Msa0232660:intron 50.0%
AAAGCAAACCAGAGAAGCCG+GGG - chr2_2:4940718-4940737 None:intergenic 50.0%
GTACCTGACACAGTTGCATC+AGG + chr2_2:4941432-4941451 Msa0232660:CDS 50.0%
ACTCCTGATGCAACTGTGTC+AGG - chr2_2:4941438-4941457 None:intergenic 50.0%
!! GCGGTTTTCTTTTCAGGGTC+CGG + chr2_2:4943283-4943302 Msa0232660:intron 50.0%
ACCTGGAGAACTCCAACAAG+GGG - chr2_2:4943410-4943429 None:intergenic 50.0%
GACCTGGAGAACTCCAACAA+GGG - chr2_2:4943411-4943430 None:intergenic 50.0%
TGACCTGGAGAACTCCAACA+AGG - chr2_2:4943412-4943431 None:intergenic 50.0%
GGATCTGTAAAAGGCTGACC+TGG - chr2_2:4943427-4943446 None:intergenic 50.0%
GGTGTGTGTGTCTGTGAATG+TGG - chr2_2:4943458-4943477 None:intergenic 50.0%
! GTGGTGATGCGAGACTTTAG+AGG - chr2_2:4944235-4944254 None:intergenic 50.0%
!! AGCCAAGTGGTGGGTCACAA+GGG - chr2_2:4939675-4939694 None:intergenic 55.0%
!! TAGCCAAGTGGTGGGTCACA+AGG - chr2_2:4939676-4939695 None:intergenic 55.0%
AAATCCCCCCTGCACACAAC+AGG - chr2_2:4939824-4939843 None:intergenic 55.0%
!! TAGGCTGGTTGGTGTTGGTG+AGG + chr2_2:4940650-4940669 Msa0232660:intron 55.0%
!! GGAATAGTGGGCACATTGGC+TGG + chr2_2:4942398-4942417 Msa0232660:CDS 55.0%
!! ATAGTGGGCACATTGGCTGG+AGG + chr2_2:4942401-4942420 Msa0232660:CDS 55.0%
ACTCCAACAAGGGGTGAGGA+AGG - chr2_2:4943401-4943420 None:intergenic 55.0%
GAGAACTCCAACAAGGGGTG+AGG - chr2_2:4943405-4943424 None:intergenic 55.0%
ACCCCTTGTTGGAGTTCTCC+AGG + chr2_2:4943406-4943425 Msa0232660:CDS 55.0%
TGTGTCTGTGAATGTGGGGC+GGG - chr2_2:4943452-4943471 None:intergenic 55.0%
GTGTGTCTGTGAATGTGGGG+CGG - chr2_2:4943453-4943472 None:intergenic 55.0%
ACCATATTGTGTCCAGCGGC+TGG + chr2_2:4944054-4944073 Msa0232660:CDS 55.0%
TCCAGCCGCTGGACACAATA+TGG - chr2_2:4944058-4944077 None:intergenic 55.0%
TGTGTCCAGCGGCTGGAATA+TGG + chr2_2:4944061-4944080 Msa0232660:CDS 55.0%
TCCCCTTGTGACCCACCACT+TGG + chr2_2:4939670-4939689 Msa0232660:intron 60.0%
!! GCCAAGTGGTGGGTCACAAG+GGG - chr2_2:4939674-4939693 None:intergenic 60.0%
TGACAATGCCCCGGCTTCTC+TGG + chr2_2:4940707-4940726 Msa0232660:CDS 60.0%
GGCAACGGTAGACATGGCCA+TGG - chr2_2:4943357-4943376 None:intergenic 60.0%
GTGCCTTCCTCACCCCTTGT+TGG + chr2_2:4943395-4943414 Msa0232660:CDS 60.0%
TGTCTGTGAATGTGGGGCGG+GGG - chr2_2:4943450-4943469 None:intergenic 60.0%
GTGTCTGTGAATGTGGGGCG+GGG - chr2_2:4943451-4943470 None:intergenic 60.0%
GCAAAGCAGAGGGAGGGAAG+TGG + chr2_2:4943922-4943941 Msa0232660:intron 60.0%
AAGCAGAGGGAGGGAAGTGG+AGG + chr2_2:4943925-4943944 Msa0232660:intron 60.0%
GGGCGGGGGGGATCTGTAAA+AGG - chr2_2:4943436-4943455 None:intergenic 65.0%
TCTGTGAATGTGGGGCGGGG+GGG - chr2_2:4943448-4943467 None:intergenic 65.0%
GTCTGTGAATGTGGGGCGGG+GGG - chr2_2:4943449-4943468 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4938699 4944669 4938699 ID=Msa0232660;Name=Msa0232660
chr2_2 mRNA 4938699 4944669 4938699 ID=Msa0232660-mRNA-1;Parent=Msa0232660;Name=Msa0232660-mRNA-1;_AED=0.21;_eAED=0.21;_QI=179|1|1|1|0.86|0.87|16|169|510
chr2_2 exon 4938699 4938963 4938699 ID=Msa0232660-mRNA-1:exon:2142;Parent=Msa0232660-mRNA-1
chr2_2 exon 4939220 4939312 4939220 ID=Msa0232660-mRNA-1:exon:2143;Parent=Msa0232660-mRNA-1
chr2_2 exon 4939835 4939936 4939835 ID=Msa0232660-mRNA-1:exon:2144;Parent=Msa0232660-mRNA-1
chr2_2 exon 4940416 4940520 4940416 ID=Msa0232660-mRNA-1:exon:2145;Parent=Msa0232660-mRNA-1
chr2_2 exon 4940653 4940728 4940653 ID=Msa0232660-mRNA-1:exon:2146;Parent=Msa0232660-mRNA-1
chr2_2 exon 4941011 4941085 4941011 ID=Msa0232660-mRNA-1:exon:2147;Parent=Msa0232660-mRNA-1
chr2_2 exon 4941221 4941323 4941221 ID=Msa0232660-mRNA-1:exon:2148;Parent=Msa0232660-mRNA-1
chr2_2 exon 4941400 4941462 4941400 ID=Msa0232660-mRNA-1:exon:2149;Parent=Msa0232660-mRNA-1
chr2_2 exon 4941571 4941652 4941571 ID=Msa0232660-mRNA-1:exon:2150;Parent=Msa0232660-mRNA-1
chr2_2 exon 4941780 4941877 4941780 ID=Msa0232660-mRNA-1:exon:2151;Parent=Msa0232660-mRNA-1
chr2_2 exon 4942091 4942167 4942091 ID=Msa0232660-mRNA-1:exon:2152;Parent=Msa0232660-mRNA-1
chr2_2 exon 4942356 4942469 4942356 ID=Msa0232660-mRNA-1:exon:2153;Parent=Msa0232660-mRNA-1
chr2_2 exon 4942881 4943000 4942881 ID=Msa0232660-mRNA-1:exon:2154;Parent=Msa0232660-mRNA-1
chr2_2 exon 4943299 4943427 4943299 ID=Msa0232660-mRNA-1:exon:2155;Parent=Msa0232660-mRNA-1
chr2_2 exon 4944012 4944090 4944012 ID=Msa0232660-mRNA-1:exon:2156;Parent=Msa0232660-mRNA-1
chr2_2 exon 4944370 4944669 4944370 ID=Msa0232660-mRNA-1:exon:2157;Parent=Msa0232660-mRNA-1
chr2_2 five_prime_UTR 4938699 4938877 4938699 ID=Msa0232660-mRNA-1:five_prime_utr;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4938878 4938963 4938878 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4939220 4939312 4939220 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4939835 4939936 4939835 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4940416 4940520 4940416 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4940653 4940728 4940653 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4941011 4941085 4941011 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4941221 4941323 4941221 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4941400 4941462 4941400 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4941571 4941652 4941571 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4941780 4941877 4941780 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4942091 4942167 4942091 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4942356 4942469 4942356 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4942881 4943000 4942881 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4943299 4943427 4943299 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4944012 4944090 4944012 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 CDS 4944370 4944500 4944370 ID=Msa0232660-mRNA-1:cds;Parent=Msa0232660-mRNA-1
chr2_2 three_prime_UTR 4944501 4944669 4944501 ID=Msa0232660-mRNA-1:three_prime_utr;Parent=Msa0232660-mRNA-1
Gene Sequence

>Msa0232660

ATGCAAGTAACATCCAAAGTCTTGTTCATGGAACCACCCATAGTGTCATCCATGATTCCCACAACTTCATGGTTTACACCAAAGAGGTTACTTGGTATATTTTGTGTGATTAATTTGTTAAACTATTTGGATCAAGGAGCAATAGCTAGCAATGGTGTTAATGGAAGTACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTCGTGGCTTCTCCAATATTTGCCTCTCTAGCTCAGAGTGTAAATCCATTTAGACTTATAGGAGTTGGATTGTCAATGTGGACTCTTGCGACCTTCTTTTGTGGTTTTTCTTTCAATTTCTGGTCCATTTCTGTCTGTCGCATGCTGGTTGGTGTTGGTGAGGCTTCGTTTATAAGTTTAGCACCACCTTTCATTGATGACAATGCCCCGGCTTCTCTGAAAACAACATGGCTCGCAATGTTTTACATGTGTATACCATCTGGATATGCACTTGGCTATGTTTATGGTGGTTTGATTGGAAGTAATTTTGGTTGGCGTTATGCATTCTGGGTAGAGTCTATATTGATGCTTCCATTTGCTATTTCAGGATTTTTAATGAAGCCTTTACAGTTGAAAGGTTTTGTTCCTGTTGATTTGATAAAGGCACAAGTACCTGACACAGTTGCATCAGGAGTTCATGTCACGAACGCTTCTAACGGCAGAGATGAGTCATTGTCTTTTAAGGAAGAATTCAGAGATAAAAGCTCAAATGACCAATCCAAGTCAAAATCTGCAACGAAAATGCTTGATCAGTTCTCAAGATTTTTTATTGATATGAAAGCGCTCCTGCTTGATAATGTTTATATTATCAATGTTCTAGGTCACATAGCGTACAACTTTGTCTTAGGTGCTTACTCATATTGGGGTCCCAAAGTTGTCTACAATATTTATAACATGACTGATTCAGATTTGGTATTTGGAGGAATTACAATTGTATGTGGAATAGTGGGCACATTGGCTGGAGGATTTGTTCTGGATTATATGAGTAACACCTTATCAAATGCATTTAAGCTTCTCTCAGTGACAACATTTCTTGGGGCAGCATTTTGTTTTGGAGCCTTCTTATGCAGAAATGTGAATGGCTTTCTTGTTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGGGTCCGGTGAATTTTGTATGTCTTCATTGTGTTAAACCAAGTTTGAGACCTTTATCCATGGCCATGTCTACCGTTGCCATTCATCTCTTTGGAGATGTGCCTTCCTCACCCCTTGTTGGAGTTCTCCAGGATAGCATTAACAACTGGAGAACAACTGCATTGATCCTAACAACCATATTGTGTCCAGCGGCTGGAATATGGTTTATCGGAATATTTGTGCATAGTGTGGATAAATTTGAAGATGACAGTGAACAACAAGTGTGCAATATACCGTTACTTCAAGAGAAGACCGAAGAAACATCAATATCTCATGCACAATCTCAATCTCATGAATGTTGA

Protein sequence

>Msa0232660

MQVTSKVLFMEPPIVSSMIPTTSWFTPKRLLGIFCVINLLNYLDQGAIASNGVNGSTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAQSVNPFRLIGVGLSMWTLATFFCGFSFNFWSISVCRMLVGVGEASFISLAPPFIDDNAPASLKTTWLAMFYMCIPSGYALGYVYGGLIGSNFGWRYAFWVESILMLPFAISGFLMKPLQLKGFVPVDLIKAQVPDTVASGVHVTNASNGRDESLSFKEEFRDKSSNDQSKSKSATKMLDQFSRFFIDMKALLLDNVYIINVLGHIAYNFVLGAYSYWGPKVVYNIYNMTDSDLVFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSVTTFLGAAFCFGAFLCRNVNGFLVLFSIGELLVFATQGPVNFVCLHCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGVLQDSINNWRTTALILTTILCPAAGIWFIGIFVHSVDKFEDDSEQQVCNIPLLQEKTEETSISHAQSQSHEC*