AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0829770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829770 MtrunA17_Chr2g0280091 93.275 461 30 1 10 469 1 461 0.0 873
Msa0829770 MtrunA17_Chr4g0049371 70.565 513 114 4 16 510 36 529 0.0 732
Msa0829770 MtrunA17_Chr5g0411431 62.919 507 159 5 16 507 5 497 0.0 620
Msa0829770 MtrunA17_Chr2g0280111 73.092 249 22 2 262 510 13 216 3.18e-120 352
Msa0829770 MtrunA17_Chr2g0280101 80.214 187 18 2 43 214 1 183 2.84e-97 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829770 AT5G64500.1 60.079 506 148 3 6 493 14 483 0.0 611
Msa0829770 AT2G22730.3 61.010 495 177 3 17 495 38 532 0.0 603
Msa0829770 AT2G22730.2 60.736 489 175 3 17 490 38 524 0.0 587
Msa0829770 AT2G22730.6 59.229 493 163 4 17 495 38 506 0.0 579
Msa0829770 AT2G22730.1 58.932 487 161 4 17 490 38 498 0.0 564
Msa0829770 AT5G65687.1 53.411 513 201 6 5 501 2 492 0.0 535
Msa0829770 AT2G22730.7 61.058 416 158 2 78 491 1 414 7.95e-179 509
Msa0829770 AT2G22730.5 59.698 397 145 2 17 398 38 434 2.27e-161 468
Msa0829770 AT2G22730.4 56.461 356 118 3 17 359 38 369 2.32e-134 394

Find 111 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTATCAAATGCATTTA+AGG 0.118415 5_4:+2800134 Msa0829770:CDS
ACTGATTCAGATTTGGTATT+TGG 0.129701 5_4:+2800042 Msa0829770:CDS
ATGCTTCCATTTGCTATTTC+AGG 0.131188 5_4:+2798958 Msa0829770:CDS
CTTAGGTGCTTACTCATATT+GGG 0.163614 5_4:+2799799 Msa0829770:CDS
TTGGTTGGCGTTATGCATTC+TGG 0.184635 5_4:+2798920 Msa0829770:CDS
GATTAATTTGTTAAACTATT+TGG 0.194774 5_4:+2796927 Msa0829770:CDS
GTAAATCCATTTAGACTTAT+AGG 0.204179 5_4:+2798103 Msa0829770:CDS
CTCTCAGTGACAACATTTCT+TGG 0.208157 5_4:+2800570 Msa0829770:CDS
TAACAGATTGGAAGTAATTT+TGG 0.216065 5_4:+2798901 Msa0829770:intron
GTTTATATTATCAATGTTCT+AGG 0.217385 5_4:+2799542 Msa0829770:CDS
CCAACTCCTATAAGTCTAAA+TGG 0.221380 5_4:-2798109 None:intergenic
TCTTAGGTGCTTACTCATAT+TGG 0.225768 5_4:+2799798 Msa0829770:CDS
TATGCACTTGGCTATGTTTA+TGG 0.253229 5_4:+2798742 Msa0829770:CDS
ACCGTTGCCATTCATCTCTT+TGG 0.255031 5_4:+2801054 Msa0829770:CDS
TACAATTGTATGTGGAATAG+TGG 0.292899 5_4:+2800071 Msa0829770:CDS
CCATGATTCCCACAACTTCA+TGG 0.295748 5_4:+2796613 Msa0829770:CDS
GATATGAATTTCATAGGAAA+TGG 0.309390 5_4:-2802298 None:intergenic
ATAGCGTACAACTTTGTCTT+AGG 0.313540 5_4:+2799782 Msa0829770:CDS
ATAGCTAGCAATGGTGTTAA+TGG 0.334552 5_4:+2796961 Msa0829770:CDS
TGTTCCTGTTGATTTGATAA+AGG 0.334594 5_4:+2799090 Msa0829770:CDS
TAAATATTGTAGACAACTTT+GGG 0.335747 5_4:-2799824 None:intergenic
TCCAGCCGCTGGACACAATA+TGG 0.344058 5_4:-2801741 None:intergenic
TCCATTGATATGAATTTCAT+AGG 0.345780 5_4:-2802304 None:intergenic
GTGCCTTCCTCACCCCTTGT+TGG 0.349853 5_4:+2801081 Msa0829770:CDS
TCTCAGTGACAACATTTCTT+GGG 0.352146 5_4:+2800571 Msa0829770:CDS
TGACAATGCCCCGGCTTCTC+TGG 0.352641 5_4:+2798393 Msa0829770:CDS
TTGGCAGACTGATTCAGATT+TGG 0.357099 5_4:+2800035 Msa0829770:intron
TTAGTTATACAATACCTCTT+TGG 0.358595 5_4:-2796642 None:intergenic
TGTGTCCAGCGGCTGGAATA+TGG 0.373453 5_4:+2801747 Msa0829770:CDS
TCCTATGAAATTCATATCAA+TGG 0.379668 5_4:+2802303 Msa0829770:three_prime_UTR
GGGAATCATGGATGACACTA+TGG 0.383133 5_4:-2796601 None:intergenic
ATAAATATTGTAGACAACTT+TGG 0.392903 5_4:-2799825 None:intergenic
TGAGCTAGAGAGGCAAATAT+TGG 0.393358 5_4:-2797597 None:intergenic
TGGCTATGTTTATGGTGGTT+TGG 0.400561 5_4:+2798750 Msa0829770:CDS
AACATCCAAAGTCTTGTTCA+TGG 0.403880 5_4:+2796572 Msa0829770:CDS
ATTGGCTGGAGGATTTGTTC+TGG 0.405042 5_4:+2800098 Msa0829770:CDS
ACCCCTTGTTGGAGTTCTCC+AGG 0.406458 5_4:+2801092 Msa0829770:CDS
ATATGAATTTCATAGGAAAT+GGG 0.412946 5_4:-2802297 None:intergenic
ATGAGATATTGATGTTTCTT+CGG 0.414184 5_4:-2802137 None:intergenic
GGAATAGTGGGCACATTGGC+TGG 0.421757 5_4:+2800084 Msa0829770:CDS
CTGGACACAATATGGTTGTT+AGG 0.422253 5_4:-2801733 None:intergenic
GACCTTAAATGCATTTGATA+AGG 0.427906 5_4:-2800136 None:intergenic
AAAATGATTTCATGATAAAT+CGG 0.428841 5_4:-2802257 None:intergenic
CCATTTAGACTTATAGGAGT+TGG 0.430523 5_4:+2798109 Msa0829770:CDS
TGTGCCTTTATCAAATCAAC+AGG 0.433163 5_4:-2799094 None:intergenic
ACATCTAGTGTTAGATAGAA+AGG 0.436620 5_4:+2796506 Msa0829770:five_prime_UTR
TTGTTAAACTATTTGGATCA+AGG 0.438250 5_4:+2796934 Msa0829770:CDS
TGGTTGGCGTTATGCATTCT+GGG 0.445125 5_4:+2798921 Msa0829770:CDS
ACCATATTGTGTCCAGCGGC+TGG 0.445261 5_4:+2801740 Msa0829770:CDS
GTAGACATGGCCATGGATAA+AGG 0.447565 5_4:-2801033 None:intergenic
GCGGCTGGAATATGGTTTAT+CGG 0.450229 5_4:+2801755 Msa0829770:CDS
AAAAGCAAACCAGAGAAGCC+GGG 0.461774 5_4:-2798402 None:intergenic
CTGTATAGGCTGGTTGGTGT+TGG 0.467793 5_4:+2798331 Msa0829770:intron
TCTGTACCTTTCAACTGTAA+AGG 0.468312 5_4:-2798994 None:intergenic
GATTCAGATTTGGTATTTGG+AGG 0.468406 5_4:+2800045 Msa0829770:CDS
CCATGAAGTTGTGGGAATCA+TGG 0.468969 5_4:-2796613 None:intergenic
AATGGTGTTAATGGAAGTAC+AGG 0.469707 5_4:+2796970 Msa0829770:CDS
ATTATTCTGTATAGGCTGGT+TGG 0.470521 5_4:+2798325 Msa0829770:intron
ATTCACATTTCTGCATAAGA+AGG 0.471652 5_4:-2800613 None:intergenic
TGCAGGATAGCATTAACAAC+TGG 0.476380 5_4:+2801693 Msa0829770:intron
GGAGGAATTACAATTGTATG+TGG 0.480593 5_4:+2800063 Msa0829770:CDS
TTACATGCGACAGACAGAAA+TGG 0.486623 5_4:-2798188 None:intergenic
TTCTTATGCAGAAATGTGAA+TGG 0.488398 5_4:+2800615 Msa0829770:CDS
GTACCTGACACAGTTGCATC+AGG 0.504773 5_4:+2799118 Msa0829770:CDS
ACTCCTGATGCAACTGTGTC+AGG 0.507213 5_4:-2799121 None:intergenic
TCGGTCTTCTCTTGAAGTAA+CGG 0.507598 5_4:-2802118 None:intergenic
ATGGATAAAGGTCTCAAACT+TGG 0.508812 5_4:-2801021 None:intergenic
GACCTGGAGAACTCCAACAA+GGG 0.512863 5_4:-2801094 None:intergenic
GGTGTAAACCATGAAGTTGT+GGG 0.513168 5_4:-2796621 None:intergenic
ACAGTTGCATCAGGAGTTCA+TGG 0.514390 5_4:+2799127 Msa0829770:CDS
ATGAAGCCTTTACAGTTGAA+AGG 0.521699 5_4:+2798988 Msa0829770:CDS
CTCAGTGACAACATTTCTTG+GGG 0.529695 5_4:+2800572 Msa0829770:CDS
TGGTTCCATGAACAAGACTT+TGG 0.542185 5_4:-2796577 None:intergenic
CACATCTCCAAAGAGATGAA+TGG 0.546684 5_4:-2801061 None:intergenic
TAATATAAACATTATCAAGC+AGG 0.549607 5_4:-2799529 None:intergenic
TTAGGTGCTTACTCATATTG+GGG 0.554059 5_4:+2799800 Msa0829770:CDS
GAGAACTCCAACAAGGGGTG+AGG 0.555912 5_4:-2801088 None:intergenic
ATAAACCATATTCCAGCCGC+TGG 0.562993 5_4:-2801752 None:intergenic
ATGAATGGCAACGGTAGACA+TGG 0.568087 5_4:-2801046 None:intergenic
AAGTTTGAGACCTTTATCCA+TGG 0.571776 5_4:+2801023 Msa0829770:CDS
ATACCATCTGGATATGCACT+TGG 0.571968 5_4:+2798730 Msa0829770:CDS
ACAATTGTATGTGGAATAGT+GGG 0.577169 5_4:+2800072 Msa0829770:CDS
TGGTGTAAACCATGAAGTTG+TGG 0.580859 5_4:-2796622 None:intergenic
CTTCATGGTTTACACCAAAG+AGG 0.583890 5_4:+2796628 Msa0829770:CDS
AAAGTCACGAACGCTTCTAA+CGG 0.584653 5_4:+2799253 Msa0829770:intron
AGGAATATTTGTGCATAGTG+TGG 0.587748 5_4:+2802054 Msa0829770:intron
GCACTTGGCTATGTTTATGG+TGG 0.591399 5_4:+2798745 Msa0829770:CDS
ACTCCAACAAGGGGTGAGGA+AGG 0.592984 5_4:-2801084 None:intergenic
TTTCATTGATGACAATGCCC+CGG 0.593463 5_4:+2798384 Msa0829770:CDS
TGAAGACATACAAAATTCAC+CGG 0.596057 5_4:-2800988 None:intergenic
AAAGCAAACCAGAGAAGCCG+GGG 0.600500 5_4:-2798401 None:intergenic
TAGGAGTTGGATTGTCAATG+TGG 0.604600 5_4:+2798122 Msa0829770:CDS
GGCAACGGTAGACATGGCCA+TGG 0.609428 5_4:-2801040 None:intergenic
GGGGCATTGTCATCAATGAA+AGG 0.612101 5_4:-2798382 None:intergenic
TGACCTGGAGAACTCCAACA+AGG 0.616410 5_4:-2801095 None:intergenic
TAGGCTGGTTGGTGTTGGTG+AGG 0.618424 5_4:+2798336 Msa0829770:intron
ACCTGGAGAACTCCAACAAG+GGG 0.622922 5_4:-2801093 None:intergenic
GGAATCATGGATGACACTAT+GGG 0.627440 5_4:-2796600 None:intergenic
TGTCTACAATATTTATAACA+TGG 0.628485 5_4:+2799832 Msa0829770:CDS
TCCAAAGAGATGAATGGCAA+CGG 0.630729 5_4:-2801055 None:intergenic
TAATTACCTCTGAGCTAGAG+AGG 0.634819 5_4:-2797607 None:intergenic
CAAGGAGCAATAGCTAGCAA+TGG 0.636477 5_4:+2796952 Msa0829770:CDS
AACAACCATATTGTGTCCAG+CGG 0.642017 5_4:+2801736 Msa0829770:CDS
GCATTGTCATCAATGAAAGG+TGG 0.643797 5_4:-2798379 None:intergenic
TAGCCAAGTGCATATCCAGA+TGG 0.650333 5_4:-2798733 None:intergenic
ATCATGGATGACACTATGGG+TGG 0.677731 5_4:-2796597 None:intergenic
ATAGTGGGCACATTGGCTGG+AGG 0.691542 5_4:+2800087 Msa0829770:CDS
ATGTGGAATAGTGGGCACAT+TGG 0.702676 5_4:+2800080 Msa0829770:CDS
GTGTGTATCAGAAAACAACA+TGG 0.704469 5_4:+2798686 Msa0829770:intron
ATAGAAGGAAAGTACCTGAG+TGG 0.719596 5_4:-2800679 None:intergenic
TATTTGCCTCTCTAGCTCAG+AGG 0.719961 5_4:+2797601 Msa0829770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTGTTAAACTATT+TGG + chr5_4:2796927-2796946 Msa0829770:CDS 15.0%
!! GTATATCTAATAATAAGAAT+AGG - chr5_4:2797665-2797684 None:intergenic 15.0%
!! TTATGTAAAGAAATTTACAA+GGG - chr5_4:2798431-2798450 None:intergenic 15.0%
!! ATTATGTAAAGAAATTTACA+AGG - chr5_4:2798432-2798451 None:intergenic 15.0%
!! ATATACAAGAAATCAATAAT+TGG - chr5_4:2799376-2799395 None:intergenic 15.0%
!! TGTATAAAATAAAACATGTT+TGG + chr5_4:2799939-2799958 Msa0829770:intron 15.0%
!! AATCTGAAAAATAATACTTT+GGG - chr5_4:2801548-2801567 None:intergenic 15.0%
!! TCAAAAAAAATTCTAACTTA+TGG - chr5_4:2802016-2802035 None:intergenic 15.0%
!! AAAATGATTTCATGATAAAT+CGG - chr5_4:2802260-2802279 None:intergenic 15.0%
!!! ATAAACGTTTTATCCAATTT+TGG + chr5_4:2796771-2796790 Msa0829770:intron 20.0%
!!! TAAACGTTTTATCCAATTTT+GGG + chr5_4:2796772-2796791 Msa0829770:intron 20.0%
!!! AATGTTCTTTTTTGTTTTGT+AGG + chr5_4:2796884-2796903 Msa0829770:intron 20.0%
!! AAATATATGAATTGTGAGAA+AGG - chr5_4:2798077-2798096 None:intergenic 20.0%
!! AATCATTAGTACTAAACTTA+TGG + chr5_4:2798269-2798288 Msa0829770:intron 20.0%
!! GAAATCAATAATTGGAAAAA+TGG - chr5_4:2799368-2799387 None:intergenic 20.0%
!! GTCTAACATTTATAATTTAG+TGG + chr5_4:2799402-2799421 Msa0829770:intron 20.0%
!! TAATATAAACATTATCAAGC+AGG - chr5_4:2799532-2799551 None:intergenic 20.0%
!! GTTTATATTATCAATGTTCT+AGG + chr5_4:2799542-2799561 Msa0829770:CDS 20.0%
!! ACAAATAGATAATTAAGTCA+CGG - chr5_4:2799755-2799774 None:intergenic 20.0%
!! TGACTTAATTATCTATTTGT+AGG + chr5_4:2799755-2799774 Msa0829770:intron 20.0%
!! TAAATATTGTAGACAACTTT+GGG - chr5_4:2799827-2799846 None:intergenic 20.0%
!! ATAAATATTGTAGACAACTT+TGG - chr5_4:2799828-2799847 None:intergenic 20.0%
!! TGTCTACAATATTTATAACA+TGG + chr5_4:2799832-2799851 Msa0829770:CDS 20.0%
!!! AAAGGTATATTAATGCATAA+GGG - chr5_4:2799882-2799901 None:intergenic 20.0%
!!! TAAAGGTATATTAATGCATA+AGG - chr5_4:2799883-2799902 None:intergenic 20.0%
!! TTAATATACCTTTACTATCA+TGG + chr5_4:2799889-2799908 Msa0829770:intron 20.0%
!!! TATTACTTTCATACCTTTTT+AGG + chr5_4:2800186-2800205 Msa0829770:intron 20.0%
!!! ATTTAAGATTTCTTTACTTG+AGG + chr5_4:2800326-2800345 Msa0829770:intron 20.0%
!! TAAGTTTACAATGTAAAATC+AGG + chr5_4:2801348-2801367 Msa0829770:intron 20.0%
!! GAATCTGAAAAATAATACTT+TGG - chr5_4:2801549-2801568 None:intergenic 20.0%
!! AAAAAAATTCTAACTTATGG+AGG - chr5_4:2802013-2802032 None:intergenic 20.0%
!! ATATGAATTTCATAGGAAAT+GGG - chr5_4:2802300-2802319 None:intergenic 20.0%
!!! TTGAAAAACTTTGAGTTGAA+TGG - chr5_4:2796478-2796497 None:intergenic 25.0%
! TTAGTTATACAATACCTCTT+TGG - chr5_4:2796645-2796664 None:intergenic 25.0%
!! TTCATTCTTCTTTGCATTTT+TGG + chr5_4:2796734-2796753 Msa0829770:intron 25.0%
! AATTGAAACAAACCCAAAAT+TGG - chr5_4:2796787-2796806 None:intergenic 25.0%
!!! TTTTGGGTTTGTTTCAATTT+TGG + chr5_4:2796788-2796807 Msa0829770:intron 25.0%
!!! TTTTTGTTTTGTAGGTTACT+TGG + chr5_4:2796892-2796911 Msa0829770:intron 25.0%
! TTGTTAAACTATTTGGATCA+AGG + chr5_4:2796934-2796953 Msa0829770:CDS 25.0%
! AACAAGAAATCAAGAACATA+GGG + chr5_4:2797035-2797054 Msa0829770:intron 25.0%
! CGTATAAATTCAATGCTTTA+AGG + chr5_4:2797268-2797287 Msa0829770:intron 25.0%
!!! AATTCAATGCTTTAAGGTTT+TGG + chr5_4:2797274-2797293 Msa0829770:intron 25.0%
!!! ATTCAATGCTTTAAGGTTTT+GGG + chr5_4:2797275-2797294 Msa0829770:intron 25.0%
! ATGTTACACTATCAATGTTA+GGG - chr5_4:2797441-2797460 None:intergenic 25.0%
!!! AACTTGAACAATTTTGAAGA+TGG + chr5_4:2797531-2797550 Msa0829770:CDS 25.0%
!!! AGTTTTATCATCTGCTTTTA+TGG + chr5_4:2797554-2797573 Msa0829770:CDS 25.0%
! AGAATAGGTTTCATATTGAT+TGG - chr5_4:2797650-2797669 None:intergenic 25.0%
! ATTTGCAACTTATCTTATGA+AGG - chr5_4:2797719-2797738 None:intergenic 25.0%
! AATTTGATATCATTGCTCTA+TGG - chr5_4:2797780-2797799 None:intergenic 25.0%
! TGAAATTGAATGTGTATTTG+AGG + chr5_4:2797820-2797839 Msa0829770:intron 25.0%
! AGCAAAATTACTACAATAGT+TGG + chr5_4:2797906-2797925 Msa0829770:intron 25.0%
! GTAAATCCATTTAGACTTAT+AGG + chr5_4:2798103-2798122 Msa0829770:CDS 25.0%
! TTGAAAATCTAATCAAGCTT+AGG + chr5_4:2798457-2798476 Msa0829770:intron 25.0%
! TAGTATTTAGTATTAGACAG+TGG - chr5_4:2798799-2798818 None:intergenic 25.0%
! TACTAAATATCCATATGTAC+TGG + chr5_4:2798814-2798833 Msa0829770:intron 25.0%
!! TAACAGATTGGAAGTAATTT+TGG + chr5_4:2798901-2798920 Msa0829770:intron 25.0%
! AAAAATCCTGAAATAGCAAA+TGG - chr5_4:2798967-2798986 None:intergenic 25.0%
!! CAAACAAGTGAATTTTGTTA+AGG - chr5_4:2799229-2799248 None:intergenic 25.0%
! GGAAAAATGGTTATTTAAGA+AGG - chr5_4:2799355-2799374 None:intergenic 25.0%
!!! ATCTGACAGATTCTTATTTT+AGG + chr5_4:2799444-2799463 Msa0829770:intron 25.0%
! TTTACAATATGAAGTTCACA+GGG - chr5_4:2799675-2799694 None:intergenic 25.0%
!! TTTTACAATATGAAGTTCAC+AGG - chr5_4:2799676-2799695 None:intergenic 25.0%
! AAATAGATAATTAAGTCACG+GGG - chr5_4:2799753-2799772 None:intergenic 25.0%
! CAAATAGATAATTAAGTCAC+GGG - chr5_4:2799754-2799773 None:intergenic 25.0%
! ACAATATTTATAACATGGTG+AGG + chr5_4:2799837-2799856 Msa0829770:intron 25.0%
!! ATGTTAAACTTGGCTTATTT+TGG + chr5_4:2800016-2800035 Msa0829770:intron 25.0%
!! TTATCAAATGCATTTAAGGT+CGG + chr5_4:2800138-2800157 Msa0829770:intron 25.0%
! AAGATACTATGAACCTAAAA+AGG - chr5_4:2800202-2800221 None:intergenic 25.0%
!! ATAGGGTTGTAATTTGTAAA+CGG + chr5_4:2800277-2800296 Msa0829770:intron 25.0%
!! TAGTTAAAAGTTTAGCTTAC+TGG - chr5_4:2800498-2800517 None:intergenic 25.0%
!! TTTCTTGTTCTTTTCTCTAT+TGG + chr5_4:2800639-2800658 Msa0829770:CDS 25.0%
!!! TAGGAATTTTCAAGATCAAA+TGG - chr5_4:2800807-2800826 None:intergenic 25.0%
! TTCTTGTCAAGAATTTAACT+AGG - chr5_4:2800826-2800845 None:intergenic 25.0%
! AGTAAAATAACCTCTACATT+TGG + chr5_4:2800862-2800881 Msa0829770:intron 25.0%
! ATCTAAATTTCCAAATGTAG+AGG - chr5_4:2800875-2800894 None:intergenic 25.0%
! AAGAACTAAATCTCATTGTA+CGG + chr5_4:2800910-2800929 Msa0829770:intron 25.0%
! TGAATATTTACATTTGCTTG+CGG + chr5_4:2800950-2800969 Msa0829770:intron 25.0%
! CAATGATTAAAAACTGCAAA+TGG - chr5_4:2801165-2801184 None:intergenic 25.0%
! TAATTTCCAAAACAAAGGTA+TGG - chr5_4:2801188-2801207 None:intergenic 25.0%
! CAACATAATTTCCAAAACAA+AGG - chr5_4:2801193-2801212 None:intergenic 25.0%
!!! CACTTTAAAGTTGTTGATTT+CGG + chr5_4:2801245-2801264 Msa0829770:intron 25.0%
! AAACTATACATCGTTTGTAT+TGG + chr5_4:2801427-2801446 Msa0829770:intron 25.0%
! TGTATGAAGTAAACTATGTT+AGG - chr5_4:2801477-2801496 None:intergenic 25.0%
! TAGTTTACTTCATACATCTA+TGG + chr5_4:2801481-2801500 Msa0829770:intron 25.0%
! ATGAGATATTGATGTTTCTT+CGG - chr5_4:2802140-2802159 None:intergenic 25.0%
! GATATGAATTTCATAGGAAA+TGG - chr5_4:2802301-2802320 None:intergenic 25.0%
! TCCTATGAAATTCATATCAA+TGG + chr5_4:2802303-2802322 Msa0829770:three_prime_UTR 25.0%
! TCCATTGATATGAATTTCAT+AGG - chr5_4:2802307-2802326 None:intergenic 25.0%
ACATCTAGTGTTAGATAGAA+AGG + chr5_4:2796506-2796525 Msa0829770:five_prime_UTR 30.0%
!!! TGCATTTTTGGTATATCATG+TGG + chr5_4:2796746-2796765 Msa0829770:intron 30.0%
!!! GCATTTTTGGTATATCATGT+GGG + chr5_4:2796747-2796766 Msa0829770:intron 30.0%
!!! CATTTTTGGTATATCATGTG+GGG + chr5_4:2796748-2796767 Msa0829770:intron 30.0%
!! TTTCTTGTTCTGAGAAAAGA+AGG - chr5_4:2797024-2797043 None:intergenic 30.0%
GAACAAGAAATCAAGAACAT+AGG + chr5_4:2797034-2797053 Msa0829770:intron 30.0%
AACAACCTAGTGATCATATT+TGG + chr5_4:2797076-2797095 Msa0829770:intron 30.0%
CTAGTGATCATATTTGGTTA+CGG + chr5_4:2797082-2797101 Msa0829770:intron 30.0%
TAGTGATCATATTTGGTTAC+GGG + chr5_4:2797083-2797102 Msa0829770:intron 30.0%
TACTTAGTTGGACGAAAAAT+AGG - chr5_4:2797109-2797128 None:intergenic 30.0%
TATCTTCCGTCCAATTATAA+TGG + chr5_4:2797391-2797410 Msa0829770:intron 30.0%
ATCTTCCGTCCAATTATAAT+GGG + chr5_4:2797392-2797411 Msa0829770:intron 30.0%
CATGTTACACTATCAATGTT+AGG - chr5_4:2797442-2797461 None:intergenic 30.0%
!! TTATCATCTGCTTTTATGGT+TGG + chr5_4:2797558-2797577 Msa0829770:CDS 30.0%
! CATATTGATTGGAACATGAA+TGG - chr5_4:2797639-2797658 None:intergenic 30.0%
CATTCAATTTCACATCAAGA+AGG - chr5_4:2797812-2797831 None:intergenic 30.0%
ATGTAAGAACTTCAGTGTAA+TGG - chr5_4:2797955-2797974 None:intergenic 30.0%
GAAAGAAAAACCACAAAAGA+AGG - chr5_4:2798158-2798177 None:intergenic 30.0%
! GTGGTTTTTCTTTCAATTTC+TGG + chr5_4:2798164-2798183 Msa0829770:CDS 30.0%
ATGCCTTCATTATTCTGTAT+AGG + chr5_4:2798317-2798336 Msa0829770:intron 30.0%
TTGAAATGAACGAAGCAAAA+TGG - chr5_4:2798588-2798607 None:intergenic 30.0%
! TTTTACATGTGTATACCATC+TGG + chr5_4:2798718-2798737 Msa0829770:CDS 30.0%
! GATTCTTTTTCCAGTACATA+TGG - chr5_4:2798827-2798846 None:intergenic 30.0%
CAATCTGTTAATACACACAA+AGG - chr5_4:2798891-2798910 None:intergenic 30.0%
CTTTGTGTGTATTAACAGAT+TGG + chr5_4:2798889-2798908 Msa0829770:intron 30.0%
!! AGATTGGAAGTAATTTTGGT+TGG + chr5_4:2798905-2798924 Msa0829770:intron 30.0%
! GGTACAGATTTTTCTTGAAT+TGG + chr5_4:2799009-2799028 Msa0829770:intron 30.0%
!! TGTTCCTGTTGATTTGATAA+AGG + chr5_4:2799090-2799109 Msa0829770:CDS 30.0%
TTAAACCAGAAATGAGTATC+AGG - chr5_4:2799175-2799194 None:intergenic 30.0%
! AGATGAGTCATTGTCTTTTA+AGG + chr5_4:2799279-2799298 Msa0829770:CDS 30.0%
! GTTTTTGTTCTAACTTGGAT+TGG - chr5_4:2799333-2799352 None:intergenic 30.0%
! AGAAGGTTTTTGTTCTAACT+TGG - chr5_4:2799338-2799357 None:intergenic 30.0%
ATTAATGCATAAGGGATCAT+TGG - chr5_4:2799874-2799893 None:intergenic 30.0%
ATGAACAACCATGATAGTAA+AGG - chr5_4:2799900-2799919 None:intergenic 30.0%
ATAAAACATGTTTGGCATTC+TGG + chr5_4:2799947-2799966 Msa0829770:intron 30.0%
! ACTGATTCAGATTTGGTATT+TGG + chr5_4:2800042-2800061 Msa0829770:CDS 30.0%
TACAATTGTATGTGGAATAG+TGG + chr5_4:2800071-2800090 Msa0829770:CDS 30.0%
ACAATTGTATGTGGAATAGT+GGG + chr5_4:2800072-2800091 Msa0829770:CDS 30.0%
CACCTTATCAAATGCATTTA+AGG + chr5_4:2800134-2800153 Msa0829770:CDS 30.0%
GACCTTAAATGCATTTGATA+AGG - chr5_4:2800139-2800158 None:intergenic 30.0%
GAACAATAAATTGAGCATCA+TGG + chr5_4:2800382-2800401 Msa0829770:intron 30.0%
TGGTTACAGTTGTATGAAAT+AGG + chr5_4:2800402-2800421 Msa0829770:intron 30.0%
TATTAGGAGGAAAATCTCTT+TGG - chr5_4:2800442-2800461 None:intergenic 30.0%
! TTACAAGTCGACTCAATATT+AGG - chr5_4:2800458-2800477 None:intergenic 30.0%
!! AATATTGAGTCGACTTGTAA+CGG + chr5_4:2800458-2800477 Msa0829770:intron 30.0%
ATTCACATTTCTGCATAAGA+AGG - chr5_4:2800616-2800635 None:intergenic 30.0%
TTCTTATGCAGAAATGTGAA+TGG + chr5_4:2800615-2800634 Msa0829770:CDS 30.0%
!! GTACAATGAGATTTAGTTCT+TGG - chr5_4:2800911-2800930 None:intergenic 30.0%
TGAAGACATACAAAATTCAC+CGG - chr5_4:2800991-2801010 None:intergenic 30.0%
TTTGGAAATTATGTTGCCAA+CGG + chr5_4:2801197-2801216 Msa0829770:intron 30.0%
! GTTGATTTCGGAAAATAAAG+TGG + chr5_4:2801257-2801276 Msa0829770:intron 30.0%
!! TAATTTTAGCCATCAATGTG+TGG - chr5_4:2801296-2801315 None:intergenic 30.0%
! ACACATTGATGGCTAAAATT+AGG + chr5_4:2801295-2801314 Msa0829770:intron 30.0%
! CTATGGTCATCATAGATTTT+AGG + chr5_4:2801498-2801517 Msa0829770:intron 30.0%
! CACAATACATTTTCTGTGAT+CGG - chr5_4:2801649-2801668 None:intergenic 30.0%
!!! TGGAATTTTTTGACACACTA+TGG + chr5_4:2801667-2801686 Msa0829770:intron 30.0%
!! TGAAAGCTTTTGAGAAAATG+TGG - chr5_4:2801943-2801962 None:intergenic 30.0%
TAACTTATGGAGGACTTATT+TGG - chr5_4:2802003-2802022 None:intergenic 30.0%
! CATTTTTGTCAGTTGAGTTA+GGG - chr5_4:2802237-2802256 None:intergenic 30.0%
!! AACATCCAAAGTCTTGTTCA+TGG + chr5_4:2796572-2796591 Msa0829770:CDS 35.0%
TAAGCAACACTAACAGAAGA+GGG - chr5_4:2796863-2796882 None:intergenic 35.0%
ATAAGCAACACTAACAGAAG+AGG - chr5_4:2796864-2796883 None:intergenic 35.0%
! ATAGCTAGCAATGGTGTTAA+TGG + chr5_4:2796961-2796980 Msa0829770:CDS 35.0%
! AATGGTGTTAATGGAAGTAC+AGG + chr5_4:2796970-2796989 Msa0829770:CDS 35.0%
CGTAACCAAATATGATCACT+AGG - chr5_4:2797084-2797103 None:intergenic 35.0%
! GAGCATTTGAGTTCAAATCT+GGG + chr5_4:2797155-2797174 Msa0829770:intron 35.0%
TACGACCTCTCACTTATAAA+GGG - chr5_4:2797252-2797271 None:intergenic 35.0%
ATACGACCTCTCACTTATAA+AGG - chr5_4:2797253-2797272 None:intergenic 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG + chr5_4:2797286-2797305 Msa0829770:intron 35.0%
ATAAGTAAAGTCTAGCCAAG+TGG - chr5_4:2797374-2797393 None:intergenic 35.0%
ACATCAGCACCCATTATAAT+TGG - chr5_4:2797404-2797423 None:intergenic 35.0%
! ATATTTTTCCTGTTGTGTGC+AGG + chr5_4:2797499-2797518 Msa0829770:intron 35.0%
! TATTTTTCCTGTTGTGTGCA+GGG + chr5_4:2797500-2797519 Msa0829770:intron 35.0%
TTGATATCATTGCTCTATGG+TGG - chr5_4:2797777-2797796 None:intergenic 35.0%
! TGTATTTGAGGCAATCTTCT+TGG + chr5_4:2797832-2797851 Msa0829770:intron 35.0%
CTGAAGTTCTTACATCTGAT+AGG + chr5_4:2797960-2797979 Msa0829770:intron 35.0%
GCACATACAAGGAAAAAGAT+CGG - chr5_4:2798011-2798030 None:intergenic 35.0%
GTGAGAAAGGATTCTTATGT+CGG - chr5_4:2798064-2798083 None:intergenic 35.0%
CCAACTCCTATAAGTCTAAA+TGG - chr5_4:2798112-2798131 None:intergenic 35.0%
CCATTTAGACTTATAGGAGT+TGG + chr5_4:2798109-2798128 Msa0829770:CDS 35.0%
CAGCCTATACAGAATAATGA+AGG - chr5_4:2798323-2798342 None:intergenic 35.0%
CTTCATTATTCTGTATAGGC+TGG + chr5_4:2798321-2798340 Msa0829770:intron 35.0%
ATTATTCTGTATAGGCTGGT+TGG + chr5_4:2798325-2798344 Msa0829770:intron 35.0%
CAACAATTGACAAATGGCAT+TGG - chr5_4:2798615-2798634 None:intergenic 35.0%
CATAAAGAAGAAAGAACAGC+AGG - chr5_4:2798638-2798657 None:intergenic 35.0%
CTGCTGTTCTTTCTTCTTTA+TGG + chr5_4:2798636-2798655 Msa0829770:intron 35.0%
CTGTTCTTTCTTCTTTATGG+TGG + chr5_4:2798639-2798658 Msa0829770:intron 35.0%
GTGTGTATCAGAAAACAACA+TGG + chr5_4:2798686-2798705 Msa0829770:intron 35.0%
TATGCACTTGGCTATGTTTA+TGG + chr5_4:2798742-2798761 Msa0829770:CDS 35.0%
TTTAGTATTAGACAGTGGCA+GGG - chr5_4:2798794-2798813 None:intergenic 35.0%
ATTTAGTATTAGACAGTGGC+AGG - chr5_4:2798795-2798814 None:intergenic 35.0%
!! ATGCTTCCATTTGCTATTTC+AGG + chr5_4:2798958-2798977 Msa0829770:CDS 35.0%
ATGAAGCCTTTACAGTTGAA+AGG + chr5_4:2798988-2799007 Msa0829770:CDS 35.0%
TCTGTACCTTTCAACTGTAA+AGG - chr5_4:2798997-2799016 None:intergenic 35.0%
ACCGACGGAAAACAATAATA+GGG - chr5_4:2799047-2799066 None:intergenic 35.0%
TACCGACGGAAAACAATAAT+AGG - chr5_4:2799048-2799067 None:intergenic 35.0%
AAATCAACAGGAACAAAACC+TGG - chr5_4:2799085-2799104 None:intergenic 35.0%
TGTGCCTTTATCAAATCAAC+AGG - chr5_4:2799097-2799116 None:intergenic 35.0%
! ATTAGCCTGATACTCATTTC+TGG + chr5_4:2799167-2799186 Msa0829770:intron 35.0%
ATAGCGTACAACTTTGTCTT+AGG + chr5_4:2799782-2799801 Msa0829770:CDS 35.0%
TCTTAGGTGCTTACTCATAT+TGG + chr5_4:2799798-2799817 Msa0829770:CDS 35.0%
CTTAGGTGCTTACTCATATT+GGG + chr5_4:2799799-2799818 Msa0829770:CDS 35.0%
TTAGGTGCTTACTCATATTG+GGG + chr5_4:2799800-2799819 Msa0829770:CDS 35.0%
TGCTGTTGTCATGTTAAACT+TGG + chr5_4:2800006-2800025 Msa0829770:intron 35.0%
! GATTCAGATTTGGTATTTGG+AGG + chr5_4:2800045-2800064 Msa0829770:CDS 35.0%
GGAGGAATTACAATTGTATG+TGG + chr5_4:2800063-2800082 Msa0829770:CDS 35.0%
!! ACAGCTGTGGTCTTATTTAT+AGG + chr5_4:2800259-2800278 Msa0829770:intron 35.0%
!! CAGCTGTGGTCTTATTTATA+GGG + chr5_4:2800260-2800279 Msa0829770:intron 35.0%
ACTTGTAACGGTCTAGTAAA+TGG + chr5_4:2800470-2800489 Msa0829770:intron 35.0%
TCTCAGTGACAACATTTCTT+GGG + chr5_4:2800571-2800590 Msa0829770:CDS 35.0%
!! CAATGAGATTTAGTTCTTGG+AGG - chr5_4:2800908-2800927 None:intergenic 35.0%
ATGGATAAAGGTCTCAAACT+TGG - chr5_4:2801024-2801043 None:intergenic 35.0%
! AAGTTTGAGACCTTTATCCA+TGG + chr5_4:2801023-2801042 Msa0829770:CDS 35.0%
!! TCATTGCCATACCTTTGTTT+TGG + chr5_4:2801179-2801198 Msa0829770:intron 35.0%
! TCTGTGATCGGTAATTTTCT+CGG - chr5_4:2801637-2801656 None:intergenic 35.0%
CGATCACAGAAAATGTATTG+TGG + chr5_4:2801647-2801666 Msa0829770:intron 35.0%
TTTGACATGTCACTATTGCA+AGG + chr5_4:2801796-2801815 Msa0829770:intron 35.0%
TTGACATGTCACTATTGCAA+GGG + chr5_4:2801797-2801816 Msa0829770:intron 35.0%
TCAAACCTAACCTCTCAAAT+TGG + chr5_4:2801894-2801913 Msa0829770:intron 35.0%
!! AAGCTTTTGAGAAAATGTGG+TGG - chr5_4:2801940-2801959 None:intergenic 35.0%
! TTGGTGACAATGTATAGAAG+AGG - chr5_4:2801984-2802003 None:intergenic 35.0%
GACATCTGATGTTAATGTGT+AGG + chr5_4:2802034-2802053 Msa0829770:intron 35.0%
AGGAATATTTGTGCATAGTG+TGG + chr5_4:2802054-2802073 Msa0829770:intron 35.0%
! GCATTTTTGTCAGTTGAGTT+AGG - chr5_4:2802238-2802257 None:intergenic 35.0%
TGGTTCCATGAACAAGACTT+TGG - chr5_4:2796580-2796599 None:intergenic 40.0%
GGAATCATGGATGACACTAT+GGG - chr5_4:2796603-2796622 None:intergenic 40.0%
GGTGTAAACCATGAAGTTGT+GGG - chr5_4:2796624-2796643 None:intergenic 40.0%
TGGTGTAAACCATGAAGTTG+TGG - chr5_4:2796625-2796644 None:intergenic 40.0%
CTTCATGGTTTACACCAAAG+AGG + chr5_4:2796628-2796647 Msa0829770:CDS 40.0%
!! AAGAACATAGGGTGTTGTCA+TGG + chr5_4:2797046-2797065 Msa0829770:intron 40.0%
TTTCGTCCAACTAAGTAGCT+AGG + chr5_4:2797112-2797131 Msa0829770:intron 40.0%
! GGAGCATTTGAGTTCAAATC+TGG + chr5_4:2797154-2797173 Msa0829770:intron 40.0%
! CATTTGAGTTCAAATCTGGG+TGG + chr5_4:2797158-2797177 Msa0829770:intron 40.0%
TTGAGCCCTTTATAAGTGAG+AGG + chr5_4:2797244-2797263 Msa0829770:intron 40.0%
CAGCACCCATTATAATTGGA+CGG - chr5_4:2797400-2797419 None:intergenic 40.0%
! ATTTTTCCTGTTGTGTGCAG+GGG + chr5_4:2797501-2797520 Msa0829770:intron 40.0%
! TTTTATGGTTGGACTTCTCG+TGG + chr5_4:2797569-2797588 Msa0829770:CDS 40.0%
TGAGCTAGAGAGGCAAATAT+TGG - chr5_4:2797600-2797619 None:intergenic 40.0%
TAATTACCTCTGAGCTAGAG+AGG - chr5_4:2797610-2797629 None:intergenic 40.0%
!! GAACTTCAGTGTAATGGACA+AGG - chr5_4:2797949-2797968 None:intergenic 40.0%
TACAACATGCAGCACATACA+AGG - chr5_4:2798022-2798041 None:intergenic 40.0%
TAGGAGTTGGATTGTCAATG+TGG + chr5_4:2798122-2798141 Msa0829770:CDS 40.0%
TTACATGCGACAGACAGAAA+TGG - chr5_4:2798191-2798210 None:intergenic 40.0%
GCATTGTCATCAATGAAAGG+TGG - chr5_4:2798382-2798401 None:intergenic 40.0%
! TTTCATTGATGACAATGCCC+CGG + chr5_4:2798384-2798403 Msa0829770:CDS 40.0%
AAAAAGCAAACCAGAGAAGC+CGG - chr5_4:2798406-2798425 None:intergenic 40.0%
AGCAGGCAACAATTGACAAA+TGG - chr5_4:2798621-2798640 None:intergenic 40.0%
ATACCATCTGGATATGCACT+TGG + chr5_4:2798730-2798749 Msa0829770:CDS 40.0%
TGGCTATGTTTATGGTGGTT+TGG + chr5_4:2798750-2798769 Msa0829770:CDS 40.0%
!! TGGTTTGGTAAGTCTCTATC+TGG + chr5_4:2798765-2798784 Msa0829770:intron 40.0%
CCGACGGAAAACAATAATAG+GGG - chr5_4:2799046-2799065 None:intergenic 40.0%
! CCCCTATTATTGTTTTCCGT+CGG + chr5_4:2799043-2799062 Msa0829770:intron 40.0%
! ATCCAGAACTAGTTTACCGA+CGG - chr5_4:2799062-2799081 None:intergenic 40.0%
AAAGTCACGAACGCTTCTAA+CGG + chr5_4:2799253-2799272 Msa0829770:intron 40.0%
! TTGGCAGACTGATTCAGATT+TGG + chr5_4:2800035-2800054 Msa0829770:intron 40.0%
TTGTAAACGGTCTTCTGATC+TGG + chr5_4:2800290-2800309 Msa0829770:intron 40.0%
! CAAGTCGACTCAATATTAGG+AGG - chr5_4:2800455-2800474 None:intergenic 40.0%
CTCTCAGTGACAACATTTCT+TGG + chr5_4:2800570-2800589 Msa0829770:CDS 40.0%
CTCAGTGACAACATTTCTTG+GGG + chr5_4:2800572-2800591 Msa0829770:CDS 40.0%
!!! ACTTCTTGTTTTTGCCACTC+AGG + chr5_4:2800665-2800684 Msa0829770:CDS 40.0%
!! ATAGAAGGAAAGTACCTGAG+TGG - chr5_4:2800682-2800701 None:intergenic 40.0%
! TTGCTTGCGGTTTTCTTTTC+AGG + chr5_4:2800963-2800982 Msa0829770:intron 40.0%
! TGCTTGCGGTTTTCTTTTCA+GGG + chr5_4:2800964-2800983 Msa0829770:intron 40.0%
TCCAAAGAGATGAATGGCAA+CGG - chr5_4:2801058-2801077 None:intergenic 40.0%
CACATCTCCAAAGAGATGAA+TGG - chr5_4:2801064-2801083 None:intergenic 40.0%
!!! GTTGCTTTTCCACACATTGA+TGG + chr5_4:2801284-2801303 Msa0829770:intron 40.0%
ATGTTAGGCTTACAGCTTTC+AGG - chr5_4:2801462-2801481 None:intergenic 40.0%
ATGCATTACTTGCAAAGCAG+AGG + chr5_4:2801597-2801616 Msa0829770:intron 40.0%
TGCATTACTTGCAAAGCAGA+GGG + chr5_4:2801598-2801617 Msa0829770:intron 40.0%
! TTGACACACTATGGTAATGC+AGG + chr5_4:2801676-2801695 Msa0829770:intron 40.0%
TGCAGGATAGCATTAACAAC+TGG + chr5_4:2801693-2801712 Msa0829770:intron 40.0%
CTGGACACAATATGGTTGTT+AGG - chr5_4:2801736-2801755 None:intergenic 40.0%
AACAACCATATTGTGTCCAG+CGG + chr5_4:2801736-2801755 Msa0829770:CDS 40.0%
TTGAGAGGTTAGGTTTGACT+TGG - chr5_4:2801892-2801911 None:intergenic 40.0%
! CTTTAGAGGACCAATTTGAG+AGG - chr5_4:2801907-2801926 None:intergenic 40.0%
TCGGTCTTCTCTTGAAGTAA+CGG - chr5_4:2802121-2802140 None:intergenic 40.0%
ATCATGGATGACACTATGGG+TGG - chr5_4:2796600-2796619 None:intergenic 45.0%
GGGAATCATGGATGACACTA+TGG - chr5_4:2796604-2796623 None:intergenic 45.0%
CCATGAAGTTGTGGGAATCA+TGG - chr5_4:2796616-2796635 None:intergenic 45.0%
CCATGATTCCCACAACTTCA+TGG + chr5_4:2796613-2796632 Msa0829770:CDS 45.0%
CTCCTATTTCCATCCATGCT+GGG + chr5_4:2796689-2796708 Msa0829770:intron 45.0%
TACCCAGCATGGATGGAAAT+AGG - chr5_4:2796694-2796713 None:intergenic 45.0%
! TGTTACTTACCCAGCATGGA+TGG - chr5_4:2796701-2796720 None:intergenic 45.0%
! CCTTTGTTACTTACCCAGCA+TGG - chr5_4:2796705-2796724 None:intergenic 45.0%
CCATGCTGGGTAAGTAACAA+AGG + chr5_4:2796702-2796721 Msa0829770:intron 45.0%
CAAGGAGCAATAGCTAGCAA+TGG + chr5_4:2796952-2796971 Msa0829770:CDS 45.0%
CTTGAGCCTAGCTACTTAGT+TGG - chr5_4:2797121-2797140 None:intergenic 45.0%
ACTAAGTAGCTAGGCTCAAG+TGG + chr5_4:2797121-2797140 Msa0829770:intron 45.0%
AGGCTCAAGTGGTTCACATT+CGG + chr5_4:2797132-2797151 Msa0829770:intron 45.0%
CACACTGCTTAGAAAAGTCG+AGG + chr5_4:2797221-2797240 Msa0829770:intron 45.0%
TGGTGTTCAACTCACTTGTG+TGG + chr5_4:2797306-2797325 Msa0829770:intron 45.0%
!! AGGGGAGTATCATCCACATT+AGG - chr5_4:2797342-2797361 None:intergenic 45.0%
GTAAAGTCTAGCCAAGTGGT+GGG - chr5_4:2797370-2797389 None:intergenic 45.0%
AGTAAAGTCTAGCCAAGTGG+TGG - chr5_4:2797371-2797390 None:intergenic 45.0%
! TTTTTCCTGTTGTGTGCAGG+GGG + chr5_4:2797502-2797521 Msa0829770:intron 45.0%
! TATTTGCCTCTCTAGCTCAG+AGG + chr5_4:2797601-2797620 Msa0829770:CDS 45.0%
! ACTCTTGCGACCTTCTTTTG+TGG + chr5_4:2798145-2798164 Msa0829770:CDS 45.0%
TTCTGTCTGTCGCATGTAAG+TGG + chr5_4:2798192-2798211 Msa0829770:intron 45.0%
!! GGGGCATTGTCATCAATGAA+AGG - chr5_4:2798385-2798404 None:intergenic 45.0%
AAAAGCAAACCAGAGAAGCC+GGG - chr5_4:2798405-2798424 None:intergenic 45.0%
TAGCCAAGTGCATATCCAGA+TGG - chr5_4:2798736-2798755 None:intergenic 45.0%
GCACTTGGCTATGTTTATGG+TGG + chr5_4:2798745-2798764 Msa0829770:CDS 45.0%
TTGGTTGGCGTTATGCATTC+TGG + chr5_4:2798920-2798939 Msa0829770:CDS 45.0%
TGGTTGGCGTTATGCATTCT+GGG + chr5_4:2798921-2798940 Msa0829770:CDS 45.0%
TTCCGTCGGTAAACTAGTTC+TGG + chr5_4:2799057-2799076 Msa0829770:intron 45.0%
!! GGTAAACTAGTTCTGGATCC+AGG + chr5_4:2799064-2799083 Msa0829770:intron 45.0%
ACAGTTGCATCAGGAGTTCA+TGG + chr5_4:2799127-2799146 Msa0829770:CDS 45.0%
TGATGCAGACAGTAGATCAG+TGG - chr5_4:2799580-2799599 None:intergenic 45.0%
!! ATGTGGAATAGTGGGCACAT+TGG + chr5_4:2800080-2800099 Msa0829770:CDS 45.0%
! ATTGGCTGGAGGATTTGTTC+TGG + chr5_4:2800098-2800117 Msa0829770:CDS 45.0%
CTGGGCGCACATAATTCTTA+TGG - chr5_4:2800228-2800247 None:intergenic 45.0%
CAGCTGTTTAGTGTGGAACT+GGG - chr5_4:2800246-2800265 None:intergenic 45.0%
ACAGCTGTTTAGTGTGGAAC+TGG - chr5_4:2800247-2800266 None:intergenic 45.0%
AGTTCCACACTAAACAGCTG+TGG + chr5_4:2800246-2800265 Msa0829770:intron 45.0%
AAGACCACAGCTGTTTAGTG+TGG - chr5_4:2800253-2800272 None:intergenic 45.0%
!! CTTGGGGCAGCATTTTGTTT+TGG + chr5_4:2800588-2800607 Msa0829770:CDS 45.0%
AGGTACTTTCCTTCTATGCG+AGG + chr5_4:2800685-2800704 Msa0829770:intron 45.0%
AGAGATCTTCCTCGCATAGA+AGG - chr5_4:2800697-2800716 None:intergenic 45.0%
GTAGACATGGCCATGGATAA+AGG - chr5_4:2801036-2801055 None:intergenic 45.0%
ATGAATGGCAACGGTAGACA+TGG - chr5_4:2801049-2801068 None:intergenic 45.0%
ACCGTTGCCATTCATCTCTT+TGG + chr5_4:2801054-2801073 Msa0829770:CDS 45.0%
TGTGTGTGTCTGTGAATGTG+GGG - chr5_4:2801142-2801161 None:intergenic 45.0%
GTGTGTGTGTCTGTGAATGT+GGG - chr5_4:2801143-2801162 None:intergenic 45.0%
CCTGTGTTTACTAGAACCGT+TGG - chr5_4:2801216-2801235 None:intergenic 45.0%
! CCAACGGTTCTAGTAAACAC+AGG + chr5_4:2801213-2801232 Msa0829770:intron 45.0%
ATTACTTGCAAAGCAGAGGG+AGG + chr5_4:2801601-2801620 Msa0829770:intron 45.0%
TTACTTGCAAAGCAGAGGGA+GGG + chr5_4:2801602-2801621 Msa0829770:intron 45.0%
ATAAACCATATTCCAGCCGC+TGG - chr5_4:2801755-2801774 None:intergenic 45.0%
GCGGCTGGAATATGGTTTAT+CGG + chr5_4:2801755-2801774 Msa0829770:CDS 45.0%
GAGGACCAATTTGAGAGGTT+AGG - chr5_4:2801902-2801921 None:intergenic 45.0%
CCAGCATGGATGGAAATAGG+AGG - chr5_4:2796691-2796710 None:intergenic 50.0%
CCTCCTATTTCCATCCATGC+TGG + chr5_4:2796688-2796707 Msa0829770:intron 50.0%
GGCTCAAGTGGTTCACATTC+GGG + chr5_4:2797133-2797152 Msa0829770:intron 50.0%
AATCTGGGTGGAGCAATCCT+TGG + chr5_4:2797170-2797189 Msa0829770:intron 50.0%
TCACGTGCTACACAACACCA+AGG - chr5_4:2797190-2797209 None:intergenic 50.0%
! TGGTTGCTCTGAGCCTAATG+TGG + chr5_4:2797326-2797345 Msa0829770:intron 50.0%
! TTTTCCTGTTGTGTGCAGGG+GGG + chr5_4:2797503-2797522 Msa0829770:intron 50.0%
GTCGCATGTAAGTGGTACTG+TGG + chr5_4:2798200-2798219 Msa0829770:intron 50.0%
! CTGTATAGGCTGGTTGGTGT+TGG + chr5_4:2798331-2798350 Msa0829770:intron 50.0%
AAAGCAAACCAGAGAAGCCG+GGG - chr5_4:2798404-2798423 None:intergenic 50.0%
GTACCTGACACAGTTGCATC+AGG + chr5_4:2799118-2799137 Msa0829770:CDS 50.0%
ACTCCTGATGCAACTGTGTC+AGG - chr5_4:2799124-2799143 None:intergenic 50.0%
!! GCGGTTTTCTTTTCAGGGTC+CGG + chr5_4:2800969-2800988 Msa0829770:intron 50.0%
ACCTGGAGAACTCCAACAAG+GGG - chr5_4:2801096-2801115 None:intergenic 50.0%
GACCTGGAGAACTCCAACAA+GGG - chr5_4:2801097-2801116 None:intergenic 50.0%
TGACCTGGAGAACTCCAACA+AGG - chr5_4:2801098-2801117 None:intergenic 50.0%
GGATCTGTAAAAGGCTGACC+TGG - chr5_4:2801113-2801132 None:intergenic 50.0%
GGTGTGTGTGTCTGTGAATG+TGG - chr5_4:2801144-2801163 None:intergenic 50.0%
! GTGGTGATGCGAGACTTTAG+AGG - chr5_4:2801921-2801940 None:intergenic 50.0%
!! AGCCAAGTGGTGGGTCACAA+GGG - chr5_4:2797361-2797380 None:intergenic 55.0%
!! TAGCCAAGTGGTGGGTCACA+AGG - chr5_4:2797362-2797381 None:intergenic 55.0%
AAATCCCCCCTGCACACAAC+AGG - chr5_4:2797510-2797529 None:intergenic 55.0%
!! TAGGCTGGTTGGTGTTGGTG+AGG + chr5_4:2798336-2798355 Msa0829770:intron 55.0%
!! GGAATAGTGGGCACATTGGC+TGG + chr5_4:2800084-2800103 Msa0829770:CDS 55.0%
!! ATAGTGGGCACATTGGCTGG+AGG + chr5_4:2800087-2800106 Msa0829770:CDS 55.0%
ACTCCAACAAGGGGTGAGGA+AGG - chr5_4:2801087-2801106 None:intergenic 55.0%
GAGAACTCCAACAAGGGGTG+AGG - chr5_4:2801091-2801110 None:intergenic 55.0%
ACCCCTTGTTGGAGTTCTCC+AGG + chr5_4:2801092-2801111 Msa0829770:CDS 55.0%
TGTGTCTGTGAATGTGGGGC+GGG - chr5_4:2801138-2801157 None:intergenic 55.0%
GTGTGTCTGTGAATGTGGGG+CGG - chr5_4:2801139-2801158 None:intergenic 55.0%
ACCATATTGTGTCCAGCGGC+TGG + chr5_4:2801740-2801759 Msa0829770:CDS 55.0%
TCCAGCCGCTGGACACAATA+TGG - chr5_4:2801744-2801763 None:intergenic 55.0%
TGTGTCCAGCGGCTGGAATA+TGG + chr5_4:2801747-2801766 Msa0829770:CDS 55.0%
TCCCCTTGTGACCCACCACT+TGG + chr5_4:2797356-2797375 Msa0829770:intron 60.0%
!! GCCAAGTGGTGGGTCACAAG+GGG - chr5_4:2797360-2797379 None:intergenic 60.0%
TGACAATGCCCCGGCTTCTC+TGG + chr5_4:2798393-2798412 Msa0829770:CDS 60.0%
GGCAACGGTAGACATGGCCA+TGG - chr5_4:2801043-2801062 None:intergenic 60.0%
GTGCCTTCCTCACCCCTTGT+TGG + chr5_4:2801081-2801100 Msa0829770:CDS 60.0%
TGTCTGTGAATGTGGGGCGG+GGG - chr5_4:2801136-2801155 None:intergenic 60.0%
GTGTCTGTGAATGTGGGGCG+GGG - chr5_4:2801137-2801156 None:intergenic 60.0%
GCAAAGCAGAGGGAGGGAAG+TGG + chr5_4:2801608-2801627 Msa0829770:intron 60.0%
AAGCAGAGGGAGGGAAGTGG+AGG + chr5_4:2801611-2801630 Msa0829770:intron 60.0%
GGGCGGGGGGGATCTGTAAA+AGG - chr5_4:2801122-2801141 None:intergenic 65.0%
TCTGTGAATGTGGGGCGGGG+GGG - chr5_4:2801134-2801153 None:intergenic 65.0%
GTCTGTGAATGTGGGGCGGG+GGG - chr5_4:2801135-2801154 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 2796385 2802355 2796385 ID=Msa0829770;Name=Msa0829770
chr5_4 mRNA 2796385 2802355 2796385 ID=Msa0829770-mRNA-1;Parent=Msa0829770;Name=Msa0829770-mRNA-1;_AED=0.21;_eAED=0.21;_QI=179|1|1|1|1|0.93|16|169|510
chr5_4 exon 2796385 2796649 2796385 ID=Msa0829770-mRNA-1:exon:988;Parent=Msa0829770-mRNA-1
chr5_4 exon 2796906 2796998 2796906 ID=Msa0829770-mRNA-1:exon:989;Parent=Msa0829770-mRNA-1
chr5_4 exon 2797521 2797622 2797521 ID=Msa0829770-mRNA-1:exon:990;Parent=Msa0829770-mRNA-1
chr5_4 exon 2798102 2798206 2798102 ID=Msa0829770-mRNA-1:exon:991;Parent=Msa0829770-mRNA-1
chr5_4 exon 2798339 2798414 2798339 ID=Msa0829770-mRNA-1:exon:992;Parent=Msa0829770-mRNA-1
chr5_4 exon 2798697 2798771 2798697 ID=Msa0829770-mRNA-1:exon:993;Parent=Msa0829770-mRNA-1
chr5_4 exon 2798907 2799009 2798907 ID=Msa0829770-mRNA-1:exon:994;Parent=Msa0829770-mRNA-1
chr5_4 exon 2799086 2799148 2799086 ID=Msa0829770-mRNA-1:exon:995;Parent=Msa0829770-mRNA-1
chr5_4 exon 2799257 2799338 2799257 ID=Msa0829770-mRNA-1:exon:996;Parent=Msa0829770-mRNA-1
chr5_4 exon 2799466 2799563 2799466 ID=Msa0829770-mRNA-1:exon:997;Parent=Msa0829770-mRNA-1
chr5_4 exon 2799777 2799853 2799777 ID=Msa0829770-mRNA-1:exon:998;Parent=Msa0829770-mRNA-1
chr5_4 exon 2800042 2800155 2800042 ID=Msa0829770-mRNA-1:exon:999;Parent=Msa0829770-mRNA-1
chr5_4 exon 2800567 2800686 2800567 ID=Msa0829770-mRNA-1:exon:1000;Parent=Msa0829770-mRNA-1
chr5_4 exon 2800985 2801113 2800985 ID=Msa0829770-mRNA-1:exon:1001;Parent=Msa0829770-mRNA-1
chr5_4 exon 2801698 2801776 2801698 ID=Msa0829770-mRNA-1:exon:1002;Parent=Msa0829770-mRNA-1
chr5_4 exon 2802056 2802355 2802056 ID=Msa0829770-mRNA-1:exon:1003;Parent=Msa0829770-mRNA-1
chr5_4 five_prime_UTR 2796385 2796563 2796385 ID=Msa0829770-mRNA-1:five_prime_utr;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2796564 2796649 2796564 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2796906 2796998 2796906 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2797521 2797622 2797521 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2798102 2798206 2798102 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2798339 2798414 2798339 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2798697 2798771 2798697 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2798907 2799009 2798907 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2799086 2799148 2799086 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2799257 2799338 2799257 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2799466 2799563 2799466 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2799777 2799853 2799777 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2800042 2800155 2800042 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2800567 2800686 2800567 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2800985 2801113 2800985 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2801698 2801776 2801698 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 CDS 2802056 2802186 2802056 ID=Msa0829770-mRNA-1:cds;Parent=Msa0829770-mRNA-1
chr5_4 three_prime_UTR 2802187 2802355 2802187 ID=Msa0829770-mRNA-1:three_prime_utr;Parent=Msa0829770-mRNA-1
Gene Sequence

>Msa0829770

ATGCAAGTAACATCCAAAGTCTTGTTCATGGAACCACCCATAGTGTCATCCATGATTCCCACAACTTCATGGTTTACACCAAAGAGGTTACTTGGTATATTTTGTGTGATTAATTTGTTAAACTATTTGGATCAAGGAGCAATAGCTAGCAATGGTGTTAATGGAAGTACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAAGATGGAGTTTTATCATCTGCTTTTATGGTTGGACTTCTCGTGGCTTCTCCAATATTTGCCTCTCTAGCTCAGAGTGTAAATCCATTTAGACTTATAGGAGTTGGATTGTCAATGTGGACTCTTGCGACCTTCTTTTGTGGTTTTTCTTTCAATTTCTGGTCCATTTCTGTCTGTCGCATGCTGGTTGGTGTTGGTGAGGCTTCGTTTATAAGTTTAGCACCACCTTTCATTGATGACAATGCCCCGGCTTCTCTGAAAACAACATGGCTCGCAATGTTTTACATGTGTATACCATCTGGATATGCACTTGGCTATGTTTATGGTGGTTTGATTGGAAGTAATTTTGGTTGGCGTTATGCATTCTGGGTAGAGTCTATATTGATGCTTCCATTTGCTATTTCAGGATTTTTAATGAAGCCTTTACAGTTGAAAGGTTTTGTTCCTGTTGATTTGATAAAGGCACAAGTACCTGACACAGTTGCATCAGGAGTTCATGTCACGAACGCTTCTAACGGCAGAGATGAGTCATTGTCTTTTAAGGAAGAATTCAGAGATAAAAGCTCAAATGACCAATCCAAGTCAAAATCTGCAACGAAAATGCTTGATCAGTTCTCAAGATTTTTTATTGATATGAAAGCGCTCCTGCTTGATAATGTTTATATTATCAATGTTCTAGGTCACATAGCGTACAACTTTGTCTTAGGTGCTTACTCATATTGGGGTCCCAAAGTTGTCTACAATATTTATAACATGACTGATTCAGATTTGGTATTTGGAGGAATTACAATTGTATGTGGAATAGTGGGCACATTGGCTGGAGGATTTGTTCTGGATTATATGAGTAACACCTTATCAAATGCATTTAAGCTTCTCTCAGTGACAACATTTCTTGGGGCAGCATTTTGTTTTGGAGCCTTCTTATGCAGAAATGTGAATGGCTTTCTTGTTCTTTTCTCTATTGGTGAACTTCTTGTTTTTGCCACTCAGGGTCCGGTGAATTTTGTATGTCTTCATTGTGTTAAACCAAGTTTGAGACCTTTATCCATGGCCATGTCTACCGTTGCCATTCATCTCTTTGGAGATGTGCCTTCCTCACCCCTTGTTGGAGTTCTCCAGGATAGCATTAACAACTGGAGAACAACTGCATTGATCCTAACAACCATATTGTGTCCAGCGGCTGGAATATGGTTTATCGGAATATTTGTGCATAGTGTGGATAAATTTGAAGATGACAGTGAACAACAAGTGTGCAATATACCGTTACTTCAAGAGAAGACCGAAGAAACATCAATATCTCATGCACAATCTCAATCTCATGAATGTTGA

Protein sequence

>Msa0829770

MQVTSKVLFMEPPIVSSMIPTTSWFTPKRLLGIFCVINLLNYLDQGAIASNGVNGSTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAQSVNPFRLIGVGLSMWTLATFFCGFSFNFWSISVCRMLVGVGEASFISLAPPFIDDNAPASLKTTWLAMFYMCIPSGYALGYVYGGLIGSNFGWRYAFWVESILMLPFAISGFLMKPLQLKGFVPVDLIKAQVPDTVASGVHVTNASNGRDESLSFKEEFRDKSSNDQSKSKSATKMLDQFSRFFIDMKALLLDNVYIINVLGHIAYNFVLGAYSYWGPKVVYNIYNMTDSDLVFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSVTTFLGAAFCFGAFLCRNVNGFLVLFSIGELLVFATQGPVNFVCLHCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGVLQDSINNWRTTALILTTILCPAAGIWFIGIFVHSVDKFEDDSEQQVCNIPLLQEKTEETSISHAQSQSHEC*