AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381300 MtrunA17_Chr7g0272881 97.619 252 5 1 1 252 1 251 0.0 512
Msa1381300 MtrunA17_Chr2g0319981 31.019 216 126 10 8 207 19 227 5.90e-18 81.6
Msa1381300 MtrunA17_Chr4g0041461 31.361 169 90 7 52 207 74 229 1.78e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381300 AT3G05345.1 62.353 255 82 7 1 252 1 244 1.90e-109 315
Msa1381300 AT2G42750.1 31.081 222 124 9 2 207 25 233 9.88e-17 79.0

Find 102 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCACAGAGAATTATTT+TGG 0.134244 tig0020424:+94975 Msa1381300:CDS
AACATGCTGGGTTGAAAATT+TGG 0.174458 tig0020424:-95410 None:intergenic
CCTTCAATTTAAACATTCTT+TGG 0.229699 tig0020424:+96153 Msa1381300:three_prime_UTR
TTAAACATTCTTTGGATTCC+TGG 0.261201 tig0020424:+96161 Msa1381300:three_prime_UTR
TCGAAAAGCGGCTTTAATTT+CGG 0.279196 tig0020424:-93852 None:intergenic
CTCAGTGCTATCTATAGTTT+GGG 0.286961 tig0020424:-95464 None:intergenic
TTTGGTGTTTGGTTTCTCTA+TGG 0.303094 tig0020424:+96012 Msa1381300:three_prime_UTR
TTCACATTTGTCTCTTCAAC+TGG 0.307988 tig0020424:+94685 Msa1381300:CDS
TCTCAGTGCTATCTATAGTT+TGG 0.308680 tig0020424:-95465 None:intergenic
AAAAGTCATGTAGTGAGATT+TGG 0.310240 tig0020424:-95737 None:intergenic
CAACCTGAACGATCCCATTA+TGG 0.329530 tig0020424:-93657 None:intergenic
GCACTCTGTCATCCAGAAAA+TGG 0.332795 tig0020424:+93579 Msa1381300:five_prime_UTR
CCAAAGAATGTTTAAATTGA+AGG 0.339907 tig0020424:-96153 None:intergenic
CACAGTTGGTCTTACCATAA+TGG 0.340880 tig0020424:+93643 Msa1381300:exon
ACTTTGACATAATCTTCCTT+AGG 0.356859 tig0020424:-95917 None:intergenic
GTTATTCTCAAACTTAGCTT+TGG 0.385126 tig0020424:-95362 None:intergenic
CTACGGATGAATTTGGTGTT+TGG 0.396165 tig0020424:+96001 Msa1381300:three_prime_UTR
TGTGGTTGACTTTGGGATCA+AGG 0.398210 tig0020424:+95955 Msa1381300:three_prime_UTR
GTGTGTGCTACGGATGAATT+TGG 0.398410 tig0020424:+95994 Msa1381300:three_prime_UTR
CTGTGTTTGATAACACTTGC+AGG 0.398736 tig0020424:+95848 Msa1381300:three_prime_UTR
TGCCTCAGCTGATGTATCAT+AGG 0.402393 tig0020424:-95317 None:intergenic
GGTTCACTTCACCCCTCCTA+TGG 0.409915 tig0020424:+93600 Msa1381300:five_prime_UTR
ATGGTTCTGTGGTTGACTTT+GGG 0.411324 tig0020424:+95948 Msa1381300:three_prime_UTR
GAACACTTGATAGTTATTAC+AGG 0.423882 tig0020424:-96131 None:intergenic
CATCTCTGTTGAGGTCTGGA+TGG 0.429052 tig0020424:-93980 None:intergenic
TTACCATAATGGGATCGTTC+AGG 0.432032 tig0020424:+93654 Msa1381300:exon
ATTTCGGCGGCTGAGCAGTT+AGG 0.433399 tig0020424:-93836 None:intergenic
CCAAAATAATTCTCTGTGAT+GGG 0.435014 tig0020424:-94975 None:intergenic
GATGGTTCTGTGGTTGACTT+TGG 0.437474 tig0020424:+95947 Msa1381300:three_prime_UTR
ACATAATGAATGCAACTTCT+CGG 0.437627 tig0020424:-94949 None:intergenic
ACAGTTGGTCTTACCATAAT+GGG 0.440049 tig0020424:+93644 Msa1381300:exon
TCCAAAATAATTCTCTGTGA+TGG 0.443344 tig0020424:-94976 None:intergenic
CTTTGACATAATCTTCCTTA+GGG 0.465160 tig0020424:-95916 None:intergenic
GTTAATGAGTTTCTTTGTGT+CGG 0.474240 tig0020424:+94369 Msa1381300:CDS
GTCCAACAGCACACTGAACT+TGG 0.476520 tig0020424:-94921 None:intergenic
AATTTGTGATGGTGTGTAGT+TGG 0.477410 tig0020424:-94185 None:intergenic
AACAACTGTTTATAGGTCAT+GGG 0.479720 tig0020424:+94890 Msa1381300:intron
CATAATGAATGCAACTTCTC+GGG 0.481674 tig0020424:-94948 None:intergenic
ACGTAATACAACCACAATGA+TGG 0.482587 tig0020424:-96050 None:intergenic
TCCTCTGCTTACACCGTCCT+CGG 0.486253 tig0020424:+93806 Msa1381300:CDS
AGATACTCACTACTTTATAG+TGG 0.491771 tig0020424:-96085 None:intergenic
TTTCAACCCAGCATGTTGAC+TGG 0.504611 tig0020424:+95416 Msa1381300:CDS
TACCAAGTTCAGTGTGCTGT+TGG 0.507441 tig0020424:+94919 Msa1381300:CDS
ATCTTCCTTAGGGTTACTCC+AGG 0.507761 tig0020424:-95906 None:intergenic
TTCACACTCTGGTCTGTCAA+AGG 0.509595 tig0020424:-94331 None:intergenic
TCGACTTACTTTCCCATAGG+AGG 0.511597 tig0020424:-93613 None:intergenic
GACGGTGTAAGCAGAGGAAG+TGG 0.512906 tig0020424:-93801 None:intergenic
CAGCTACTCCCTCTGACTAA+AGG 0.521356 tig0020424:-95828 None:intergenic
TCACACTCTGGTCTGTCAAA+GGG 0.522302 tig0020424:-94330 None:intergenic
TACGTTTCAATAATTTGTGA+TGG 0.522555 tig0020424:-94196 None:intergenic
CGACTTACTTTCCCATAGGA+GGG 0.524856 tig0020424:-93612 None:intergenic
CCGTGTAATTCAAGCATACC+AGG 0.525324 tig0020424:+94034 Msa1381300:CDS
TTTCAGAATACTGAGGTGTA+AGG 0.526250 tig0020424:-95548 None:intergenic
AGATCAAAAGCTTCACACTC+TGG 0.531042 tig0020424:-94342 None:intergenic
CGGCGGCTGAGCAGTTAGGT+TGG 0.531621 tig0020424:-93832 None:intergenic
AATTGCAGAGGCAGAGAAGA+TGG 0.533070 tig0020424:+93770 Msa1381300:CDS
GCTAAAACCAGTCAACATGC+TGG 0.539656 tig0020424:-95423 None:intergenic
GCCTCAGCTGATGTATCATA+GGG 0.543724 tig0020424:-95316 None:intergenic
ATGGGAAAGTAAGTCGAAGT+TGG 0.547488 tig0020424:+93619 Msa1381300:five_prime_UTR
TGACTCTTATTCCATCATTG+TGG 0.547489 tig0020424:+96039 Msa1381300:three_prime_UTR
ACCATGCTAATACTGCTGCC+TGG 0.549143 tig0020424:+95888 Msa1381300:three_prime_UTR
CGTTTAAATCCTTTAGTCAG+AGG 0.553357 tig0020424:+95819 Msa1381300:three_prime_UTR
ACTTCGACTTACTTTCCCAT+AGG 0.554474 tig0020424:-93616 None:intergenic
GACTTACTTTCCCATAGGAG+GGG 0.555773 tig0020424:-93611 None:intergenic
AAGGATTTAAACGCCATGGC+AGG 0.561465 tig0020424:-95809 None:intergenic
TAGTTTGGGGAGTGAAGACA+TGG 0.562442 tig0020424:-95450 None:intergenic
GTTCACTTCACCCCTCCTAT+GGG 0.564229 tig0020424:+93601 Msa1381300:five_prime_UTR
GTTTAAATCCTTTAGTCAGA+GGG 0.564950 tig0020424:+95820 Msa1381300:three_prime_UTR
TATGTCAAAGTCAATTGTGA+TGG 0.565976 tig0020424:+95929 Msa1381300:three_prime_UTR
GAGTTTCTTTGTGTCGGCAA+AGG 0.566077 tig0020424:+94375 Msa1381300:CDS
CTGTGGTGGTGTGTGTGCTA+CGG 0.586058 tig0020424:+95984 Msa1381300:three_prime_UTR
CTAAAACCAGTCAACATGCT+GGG 0.591004 tig0020424:-95422 None:intergenic
AGAAGAGAGCACAACACAAG+TGG 0.593219 tig0020424:+93557 None:intergenic
CAAAATAATTCTCTGTGATG+GGG 0.597740 tig0020424:-94974 None:intergenic
TGCTGCCTGGAGTAACCCTA+AGG 0.606377 tig0020424:+95901 Msa1381300:three_prime_UTR
TTCTTTAAAGACACAGACAA+AGG 0.611750 tig0020424:-93734 None:intergenic
TCCAGGCAGCAGTATTAGCA+TGG 0.618759 tig0020424:-95889 None:intergenic
ACTAAAGGATTTAAACGCCA+TGG 0.620443 tig0020424:-95813 None:intergenic
ACAGCACGTGCATCTTCTCA+AGG 0.621543 tig0020424:+94709 Msa1381300:CDS
TGATACTTTGGATCGAAAAG+CGG 0.622876 tig0020424:-93864 None:intergenic
GTTAGGTTGGACTCCGAGGA+CGG 0.622942 tig0020424:-93819 None:intergenic
AGTCAATTGTGATGGTTCTG+TGG 0.623540 tig0020424:+95937 Msa1381300:three_prime_UTR
TCCGAGGACGGTGTAAGCAG+AGG 0.625114 tig0020424:-93807 None:intergenic
CCTGGTATGCTTGAATTACA+CGG 0.626987 tig0020424:-94034 None:intergenic
ACAACTGTTTATAGGTCATG+GGG 0.627093 tig0020424:+94891 Msa1381300:intron
AAGTCGAAGTTGGACACAGT+TGG 0.629994 tig0020424:+93629 Msa1381300:five_prime_UTR
AGCAGTTAGGTTGGACTCCG+AGG 0.631176 tig0020424:-93823 None:intergenic
AAAACAAGAACGAATTGCAG+AGG 0.651160 tig0020424:+93758 Msa1381300:CDS
ATGAGGTGCTCTTTCCACAC+AGG 0.664251 tig0020424:-94659 None:intergenic
ACCCTATGATACATCAGCTG+AGG 0.667271 tig0020424:+95315 Msa1381300:CDS
TAAGCAGAGGAAGTGGACAG+AGG 0.671934 tig0020424:-93794 None:intergenic
TTACATGTTTCAGAATACTG+AGG 0.676400 tig0020424:-95555 None:intergenic
GATTGCTGATGAGACAGTCA+TGG 0.694367 tig0020424:+95486 Msa1381300:three_prime_UTR
AAAAGCGGCTTTAATTTCGG+CGG 0.695406 tig0020424:-93849 None:intergenic
GAGACAAATGTGAAAGCATG+AGG 0.702751 tig0020424:-94676 None:intergenic
TCAGTGCTATCTATAGTTTG+GGG 0.710241 tig0020424:-95463 None:intergenic
GATCAAGGCATATACTGTGG+TGG 0.711117 tig0020424:+95970 Msa1381300:three_prime_UTR
TGGGATCAAGGCATATACTG+TGG 0.712148 tig0020424:+95967 Msa1381300:three_prime_UTR
ACACAGACAAAGGAAAAGTG+CGG 0.720075 tig0020424:-93724 None:intergenic
TGTTTGATAACACTTGCAGG+TGG 0.732567 tig0020424:+95851 Msa1381300:three_prime_UTR
AGCTTGTTCAAATTCCTGTG+TGG 0.759817 tig0020424:+94645 Msa1381300:intron
AGTTTGGGGAGTGAAGACAT+GGG 0.801612 tig0020424:-95449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAAAATAAAAATTGT+AGG - tig0020424:95040-95059 None:intergenic 10.0%
!!! ACAATTTTTATTTTTTTACT+TGG + tig0020424:95040-95059 Msa1381300:intron 10.0%
!!! TTCTCTTTAATTTATTACTT+AGG + tig0020424:93947-93966 Msa1381300:intron 15.0%
!!! ATTTTTATTTTTTTACTTGG+TGG + tig0020424:95043-95062 Msa1381300:intron 15.0%
!!! TTTTTATTTTTTTACTTGGT+GGG + tig0020424:95044-95063 Msa1381300:intron 15.0%
!! AAAGATAATATATTGACAAA+GGG - tig0020424:95095-95114 None:intergenic 15.0%
!! ATCTTTCTTATAAAACTAAA+AGG + tig0020424:95109-95128 Msa1381300:intron 15.0%
!! ATGATAGAAATAGATAAATA+GGG - tig0020424:95159-95178 None:intergenic 15.0%
!! TATGATAGAAATAGATAAAT+AGG - tig0020424:95160-95179 None:intergenic 15.0%
!!! TATAACATATTATTACCTTT+TGG + tig0020424:95206-95225 Msa1381300:intron 15.0%
!! TTAAACTCATCAATGTAAAA+TGG - tig0020424:94616-94635 None:intergenic 20.0%
!! TAATGAATTTCTCAAAATGA+AGG - tig0020424:94762-94781 None:intergenic 20.0%
!! GAAAGATAATATATTGACAA+AGG - tig0020424:95096-95115 None:intergenic 20.0%
!! AAAGGAAATAAGAAATCAAA+TGG - tig0020424:95268-95287 None:intergenic 20.0%
!!! CTTATTTTAAGATTTTGCAA+CGG + tig0020424:95621-95640 Msa1381300:intron 20.0%
!!! TTTTTATTATAGAAATGACC+AGG - tig0020424:96182-96201 None:intergenic 20.0%
! AATGATTGATGTTGATACTT+TGG - tig0020424:93879-93898 None:intergenic 25.0%
! TGAATTGAAGAGAATGAAAA+TGG - tig0020424:93915-93934 None:intergenic 25.0%
!! TACGTTTCAATAATTTGTGA+TGG - tig0020424:94199-94218 None:intergenic 25.0%
! CCGTAAATTTCAAAACAATA+CGG - tig0020424:94245-94264 None:intergenic 25.0%
!!! CCGTATTGTTTTGAAATTTA+CGG + tig0020424:94242-94261 Msa1381300:intron 25.0%
! ACATAATTTCATGTCATGTA+AGG - tig0020424:94434-94453 None:intergenic 25.0%
! ACAATTTAGACCACATATAT+CGG + tig0020424:94464-94483 Msa1381300:intron 25.0%
! AATTTCTCAAAATGAAGGAA+GGG - tig0020424:94757-94776 None:intergenic 25.0%
! TATCTTCAACAACTGTTTAT+AGG + tig0020424:94883-94902 Msa1381300:intron 25.0%
! ATAAATAGGGAAATTAAGCA+TGG - tig0020424:95146-95165 None:intergenic 25.0%
! AAACATTGTATGATTCCAAA+AGG - tig0020424:95224-95243 None:intergenic 25.0%
! ATACTGAAACATCAACAAAA+AGG - tig0020424:95286-95305 None:intergenic 25.0%
!!! GAAAATTTGGTTTTCTTCTT+TGG - tig0020424:95400-95419 None:intergenic 25.0%
! GCAGCTCATAAAAAATTTAT+TGG - tig0020424:95519-95538 None:intergenic 25.0%
!!! ATTTTTTATGAGCTGCTTAT+AGG + tig0020424:95523-95542 Msa1381300:three_prime_UTR 25.0%
! CCAAAGAATGTTTAAATTGA+AGG - tig0020424:96156-96175 None:intergenic 25.0%
! CCTTCAATTTAAACATTCTT+TGG + tig0020424:96153-96172 Msa1381300:three_prime_UTR 25.0%
! TTCTTTAAAGACACAGACAA+AGG - tig0020424:93737-93756 None:intergenic 30.0%
! TTTCATTTTCATCTCTGTTG+AGG - tig0020424:93992-94011 None:intergenic 30.0%
AAGAATGAGTGAGTTTAAGA+AGG - tig0020424:94075-94094 None:intergenic 30.0%
GTTAATGAGTTTCTTTGTGT+CGG + tig0020424:94369-94388 Msa1381300:CDS 30.0%
GAATTTCTCAAAATGAAGGA+AGG - tig0020424:94758-94777 None:intergenic 30.0%
AACAACTGTTTATAGGTCAT+GGG + tig0020424:94890-94909 Msa1381300:intron 30.0%
ACATAATGAATGCAACTTCT+CGG - tig0020424:94952-94971 None:intergenic 30.0%
CAAAATAATTCTCTGTGATG+GGG - tig0020424:94977-94996 None:intergenic 30.0%
CCAAAATAATTCTCTGTGAT+GGG - tig0020424:94978-94997 None:intergenic 30.0%
TCCAAAATAATTCTCTGTGA+TGG - tig0020424:94979-94998 None:intergenic 30.0%
!!! ATCACAGAGAATTATTTTGG+AGG + tig0020424:94978-94997 Msa1381300:CDS 30.0%
GTTATTCTCAAACTTAGCTT+TGG - tig0020424:95365-95384 None:intergenic 30.0%
TTACATGTTTCAGAATACTG+AGG - tig0020424:95558-95577 None:intergenic 30.0%
TGTAAGCTACTTACTACAAT+CGG + tig0020424:95573-95592 Msa1381300:intron 30.0%
!!! TTTTAAGATTTTGCAACGGA+TGG + tig0020424:95625-95644 Msa1381300:intron 30.0%
TTCTTTCAGTGAATGAATCA+AGG + tig0020424:95670-95689 Msa1381300:intron 30.0%
TCTTTCAGTGAATGAATCAA+GGG + tig0020424:95671-95690 Msa1381300:intron 30.0%
AAAAGTCATGTAGTGAGATT+TGG - tig0020424:95740-95759 None:intergenic 30.0%
! AATTTTTCGTCATTTCCACA+AGG - tig0020424:95763-95782 None:intergenic 30.0%
! ATTTCTAATTTTTCCTGCCA+TGG + tig0020424:95796-95815 Msa1381300:three_prime_UTR 30.0%
GTTTAAATCCTTTAGTCAGA+GGG + tig0020424:95820-95839 Msa1381300:three_prime_UTR 30.0%
CTTTGACATAATCTTCCTTA+GGG - tig0020424:95919-95938 None:intergenic 30.0%
ACTTTGACATAATCTTCCTT+AGG - tig0020424:95920-95939 None:intergenic 30.0%
TATGTCAAAGTCAATTGTGA+TGG + tig0020424:95929-95948 Msa1381300:three_prime_UTR 30.0%
AGATACTCACTACTTTATAG+TGG - tig0020424:96088-96107 None:intergenic 30.0%
! GAACACTTGATAGTTATTAC+AGG - tig0020424:96134-96153 None:intergenic 30.0%
TTAAACATTCTTTGGATTCC+TGG + tig0020424:96161-96180 Msa1381300:three_prime_UTR 30.0%
!! ACAGTTGGTCTTACCATAAT+GGG + tig0020424:93644-93663 Msa1381300:exon 35.0%
AAAACAAGAACGAATTGCAG+AGG + tig0020424:93758-93777 Msa1381300:CDS 35.0%
! TCGAAAAGCGGCTTTAATTT+CGG - tig0020424:93855-93874 None:intergenic 35.0%
TGATACTTTGGATCGAAAAG+CGG - tig0020424:93867-93886 None:intergenic 35.0%
! TATGATGTGTGGTAGTGAAT+AGG - tig0020424:94101-94120 None:intergenic 35.0%
ACTATGCTGTATATGATGTG+TGG - tig0020424:94112-94131 None:intergenic 35.0%
! TCTGCAGTAAAAAAGCATGA+AGG - tig0020424:94159-94178 None:intergenic 35.0%
! AATTTGTGATGGTGTGTAGT+TGG - tig0020424:94188-94207 None:intergenic 35.0%
!!! TGCTGACTTTTCACTTTTCA+GGG + tig0020424:94296-94315 Msa1381300:intron 35.0%
TTCACATTTGTCTCTTCAAC+TGG + tig0020424:94685-94704 Msa1381300:CDS 35.0%
CAACAACTGTTTATAGGTCA+TGG + tig0020424:94889-94908 Msa1381300:intron 35.0%
ACAACTGTTTATAGGTCATG+GGG + tig0020424:94891-94910 Msa1381300:intron 35.0%
CATAATGAATGCAACTTCTC+GGG - tig0020424:94951-94970 None:intergenic 35.0%
! CCCATCACAGAGAATTATTT+TGG + tig0020424:94975-94994 Msa1381300:CDS 35.0%
!!! TCTTCTTTGGCTTTTGGTAT+CGG - tig0020424:95387-95406 None:intergenic 35.0%
!!! TGGTTTTCTTCTTTGGCTTT+TGG - tig0020424:95393-95412 None:intergenic 35.0%
! AACATGCTGGGTTGAAAATT+TGG - tig0020424:95413-95432 None:intergenic 35.0%
TCAGTGCTATCTATAGTTTG+GGG - tig0020424:95466-95485 None:intergenic 35.0%
CTCAGTGCTATCTATAGTTT+GGG - tig0020424:95467-95486 None:intergenic 35.0%
TCTCAGTGCTATCTATAGTT+TGG - tig0020424:95468-95487 None:intergenic 35.0%
TTTCAGAATACTGAGGTGTA+AGG - tig0020424:95551-95570 None:intergenic 35.0%
GTAAGCTACTTACTACAATC+GGG + tig0020424:95574-95593 Msa1381300:intron 35.0%
ACTAAAGGATTTAAACGCCA+TGG - tig0020424:95816-95835 None:intergenic 35.0%
CGTTTAAATCCTTTAGTCAG+AGG + tig0020424:95819-95838 Msa1381300:three_prime_UTR 35.0%
!! TTTGGTGTTTGGTTTCTCTA+TGG + tig0020424:96012-96031 Msa1381300:three_prime_UTR 35.0%
TGACTCTTATTCCATCATTG+TGG + tig0020424:96039-96058 Msa1381300:three_prime_UTR 35.0%
ACGTAATACAACCACAATGA+TGG - tig0020424:96053-96072 None:intergenic 35.0%
! AGTAGTGAGTATCTTTTCAC+AGG + tig0020424:96094-96113 Msa1381300:three_prime_UTR 35.0%
ACTTCGACTTACTTTCCCAT+AGG - tig0020424:93619-93638 None:intergenic 40.0%
ATGGGAAAGTAAGTCGAAGT+TGG + tig0020424:93619-93638 Msa1381300:five_prime_UTR 40.0%
!! CACAGTTGGTCTTACCATAA+TGG + tig0020424:93643-93662 Msa1381300:exon 40.0%
! TTACCATAATGGGATCGTTC+AGG + tig0020424:93654-93673 Msa1381300:exon 40.0%
ACACAGACAAAGGAAAAGTG+CGG - tig0020424:93727-93746 None:intergenic 40.0%
! AAAAGCGGCTTTAATTTCGG+CGG - tig0020424:93852-93871 None:intergenic 40.0%
! TTTTCATCTCTGTTGAGGTC+TGG - tig0020424:93987-94006 None:intergenic 40.0%
CCTGGTATGCTTGAATTACA+CGG - tig0020424:94037-94056 None:intergenic 40.0%
CTGAAAAGTGAAAAGTCAGC+AGG - tig0020424:94297-94316 None:intergenic 40.0%
!!! CTGCTGACTTTTCACTTTTC+AGG + tig0020424:94295-94314 Msa1381300:intron 40.0%
AGATCAAAAGCTTCACACTC+TGG - tig0020424:94345-94364 None:intergenic 40.0%
! ATTAAAGGTGTGTCCAGTGT+AGG - tig0020424:94512-94531 None:intergenic 40.0%
ACACCTTTAATCTGCAAGTG+TGG + tig0020424:94521-94540 Msa1381300:intron 40.0%
TACAATGTCTCAACGTCACT+TGG + tig0020424:94562-94581 Msa1381300:intron 40.0%
ACAATGTCTCAACGTCACTT+GGG + tig0020424:94563-94582 Msa1381300:intron 40.0%
! AGCTTGTTCAAATTCCTGTG+TGG + tig0020424:94645-94664 Msa1381300:intron 40.0%
! GAGACAAATGTGAAAGCATG+AGG - tig0020424:94679-94698 None:intergenic 40.0%
!! TTTTGGAGGAGCTACTTAAC+AGG + tig0020424:94992-95011 Msa1381300:CDS 40.0%
!!! TTTTTTTACTTGGTGGGCTG+TGG + tig0020424:95050-95069 Msa1381300:intron 40.0%
CTAAAACCAGTCAACATGCT+GGG - tig0020424:95425-95444 None:intergenic 40.0%
! TAAGATTTTGCAACGGATGG+CGG + tig0020424:95628-95647 Msa1381300:intron 40.0%
! CACTACATGACTTTTCCTTG+TGG + tig0020424:95745-95764 Msa1381300:three_prime_UTR 40.0%
! CTGTGTTTGATAACACTTGC+AGG + tig0020424:95848-95867 Msa1381300:three_prime_UTR 40.0%
! TGTTTGATAACACTTGCAGG+TGG + tig0020424:95851-95870 Msa1381300:three_prime_UTR 40.0%
! AGTCAATTGTGATGGTTCTG+TGG + tig0020424:95937-95956 Msa1381300:three_prime_UTR 40.0%
! ATGGTTCTGTGGTTGACTTT+GGG + tig0020424:95948-95967 Msa1381300:three_prime_UTR 40.0%
!! CTACGGATGAATTTGGTGTT+TGG + tig0020424:96001-96020 Msa1381300:three_prime_UTR 40.0%
GCACTCTGTCATCCAGAAAA+TGG + tig0020424:93579-93598 Msa1381300:five_prime_UTR 45.0%
! GGGTGAAGTGAACCATTTTC+TGG - tig0020424:93594-93613 None:intergenic 45.0%
GACTTACTTTCCCATAGGAG+GGG - tig0020424:93614-93633 None:intergenic 45.0%
CGACTTACTTTCCCATAGGA+GGG - tig0020424:93615-93634 None:intergenic 45.0%
TCGACTTACTTTCCCATAGG+AGG - tig0020424:93616-93635 None:intergenic 45.0%
AAGTCGAAGTTGGACACAGT+TGG + tig0020424:93629-93648 Msa1381300:five_prime_UTR 45.0%
CAACCTGAACGATCCCATTA+TGG - tig0020424:93660-93679 None:intergenic 45.0%
AATTGCAGAGGCAGAGAAGA+TGG + tig0020424:93770-93789 Msa1381300:CDS 45.0%
CCGTGTAATTCAAGCATACC+AGG + tig0020424:94034-94053 Msa1381300:CDS 45.0%
CAAGCATACCAGGTACTACT+TGG + tig0020424:94044-94063 Msa1381300:intron 45.0%
!! AGGAAGTACCAAGTAGTACC+TGG - tig0020424:94055-94074 None:intergenic 45.0%
TCACACTCTGGTCTGTCAAA+GGG - tig0020424:94333-94352 None:intergenic 45.0%
TTCACACTCTGGTCTGTCAA+AGG - tig0020424:94334-94353 None:intergenic 45.0%
! GAGTTTCTTTGTGTCGGCAA+AGG + tig0020424:94375-94394 Msa1381300:CDS 45.0%
! TTCTTTGTGTCGGCAAAGGT+AGG + tig0020424:94379-94398 Msa1381300:intron 45.0%
TAGACCACATATATCGGTGC+AGG + tig0020424:94470-94489 Msa1381300:intron 45.0%
GCTCCACACTTGCAGATTAA+AGG - tig0020424:94527-94546 None:intergenic 45.0%
TACCAAGTTCAGTGTGCTGT+TGG + tig0020424:94919-94938 Msa1381300:CDS 45.0%
ACCCTATGATACATCAGCTG+AGG + tig0020424:95315-95334 Msa1381300:CDS 45.0%
GCCTCAGCTGATGTATCATA+GGG - tig0020424:95319-95338 None:intergenic 45.0%
TGCCTCAGCTGATGTATCAT+AGG - tig0020424:95320-95339 None:intergenic 45.0%
TTTCAACCCAGCATGTTGAC+TGG + tig0020424:95416-95435 Msa1381300:CDS 45.0%
GCTAAAACCAGTCAACATGC+TGG - tig0020424:95426-95445 None:intergenic 45.0%
AGTTTGGGGAGTGAAGACAT+GGG - tig0020424:95452-95471 None:intergenic 45.0%
TAGTTTGGGGAGTGAAGACA+TGG - tig0020424:95453-95472 None:intergenic 45.0%
GATTGCTGATGAGACAGTCA+TGG + tig0020424:95486-95505 Msa1381300:three_prime_UTR 45.0%
! AAGATTTTGCAACGGATGGC+GGG + tig0020424:95629-95648 Msa1381300:intron 45.0%
AAGGATTTAAACGCCATGGC+AGG - tig0020424:95812-95831 None:intergenic 45.0%
ATCTTCCTTAGGGTTACTCC+AGG - tig0020424:95909-95928 None:intergenic 45.0%
! GATGGTTCTGTGGTTGACTT+TGG + tig0020424:95947-95966 Msa1381300:three_prime_UTR 45.0%
!! TGTGGTTGACTTTGGGATCA+AGG + tig0020424:95955-95974 Msa1381300:three_prime_UTR 45.0%
TGGGATCAAGGCATATACTG+TGG + tig0020424:95967-95986 Msa1381300:three_prime_UTR 45.0%
GATCAAGGCATATACTGTGG+TGG + tig0020424:95970-95989 Msa1381300:three_prime_UTR 45.0%
GTGTGTGCTACGGATGAATT+TGG + tig0020424:95994-96013 Msa1381300:three_prime_UTR 45.0%
GTTCACTTCACCCCTCCTAT+GGG + tig0020424:93601-93620 Msa1381300:five_prime_UTR 50.0%
TAAGCAGAGGAAGTGGACAG+AGG - tig0020424:93797-93816 None:intergenic 50.0%
CATCTCTGTTGAGGTCTGGA+TGG - tig0020424:93983-94002 None:intergenic 50.0%
! GTGTCCTGCACCGATATATG+TGG - tig0020424:94477-94496 None:intergenic 50.0%
CTGCATGCAATGTCCTACAC+TGG + tig0020424:94496-94515 Msa1381300:intron 50.0%
! ATGAGGTGCTCTTTCCACAC+AGG - tig0020424:94662-94681 None:intergenic 50.0%
ACAGCACGTGCATCTTCTCA+AGG + tig0020424:94709-94728 Msa1381300:CDS 50.0%
GTCCAACAGCACACTGAACT+TGG - tig0020424:94924-94943 None:intergenic 50.0%
! AGATTTTGCAACGGATGGCG+GGG + tig0020424:95630-95649 Msa1381300:intron 50.0%
ACGTGAATGCGTGATACTGC+AGG + tig0020424:95710-95729 Msa1381300:intron 50.0%
CAGCTACTCCCTCTGACTAA+AGG - tig0020424:95831-95850 None:intergenic 50.0%
ACCATGCTAATACTGCTGCC+TGG + tig0020424:95888-95907 Msa1381300:three_prime_UTR 50.0%
TCCAGGCAGCAGTATTAGCA+TGG - tig0020424:95892-95911 None:intergenic 50.0%
GGTTCACTTCACCCCTCCTA+TGG + tig0020424:93600-93619 Msa1381300:five_prime_UTR 55.0%
GACGGTGTAAGCAGAGGAAG+TGG - tig0020424:93804-93823 None:intergenic 55.0%
TCCTCTGCTTACACCGTCCT+CGG + tig0020424:93806-93825 Msa1381300:CDS 55.0%
!! GTTAGGTTGGACTCCGAGGA+CGG - tig0020424:93822-93841 None:intergenic 55.0%
!! AGCAGTTAGGTTGGACTCCG+AGG - tig0020424:93826-93845 None:intergenic 55.0%
ATTTCGGCGGCTGAGCAGTT+AGG - tig0020424:93839-93858 None:intergenic 55.0%
TGCTGCCTGGAGTAACCCTA+AGG + tig0020424:95901-95920 Msa1381300:three_prime_UTR 55.0%
! CTGTGGTGGTGTGTGTGCTA+CGG + tig0020424:95984-96003 Msa1381300:three_prime_UTR 55.0%
TCCGAGGACGGTGTAAGCAG+AGG - tig0020424:93810-93829 None:intergenic 60.0%
CGGCGGCTGAGCAGTTAGGT+TGG - tig0020424:93835-93854 None:intergenic 65.0%
!! TGCAACGGATGGCGGGGAAG+TGG + tig0020424:95636-95655 Msa1381300:intron 65.0%
!! ACGGATGGCGGGGAAGTGGC+AGG + tig0020424:95640-95659 Msa1381300:intron 70.0%
!! CGGATGGCGGGGAAGTGGCA+GGG + tig0020424:95641-95660 Msa1381300:intron 70.0%
!! GGATGGCGGGGAAGTGGCAG+GGG + tig0020424:95642-95661 Msa1381300:intron 70.0%
!! GATGGCGGGGAAGTGGCAGG+GGG + tig0020424:95643-95662 Msa1381300:intron 70.0%
Chromosome Type Strat End Strand Name
tig0020424 gene 93566 96219 93566 ID=Msa1381300;Name=Msa1381300
tig0020424 mRNA 93566 96219 93566 ID=Msa1381300-mRNA-1;Parent=Msa1381300;Name=Msa1381300-mRNA-1;_AED=0.33;_eAED=0.33;_QI=96|1|1|1|0.85|0.75|8|617|252
tig0020424 exon 93566 93880 93566 ID=Msa1381300-mRNA-1:exon:7493;Parent=Msa1381300-mRNA-1
tig0020424 exon 93969 94055 93969 ID=Msa1381300-mRNA-1:exon:7494;Parent=Msa1381300-mRNA-1
tig0020424 exon 94178 94215 94178 ID=Msa1381300-mRNA-1:exon:7495;Parent=Msa1381300-mRNA-1
tig0020424 exon 94317 94396 94317 ID=Msa1381300-mRNA-1:exon:7496;Parent=Msa1381300-mRNA-1
tig0020424 exon 94647 94730 94647 ID=Msa1381300-mRNA-1:exon:7497;Parent=Msa1381300-mRNA-1
tig0020424 exon 94905 95013 94905 ID=Msa1381300-mRNA-1:exon:7498;Parent=Msa1381300-mRNA-1
tig0020424 exon 95303 95573 95303 ID=Msa1381300-mRNA-1:exon:7499;Parent=Msa1381300-mRNA-1
tig0020424 exon 95732 96219 95732 ID=Msa1381300-mRNA-1:exon:7500;Parent=Msa1381300-mRNA-1
tig0020424 five_prime_UTR 93566 93661 93566 ID=Msa1381300-mRNA-1:five_prime_utr;Parent=Msa1381300-mRNA-1
tig0020424 CDS 93662 93880 93662 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 93969 94055 93969 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 94178 94215 94178 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 94317 94396 94317 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 94647 94730 94647 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 94905 95013 94905 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 CDS 95303 95444 95303 ID=Msa1381300-mRNA-1:cds;Parent=Msa1381300-mRNA-1
tig0020424 three_prime_UTR 95445 95573 95445 ID=Msa1381300-mRNA-1:three_prime_utr;Parent=Msa1381300-mRNA-1
tig0020424 three_prime_UTR 95732 96219 95732 ID=Msa1381300-mRNA-1:three_prime_utr;Parent=Msa1381300-mRNA-1
Gene Sequence

>Msa1381300

ATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATGCTATGATTCGCCGTGTAATTCAAGCATACCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTCATGGGGAAGACTACCAAGTTCAGTGTGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAG

Protein sequence

>Msa1381300

MGSFRLFSFNLTTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYTVLGVQPNCSAAEIKAAFRSKVKQFHPDLNRDENETYSDAMIRRVIQAYQILSNYTPSQIIETECLDPFDRPECEAFDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSCIHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDWF*