Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405570 | XP_024630493.2 | 35.897 | 234 | 52 | 5 | 100 | 235 | 215 | 448 | 1.89e-24 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405570 | G7JX53 | 39.044 | 251 | 74 | 5 | 57 | 232 | 230 | 476 | 1.90e-21 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa1405570 | 0.846399 | 2.226250e-59 | -8.615850e-47 |
| Msa0087010 | Msa1405570 | 0.841215 | 5.440788e-58 | -8.615850e-47 |
| Msa0094760 | Msa1405570 | 0.854163 | 1.477818e-61 | -8.615850e-47 |
| Msa0606960 | Msa1405570 | 0.835590 | 1.536133e-56 | -8.615850e-47 |
| Msa0649960 | Msa1405570 | 0.805532 | 1.275779e-49 | -8.615850e-47 |
| Msa0655670 | Msa1405570 | 0.845335 | 4.329599e-59 | -8.615850e-47 |
| Msa1306260 | Msa1405570 | 0.982704 | 8.800503e-156 | -8.615850e-47 |
| Msa1003060 | Msa1405570 | 0.849538 | 3.032547e-60 | -8.615850e-47 |
| Msa1009560 | Msa1405570 | 0.986956 | 1.497742e-168 | -8.615850e-47 |
| Msa0320120 | Msa1405570 | 0.824169 | 9.338489e-54 | -8.615850e-47 |
| Msa1153980 | Msa1405570 | 0.810304 | 1.232084e-50 | -8.615850e-47 |
| Msa0520410 | Msa1405570 | 0.984793 | 1.326504e-161 | -8.615850e-47 |
| Msa0542240 | Msa1405570 | 0.867950 | 9.378269e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGACCTATGGGATTTC+AGG | 0.142267 | tig0023154:+45739 | None:intergenic |
| TTGTTTAGGATGATCAATTT+TGG | 0.186172 | tig0023154:-44615 | Msa1405570:intron |
| TCTTCGCTAACACCAGAAAA+AGG | 0.217962 | tig0023154:-44292 | Msa1405570:three_prime_UTR |
| TACCAGTGATTCTGAACTTC+AGG | 0.282604 | tig0023154:-44470 | Msa1405570:CDS |
| AGACCAATGTTATCAATCTA+AGG | 0.317503 | tig0023154:-45169 | Msa1405570:intron |
| AACTCACTTCAGCTTGAGTA+TGG | 0.353110 | tig0023154:+47815 | None:intergenic |
| AGTTGCATTATTTCATTTAG+TGG | 0.354080 | tig0023154:+45476 | None:intergenic |
| TAACTTTGTTGAAGATTGTT+TGG | 0.360834 | tig0023154:+44217 | None:intergenic |
| CGTCACACGCGGTCATTGAA+TGG | 0.360842 | tig0023154:+47396 | None:intergenic |
| AAAGAAAGTTCACTACTTCA+TGG | 0.370738 | tig0023154:-47083 | Msa1405570:five_prime_UTR |
| TGGGACAGTTGTTCTGTTCA+AGG | 0.400212 | tig0023154:-44779 | Msa1405570:CDS |
| TGTTCTTATCCATGTGTTCA+AGG | 0.427610 | tig0023154:-46893 | Msa1405570:CDS |
| AACAATCTTCAACAAAGTTA+AGG | 0.430707 | tig0023154:-44214 | Msa1405570:three_prime_UTR |
| AAGTTAAGTGGCAGCCAACT+TGG | 0.439945 | tig0023154:-44799 | Msa1405570:intron |
| CGCGTGTGACGAAAATCAAC+AGG | 0.474646 | tig0023154:-47384 | Msa1405570:intron |
| TTCAGAATCACTGGTAATGC+TGG | 0.482229 | tig0023154:+44477 | None:intergenic |
| GAGATGGAAGTGGAATATAA+TGG | 0.485881 | tig0023154:-45050 | Msa1405570:CDS |
| CAAATGTTATAGGGCGGCAA+AGG | 0.495945 | tig0023154:-45228 | Msa1405570:intron |
| GATGATGAAGATGGGCTCAC+TGG | 0.503503 | tig0023154:+45551 | None:intergenic |
| ACCAGTGATTCTGAACTTCA+GGG | 0.504024 | tig0023154:-44469 | Msa1405570:CDS |
| GTATGGAAGAGAGAGAGGCT+TGG | 0.504350 | tig0023154:+47832 | None:intergenic |
| TGATGTGATTCTTATGTTGA+AGG | 0.505243 | tig0023154:-46525 | Msa1405570:intron |
| TTGTAGGTTTAAGTTAGAGA+TGG | 0.513043 | tig0023154:-45066 | Msa1405570:intron |
| AATTAATCAATCGCCGTATG+TGG | 0.516337 | tig0023154:-44110 | Msa1405570:three_prime_UTR |
| GTTTAAGTTAGAGATGGAAG+TGG | 0.518694 | tig0023154:-45060 | Msa1405570:CDS |
| ACGAACTGTGATATCAGATC+TGG | 0.519162 | tig0023154:-47582 | Msa1405570:intron |
| ACCCTGAAGTTCAGAATCAC+TGG | 0.520945 | tig0023154:+44468 | None:intergenic |
| TTCGTTGCAACTACTTCAAG+AGG | 0.523500 | tig0023154:+47600 | None:intergenic |
| AAATGTTATAGGGCGGCAAA+GGG | 0.559414 | tig0023154:-45227 | Msa1405570:intron |
| AACATGGGATCTCTAATGCA+TGG | 0.560922 | tig0023154:-45786 | Msa1405570:CDS |
| GAGAATGATGAGTCTTCGAC+AGG | 0.561049 | tig0023154:+45605 | None:intergenic |
| CTTGAGTATGGAAGAGAGAG+AGG | 0.561484 | tig0023154:+47827 | None:intergenic |
| TGTGACAGAGATGATGAAGA+TGG | 0.565680 | tig0023154:+45542 | None:intergenic |
| AGTTAAGTGGCAGCCAACTT+GGG | 0.566681 | tig0023154:-44798 | Msa1405570:intron |
| GTTCTGTTCAAGGAGGATGA+AGG | 0.568696 | tig0023154:-44769 | Msa1405570:CDS |
| TATCAATCCTGAAATCCCAT+AGG | 0.579861 | tig0023154:-45746 | Msa1405570:intron |
| ATGATGAAGATGGGCTCACT+GGG | 0.582220 | tig0023154:+45552 | None:intergenic |
| TATCTTCAACCTTGAACACA+TGG | 0.591729 | tig0023154:+46884 | None:intergenic |
| ATGGTGAAGATAGAAGATAA+AGG | 0.593300 | tig0023154:-47064 | Msa1405570:five_prime_UTR |
| AAATGAAATAATGCAACTCA+CGG | 0.594077 | tig0023154:-45471 | Msa1405570:CDS |
| AGAGTAAATAGGGCCACATA+CGG | 0.595559 | tig0023154:+44097 | None:intergenic |
| TTTATAGAGAAGTATGAACA+TGG | 0.603096 | tig0023154:-45802 | Msa1405570:intron |
| ACAGAACAACTGTCCCAAGT+TGG | 0.613921 | tig0023154:+44785 | None:intergenic |
| AAACCTTAGATTGATAACAT+TGG | 0.621112 | tig0023154:+45166 | None:intergenic |
| TCACAGAAAGCAGACAGTGT+TGG | 0.629389 | tig0023154:+44334 | None:intergenic |
| GTGACAGAGATGATGAAGAT+GGG | 0.640666 | tig0023154:+45543 | None:intergenic |
| GACAGTTGTTCTGTTCAAGG+AGG | 0.654985 | tig0023154:-44776 | Msa1405570:CDS |
| TTATAGAGAAGTATGAACAT+GGG | 0.666382 | tig0023154:-45801 | Msa1405570:intron |
| TGAAATAATGCAACTCACGG+AGG | 0.707979 | tig0023154:-45468 | Msa1405570:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAAAAAATTGATGAAA+TGG | + | tig0023154:44628-44647 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAATTGAA+TGG | + | tig0023154:44889-44908 | None:intergenic | 15.0% |
| !! | AGCATACAAAAATAAAAATA+AGG | + | tig0023154:44899-44918 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCAATCAAAAGA+AGG | + | tig0023154:45461-45480 | None:intergenic | 15.0% |
| !! | TGTTATATTATTTATAGATC+AGG | + | tig0023154:45827-45846 | None:intergenic | 15.0% |
| !! | TTAGAAAGATGTTATAATTA+CGG | + | tig0023154:46963-46982 | None:intergenic | 15.0% |
| !! | AAAAAATAGTAGAGTAAATA+GGG | + | tig0023154:47783-47802 | None:intergenic | 15.0% |
| !! | ATAAAGAAAGAAAAAGTAGT+GGG | + | tig0023154:44081-44100 | None:intergenic | 20.0% |
| !! | AATAAAGAAAGAAAAAGTAG+TGG | + | tig0023154:44082-44101 | None:intergenic | 20.0% |
| !! | AAAGAAATCTAAAGAAAGAA+AGG | + | tig0023154:44113-44132 | None:intergenic | 20.0% |
| !!! | AGATTTCTTTTTAAAAGCTT+TGG | - | tig0023154:44123-44142 | Msa1405570:three_prime_UTR | 20.0% |
| !! | TAGAAAAGGGAAAAAAATAT+TGG | + | tig0023154:44319-44338 | None:intergenic | 20.0% |
| !! | TGCATCAATAATATAGAAAA+GGG | + | tig0023154:44332-44351 | None:intergenic | 20.0% |
| !! | ATGCATCAATAATATAGAAA+AGG | + | tig0023154:44333-44352 | None:intergenic | 20.0% |
| !! | TATTATTGATGCATATTTGT+TGG | - | tig0023154:44339-44358 | Msa1405570:intron | 20.0% |
| !! | TCTATAGTGCAAAAAAAAAA+AGG | - | tig0023154:45218-45237 | Msa1405570:CDS | 20.0% |
| !!! | TTAATTTTGTAAGTCAATCA+TGG | + | tig0023154:45283-45302 | None:intergenic | 20.0% |
| !! | AAAGAAATACACAATATGAA+TGG | + | tig0023154:45425-45444 | None:intergenic | 20.0% |
| !!! | TTTTTTCTATTGCAATTTGT+TGG | + | tig0023154:45497-45516 | None:intergenic | 20.0% |
| !! | TAGTGATTAGAATAAACAAA+AGG | + | tig0023154:45587-45606 | None:intergenic | 20.0% |
| !! | CATAGTAAAAAATAATTGTG+AGG | + | tig0023154:45983-46002 | None:intergenic | 20.0% |
| !! | AAAAATTGTAGTAAACAAAC+AGG | + | tig0023154:46224-46243 | None:intergenic | 20.0% |
| !!! | CAATTTTTGCAAATGTATTT+AGG | - | tig0023154:46236-46255 | Msa1405570:intron | 20.0% |
| !! | TTTATGTTCATACGAATTAT+AGG | - | tig0023154:47202-47221 | Msa1405570:intron | 20.0% |
| !! | TTATGTTCATACGAATTATA+GGG | - | tig0023154:47203-47222 | Msa1405570:intron | 20.0% |
| !! | TGGTTATTTATCATAAAAGA+TGG | - | tig0023154:47367-47386 | Msa1405570:intron | 20.0% |
| !! | TCAGGTTATATAGTTTATTT+AGG | - | tig0023154:47456-47475 | Msa1405570:intron | 20.0% |
| !! | CTATAGTCTAAAAACTAAAA+TGG | + | tig0023154:47726-47745 | None:intergenic | 20.0% |
| !! | CAAAAAATAGTAGAGTAAAT+AGG | + | tig0023154:47784-47803 | None:intergenic | 20.0% |
| !! | AAGCTTTTTATTAGTCAAAG+CGG | - | tig0023154:44242-44261 | Msa1405570:three_prime_UTR | 25.0% |
| !!! | ATAGTTGTTTTAGAGCAAAA+GGG | + | tig0023154:44400-44419 | None:intergenic | 25.0% |
| !!! | AATAGTTGTTTTAGAGCAAA+AGG | + | tig0023154:44401-44420 | None:intergenic | 25.0% |
| !!! | GATTAAAGTTTTGTTGTTGT+TGG | - | tig0023154:44652-44671 | Msa1405570:intron | 25.0% |
| ! | TTTCTACGATGCAAAAAAAA+AGG | - | tig0023154:45034-45053 | Msa1405570:CDS | 25.0% |
| ! | TCAACAAATTCAGAAATGAA+AGG | + | tig0023154:45075-45094 | None:intergenic | 25.0% |
| !!! | TGTTGTGATTCTTATTTTGA+AGG | - | tig0023154:45156-45175 | Msa1405570:intron | 25.0% |
| !!! | ATTCTTATTTTGAAGGTTGA+AGG | - | tig0023154:45163-45182 | Msa1405570:intron | 25.0% |
| ! | CTATAGAAACAAAAGAGATT+GGG | + | tig0023154:45205-45224 | None:intergenic | 25.0% |
| ! | ACTATAGAAACAAAAGAGAT+TGG | + | tig0023154:45206-45225 | None:intergenic | 25.0% |
| !! | TTTTGACATGATTTAGATCA+AGG | - | tig0023154:45389-45408 | Msa1405570:intron | 25.0% |
| !!! | TTCTATTTCTATCTATGTAC+TGG | - | tig0023154:45637-45656 | Msa1405570:intron | 25.0% |
| !!! | TCTATTTCTATCTATGTACT+GGG | - | tig0023154:45638-45657 | Msa1405570:intron | 25.0% |
| ! | TTATTTATAGATCAGGTATG+TGG | + | tig0023154:45820-45839 | None:intergenic | 25.0% |
| !! | TTTATAGAGAAGTATGAACA+TGG | - | tig0023154:46065-46084 | Msa1405570:intron | 25.0% |
| !! | TTATAGAGAAGTATGAACAT+GGG | - | tig0023154:46066-46085 | Msa1405570:intron | 25.0% |
| !! | TTTTGAATTCTATGACCTAT+GGG | + | tig0023154:46139-46158 | None:intergenic | 25.0% |
| !! | TTTTTGAATTCTATGACCTA+TGG | + | tig0023154:46140-46159 | None:intergenic | 25.0% |
| ! | TAGGTCATAGAATTCAAAAA+AGG | - | tig0023154:46140-46159 | Msa1405570:intron | 25.0% |
| ! | AGGTCATAGAATTCAAAAAA+GGG | - | tig0023154:46141-46160 | Msa1405570:intron | 25.0% |
| ! | AGTTGCATTATTTCATTTAG+TGG | + | tig0023154:46394-46413 | None:intergenic | 25.0% |
| ! | AAATGAAATAATGCAACTCA+CGG | - | tig0023154:46396-46415 | Msa1405570:intron | 25.0% |
| !! | AAACCTTAGATTGATAACAT+TGG | + | tig0023154:46704-46723 | None:intergenic | 25.0% |
| ! | AACTTAAACCTACAATACAT+GGG | + | tig0023154:46796-46815 | None:intergenic | 25.0% |
| ! | TAACTTAAACCTACAATACA+TGG | + | tig0023154:46797-46816 | None:intergenic | 25.0% |
| !!! | GTAGCCAAGTTTTTTTTTTT+GGG | - | tig0023154:46844-46863 | Msa1405570:CDS | 25.0% |
| ! | TACGGAAGTTTAACATAATA+AGG | + | tig0023154:46945-46964 | None:intergenic | 25.0% |
| ! | AGCAAAATTGGATATTCTAA+TGG | + | tig0023154:47019-47038 | None:intergenic | 25.0% |
| !! | ATTAGAATATCCAATTTTGC+TGG | - | tig0023154:47018-47037 | Msa1405570:intron | 25.0% |
| ! | GAAATGTTTGTAAAGTTAAG+TGG | - | tig0023154:47056-47075 | Msa1405570:five_prime_UTR | 25.0% |
| ! | ATCCTAAACAAATAGCAAAA+TGG | + | tig0023154:47243-47262 | None:intergenic | 25.0% |
| !!! | TTGTTTAGGATGATCAATTT+TGG | - | tig0023154:47252-47271 | Msa1405570:intron | 25.0% |
| !!! | TGTTTAGGATGATCAATTTT+GGG | - | tig0023154:47253-47272 | Msa1405570:intron | 25.0% |
| !!! | AGTTTAGTCTTATGTTACTT+TGG | - | tig0023154:47294-47313 | Msa1405570:intron | 25.0% |
| ! | TAACTTTGTTGAAGATTGTT+TGG | + | tig0023154:47653-47672 | None:intergenic | 25.0% |
| ! | AACAATCTTCAACAAAGTTA+AGG | - | tig0023154:47653-47672 | Msa1405570:intron | 25.0% |
| TTAGTCATAGTTATGAGATC+TGG | + | tig0023154:44218-44237 | None:intergenic | 30.0% | |
| !! | TGTACTAAGTGTTTTTGTTG+TGG | - | tig0023154:44372-44391 | Msa1405570:intron | 30.0% |
| !! | TGCTCTAAAACAACTATTGT+TGG | - | tig0023154:44403-44422 | Msa1405570:intron | 30.0% |
| GAGTTTGACATGAAAACAAA+AGG | + | tig0023154:44593-44612 | None:intergenic | 30.0% | |
| AAAGAAAGTTCACTACTTCA+TGG | - | tig0023154:44784-44803 | Msa1405570:CDS | 30.0% | |
| ATGGTGAAGATAGAAGATAA+AGG | - | tig0023154:44803-44822 | Msa1405570:intron | 30.0% | |
| ! | AAGGAATTGAATGGTTAGTT+CGG | + | tig0023154:44880-44899 | None:intergenic | 30.0% |
| TGATGTGATTCTTATGTTGA+AGG | - | tig0023154:45342-45361 | Msa1405570:intron | 30.0% | |
| !! | CTATTTCTATCTATGTACTG+GGG | - | tig0023154:45639-45658 | Msa1405570:intron | 30.0% |
| TCTTCACAATGGTAAGATTA+AGG | - | tig0023154:45754-45773 | Msa1405570:CDS | 30.0% | |
| TGTGACTTATTAGTAACATG+TGG | + | tig0023154:45783-45802 | None:intergenic | 30.0% | |
| !! | TCGTCTTTTGAGAGATTTAT+TGG | - | tig0023154:46352-46371 | Msa1405570:intron | 30.0% |
| TGTTCAGGTCATAATAATGT+AGG | + | tig0023154:46504-46523 | None:intergenic | 30.0% | |
| AAAGTGAAACCATCAAAGAA+TGG | - | tig0023154:46588-46607 | Msa1405570:intron | 30.0% | |
| TAGTATCAACCATTCTTTGA+TGG | + | tig0023154:46600-46619 | None:intergenic | 30.0% | |
| AAGCATGTGTCAAATGTTAT+AGG | - | tig0023154:46629-46648 | Msa1405570:intron | 30.0% | |
| AGCATGTGTCAAATGTTATA+GGG | - | tig0023154:46630-46649 | Msa1405570:intron | 30.0% | |
| AGACCAATGTTATCAATCTA+AGG | - | tig0023154:46698-46717 | Msa1405570:intron | 30.0% | |
| ATTTACTACCCATGTATTGT+AGG | - | tig0023154:46785-46804 | Msa1405570:intron | 30.0% | |
| ! | TTGTAGGTTTAAGTTAGAGA+TGG | - | tig0023154:46801-46820 | Msa1405570:intron | 30.0% |
| !!! | CGTAGCCAAGTTTTTTTTTT+TGG | - | tig0023154:46843-46862 | Msa1405570:CDS | 30.0% |
| CGATCCCAAAAAAAAAAACT+TGG | + | tig0023154:46851-46870 | None:intergenic | 30.0% | |
| AGAATTGTTCCGAAAAATTC+AGG | - | tig0023154:47140-47159 | Msa1405570:intron | 30.0% | |
| ! | ATAACCTGACCTGAATTTTT+CGG | + | tig0023154:47152-47171 | None:intergenic | 30.0% |
| !!! | CACCATTTTGCTATTTGTTT+AGG | - | tig0023154:47238-47257 | Msa1405570:intron | 30.0% |
| GCATGTTTGAAAATATGACA+TGG | - | tig0023154:47347-47366 | Msa1405570:intron | 30.0% | |
| CTGTATGTTTCTTTAGATTC+AGG | - | tig0023154:47438-47457 | Msa1405570:intron | 30.0% | |
| ACCAAAAACAACATTGTTTG+GGG | + | tig0023154:47832-47851 | None:intergenic | 30.0% | |
| GACCAAAAACAACATTGTTT+GGG | + | tig0023154:47833-47852 | None:intergenic | 30.0% | |
| AGACCAAAAACAACATTGTT+TGG | + | tig0023154:47834-47853 | None:intergenic | 30.0% | |
| AGAACAACATAGATCTGACA+TGG | + | tig0023154:44960-44979 | None:intergenic | 35.0% | |
| TGTTCTTATCCATGTGTTCA+AGG | - | tig0023154:44974-44993 | Msa1405570:intron | 35.0% | |
| TATCTTCAACCTTGAACACA+TGG | + | tig0023154:44986-45005 | None:intergenic | 35.0% | |
| TGAACAAACACACTTTATCG+TGG | + | tig0023154:45529-45548 | None:intergenic | 35.0% | |
| ACAAAGAACAATGCTGAATC+TGG | - | tig0023154:45716-45735 | Msa1405570:intron | 35.0% | |
| TTGTGAAGAAGAATGATGGT+TGG | + | tig0023154:45743-45762 | None:intergenic | 35.0% | |
| ACCATCATTCTTCTTCACAA+TGG | - | tig0023154:45743-45762 | Msa1405570:intron | 35.0% | |
| ACCATTGTGAAGAAGAATGA+TGG | + | tig0023154:45747-45766 | None:intergenic | 35.0% | |
| ATGCACGGGGAATTATAAAT+TGG | + | tig0023154:45956-45975 | None:intergenic | 35.0% | |
| TATCAATCCTGAAATCCCAT+AGG | - | tig0023154:46121-46140 | Msa1405570:intron | 35.0% | |
| ACATACTTGGCTTATGATCT+TGG | + | tig0023154:46195-46214 | None:intergenic | 35.0% | |
| AAACAGGATTGCAACATACT+TGG | + | tig0023154:46208-46227 | None:intergenic | 35.0% | |
| GCAACAAATCAGAAATGTTC+AGG | + | tig0023154:46519-46538 | None:intergenic | 35.0% | |
| ATGTGTCAAATGTTATAGGG+CGG | - | tig0023154:46633-46652 | Msa1405570:intron | 35.0% | |
| CATGCATGTTGACAAGATAT+TGG | - | tig0023154:46740-46759 | Msa1405570:intron | 35.0% | |
| ! | GTTTAAGTTAGAGATGGAAG+TGG | - | tig0023154:46807-46826 | Msa1405570:intron | 35.0% |
| GAGATGGAAGTGGAATATAA+TGG | - | tig0023154:46817-46836 | Msa1405570:intron | 35.0% | |
| CTAACAAATGCACTGCATTT+AGG | - | tig0023154:46979-46998 | Msa1405570:intron | 35.0% | |
| !!! | ATTTTGGGTGTTGAAGATGT+TGG | - | tig0023154:47268-47287 | Msa1405570:intron | 35.0% |
| AATTAATCAATCGCCGTATG+TGG | - | tig0023154:47757-47776 | Msa1405570:intron | 35.0% | |
| !!! | ACCCCAAACAATGTTGTTTT+TGG | - | tig0023154:47828-47847 | Msa1405570:five_prime_UTR | 35.0% |
| AACTCACTTCAGCTTGAGTA+TGG | + | tig0023154:44055-44074 | None:intergenic | 40.0% | |
| TTCGTTGCAACTACTTCAAG+AGG | + | tig0023154:44270-44289 | None:intergenic | 40.0% | |
| ACGAACTGTGATATCAGATC+TGG | - | tig0023154:44285-44304 | Msa1405570:three_prime_UTR | 40.0% | |
| !!! | TACTGCTGCTTGCTCTTTTT+TGG | - | tig0023154:44748-44767 | Msa1405570:CDS | 40.0% |
| TAATTGTGAGGTAGCATGCA+CGG | + | tig0023154:45971-45990 | None:intergenic | 40.0% | |
| AACATGGGATCTCTAATGCA+TGG | - | tig0023154:46081-46100 | Msa1405570:intron | 40.0% | |
| TCTATGACCTATGGGATTTC+AGG | + | tig0023154:46131-46150 | None:intergenic | 40.0% | |
| GTGACAGAGATGATGAAGAT+GGG | + | tig0023154:46327-46346 | None:intergenic | 40.0% | |
| TGTGACAGAGATGATGAAGA+TGG | + | tig0023154:46328-46347 | None:intergenic | 40.0% | |
| TGAAATAATGCAACTCACGG+AGG | - | tig0023154:46399-46418 | Msa1405570:intron | 40.0% | |
| AAATGTTATAGGGCGGCAAA+GGG | - | tig0023154:46640-46659 | Msa1405570:intron | 40.0% | |
| !! | ACATTGGTCTCATGCTTTTC+AGG | + | tig0023154:46688-46707 | None:intergenic | 40.0% |
| !! | TCGAGTTGATCCAGCAAAAT+TGG | + | tig0023154:47031-47050 | None:intergenic | 40.0% |
| TGTTCCGAAAAATTCAGGTC+AGG | - | tig0023154:47145-47164 | Msa1405570:intron | 40.0% | |
| ! | TTCAGAATCACTGGTAATGC+TGG | + | tig0023154:47393-47412 | None:intergenic | 40.0% |
| TACCAGTGATTCTGAACTTC+AGG | - | tig0023154:47397-47416 | Msa1405570:five_prime_UTR | 40.0% | |
| ACCAGTGATTCTGAACTTCA+GGG | - | tig0023154:47398-47417 | Msa1405570:five_prime_UTR | 40.0% | |
| TCTTCGCTAACACCAGAAAA+AGG | - | tig0023154:47575-47594 | Msa1405570:intron | 40.0% | |
| CTTCGCTAACACCAGAAAAA+GGG | - | tig0023154:47576-47595 | Msa1405570:intron | 40.0% | |
| ! | AGAATCTGCAACCCTTTTTC+TGG | + | tig0023154:47590-47609 | None:intergenic | 40.0% |
| AGAGTAAATAGGGCCACATA+CGG | + | tig0023154:47773-47792 | None:intergenic | 40.0% | |
| CTTGAGTATGGAAGAGAGAG+AGG | + | tig0023154:44043-44062 | None:intergenic | 45.0% | |
| !!! | CTGTTGATTTTCGTCACACG+CGG | + | tig0023154:44485-44504 | None:intergenic | 45.0% |
| AATTGTGAGGTAGCATGCAC+GGG | + | tig0023154:45970-45989 | None:intergenic | 45.0% | |
| GAGAATGATGAGTCTTCGAC+AGG | + | tig0023154:46265-46284 | None:intergenic | 45.0% | |
| ! | ATGATGAAGATGGGCTCACT+GGG | + | tig0023154:46318-46337 | None:intergenic | 45.0% |
| CAAATGTTATAGGGCGGCAA+AGG | - | tig0023154:46639-46658 | Msa1405570:intron | 45.0% | |
| !! | TGCTTTTCAGGACACAACAG+AGG | + | tig0023154:46676-46695 | None:intergenic | 45.0% |
| CGTGAGTGAAATGAGTTGCT+TGG | - | tig0023154:46869-46888 | Msa1405570:CDS | 45.0% | |
| TACAACTGCAGACCTTCACA+GGG | - | tig0023154:46895-46914 | Msa1405570:CDS | 45.0% | |
| CAAATGCACTGCATTTAGGC+TGG | - | tig0023154:46983-47002 | Msa1405570:intron | 45.0% | |
| AAGTTAAGTGGCAGCCAACT+TGG | - | tig0023154:47068-47087 | Msa1405570:five_prime_UTR | 45.0% | |
| AGTTAAGTGGCAGCCAACTT+GGG | - | tig0023154:47069-47088 | Msa1405570:five_prime_UTR | 45.0% | |
| ACAGAACAACTGTCCCAAGT+TGG | + | tig0023154:47085-47104 | None:intergenic | 45.0% | |
| TGGGACAGTTGTTCTGTTCA+AGG | - | tig0023154:47088-47107 | Msa1405570:five_prime_UTR | 45.0% | |
| GACAGTTGTTCTGTTCAAGG+AGG | - | tig0023154:47091-47110 | Msa1405570:five_prime_UTR | 45.0% | |
| GTTCTGTTCAAGGAGGATGA+AGG | - | tig0023154:47098-47117 | Msa1405570:intron | 45.0% | |
| ACCCTGAAGTTCAGAATCAC+TGG | + | tig0023154:47402-47421 | None:intergenic | 45.0% | |
| TCACAGAAAGCAGACAGTGT+TGG | + | tig0023154:47536-47555 | None:intergenic | 45.0% | |
| !! | ATAAAATAATAAGAAATATA+AGG | + | tig0023154:45259-45278 | None:intergenic | 5.0% |
| !! | AAAGAATTATTAAAATTTAT+AGG | + | tig0023154:45883-45902 | None:intergenic | 5.0% |
| GTATGGAAGAGAGAGAGGCT+TGG | + | tig0023154:44038-44057 | None:intergenic | 50.0% | |
| CGCGTGTGACGAAAATCAAC+AGG | - | tig0023154:44483-44502 | Msa1405570:CDS | 50.0% | |
| ATTGTGAGGTAGCATGCACG+GGG | + | tig0023154:45969-45988 | None:intergenic | 50.0% | |
| ! | GATGATGAAGATGGGCTCAC+TGG | + | tig0023154:46319-46338 | None:intergenic | 50.0% |
| CTACAACTGCAGACCTTCAC+AGG | - | tig0023154:46894-46913 | Msa1405570:CDS | 50.0% | |
| CGTCACACGCGGTCATTGAA+TGG | + | tig0023154:44474-44493 | None:intergenic | 55.0% | |
| CCTCAGTCACGACCCTGTGA+AGG | + | tig0023154:46910-46929 | None:intergenic | 60.0% | |
| CCTTCACAGGGTCGTGACTG+AGG | - | tig0023154:46907-46926 | Msa1405570:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023154 | gene | 44023 | 47866 | 44023 | ID=Msa1405570;Name=Msa1405570 |
| tig0023154 | mRNA | 44023 | 47866 | 44023 | ID=Msa1405570-mRNA-1;Parent=Msa1405570;Name=Msa1405570-mRNA-1;_AED=0.23;_eAED=0.23;_QI=293|0.53|0.43|1|0.53|0.62|16|292|235 |
| tig0023154 | exon | 44023 | 44356 | 44023 | ID=Msa1405570-mRNA-1:exon:24205;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 44450 | 44503 | 44450 | ID=Msa1405570-mRNA-1:exon:24204;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 44600 | 44629 | 44600 | ID=Msa1405570-mRNA-1:exon:24203;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 44723 | 44807 | 44723 | ID=Msa1405570-mRNA-1:exon:24202;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 45020 | 45082 | 45020 | ID=Msa1405570-mRNA-1:exon:24201;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 45170 | 45238 | 45170 | ID=Msa1405570-mRNA-1:exon:24200;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 45327 | 45334 | 45327 | ID=Msa1405570-mRNA-1:exon:24199;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 45469 | 45631 | 45469 | ID=Msa1405570-mRNA-1:exon:24198;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 45747 | 45817 | 45747 | ID=Msa1405570-mRNA-1:exon:24197;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 46526 | 46555 | 46526 | ID=Msa1405570-mRNA-1:exon:24196;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 46705 | 46711 | 46705 | ID=Msa1405570-mRNA-1:exon:24195;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 46834 | 46923 | 46834 | ID=Msa1405570-mRNA-1:exon:24194;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 47020 | 47111 | 47020 | ID=Msa1405570-mRNA-1:exon:24193;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 47385 | 47448 | 47385 | ID=Msa1405570-mRNA-1:exon:24192;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 47583 | 47670 | 47583 | ID=Msa1405570-mRNA-1:exon:24191;Parent=Msa1405570-mRNA-1 |
| tig0023154 | exon | 47822 | 47866 | 47822 | ID=Msa1405570-mRNA-1:exon:24190;Parent=Msa1405570-mRNA-1 |
| tig0023154 | five_prime_UTR | 47822 | 47866 | 47822 | ID=Msa1405570-mRNA-1:five_prime_utr;Parent=Msa1405570-mRNA-1 |
| tig0023154 | five_prime_UTR | 47583 | 47670 | 47583 | ID=Msa1405570-mRNA-1:five_prime_utr;Parent=Msa1405570-mRNA-1 |
| tig0023154 | five_prime_UTR | 47385 | 47448 | 47385 | ID=Msa1405570-mRNA-1:five_prime_utr;Parent=Msa1405570-mRNA-1 |
| tig0023154 | five_prime_UTR | 47020 | 47111 | 47020 | ID=Msa1405570-mRNA-1:five_prime_utr;Parent=Msa1405570-mRNA-1 |
| tig0023154 | five_prime_UTR | 46920 | 46923 | 46920 | ID=Msa1405570-mRNA-1:five_prime_utr;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 46834 | 46919 | 46834 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 46705 | 46711 | 46705 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 46526 | 46555 | 46526 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 45747 | 45817 | 45747 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 45469 | 45631 | 45469 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 45327 | 45334 | 45327 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 45170 | 45238 | 45170 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 45020 | 45082 | 45020 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 44723 | 44807 | 44723 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 44600 | 44629 | 44600 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 44450 | 44503 | 44450 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | CDS | 44315 | 44356 | 44315 | ID=Msa1405570-mRNA-1:cds;Parent=Msa1405570-mRNA-1 |
| tig0023154 | three_prime_UTR | 44023 | 44314 | 44023 | ID=Msa1405570-mRNA-1:three_prime_utr;Parent=Msa1405570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
