AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099090 MtrunA17_Chr1g0151351 97.566 452 7 1 1 448 1 452 0.0 922
Msa0099090 MtrunA17_Chr2g0330171 48.984 492 170 17 11 448 1 465 1.55e-133 392
Msa0099090 MtrunA17_Chr8g0342421 47.129 505 187 14 1 433 1 497 3.43e-130 386
Msa0099090 MtrunA17_Chr1g0185121 54.790 334 112 7 11 305 6 339 1.58e-117 351
Msa0099090 MtrunA17_Chr8g0373541 76.804 194 43 2 10 203 3 194 7.57e-109 331
Msa0099090 MtrunA17_Chr4g0040571 78.142 183 39 1 32 214 30 211 1.60e-106 325
Msa0099090 MtrunA17_Chr1g0191991 58.586 297 85 8 35 295 57 351 4.64e-106 324
Msa0099090 MtrunA17_Chr7g0263941 57.895 304 106 8 16 301 9 308 1.11e-105 319
Msa0099090 MtrunA17_Chr4g0029521 73.711 194 50 1 16 208 12 205 3.15e-105 321
Msa0099090 MtrunA17_Chr2g0326381 45.038 393 161 10 40 420 31 380 1.29e-102 311
Msa0099090 MtrunA17_Chr1g0181381 51.057 331 96 7 41 308 38 365 3.27e-102 313
Msa0099090 MtrunA17_Chr1g0199101 76.216 185 41 3 38 222 45 226 5.55e-102 314
Msa0099090 MtrunA17_Chr1g0162971 79.755 163 32 1 41 203 41 202 3.69e-100 306
Msa0099090 MtrunA17_Chr1g0163001 70.588 204 53 4 9 211 16 213 1.48e-99 307
Msa0099090 MtrunA17_Chr1g0210821 81.013 158 29 1 44 201 47 203 1.03e-97 304
Msa0099090 MtrunA17_Chr7g0268961 55.556 288 81 8 51 294 32 316 1.50e-96 298
Msa0099090 MtrunA17_Chr3g0141431 50.667 300 100 5 38 292 19 315 3.83e-94 290
Msa0099090 MtrunA17_Chr2g0324991 83.333 132 21 1 52 183 3 133 1.95e-79 243
Msa0099090 MtrunA17_Chr6g0479921 60.920 174 61 3 25 197 18 185 2.73e-73 238
Msa0099090 MtrunA17_Chr8g0375521 55.676 185 75 2 14 197 6 184 4.98e-72 233
Msa0099090 MtrunA17_Chr2g0320341 30.303 198 124 4 7 191 182 378 1.29e-22 99.4
Msa0099090 MtrunA17_Chr1g0200421 35.099 151 87 3 55 194 236 386 1.40e-22 100
Msa0099090 MtrunA17_Chr5g0422571 33.498 203 115 9 5 196 55 248 2.02e-22 97.1
Msa0099090 MtrunA17_Chr3g0123941 35.762 151 90 3 51 194 118 268 2.17e-22 97.8
Msa0099090 MtrunA17_Chr7g0258011 34.146 164 89 6 62 208 181 342 1.29e-20 92.8
Msa0099090 MtrunA17_Chr8g0352011 34.146 164 89 6 62 208 171 332 1.54e-20 92.4
Msa0099090 MtrunA17_Chr1g0173841 35.915 142 80 5 62 194 220 359 1.69e-19 90.1
Msa0099090 MtrunA17_Chr1g0198651 34.161 161 91 6 47 194 91 249 2.27e-19 88.2
Msa0099090 MtrunA17_Chr4g0053341 33.333 159 94 6 45 194 63 218 3.26e-19 86.3
Msa0099090 MtrunA17_Chr4g0026521 35.915 142 80 5 62 194 123 262 7.57e-19 86.7
Msa0099090 MtrunA17_Chr2g0328921 35.211 142 81 5 62 194 143 282 8.23e-19 87.0
Msa0099090 MtrunA17_Chr8g0382121 35.135 148 86 5 54 191 109 256 1.23e-18 86.3
Msa0099090 MtrunA17_Chr2g0321291 36.170 141 81 4 62 194 138 277 1.98e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099090 AT1G55110.3 59.752 323 93 7 7 294 17 337 2.17e-120 359
Msa0099090 AT1G55110.1 59.752 323 93 7 7 294 17 337 2.17e-120 359
Msa0099090 AT1G55110.2 59.752 323 93 7 7 294 17 337 2.17e-120 359
Msa0099090 AT5G66730.1 75.000 196 41 3 10 203 4 193 6.08e-106 323
Msa0099090 AT3G50700.1 72.864 199 50 2 5 203 1 195 2.37e-105 320
Msa0099090 AT3G13810.4 69.444 216 46 2 8 203 17 232 2.09e-104 320
Msa0099090 AT3G13810.1 69.444 216 46 2 8 203 17 232 2.09e-104 320
Msa0099090 AT3G13810.5 69.444 216 46 2 8 203 12 227 2.44e-104 320
Msa0099090 AT3G45260.2 79.532 171 35 0 40 210 38 208 2.36e-103 315
Msa0099090 AT3G45260.1 79.532 171 35 0 40 210 38 208 2.36e-103 315
Msa0099090 AT1G03840.1 77.841 176 38 1 38 213 38 212 1.56e-102 315
Msa0099090 AT5G03150.1 76.966 178 38 1 40 214 52 229 1.69e-102 315
Msa0099090 AT4G02670.1 47.230 379 146 10 41 399 53 397 3.14e-102 310
Msa0099090 AT4G02670.2 47.230 379 146 10 41 399 55 399 3.31e-102 310
Msa0099090 AT3G13810.6 69.014 213 46 2 11 203 1 213 5.01e-102 313
Msa0099090 AT2G02080.1 42.558 430 140 11 38 371 51 469 8.67e-102 313
Msa0099090 AT2G02080.4 42.558 430 140 11 38 371 51 469 8.67e-102 313
Msa0099090 AT2G02080.5 42.558 430 140 11 38 371 51 469 8.67e-102 313
Msa0099090 AT2G02080.3 42.558 430 140 11 38 371 51 469 8.67e-102 313
Msa0099090 AT5G44160.1 75.000 188 46 1 24 211 20 206 2.09e-101 311
Msa0099090 AT1G14580.1 74.566 173 43 1 31 203 43 214 5.45e-101 310
Msa0099090 AT1G14580.2 74.566 173 43 1 31 203 43 214 5.45e-101 310
Msa0099090 AT1G14580.3 74.566 173 43 1 31 203 57 228 1.27e-100 309
Msa0099090 AT1G03840.2 76.705 176 38 2 38 213 38 210 6.85e-99 305
Msa0099090 AT2G02070.2 80.368 163 31 1 41 203 52 213 1.38e-98 308
Msa0099090 AT2G02070.1 80.368 163 31 1 41 203 52 213 1.38e-98 308
Msa0099090 AT5G60470.2 74.405 168 43 0 41 208 44 211 1.24e-96 298
Msa0099090 AT5G60470.3 74.405 168 43 0 41 208 40 207 1.27e-96 298
Msa0099090 AT3G13810.2 64.414 222 53 2 8 203 12 233 7.87e-95 295
Msa0099090 AT5G44160.2 79.141 163 33 1 49 211 6 167 2.86e-94 291
Msa0099090 AT3G13810.3 83.553 152 25 0 52 203 68 219 3.20e-94 293
Msa0099090 AT5G60470.1 73.885 157 41 0 52 208 46 202 6.11e-89 278
Msa0099090 AT2G02080.6 41.439 403 129 11 65 371 1 392 3.98e-88 276
Msa0099090 AT2G02080.2 41.439 403 129 11 65 371 1 392 3.98e-88 276
Msa0099090 AT1G68130.1 63.529 170 56 2 29 197 34 198 6.83e-75 241
Msa0099090 AT2G01940.1 62.722 169 61 2 28 195 32 199 2.88e-73 237
Msa0099090 AT1G25250.3 57.895 190 71 4 10 197 9 191 4.26e-72 232
Msa0099090 AT2G01940.3 61.765 170 62 3 28 195 32 200 1.09e-69 228
Msa0099090 AT1G25250.1 63.758 149 52 2 51 197 20 168 4.20e-68 221
Msa0099090 AT1G68130.2 64.286 112 39 1 87 197 1 112 1.45e-47 167
Msa0099090 AT1G25250.2 61.947 113 41 2 87 197 1 113 3.82e-45 159
Msa0099090 AT2G01940.2 62.727 110 40 1 87 195 1 110 1.31e-44 159
Msa0099090 AT1G34370.3 34.810 158 90 4 50 194 14 171 1.04e-22 98.2
Msa0099090 AT1G34370.2 34.810 158 90 4 50 194 224 381 3.59e-22 99.4
Msa0099090 AT1G34370.1 34.810 158 90 4 50 194 224 381 3.59e-22 99.4
Msa0099090 AT5G22890.1 31.395 172 103 4 36 194 185 354 4.37e-22 97.8
Msa0099090 AT1G13290.1 34.395 157 92 5 62 208 93 248 8.08e-20 90.1
Msa0099090 AT3G57670.1 32.749 171 96 6 62 215 209 377 3.63e-19 89.4
Msa0099090 AT3G20880.1 31.902 163 93 6 62 208 248 408 8.74e-19 88.6
Msa0099090 AT1G51220.1 33.803 142 83 5 62 194 170 309 1.10e-18 87.4
Msa0099090 AT1G34790.1 32.571 175 105 5 28 194 107 276 2.22e-17 82.8
Msa0099090 AT1G08290.1 34.507 142 83 4 62 194 172 312 2.23e-17 83.6

Find 113 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTAGTGCCACAAATTT+TGG 0.055414 1_3:+5123125 None:intergenic
TCTCATTGTTTGGCTTCTTA+TGG 0.135453 1_3:-5121955 Msa0099090:CDS
CTGCTTAGTGTGGAAATTTC+AGG 0.165111 1_3:+5124590 None:intergenic
GAGGAACAATATTCCCATTT+TGG 0.167286 1_3:-5121772 Msa0099090:CDS
AACCATGGCTTTGATGAAAT+TGG 0.176098 1_3:+5122292 None:intergenic
TCATGATAACAAGCCAATTT+TGG 0.179044 1_3:-5124719 Msa0099090:five_prime_UTR
CTCATTGTTTGGCTTCTTAT+GGG 0.236544 1_3:-5121954 Msa0099090:CDS
AGTAACCATGATGGAATTTC+TGG 0.247409 1_3:+5122225 None:intergenic
CCTTGGTGAGGCTGATATTC+AGG 0.253757 1_3:-5121601 Msa0099090:exon
TTTGAGTTGAAAGAATTATT+AGG 0.263924 1_3:+5122153 None:intergenic
AGGAAGATTTCTCTTCCTTT+TGG 0.267985 1_3:+5124053 None:intergenic
CTATACACTTGCTATTAATT+AGG 0.271323 1_3:-5121499 Msa0099090:three_prime_UTR
AACTAGCTAAATCAAGAATT+TGG 0.284765 1_3:+5124550 None:intergenic
TATTGTGGATGAGAAATTAA+AGG 0.289703 1_3:+5124650 None:intergenic
CTAGTTGCTATAGCTAGATT+TGG 0.294047 1_3:-5124533 Msa0099090:five_prime_UTR
CCAAAACACAAAGCCAAAAT+TGG 0.297593 1_3:+5124706 None:intergenic
AGAGACTTGTTCAATATATC+TGG 0.300064 1_3:-5121667 Msa0099090:CDS
GGAAACAAAGTTGTAGGGTT+AGG 0.304016 1_3:+5122174 None:intergenic
TGTTTGTTGCTAAGAGAGTT+TGG 0.304831 1_3:+5123439 None:intergenic
ATGCAAACTCACGTGCCTTC+AGG 0.323277 1_3:-5122021 Msa0099090:CDS
GTTTGTTGCTAAGAGAGTTT+GGG 0.340724 1_3:+5123440 None:intergenic
CTCAAAAGTGTCTCTCATAT+TGG 0.346077 1_3:-5124244 Msa0099090:five_prime_UTR
TTCAATATATCTGGAATTGA+TGG 0.346876 1_3:-5121658 Msa0099090:CDS
ATACTCCATGATTTGGAGAT+TGG 0.358650 1_3:-5121559 Msa0099090:three_prime_UTR
ACCATGGCTTTGATGAAATT+GGG 0.358760 1_3:+5122293 None:intergenic
CTAATGCATACTCCATGATT+TGG 0.361070 1_3:-5121566 Msa0099090:three_prime_UTR
ATGGCTTCACGTGAAGAAAT+AGG 0.371641 1_3:-5121991 Msa0099090:CDS
TTATTAGGAAACAAAGTTGT+AGG 0.372201 1_3:+5122168 None:intergenic
AGGGCACTTGGTGACCTAAC+TGG 0.384172 1_3:-5123246 Msa0099090:CDS
GAAACAAAGTTGTAGGGTTA+GGG 0.390096 1_3:+5122175 None:intergenic
AAAGCTAGCACTTGTGCCTC+AGG 0.393473 1_3:+5123468 None:intergenic
CTGCTTACTTGAACTTGAAA+AGG 0.402514 1_3:+5124443 None:intergenic
AGTGCTTCTTGATTCCAGTT+AGG 0.403331 1_3:+5123232 None:intergenic
CAAGAATTGTTTAGATCTTA+CGG 0.403583 1_3:+5124298 None:intergenic
ATTGTGGATGAGAAATTAAA+GGG 0.406146 1_3:+5124651 None:intergenic
TAAAGGGTTGCTTTGAAAGC+TGG 0.410501 1_3:+5124667 None:intergenic
GATAATGGTTCAAATGGGTT+GGG 0.421089 1_3:+5122202 None:intergenic
TGGGAGTGAGAAGAGAATAG+AGG 0.421836 1_3:+5122312 None:intergenic
ACTTTGAAAGAAATCCATCT+TGG 0.435198 1_3:-5124499 Msa0099090:five_prime_UTR
TGATAATGGTTCAAATGGGT+TGG 0.442086 1_3:+5122201 None:intergenic
GGGAGTGAGAAGAGAATAGA+GGG 0.447356 1_3:+5122313 None:intergenic
GCTACTTGCACTAAGTATAT+CGG 0.447719 1_3:+5124331 None:intergenic
GCACGTGAGTTTGCATTAAG+TGG 0.454018 1_3:+5122028 None:intergenic
TCTTGTCATCTCATCATCAT+TGG 0.457129 1_3:+5121720 None:intergenic
GCTTCTTCAGCAACCAAGAA+TGG 0.463212 1_3:-5124105 Msa0099090:CDS
CTTTGAAAGAAATCCATCTT+GGG 0.466963 1_3:-5124498 Msa0099090:five_prime_UTR
GTGTTCACCATGACCCTTCA+AGG 0.470912 1_3:-5123266 Msa0099090:CDS
GAGAGATAATAATAACTTTG+AGG 0.471825 1_3:-5121791 Msa0099090:CDS
CTAATATTGATTAATAGAAA+AGG 0.471967 1_3:+5121437 None:intergenic
AGTAACCAATCTCCAAATCA+TGG 0.476476 1_3:+5121554 None:intergenic
CGTGAAGAAATAGGAACTAC+TGG 0.478841 1_3:-5121982 Msa0099090:CDS
AAAAGGAAGAGAAATCTTCC+TGG 0.478919 1_3:-5124051 Msa0099090:CDS
TGCATTAAGTGGGGTCTACA+AGG 0.485099 1_3:+5122039 None:intergenic
TATTAGGAAACAAAGTTGTA+GGG 0.486072 1_3:+5122169 None:intergenic
CTGAAATTTCCACACTAAGC+AGG 0.487400 1_3:-5124589 Msa0099090:five_prime_UTR
AAAGCTCATTCCAAAATTTG+TGG 0.492046 1_3:-5123135 Msa0099090:CDS
AAAAGCAACATTATAAAGAA+TGG 0.495322 1_3:-5121748 Msa0099090:CDS
AAACTCTCTTAGCAACAAAC+AGG 0.496554 1_3:-5123437 Msa0099090:CDS
GTAAGCAAAATCAAACTCCT+TGG 0.497139 1_3:-5121618 Msa0099090:CDS
AGATTCTTACCTTGAGAAGA+GGG 0.498855 1_3:+5123083 None:intergenic
GGAAGCACGGTGAGAAGAAG+TGG 0.500086 1_3:-5123203 Msa0099090:CDS
GGTTGCTTTGAAAGCTGGTA+TGG 0.504025 1_3:+5124672 None:intergenic
GGTAAGAGAGAAGAATATTG+TGG 0.504225 1_3:+5124635 None:intergenic
CACGTGAGTTTGCATTAAGT+GGG 0.505578 1_3:+5122029 None:intergenic
ATCTAGAACCACAAGCCAAA+AGG 0.506626 1_3:-5124068 Msa0099090:CDS
AACTCACGTGCCTTCAGGAA+TGG 0.523050 1_3:-5122016 Msa0099090:CDS
AGAGATGATGAAAGGTTTGT+CGG 0.525812 1_3:-5124175 Msa0099090:exon
TGGTGAACACATGTTGGCTC+TGG 0.526908 1_3:+5123279 None:intergenic
CATGACCCTTCAAGGGCACT+TGG 0.527782 1_3:-5123258 Msa0099090:CDS
TCCCAATTTCATCAAAGCCA+TGG 0.529104 1_3:-5122294 Msa0099090:CDS
GTTATGCAGTTCAGTCGGAT+TGG 0.535164 1_3:-5123158 Msa0099090:CDS
CGTGCCTTCAGGAATGGCTA+TGG 0.546913 1_3:-5122010 Msa0099090:CDS
TGCTTACCATGCAAACTCAA+AGG 0.555451 1_3:+5121634 None:intergenic
AGGTCACCAAGTGCCCTTGA+AGG 0.557241 1_3:+5123252 None:intergenic
TGAGTGATAGAGATGATGAA+AGG 0.561148 1_3:-5124183 Msa0099090:exon
TAAGACCAGAAATTCCATCA+TGG 0.562745 1_3:-5122230 Msa0099090:CDS
TAAACGTTATGCAGTTCAGT+CGG 0.567043 1_3:-5123163 Msa0099090:CDS
AATTGTTTAGATCTTACGGC+AGG 0.567214 1_3:+5124302 None:intergenic
AAGATTCTTACCTTGAGAAG+AGG 0.572213 1_3:+5123082 None:intergenic
GATGGTCCTTTGAGTTTGCA+TGG 0.572532 1_3:-5121640 Msa0099090:CDS
CAAGTGCCCTTGAAGGGTCA+TGG 0.580343 1_3:+5123259 None:intergenic
ATTTGTTTGTGAGTGTGTGA+AGG 0.584762 1_3:+5124613 None:intergenic
TTACTGCTGCTATGAGCATG+AGG 0.586599 1_3:-5121831 Msa0099090:CDS
GGTCAATTTCCTGCTTAGTG+TGG 0.586633 1_3:+5124580 None:intergenic
GTGATAGTGGTTGAAAACCA+TGG 0.587939 1_3:+5122277 None:intergenic
TTTGTTGCTAAGAGAGTTTG+GGG 0.590009 1_3:+5123441 None:intergenic
AGAGAGGACATAATTTGCCA+TGG 0.596190 1_3:-5123356 Msa0099090:CDS
ATTTGTGAGATTTGTAACAA+AGG 0.598660 1_3:-5123411 Msa0099090:CDS
GGTCACCAAGTGCCCTTGAA+GGG 0.601914 1_3:+5123253 None:intergenic
AAGCTAGCACTTGTGCCTCA+GGG 0.605138 1_3:+5123469 None:intergenic
CTGTGATAAAACATCACAGA+AGG 0.605312 1_3:+5122362 None:intergenic
TAGATCTTACGGCAGGCTAG+AGG 0.610052 1_3:+5124309 None:intergenic
TTTGTTTGTGAGTGTGTGAA+GGG 0.612610 1_3:+5124614 None:intergenic
TGATGTGATGTATGGTAGTG+AGG 0.613764 1_3:-5121878 Msa0099090:CDS
AATCTTCAGCTTCATAAGAG+AGG 0.614070 1_3:-5123372 Msa0099090:CDS
TGTTCACCATGACCCTTCAA+GGG 0.614167 1_3:-5123265 Msa0099090:CDS
GATGTGATGTATGGTAGTGA+GGG 0.620627 1_3:-5121877 Msa0099090:CDS
AGCAACATTATAAAGAATGG+TGG 0.626398 1_3:-5121745 Msa0099090:CDS
CAAAATCAAACTCCTTGGTG+AGG 0.632534 1_3:-5121613 Msa0099090:exon
AGAAATCTTCCTGGCCACCC+AGG 0.633086 1_3:-5124042 Msa0099090:intron
TGGGTTGGGAGTAACCATGA+TGG 0.633109 1_3:+5122216 None:intergenic
ACTGTGGAACCCTCTTCTCA+AGG 0.634375 1_3:-5123092 Msa0099090:intron
GAAGCCATAGCCATTCCTGA+AGG 0.639906 1_3:+5122006 None:intergenic
AAAGAGTATAAGTGTGACTG+TGG 0.643514 1_3:-5123108 Msa0099090:CDS
TACTGCTGCTATGAGCATGA+GGG 0.646189 1_3:-5121830 Msa0099090:CDS
AAAGCAGTGGCAGACATGTG+AGG 0.650724 1_3:+5122111 None:intergenic
GATGATGAAAGGTTTGTCGG+TGG 0.652402 1_3:-5124172 Msa0099090:CDS
AAGGTGAATAGATCCCAAGA+TGG 0.655417 1_3:+5124485 None:intergenic
AATCAAGAATTTGGTAAACA+CGG 0.658414 1_3:+5124559 None:intergenic
ACGTGAGTTTGCATTAAGTG+GGG 0.666291 1_3:+5122030 None:intergenic
CCTGAATATCAGCCTCACCA+AGG 0.685282 1_3:+5121601 None:intergenic
GGGTCATGGTGAACACATGT+TGG 0.693614 1_3:+5123273 None:intergenic
ACTGCTGCTATGAGCATGAG+GGG 0.697079 1_3:-5121829 Msa0099090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATCTTATTAATTTAAATT+TGG - chr1_3:5123159-5123178 Msa0099090:CDS 10.0%
!! CAAGAAAATAATATTACAAT+TGG + chr1_3:5122222-5122241 None:intergenic 15.0%
!! TATATACCAATTTATATTAC+TGG + chr1_3:5122261-5122280 None:intergenic 15.0%
!!! TAGCCTATTAATTTTTTTTT+AGG - chr1_3:5122646-5122665 Msa0099090:intron 15.0%
!!! AGCCTATTAATTTTTTTTTA+GGG - chr1_3:5122647-5122666 Msa0099090:intron 15.0%
!! TTCCCTAAAAAAAAATTAAT+AGG + chr1_3:5122652-5122671 None:intergenic 15.0%
!! ATTTAAAAAAGATTACCTTA+TGG + chr1_3:5123346-5123365 None:intergenic 15.0%
!! TTGAAAAAATATATGCATTA+TGG + chr1_3:5123391-5123410 None:intergenic 15.0%
!! AAATACAAAGAAATTAATCA+AGG - chr1_3:5123508-5123527 Msa0099090:intron 15.0%
!! AATACAAAGAAATTAATCAA+GGG - chr1_3:5123509-5123528 Msa0099090:intron 15.0%
!!! TACTATTAGTTTAAATTATG+AGG + chr1_3:5123543-5123562 None:intergenic 15.0%
!!! TAATAAAATTTTTCGCTTAT+TGG + chr1_3:5123703-5123722 None:intergenic 15.0%
!! AGTAATTTAAATTTAAAGGA+AGG + chr1_3:5123759-5123778 None:intergenic 15.0%
!! CAAGAGTAATTTAAATTTAA+AGG + chr1_3:5123763-5123782 None:intergenic 15.0%
!!! CTAATATTGATTAATAGAAA+AGG + chr1_3:5124791-5124810 None:intergenic 15.0%
!!! TATTATTTTCTTGTTCATGA+AGG - chr1_3:5122229-5122248 Msa0099090:CDS 20.0%
!! TATAAATTGGTATATACTGA+AGG - chr1_3:5122265-5122284 Msa0099090:CDS 20.0%
!!! GTTTTACAATTGAATATTTG+TGG - chr1_3:5122700-5122719 Msa0099090:intron 20.0%
!!! TTTTTTTTGTTAATGCAATG+TGG - chr1_3:5123319-5123338 Msa0099090:CDS 20.0%
!!! TTTTAAATAATGTACTTTGC+AGG - chr1_3:5123358-5123377 Msa0099090:CDS 20.0%
!!! TTGTATTTTTTCCTTGTTTA+CGG + chr1_3:5123496-5123515 None:intergenic 20.0%
!! ATACAAAGAAATTAATCAAG+GGG - chr1_3:5123510-5123529 Msa0099090:intron 20.0%
!! TAATATATCTAGAGACTAAT+CGG + chr1_3:5123651-5123670 None:intergenic 20.0%
!!! AATTTATTTTTGATTGCAGA+AGG - chr1_3:5123818-5123837 Msa0099090:intron 20.0%
!!! ATTTATTTTTGATTGCAGAA+GGG - chr1_3:5123819-5123838 Msa0099090:intron 20.0%
!!! TTTGAGTTGAAAGAATTATT+AGG + chr1_3:5124075-5124094 None:intergenic 20.0%
!! AAAAGCAACATTATAAAGAA+TGG - chr1_3:5124477-5124496 Msa0099090:five_prime_UTR 20.0%
! ATTGTGGATGAGAAATTAAA+GGG + chr1_3:5121577-5121596 None:intergenic 25.0%
! TATTGTGGATGAGAAATTAA+AGG + chr1_3:5121578-5121597 None:intergenic 25.0%
! AATCAAGAATTTGGTAAACA+CGG + chr1_3:5121669-5121688 None:intergenic 25.0%
! AACTAGCTAAATCAAGAATT+TGG + chr1_3:5121678-5121697 None:intergenic 25.0%
! AAGAAAAAGCTGAGAAATTA+AGG + chr1_3:5121762-5121781 None:intergenic 25.0%
! CAAGAATTGTTTAGATCTTA+CGG + chr1_3:5121930-5121949 None:intergenic 25.0%
! AGTAGTCCAGTAATATAAAT+TGG - chr1_3:5122252-5122271 Msa0099090:CDS 25.0%
! ACTGAAGGAGTTATATATAT+AGG - chr1_3:5122280-5122299 Msa0099090:CDS 25.0%
!! TTATATATATAGGAGGTGTA+GGG - chr1_3:5122290-5122309 Msa0099090:CDS 25.0%
!!! TGTTAGTAGTTAGTTTGTTA+GGG + chr1_3:5122347-5122366 None:intergenic 25.0%
! TTACCTATCAAAAAAAGACA+GGG - chr1_3:5122368-5122387 Msa0099090:CDS 25.0%
! AAAAAAAGACAGGGTTTAAT+TGG - chr1_3:5122377-5122396 Msa0099090:CDS 25.0%
! GGCTGAAAATATTGTTAATT+TGG - chr1_3:5122721-5122740 Msa0099090:intron 25.0%
! ATTTGTGAGATTTGTAACAA+AGG - chr1_3:5122814-5122833 Msa0099090:intron 25.0%
! GATACAAACAAACTAAATCA+TGG - chr1_3:5123190-5123209 Msa0099090:CDS 25.0%
!!! TGTATTTTTTCCTTGTTTAC+GGG + chr1_3:5123495-5123514 None:intergenic 25.0%
! AGTAAATGTTTAGTATGAGT+CGG - chr1_3:5123559-5123578 Msa0099090:intron 25.0%
!!! GTTTTGATAATGGTTCAAAT+GGG + chr1_3:5124031-5124050 None:intergenic 25.0%
! TATTAGGAAACAAAGTTGTA+GGG + chr1_3:5124059-5124078 None:intergenic 25.0%
! TTATTAGGAAACAAAGTTGT+AGG + chr1_3:5124060-5124079 None:intergenic 25.0%
! GAGAGATAATAATAACTTTG+AGG - chr1_3:5124434-5124453 Msa0099090:five_prime_UTR 25.0%
!!! AATGTTGCTTTTACCAAAAT+GGG + chr1_3:5124469-5124488 None:intergenic 25.0%
!!! TAATGTTGCTTTTACCAAAA+TGG + chr1_3:5124470-5124489 None:intergenic 25.0%
!! TTCAATATATCTGGAATTGA+TGG - chr1_3:5124567-5124586 Msa0099090:five_prime_UTR 25.0%
!!! CTATACACTTGCTATTAATT+AGG - chr1_3:5124726-5124745 Msa0099090:five_prime_UTR 25.0%
GAGAGAAAGAAAAAGAAAAG+AGG - chr1_3:5121464-5121483 Msa0099090:three_prime_UTR 30.0%
! TCATGATAACAAGCCAATTT+TGG - chr1_3:5121506-5121525 Msa0099090:three_prime_UTR 30.0%
! ACTTTGAAAGAAATCCATCT+TGG - chr1_3:5121726-5121745 Msa0099090:CDS 30.0%
! CTTTGAAAGAAATCCATCTT+GGG - chr1_3:5121727-5121746 Msa0099090:CDS 30.0%
TTCTGAGTGTAAAAAAAGAG+AGG + chr1_3:5121808-5121827 None:intergenic 30.0%
! TAAACAATTCTTGCCTTTTC+CGG - chr1_3:5121937-5121956 Msa0099090:CDS 30.0%
!!! AGATCAACTTCTTTTTTCAC+CGG + chr1_3:5121959-5121978 None:intergenic 30.0%
! TTGGTGTGATTTTATTACCT+GGG + chr1_3:5122203-5122222 None:intergenic 30.0%
! ATTGGTGTGATTTTATTACC+TGG + chr1_3:5122204-5122223 None:intergenic 30.0%
GAAGGAGTTATATATATAGG+AGG - chr1_3:5122283-5122302 Msa0099090:CDS 30.0%
! GTTATATATATAGGAGGTGT+AGG - chr1_3:5122289-5122308 Msa0099090:CDS 30.0%
!! GTGTTAGTAGTTAGTTTGTT+AGG + chr1_3:5122348-5122367 None:intergenic 30.0%
CTTACCTATCAAAAAAAGAC+AGG - chr1_3:5122367-5122386 Msa0099090:CDS 30.0%
!!! AAACCCTGTCTTTTTTTGAT+AGG + chr1_3:5122374-5122393 None:intergenic 30.0%
TTGTCATAACTCATATCTCT+TGG + chr1_3:5122418-5122437 None:intergenic 30.0%
CAATATATCACCTAAATCCA+TGG + chr1_3:5122441-5122460 None:intergenic 30.0%
TGGATTTAGGTGATATATTG+TGG - chr1_3:5122441-5122460 Msa0099090:intron 30.0%
!! TTTCTTTTCTTTAGCTTCCA+TGG + chr1_3:5122889-5122908 None:intergenic 30.0%
AAAGCTCATTCCAAAATTTG+TGG - chr1_3:5123090-5123109 Msa0099090:intron 30.0%
AACAAATATTGCATGCTCTT+TGG + chr1_3:5123614-5123633 None:intergenic 30.0%
TCAACCACTATCACTAAAAA+AGG - chr1_3:5123957-5123976 Msa0099090:intron 30.0%
!!! TGTTCCTTTTTTAGTGATAG+TGG + chr1_3:5123964-5123983 None:intergenic 30.0%
!!! GGTTTTGATAATGGTTCAAA+TGG + chr1_3:5124032-5124051 None:intergenic 30.0%
!!! TACTGGTTTTTCTCATTGTT+TGG - chr1_3:5124260-5124279 Msa0099090:five_prime_UTR 30.0%
AGCAACATTATAAAGAATGG+TGG - chr1_3:5124480-5124499 Msa0099090:five_prime_UTR 30.0%
!!! ACAAGAGATTTTTTGAGTCT+TGG - chr1_3:5124522-5124541 Msa0099090:five_prime_UTR 30.0%
! AGAGACTTGTTCAATATATC+TGG - chr1_3:5124558-5124577 Msa0099090:five_prime_UTR 30.0%
!!! GGTTACTTTTTCTCATAAGA+AGG - chr1_3:5124687-5124706 Msa0099090:five_prime_UTR 30.0%
CCAAAACACAAAGCCAAAAT+TGG + chr1_3:5121522-5121541 None:intergenic 35.0%
!!! CCAATTTTGGCTTTGTGTTT+TGG - chr1_3:5121519-5121538 Msa0099090:three_prime_UTR 35.0%
GGTAAGAGAGAAGAATATTG+TGG + chr1_3:5121593-5121612 None:intergenic 35.0%
TTTGTTTGTGAGTGTGTGAA+GGG + chr1_3:5121614-5121633 None:intergenic 35.0%
ATTTGTTTGTGAGTGTGTGA+AGG + chr1_3:5121615-5121634 None:intergenic 35.0%
CTAGTTGCTATAGCTAGATT+TGG - chr1_3:5121692-5121711 Msa0099090:CDS 35.0%
CTGCTTACTTGAACTTGAAA+AGG + chr1_3:5121785-5121804 None:intergenic 35.0%
GCTACTTGCACTAAGTATAT+CGG + chr1_3:5121897-5121916 None:intergenic 35.0%
AATTGTTTAGATCTTACGGC+AGG + chr1_3:5121926-5121945 None:intergenic 35.0%
!!! ACTTCTTTTTTCACCGGAAA+AGG + chr1_3:5121953-5121972 None:intergenic 35.0%
!! CTCAAAAGTGTCTCTCATAT+TGG - chr1_3:5121981-5122000 Msa0099090:CDS 35.0%
TGAGTGATAGAGATGATGAA+AGG - chr1_3:5122042-5122061 Msa0099090:CDS 35.0%
AGAGATGATGAAAGGTTTGT+CGG - chr1_3:5122050-5122069 Msa0099090:CDS 35.0%
! TGTTGAAGCTTTTCCATTCT+TGG + chr1_3:5122136-5122155 None:intergenic 35.0%
! AGGAAGATTTCTCTTCCTTT+TGG + chr1_3:5122175-5122194 None:intergenic 35.0%
AAAAGGAAGAGAAATCTTCC+TGG - chr1_3:5122174-5122193 Msa0099090:CDS 35.0%
!! TAGTTAGTTTGTTAGGGAAG+TGG + chr1_3:5122341-5122360 None:intergenic 35.0%
GATATGAGTTATGACAACCA+TGG - chr1_3:5122421-5122440 Msa0099090:intron 35.0%
GTTATGACAACCATGGATTT+AGG - chr1_3:5122428-5122447 Msa0099090:intron 35.0%
CAAAGAAAAGTAGTAGCCAA+GGG + chr1_3:5122589-5122608 None:intergenic 35.0%
ACAAAGAAAAGTAGTAGCCA+AGG + chr1_3:5122590-5122609 None:intergenic 35.0%
TTTGTTGCTAAGAGAGTTTG+GGG + chr1_3:5122787-5122806 None:intergenic 35.0%
! GTTTGTTGCTAAGAGAGTTT+GGG + chr1_3:5122788-5122807 None:intergenic 35.0%
! TGTTTGTTGCTAAGAGAGTT+TGG + chr1_3:5122789-5122808 None:intergenic 35.0%
AAACTCTCTTAGCAACAAAC+AGG - chr1_3:5122788-5122807 Msa0099090:intron 35.0%
AATCTTCAGCTTCATAAGAG+AGG - chr1_3:5122853-5122872 Msa0099090:intron 35.0%
!!! GAATCAAGAAGCACTTTTTC+AGG - chr1_3:5123001-5123020 Msa0099090:intron 35.0%
TAAACGTTATGCAGTTCAGT+CGG - chr1_3:5123062-5123081 Msa0099090:intron 35.0%
! CTCTTTAGTGCCACAAATTT+TGG + chr1_3:5123103-5123122 None:intergenic 35.0%
! AAAGAGTATAAGTGTGACTG+TGG - chr1_3:5123117-5123136 Msa0099090:CDS 35.0%
AGATTCTTACCTTGAGAAGA+GGG + chr1_3:5123145-5123164 None:intergenic 35.0%
AAGATTCTTACCTTGAGAAG+AGG + chr1_3:5123146-5123165 None:intergenic 35.0%
! GTCTCTCTCTTATCTCTTTT+TGG + chr1_3:5123244-5123263 None:intergenic 35.0%
TTAATGCAATGTGGTCCATA+AGG - chr1_3:5123328-5123347 Msa0099090:CDS 35.0%
TTCGCTTATTGGAGATGAAT+TGG + chr1_3:5123692-5123711 None:intergenic 35.0%
CTGTGATAAAACATCACAGA+AGG + chr1_3:5123866-5123885 None:intergenic 35.0%
! CTTCTGTGATGTTTTATCAC+AGG - chr1_3:5123864-5123883 Msa0099090:intron 35.0%
!! ACCATGGCTTTGATGAAATT+GGG + chr1_3:5123935-5123954 None:intergenic 35.0%
!! AACCATGGCTTTGATGAAAT+TGG + chr1_3:5123936-5123955 None:intergenic 35.0%
TAAGACCAGAAATTCCATCA+TGG - chr1_3:5123995-5124014 Msa0099090:intron 35.0%
! AGTAACCATGATGGAATTTC+TGG + chr1_3:5124003-5124022 None:intergenic 35.0%
! GATAATGGTTCAAATGGGTT+GGG + chr1_3:5124026-5124045 None:intergenic 35.0%
!! TGATAATGGTTCAAATGGGT+TGG + chr1_3:5124027-5124046 None:intergenic 35.0%
!! TAGGGTTAGGGTTTTGATAA+TGG + chr1_3:5124041-5124060 None:intergenic 35.0%
GAAACAAAGTTGTAGGGTTA+GGG + chr1_3:5124053-5124072 None:intergenic 35.0%
!! CTGCAAAAAGCATCACAAAT+AGG - chr1_3:5124138-5124157 Msa0099090:CDS 35.0%
! TCTCATTGTTTGGCTTCTTA+TGG - chr1_3:5124270-5124289 Msa0099090:five_prime_UTR 35.0%
! CTCATTGTTTGGCTTCTTAT+GGG - chr1_3:5124271-5124290 Msa0099090:five_prime_UTR 35.0%
! CTTTTGCATGATGTGATGTA+TGG - chr1_3:5124339-5124358 Msa0099090:five_prime_UTR 35.0%
! GAGGAACAATATTCCCATTT+TGG - chr1_3:5124453-5124472 Msa0099090:five_prime_UTR 35.0%
TCTTGTCATCTCATCATCAT+TGG + chr1_3:5124508-5124527 None:intergenic 35.0%
GTAAGCAAAATCAAACTCCT+TGG - chr1_3:5124607-5124626 Msa0099090:five_prime_UTR 35.0%
CTAATGCATACTCCATGATT+TGG - chr1_3:5124659-5124678 Msa0099090:five_prime_UTR 35.0%
! ATACTCCATGATTTGGAGAT+TGG - chr1_3:5124666-5124685 Msa0099090:five_prime_UTR 35.0%
AGTAACCAATCTCCAAATCA+TGG + chr1_3:5124674-5124693 None:intergenic 35.0%
!! TAAAGGGTTGCTTTGAAAGC+TGG + chr1_3:5121561-5121580 None:intergenic 40.0%
CTGCTTAGTGTGGAAATTTC+AGG + chr1_3:5121638-5121657 None:intergenic 40.0%
CTGAAATTTCCACACTAAGC+AGG - chr1_3:5121636-5121655 Msa0099090:CDS 40.0%
AAGGTGAATAGATCCCAAGA+TGG + chr1_3:5121743-5121762 None:intergenic 40.0%
! ATCTAGAACCACAAGCCAAA+AGG - chr1_3:5122157-5122176 Msa0099090:CDS 40.0%
!!! TTTCTCTTCCTTTTGGCTTG+TGG + chr1_3:5122168-5122187 None:intergenic 40.0%
! GTGTGATTTTATTACCTGGG+TGG + chr1_3:5122200-5122219 None:intergenic 40.0%
TCTGATGATCGTGTTAGAGT+CGG + chr1_3:5122483-5122502 None:intergenic 40.0%
ACACTGATGCATAGTCACAT+AGG - chr1_3:5122546-5122565 Msa0099090:intron 40.0%
! AGAGAGGACATAATTTGCCA+TGG - chr1_3:5122869-5122888 Msa0099090:intron 40.0%
AGTGCTTCTTGATTCCAGTT+AGG + chr1_3:5122996-5123015 None:intergenic 40.0%
!!! AAGCACTTTTTCAGGAAGCA+CGG - chr1_3:5123009-5123028 Msa0099090:intron 40.0%
GGTATGACATATAGTCGCTT+GGG + chr1_3:5123738-5123757 None:intergenic 40.0%
AGGTATGACATATAGTCGCT+TGG + chr1_3:5123739-5123758 None:intergenic 40.0%
TCCCAATTTCATCAAAGCCA+TGG - chr1_3:5123931-5123950 Msa0099090:intron 40.0%
!! GTGATAGTGGTTGAAAACCA+TGG + chr1_3:5123951-5123970 None:intergenic 40.0%
GGAAACAAAGTTGTAGGGTT+AGG + chr1_3:5124054-5124073 None:intergenic 40.0%
ACGTGAGTTTGCATTAAGTG+GGG + chr1_3:5124198-5124217 None:intergenic 40.0%
CACGTGAGTTTGCATTAAGT+GGG + chr1_3:5124199-5124218 None:intergenic 40.0%
ATGGCTTCACGTGAAGAAAT+AGG - chr1_3:5124234-5124253 Msa0099090:five_prime_UTR 40.0%
CGTGAAGAAATAGGAACTAC+TGG - chr1_3:5124243-5124262 Msa0099090:five_prime_UTR 40.0%
! TGATGTGATGTATGGTAGTG+AGG - chr1_3:5124347-5124366 Msa0099090:five_prime_UTR 40.0%
! GATGTGATGTATGGTAGTGA+GGG - chr1_3:5124348-5124367 Msa0099090:five_prime_UTR 40.0%
TGCTTACCATGCAAACTCAA+AGG + chr1_3:5124594-5124613 None:intergenic 40.0%
CAAAATCAAACTCCTTGGTG+AGG - chr1_3:5124612-5124631 Msa0099090:five_prime_UTR 40.0%
!! GGTTGCTTTGAAAGCTGGTA+TGG + chr1_3:5121556-5121575 None:intergenic 45.0%
GGTCAATTTCCTGCTTAGTG+TGG + chr1_3:5121648-5121667 None:intergenic 45.0%
GATGATGAAAGGTTTGTCGG+TGG - chr1_3:5122053-5122072 Msa0099090:CDS 45.0%
GCTTCTTCAGCAACCAAGAA+TGG - chr1_3:5122120-5122139 Msa0099090:CDS 45.0%
! ATTTTATTACCTGGGTGGCC+AGG + chr1_3:5122195-5122214 None:intergenic 45.0%
!!! TGGTTTTGTTTCAGACCCTG+AGG - chr1_3:5122741-5122760 Msa0099090:intron 45.0%
TGTTCACCATGACCCTTCAA+GGG - chr1_3:5122960-5122979 Msa0099090:intron 45.0%
GTTATGCAGTTCAGTCGGAT+TGG - chr1_3:5123067-5123086 Msa0099090:intron 45.0%
AGAGCTTAAGCCCGTAAACA+AGG - chr1_3:5123482-5123501 Msa0099090:intron 45.0%
GGGAGTGAGAAGAGAATAGA+GGG + chr1_3:5123915-5123934 None:intergenic 45.0%
TGGGAGTGAGAAGAGAATAG+AGG + chr1_3:5123916-5123935 None:intergenic 45.0%
!! TGCTTTTTGCAGCAAAGCAG+TGG + chr1_3:5124130-5124149 None:intergenic 45.0%
TGCATTAAGTGGGGTCTACA+AGG + chr1_3:5124189-5124208 None:intergenic 45.0%
GCACGTGAGTTTGCATTAAG+TGG + chr1_3:5124200-5124219 None:intergenic 45.0%
TTACTGCTGCTATGAGCATG+AGG - chr1_3:5124394-5124413 Msa0099090:five_prime_UTR 45.0%
TACTGCTGCTATGAGCATGA+GGG - chr1_3:5124395-5124414 Msa0099090:five_prime_UTR 45.0%
! GATGGTCCTTTGAGTTTGCA+TGG - chr1_3:5124585-5124604 Msa0099090:five_prime_UTR 45.0%
!! ATATAACATTAATATATAAT+AGG + chr1_3:5122679-5122698 None:intergenic 5.0%
!! ATAAAAAAAAATAAAAATCA+AGG + chr1_3:5123455-5123474 None:intergenic 5.0%
TAGATCTTACGGCAGGCTAG+AGG + chr1_3:5121919-5121938 None:intergenic 50.0%
GTCACATAGGTAGCACCATG+AGG - chr1_3:5122559-5122578 Msa0099090:intron 50.0%
AAGCTAGCACTTGTGCCTCA+GGG + chr1_3:5122759-5122778 None:intergenic 50.0%
AAAGCTAGCACTTGTGCCTC+AGG + chr1_3:5122760-5122779 None:intergenic 50.0%
!! TGGTGAACACATGTTGGCTC+TGG + chr1_3:5122949-5122968 None:intergenic 50.0%
GGGTCATGGTGAACACATGT+TGG + chr1_3:5122955-5122974 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG - chr1_3:5122959-5122978 Msa0099090:intron 50.0%
ACTGTGGAACCCTCTTCTCA+AGG - chr1_3:5123133-5123152 Msa0099090:CDS 50.0%
! TGGGTTGGGAGTAACCATGA+TGG + chr1_3:5124012-5124031 None:intergenic 50.0%
AAAGCAGTGGCAGACATGTG+AGG + chr1_3:5124117-5124136 None:intergenic 50.0%
ATGCAAACTCACGTGCCTTC+AGG - chr1_3:5124204-5124223 Msa0099090:five_prime_UTR 50.0%
AACTCACGTGCCTTCAGGAA+TGG - chr1_3:5124209-5124228 Msa0099090:five_prime_UTR 50.0%
GAAGCCATAGCCATTCCTGA+AGG + chr1_3:5124222-5124241 None:intergenic 50.0%
ACTGCTGCTATGAGCATGAG+GGG - chr1_3:5124396-5124415 Msa0099090:five_prime_UTR 50.0%
CCTGAATATCAGCCTCACCA+AGG + chr1_3:5124627-5124646 None:intergenic 50.0%
CCTTGGTGAGGCTGATATTC+AGG - chr1_3:5124624-5124643 Msa0099090:five_prime_UTR 50.0%
AGAAATCTTCCTGGCCACCC+AGG - chr1_3:5122183-5122202 Msa0099090:CDS 55.0%
CAAGTGCCCTTGAAGGGTCA+TGG + chr1_3:5122969-5122988 None:intergenic 55.0%
!! CATGACCCTTCAAGGGCACT+TGG - chr1_3:5122967-5122986 Msa0099090:intron 55.0%
GGTCACCAAGTGCCCTTGAA+GGG + chr1_3:5122975-5122994 None:intergenic 55.0%
AGGTCACCAAGTGCCCTTGA+AGG + chr1_3:5122976-5122995 None:intergenic 55.0%
! AGGGCACTTGGTGACCTAAC+TGG - chr1_3:5122979-5122998 Msa0099090:intron 55.0%
! GGAAGCACGGTGAGAAGAAG+TGG - chr1_3:5123022-5123041 Msa0099090:intron 55.0%
TAGTCGCTTGGGTAGAGCGT+TGG + chr1_3:5123727-5123746 None:intergenic 55.0%
CGTGCCTTCAGGAATGGCTA+TGG - chr1_3:5124215-5124234 Msa0099090:five_prime_UTR 55.0%
! AGCACCATGAGGTGCTCCCT+TGG - chr1_3:5122570-5122589 Msa0099090:intron 60.0%
!! GTAGCCAAGGGAGCACCTCA+TGG + chr1_3:5122577-5122596 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5121420 5124827 5121420 ID=Msa0099090;Name=Msa0099090
chr1_3 mRNA 5121420 5124827 5121420 ID=Msa0099090-mRNA-1;Parent=Msa0099090;Name=Msa0099090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=634|1|1|1|1|1|3|195|448
chr1_3 exon 5121420 5122410 5121420 ID=Msa0099090-mRNA-1:exon:1853;Parent=Msa0099090-mRNA-1
chr1_3 exon 5123093 5123492 5123093 ID=Msa0099090-mRNA-1:exon:1852;Parent=Msa0099090-mRNA-1
chr1_3 exon 5124043 5124827 5124043 ID=Msa0099090-mRNA-1:exon:1851;Parent=Msa0099090-mRNA-1
chr1_3 five_prime_UTR 5124194 5124827 5124194 ID=Msa0099090-mRNA-1:five_prime_utr;Parent=Msa0099090-mRNA-1
chr1_3 CDS 5124043 5124193 5124043 ID=Msa0099090-mRNA-1:cds;Parent=Msa0099090-mRNA-1
chr1_3 CDS 5123093 5123492 5123093 ID=Msa0099090-mRNA-1:cds;Parent=Msa0099090-mRNA-1
chr1_3 CDS 5121615 5122410 5121615 ID=Msa0099090-mRNA-1:cds;Parent=Msa0099090-mRNA-1
chr1_3 three_prime_UTR 5121420 5121614 5121420 ID=Msa0099090-mRNA-1:three_prime_utr;Parent=Msa0099090-mRNA-1
Gene Sequence

>Msa0099090

ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAGCCAAAAGGAAGAGAAATCTTCCTGGCCACCCAGACCCTGAGGCACAAGTGCTAGCTTTGAGTCCCCAAACTCTCTTAGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAGAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACGTCAATGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAACGTTATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGTTTTATCACAGGAGAGTGCATCAATTTCAGCAGTGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCAAAGCCATGGTTTTCAACCACTATCACTAAAAAAGGAACAAGACTTCAATTTAAGACCAGAAATTCCATCATGGTTACTCCCAACCCATTTGAACCATTATCAAAACCCTAACCCTACAACTTTGTTTCCTAATAATTCTTTCAACTCAAACAATATAACTACTGCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGTAACGACAGTGAGTAAAACAGAACCTTGTAGACCCCACTTAATGCAAACTCACGTGCCTTCAGGAATGGCTATGGCTTCACGTGAAGAAATAGGAACTACTGGTTTTTCTCATTGTTTGGCTTCTTATGGGAATAAAGCTGCAATAACTTCTGATTGCTTTGAAGAATCTTCTTCTCTTTTGCATGATGTGATGTATGGTAGTGAGGGCTCACATTCACAATTTGAAGCTGTTACTGCTGCTATGAGCATGAGGGGAATGTTTGATACACAGAGAGATAATAATAACTTTGAGGAACAATATTCCCATTTTGGTAAAAGCAACATTATAAAGAATGGTGGTGCCAATGATGATGAGATGACAAGAGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGTCCTTTGAGTTTGCATGGTAAGCAAAATCAAACTCCTTGGTGA
Protein sequence

>Msa0099090

MMKGLSVDENMSNLTSASSEISASSATKNGKASTNLEPQAKRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAVNPLFSSHSQFHQSHGFQPLSLKKEQDFNLRPEIPSWLLPTHLNHYQNPNPTTLFPNNSFNSNNITTASPHMSATALLQKASQIGVTTVSKTEPCRPHLMQTHVPSGMAMASREEIGTTGFSHCLASYGNKAAITSDCFEESSSLLHDVMYGSEGSHSQFEAVTAAMSMRGMFDTQRDNNNFEEQYSHFGKSNIIKNGGANDDEMTRDFLSLGAFSQRDLFNISGIDGPLSLHGKQNQTPW*