AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009560 MtrunA17_Chr5g0393521 39.316 117 47 4 2 94 53 169 9.74e-16 70.1
Msa1009560 MtrunA17_Chr1g0167871 38.462 117 48 4 2 94 500 616 1.04e-15 70.9
Msa1009560 MtrunA17_Chr5g0417421 38.462 117 48 4 2 94 121 237 2.62e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACCTATGGGATTTC+AGG 0.142267 7_1:+11216329 None:intergenic
TTGTTTAGGATGATCAATTT+TGG 0.186172 7_1:-11215204 Msa1009560:three_prime_UTR
TCTTCGCTAACACCAGAAAA+AGG 0.217962 7_1:-11214881 Msa1009560:three_prime_UTR
TCGAGTTGATCCAGCAAAAT+TGG 0.244680 7_1:+11215428 None:intergenic
TTTATGTTCATACGAATTAT+AGG 0.258066 7_1:-11215254 Msa1009560:three_prime_UTR
TACCAGTGATTCTGAACTTC+AGG 0.282604 7_1:-11215059 Msa1009560:three_prime_UTR
AGCAAAATTGGATATTCTAA+TGG 0.286408 7_1:+11215440 None:intergenic
TTCTATTTCTATCTATGTAC+TGG 0.315789 7_1:-11216820 Msa1009560:five_prime_UTR
AGACCAATGTTATCAATCTA+AGG 0.317503 7_1:-11215759 Msa1009560:intron
TTATGTTCATACGAATTATA+GGG 0.319659 7_1:-11215253 Msa1009560:three_prime_UTR
TAGTATCAACCATTCTTTGA+TGG 0.327014 7_1:+11215860 None:intergenic
AAGCATGTGTCAAATGTTAT+AGG 0.330903 7_1:-11215828 Msa1009560:CDS
ATCCTAAACAAATAGCAAAA+TGG 0.349955 7_1:+11215216 None:intergenic
ACAAAGAACAATGCTGAATC+TGG 0.353144 7_1:-11216741 Msa1009560:five_prime_UTR
AGTTGCATTATTTCATTTAG+TGG 0.354080 7_1:+11216066 None:intergenic
TAACTTTGTTGAAGATTGTT+TGG 0.360834 7_1:+11214806 None:intergenic
CGTCACACGCGGTCATTGAA+TGG 0.360842 7_1:+11217987 None:intergenic
AAAGAAAGTTCACTACTTCA+TGG 0.370738 7_1:-11217674 Msa1009560:five_prime_UTR
TGGGACAGTTGTTCTGTTCA+AGG 0.400212 7_1:-11215368 Msa1009560:CDS
ACTATAGAAACAAAAGAGAT+TGG 0.417735 7_1:+11217255 None:intergenic
TGTTCTTATCCATGTGTTCA+AGG 0.427610 7_1:-11217484 Msa1009560:five_prime_UTR
AACAATCTTCAACAAAGTTA+AGG 0.430707 7_1:-11214803 Msa1009560:three_prime_UTR
AGCATGTGTCAAATGTTATA+GGG 0.439555 7_1:-11215827 Msa1009560:CDS
AAGTTAAGTGGCAGCCAACT+TGG 0.439945 7_1:-11215388 Msa1009560:CDS
GAAATGTTTGTAAAGTTAAG+TGG 0.449292 7_1:-11215400 Msa1009560:CDS
AGTTTAGTCTTATGTTACTT+TGG 0.456396 7_1:-11215162 Msa1009560:three_prime_UTR
TGGTTATTTATCATAAAAGA+TGG 0.468935 7_1:-11215089 Msa1009560:three_prime_UTR
CGCGTGTGACGAAAATCAAC+AGG 0.474646 7_1:-11217975 Msa1009560:intron
TTCAGAATCACTGGTAATGC+TGG 0.482229 7_1:+11215066 None:intergenic
GAGATGGAAGTGGAATATAA+TGG 0.485881 7_1:-11215640 Msa1009560:CDS
CAAATGTTATAGGGCGGCAA+AGG 0.495945 7_1:-11215818 Msa1009560:CDS
GATGATGAAGATGGGCTCAC+TGG 0.503503 7_1:+11216141 None:intergenic
ACCAGTGATTCTGAACTTCA+GGG 0.504024 7_1:-11215058 Msa1009560:three_prime_UTR
TGATGTGATTCTTATGTTGA+AGG 0.505243 7_1:-11217115 Msa1009560:five_prime_UTR
TTCTTATATTATAAGAGAAG+CGG 0.510839 7_1:-11218216 None:intergenic
TTGTAGGTTTAAGTTAGAGA+TGG 0.513043 7_1:-11215656 Msa1009560:intron
CTATAGAAACAAAAGAGATT+GGG 0.515222 7_1:+11217256 None:intergenic
AATTAATCAATCGCCGTATG+TGG 0.516337 7_1:-11214699 Msa1009560:three_prime_UTR
GTTTAAGTTAGAGATGGAAG+TGG 0.518694 7_1:-11215650 Msa1009560:CDS
ACGAACTGTGATATCAGATC+TGG 0.519162 7_1:-11218173 Msa1009560:intron
ACCCTGAAGTTCAGAATCAC+TGG 0.520945 7_1:+11215057 None:intergenic
TTCGTTGCAACTACTTCAAG+AGG 0.523500 7_1:+11218191 None:intergenic
TCTATTTCTATCTATGTACT+GGG 0.524926 7_1:-11216819 Msa1009560:five_prime_UTR
AAAGTGAAACCATCAAAGAA+TGG 0.537737 7_1:-11215869 Msa1009560:exon
TAGTGATTAGAATAAACAAA+AGG 0.539249 7_1:+11216873 None:intergenic
AAAGAAATACACAATATGAA+TGG 0.543270 7_1:+11217035 None:intergenic
AAATGTTATAGGGCGGCAAA+GGG 0.559414 7_1:-11215817 Msa1009560:CDS
AACATGGGATCTCTAATGCA+TGG 0.560922 7_1:-11216376 Msa1009560:five_prime_UTR
GAGAATGATGAGTCTTCGAC+AGG 0.561049 7_1:+11216195 None:intergenic
TGTGACAGAGATGATGAAGA+TGG 0.565680 7_1:+11216132 None:intergenic
AGTTAAGTGGCAGCCAACTT+GGG 0.566681 7_1:-11215387 Msa1009560:CDS
GTTCTGTTCAAGGAGGATGA+AGG 0.568696 7_1:-11215358 Msa1009560:exon
ACCATTGTGAAGAAGAATGA+TGG 0.575193 7_1:+11216713 None:intergenic
TATCAATCCTGAAATCCCAT+AGG 0.579861 7_1:-11216336 Msa1009560:five_prime_UTR
ATGATGAAGATGGGCTCACT+GGG 0.582220 7_1:+11216142 None:intergenic
TATCTTCAACCTTGAACACA+TGG 0.591729 7_1:+11217475 None:intergenic
ATGGTGAAGATAGAAGATAA+AGG 0.593300 7_1:-11217655 Msa1009560:five_prime_UTR
AAATGAAATAATGCAACTCA+CGG 0.594077 7_1:-11216061 Msa1009560:five_prime_UTR
AGAGTAAATAGGGCCACATA+CGG 0.595559 7_1:+11214686 None:intergenic
TTTATAGAGAAGTATGAACA+TGG 0.603096 7_1:-11216392 Msa1009560:intron
ACAGAACAACTGTCCCAAGT+TGG 0.613921 7_1:+11215374 None:intergenic
AAACCTTAGATTGATAACAT+TGG 0.621112 7_1:+11215756 None:intergenic
TCACAGAAAGCAGACAGTGT+TGG 0.629389 7_1:+11214923 None:intergenic
ACCATCATTCTTCTTCACAA+TGG 0.635895 7_1:-11216714 Msa1009560:intron
GTGACAGAGATGATGAAGAT+GGG 0.640666 7_1:+11216133 None:intergenic
CTATTTCTATCTATGTACTG+GGG 0.649914 7_1:-11216818 Msa1009560:five_prime_UTR
GACAGTTGTTCTGTTCAAGG+AGG 0.654985 7_1:-11215365 Msa1009560:CDS
TGAACAAACACACTTTATCG+TGG 0.656999 7_1:+11216931 None:intergenic
TTATAGAGAAGTATGAACAT+GGG 0.666382 7_1:-11216391 Msa1009560:intron
ATGTGTCAAATGTTATAGGG+CGG 0.686190 7_1:-11215824 Msa1009560:CDS
TGAAATAATGCAACTCACGG+AGG 0.707979 7_1:-11216058 Msa1009560:intron
TTGTGAAGAAGAATGATGGT+TGG 0.724119 7_1:+11216717 None:intergenic
GCATGTTTGAAAATATGACA+TGG 0.728799 7_1:-11215109 Msa1009560:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCAAAAAAAAAAAAAAAA+AGG + chr7_1:11214892-11214911 None:intergenic 10.0%
!! TGAAAAAAAAATTGATGAAA+TGG + chr7_1:11214992-11215011 None:intergenic 15.0%
!! AATAAAAATAAGGAATTGAA+TGG + chr7_1:11215253-11215272 None:intergenic 15.0%
!! AGCATACAAAAATAAAAATA+AGG + chr7_1:11215263-11215282 None:intergenic 15.0%
!!! ATTTTTTTTCAATCAAAAGA+AGG + chr7_1:11215826-11215845 None:intergenic 15.0%
!! TGTTATATTATTTATAGATC+AGG + chr7_1:11216192-11216211 None:intergenic 15.0%
!! TTAGAAAGATGTTATAATTA+CGG + chr7_1:11217329-11217348 None:intergenic 15.0%
!! AAAAAATAGTAGAGTAAATA+GGG + chr7_1:11218149-11218168 None:intergenic 15.0%
!! TAGAAAAGGGAAAAAAATAT+TGG + chr7_1:11214683-11214702 None:intergenic 20.0%
!! TGCATCAATAATATAGAAAA+GGG + chr7_1:11214696-11214715 None:intergenic 20.0%
!! ATGCATCAATAATATAGAAA+AGG + chr7_1:11214697-11214716 None:intergenic 20.0%
!! TATTATTGATGCATATTTGT+TGG - chr7_1:11214703-11214722 Msa1009560:three_prime_UTR 20.0%
!! CTATAGTGCAAAAAAAAAAA+AGG - chr7_1:11215583-11215602 Msa1009560:intron 20.0%
!!! TTAATTTTGTAAGTCAATCA+TGG + chr7_1:11215648-11215667 None:intergenic 20.0%
!! AAAGAAATACACAATATGAA+TGG + chr7_1:11215790-11215809 None:intergenic 20.0%
!!! TTTTTTCTATTGCAATTTGT+TGG + chr7_1:11215862-11215881 None:intergenic 20.0%
!! TAGTGATTAGAATAAACAAA+AGG + chr7_1:11215952-11215971 None:intergenic 20.0%
!! CATAGTAAAAAATAATTGTG+AGG + chr7_1:11216348-11216367 None:intergenic 20.0%
!! AAAAATTGTAGTAAACAAAC+AGG + chr7_1:11216589-11216608 None:intergenic 20.0%
!!! CAATTTTTGCAAATGTATTT+AGG - chr7_1:11216601-11216620 Msa1009560:intron 20.0%
!!! TAGCCAAGTTTTTTTTTTTT+GGG - chr7_1:11217210-11217229 Msa1009560:intron 20.0%
!! TTTATGTTCATACGAATTAT+AGG - chr7_1:11217568-11217587 Msa1009560:intron 20.0%
!! TTATGTTCATACGAATTATA+GGG - chr7_1:11217569-11217588 Msa1009560:intron 20.0%
!! TGGTTATTTATCATAAAAGA+TGG - chr7_1:11217733-11217752 Msa1009560:intron 20.0%
!! TCAGGTTATATAGTTTATTT+AGG - chr7_1:11217822-11217841 Msa1009560:intron 20.0%
!! CTATAGTCTAAAAACTAAAA+TGG + chr7_1:11218092-11218111 None:intergenic 20.0%
!! CAAAAAATAGTAGAGTAAAT+AGG + chr7_1:11218150-11218169 None:intergenic 20.0%
!!! ATAGTTGTTTTAGAGCAAAA+GGG + chr7_1:11214764-11214783 None:intergenic 25.0%
!!! AATAGTTGTTTTAGAGCAAA+AGG + chr7_1:11214765-11214784 None:intergenic 25.0%
!!! GATTAAAGTTTTGTTGTTGT+TGG - chr7_1:11215016-11215035 Msa1009560:intron 25.0%
! TTTCTACGATGCAAAAAAAA+AGG - chr7_1:11215398-11215417 Msa1009560:CDS 25.0%
! TCAACAAATTCAGAAATGAA+AGG + chr7_1:11215439-11215458 None:intergenic 25.0%
!!! TGTTGTGATTCTTATTTTGA+AGG - chr7_1:11215520-11215539 Msa1009560:intron 25.0%
!!! ATTCTTATTTTGAAGGTTGA+AGG - chr7_1:11215527-11215546 Msa1009560:intron 25.0%
! CTATAGAAACAAAAGAGATT+GGG + chr7_1:11215569-11215588 None:intergenic 25.0%
! ACTATAGAAACAAAAGAGAT+TGG + chr7_1:11215570-11215589 None:intergenic 25.0%
!! TTTTGACATGATTTAGATCA+AGG - chr7_1:11215754-11215773 Msa1009560:intron 25.0%
!!! TTCTATTTCTATCTATGTAC+TGG - chr7_1:11216002-11216021 Msa1009560:intron 25.0%
!!! TCTATTTCTATCTATGTACT+GGG - chr7_1:11216003-11216022 Msa1009560:intron 25.0%
! TTATTTATAGATCAGGTATG+TGG + chr7_1:11216185-11216204 None:intergenic 25.0%
!! TTTATAGAGAAGTATGAACA+TGG - chr7_1:11216430-11216449 Msa1009560:intron 25.0%
!! TTATAGAGAAGTATGAACAT+GGG - chr7_1:11216431-11216450 Msa1009560:intron 25.0%
!! TTTTGAATTCTATGACCTAT+GGG + chr7_1:11216504-11216523 None:intergenic 25.0%
!! TTTTTGAATTCTATGACCTA+TGG + chr7_1:11216505-11216524 None:intergenic 25.0%
! TAGGTCATAGAATTCAAAAA+AGG - chr7_1:11216505-11216524 Msa1009560:intron 25.0%
! AGGTCATAGAATTCAAAAAA+GGG - chr7_1:11216506-11216525 Msa1009560:intron 25.0%
! AGTTGCATTATTTCATTTAG+TGG + chr7_1:11216759-11216778 None:intergenic 25.0%
! AAATGAAATAATGCAACTCA+CGG - chr7_1:11216761-11216780 Msa1009560:five_prime_UTR 25.0%
!! AAACCTTAGATTGATAACAT+TGG + chr7_1:11217069-11217088 None:intergenic 25.0%
! AACTTAAACCTACAATACAT+GGG + chr7_1:11217161-11217180 None:intergenic 25.0%
! TAACTTAAACCTACAATACA+TGG + chr7_1:11217162-11217181 None:intergenic 25.0%
!!! GTAGCCAAGTTTTTTTTTTT+TGG - chr7_1:11217209-11217228 Msa1009560:intron 25.0%
! GATCCCAAAAAAAAAAAACT+TGG + chr7_1:11217216-11217235 None:intergenic 25.0%
! TACGGAAGTTTAACATAATA+AGG + chr7_1:11217311-11217330 None:intergenic 25.0%
! AGCAAAATTGGATATTCTAA+TGG + chr7_1:11217385-11217404 None:intergenic 25.0%
!! ATTAGAATATCCAATTTTGC+TGG - chr7_1:11217384-11217403 Msa1009560:intron 25.0%
! GAAATGTTTGTAAAGTTAAG+TGG - chr7_1:11217422-11217441 Msa1009560:intron 25.0%
! ATCCTAAACAAATAGCAAAA+TGG + chr7_1:11217609-11217628 None:intergenic 25.0%
!!! TTGTTTAGGATGATCAATTT+TGG - chr7_1:11217618-11217637 Msa1009560:five_prime_UTR 25.0%
!!! TGTTTAGGATGATCAATTTT+GGG - chr7_1:11217619-11217638 Msa1009560:five_prime_UTR 25.0%
!!! AGTTTAGTCTTATGTTACTT+TGG - chr7_1:11217660-11217679 Msa1009560:five_prime_UTR 25.0%
! TAACTTTGTTGAAGATTGTT+TGG + chr7_1:11218019-11218038 None:intergenic 25.0%
! AACAATCTTCAACAAAGTTA+AGG - chr7_1:11218019-11218038 Msa1009560:five_prime_UTR 25.0%
!! TGTACTAAGTGTTTTTGTTG+TGG - chr7_1:11214736-11214755 Msa1009560:three_prime_UTR 30.0%
!! TGCTCTAAAACAACTATTGT+TGG - chr7_1:11214767-11214786 Msa1009560:three_prime_UTR 30.0%
GAGTTTGACATGAAAACAAA+AGG + chr7_1:11214957-11214976 None:intergenic 30.0%
AAAGAAAGTTCACTACTTCA+TGG - chr7_1:11215148-11215167 Msa1009560:three_prime_UTR 30.0%
ATGGTGAAGATAGAAGATAA+AGG - chr7_1:11215167-11215186 Msa1009560:three_prime_UTR 30.0%
! AAGGAATTGAATGGTTAGTT+CGG + chr7_1:11215244-11215263 None:intergenic 30.0%
TGATGTGATTCTTATGTTGA+AGG - chr7_1:11215707-11215726 Msa1009560:intron 30.0%
!! CTATTTCTATCTATGTACTG+GGG - chr7_1:11216004-11216023 Msa1009560:intron 30.0%
TCTTCACAATGGTAAGATTA+AGG - chr7_1:11216119-11216138 Msa1009560:five_prime_UTR 30.0%
TGTGACTTATTAGTAACATG+TGG + chr7_1:11216148-11216167 None:intergenic 30.0%
!! TCGTCTTTTGAGAGATTTAT+TGG - chr7_1:11216717-11216736 Msa1009560:five_prime_UTR 30.0%
TGTTCAGGTCATAATAATGT+AGG + chr7_1:11216869-11216888 None:intergenic 30.0%
AAAGTGAAACCATCAAAGAA+TGG - chr7_1:11216953-11216972 Msa1009560:five_prime_UTR 30.0%
TAGTATCAACCATTCTTTGA+TGG + chr7_1:11216965-11216984 None:intergenic 30.0%
AAGCATGTGTCAAATGTTAT+AGG - chr7_1:11216994-11217013 Msa1009560:five_prime_UTR 30.0%
AGCATGTGTCAAATGTTATA+GGG - chr7_1:11216995-11217014 Msa1009560:five_prime_UTR 30.0%
AGACCAATGTTATCAATCTA+AGG - chr7_1:11217063-11217082 Msa1009560:five_prime_UTR 30.0%
ATTTACTACCCATGTATTGT+AGG - chr7_1:11217150-11217169 Msa1009560:intron 30.0%
! TTGTAGGTTTAAGTTAGAGA+TGG - chr7_1:11217166-11217185 Msa1009560:intron 30.0%
AGAATTGTTCCGAAAAATTC+AGG - chr7_1:11217506-11217525 Msa1009560:intron 30.0%
! ATAACCTGACCTGAATTTTT+CGG + chr7_1:11217518-11217537 None:intergenic 30.0%
!!! CACCATTTTGCTATTTGTTT+AGG - chr7_1:11217604-11217623 Msa1009560:intron 30.0%
GCATGTTTGAAAATATGACA+TGG - chr7_1:11217713-11217732 Msa1009560:intron 30.0%
CTGTATGTTTCTTTAGATTC+AGG - chr7_1:11217804-11217823 Msa1009560:intron 30.0%
ACCAAAAACAACATTGTTTG+GGG + chr7_1:11218198-11218217 None:intergenic 30.0%
GACCAAAAACAACATTGTTT+GGG + chr7_1:11218199-11218218 None:intergenic 30.0%
AGACCAAAAACAACATTGTT+TGG + chr7_1:11218200-11218219 None:intergenic 30.0%
AGAACAACATAGATCTGACA+TGG + chr7_1:11215324-11215343 None:intergenic 35.0%
TGTTCTTATCCATGTGTTCA+AGG - chr7_1:11215338-11215357 Msa1009560:three_prime_UTR 35.0%
TATCTTCAACCTTGAACACA+TGG + chr7_1:11215350-11215369 None:intergenic 35.0%
TGAACAAACACACTTTATCG+TGG + chr7_1:11215894-11215913 None:intergenic 35.0%
ACAAAGAACAATGCTGAATC+TGG - chr7_1:11216081-11216100 Msa1009560:five_prime_UTR 35.0%
TTGTGAAGAAGAATGATGGT+TGG + chr7_1:11216108-11216127 None:intergenic 35.0%
ACCATCATTCTTCTTCACAA+TGG - chr7_1:11216108-11216127 Msa1009560:five_prime_UTR 35.0%
ACCATTGTGAAGAAGAATGA+TGG + chr7_1:11216112-11216131 None:intergenic 35.0%
ATGCACGGGGAATTATAAAT+TGG + chr7_1:11216321-11216340 None:intergenic 35.0%
TATCAATCCTGAAATCCCAT+AGG - chr7_1:11216486-11216505 Msa1009560:intron 35.0%
ACATACTTGGCTTATGATCT+TGG + chr7_1:11216560-11216579 None:intergenic 35.0%
AAACAGGATTGCAACATACT+TGG + chr7_1:11216573-11216592 None:intergenic 35.0%
GCAACAAATCAGAAATGTTC+AGG + chr7_1:11216884-11216903 None:intergenic 35.0%
ATGTGTCAAATGTTATAGGG+CGG - chr7_1:11216998-11217017 Msa1009560:five_prime_UTR 35.0%
CATGCATGTTGACAAGATAT+TGG - chr7_1:11217105-11217124 Msa1009560:five_prime_UTR 35.0%
! GTTTAAGTTAGAGATGGAAG+TGG - chr7_1:11217172-11217191 Msa1009560:intron 35.0%
GAGATGGAAGTGGAATATAA+TGG - chr7_1:11217182-11217201 Msa1009560:intron 35.0%
CTAACAAATGCACTGCATTT+AGG - chr7_1:11217345-11217364 Msa1009560:intron 35.0%
!!! ATTTTGGGTGTTGAAGATGT+TGG - chr7_1:11217634-11217653 Msa1009560:five_prime_UTR 35.0%
AATTAATCAATCGCCGTATG+TGG - chr7_1:11218123-11218142 Msa1009560:intron 35.0%
!!! ACCCCAAACAATGTTGTTTT+TGG - chr7_1:11218194-11218213 Msa1009560:five_prime_UTR 35.0%
TTCGTTGCAACTACTTCAAG+AGG + chr7_1:11214634-11214653 None:intergenic 40.0%
ACGAACTGTGATATCAGATC+TGG - chr7_1:11214649-11214668 Msa1009560:three_prime_UTR 40.0%
!!! TACTGCTGCTTGCTCTTTTT+TGG - chr7_1:11215112-11215131 Msa1009560:three_prime_UTR 40.0%
TAATTGTGAGGTAGCATGCA+CGG + chr7_1:11216336-11216355 None:intergenic 40.0%
AACATGGGATCTCTAATGCA+TGG - chr7_1:11216446-11216465 Msa1009560:intron 40.0%
TCTATGACCTATGGGATTTC+AGG + chr7_1:11216496-11216515 None:intergenic 40.0%
GTGACAGAGATGATGAAGAT+GGG + chr7_1:11216692-11216711 None:intergenic 40.0%
TGTGACAGAGATGATGAAGA+TGG + chr7_1:11216693-11216712 None:intergenic 40.0%
TGAAATAATGCAACTCACGG+AGG - chr7_1:11216764-11216783 Msa1009560:five_prime_UTR 40.0%
AAATGTTATAGGGCGGCAAA+GGG - chr7_1:11217005-11217024 Msa1009560:five_prime_UTR 40.0%
!! ACATTGGTCTCATGCTTTTC+AGG + chr7_1:11217053-11217072 None:intergenic 40.0%
!! TCGAGTTGATCCAGCAAAAT+TGG + chr7_1:11217397-11217416 None:intergenic 40.0%
TGTTCCGAAAAATTCAGGTC+AGG - chr7_1:11217511-11217530 Msa1009560:intron 40.0%
! TTCAGAATCACTGGTAATGC+TGG + chr7_1:11217759-11217778 None:intergenic 40.0%
TACCAGTGATTCTGAACTTC+AGG - chr7_1:11217763-11217782 Msa1009560:intron 40.0%
ACCAGTGATTCTGAACTTCA+GGG - chr7_1:11217764-11217783 Msa1009560:intron 40.0%
TCTTCGCTAACACCAGAAAA+AGG - chr7_1:11217941-11217960 Msa1009560:intron 40.0%
CTTCGCTAACACCAGAAAAA+GGG - chr7_1:11217942-11217961 Msa1009560:intron 40.0%
! AGAATCTGCAACCCTTTTTC+TGG + chr7_1:11217956-11217975 None:intergenic 40.0%
AGAGTAAATAGGGCCACATA+CGG + chr7_1:11218139-11218158 None:intergenic 40.0%
!!! CTGTTGATTTTCGTCACACG+CGG + chr7_1:11214849-11214868 None:intergenic 45.0%
AATTGTGAGGTAGCATGCAC+GGG + chr7_1:11216335-11216354 None:intergenic 45.0%
GAGAATGATGAGTCTTCGAC+AGG + chr7_1:11216630-11216649 None:intergenic 45.0%
! ATGATGAAGATGGGCTCACT+GGG + chr7_1:11216683-11216702 None:intergenic 45.0%
CAAATGTTATAGGGCGGCAA+AGG - chr7_1:11217004-11217023 Msa1009560:five_prime_UTR 45.0%
!! TGCTTTTCAGGACACAACAG+AGG + chr7_1:11217041-11217060 None:intergenic 45.0%
CGTGAGTGAAATGAGTTGCT+TGG - chr7_1:11217235-11217254 Msa1009560:intron 45.0%
TACAACTGCAGACCTTCACA+GGG - chr7_1:11217261-11217280 Msa1009560:five_prime_UTR 45.0%
CAAATGCACTGCATTTAGGC+TGG - chr7_1:11217349-11217368 Msa1009560:intron 45.0%
AAGTTAAGTGGCAGCCAACT+TGG - chr7_1:11217434-11217453 Msa1009560:five_prime_UTR 45.0%
AGTTAAGTGGCAGCCAACTT+GGG - chr7_1:11217435-11217454 Msa1009560:five_prime_UTR 45.0%
ACAGAACAACTGTCCCAAGT+TGG + chr7_1:11217451-11217470 None:intergenic 45.0%
TGGGACAGTTGTTCTGTTCA+AGG - chr7_1:11217454-11217473 Msa1009560:five_prime_UTR 45.0%
GACAGTTGTTCTGTTCAAGG+AGG - chr7_1:11217457-11217476 Msa1009560:five_prime_UTR 45.0%
GTTCTGTTCAAGGAGGATGA+AGG - chr7_1:11217464-11217483 Msa1009560:five_prime_UTR 45.0%
ACCCTGAAGTTCAGAATCAC+TGG + chr7_1:11217768-11217787 None:intergenic 45.0%
TCACAGAAAGCAGACAGTGT+TGG + chr7_1:11217902-11217921 None:intergenic 45.0%
!! ATAAAATAATAAGAAATATA+AGG + chr7_1:11215624-11215643 None:intergenic 5.0%
!! AAAGAATTATTAAAATTTAT+AGG + chr7_1:11216248-11216267 None:intergenic 5.0%
CGCGTGTGACGAAAATCAAC+AGG - chr7_1:11214847-11214866 Msa1009560:three_prime_UTR 50.0%
ATTGTGAGGTAGCATGCACG+GGG + chr7_1:11216334-11216353 None:intergenic 50.0%
! GATGATGAAGATGGGCTCAC+TGG + chr7_1:11216684-11216703 None:intergenic 50.0%
CTACAACTGCAGACCTTCAC+AGG - chr7_1:11217260-11217279 Msa1009560:five_prime_UTR 50.0%
CGTCACACGCGGTCATTGAA+TGG + chr7_1:11214838-11214857 None:intergenic 55.0%
CCTCAGTCACGACCCTGTGA+AGG + chr7_1:11217276-11217295 None:intergenic 60.0%
CCTTCACAGGGTCGTGACTG+AGG - chr7_1:11217273-11217292 Msa1009560:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 11214612 11218232 11214612 ID=Msa1009560;Name=Msa1009560
chr7_1 mRNA 11214612 11218232 11214612 ID=Msa1009560-mRNA-1;Parent=Msa1009560;Name=Msa1009560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1105|0.90|0.91|1|0.27|0.16|12|656|97
chr7_1 exon 11214612 11214945 11214612 ID=Msa1009560-mRNA-1:exon:3003;Parent=Msa1009560-mRNA-1
chr7_1 exon 11215039 11215477 11215039 ID=Msa1009560-mRNA-1:exon:3002;Parent=Msa1009560-mRNA-1
chr7_1 exon 11215609 11215672 11215609 ID=Msa1009560-mRNA-1:exon:3001;Parent=Msa1009560-mRNA-1
chr7_1 exon 11215760 11215924 11215760 ID=Msa1009560-mRNA-1:exon:3000;Parent=Msa1009560-mRNA-1
chr7_1 exon 11216059 11216221 11216059 ID=Msa1009560-mRNA-1:exon:2999;Parent=Msa1009560-mRNA-1
chr7_1 exon 11216317 11216407 11216317 ID=Msa1009560-mRNA-1:exon:2998;Parent=Msa1009560-mRNA-1
chr7_1 exon 11216715 11217145 11216715 ID=Msa1009560-mRNA-1:exon:2997;Parent=Msa1009560-mRNA-1
chr7_1 exon 11217240 11217302 11217240 ID=Msa1009560-mRNA-1:exon:2996;Parent=Msa1009560-mRNA-1
chr7_1 exon 11217425 11217514 11217425 ID=Msa1009560-mRNA-1:exon:2995;Parent=Msa1009560-mRNA-1
chr7_1 exon 11217611 11217702 11217611 ID=Msa1009560-mRNA-1:exon:2994;Parent=Msa1009560-mRNA-1
chr7_1 exon 11217976 11218039 11217976 ID=Msa1009560-mRNA-1:exon:2993;Parent=Msa1009560-mRNA-1
chr7_1 exon 11218174 11218232 11218174 ID=Msa1009560-mRNA-1:exon:2992;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11218174 11218232 11218174 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11217976 11218039 11217976 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11217611 11217702 11217611 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11217425 11217514 11217425 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11217240 11217302 11217240 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11216715 11217145 11216715 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11216317 11216407 11216317 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11216059 11216221 11216059 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 five_prime_UTR 11215873 11215924 11215873 ID=Msa1009560-mRNA-1:five_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 CDS 11215760 11215872 11215760 ID=Msa1009560-mRNA-1:cds;Parent=Msa1009560-mRNA-1
chr7_1 CDS 11215609 11215672 11215609 ID=Msa1009560-mRNA-1:cds;Parent=Msa1009560-mRNA-1
chr7_1 CDS 11215361 11215477 11215361 ID=Msa1009560-mRNA-1:cds;Parent=Msa1009560-mRNA-1
chr7_1 three_prime_UTR 11215039 11215360 11215039 ID=Msa1009560-mRNA-1:three_prime_utr;Parent=Msa1009560-mRNA-1
chr7_1 three_prime_UTR 11214612 11214945 11214612 ID=Msa1009560-mRNA-1:three_prime_utr;Parent=Msa1009560-mRNA-1
Gene Sequence

>Msa1009560

ATGGTTGATACTACAAAGTACAAAGCATGTGTCAAATGTTATAGGGCGGCAAAGGGTGATGTTTTACCTCTGTTGTGTCCTGAAAAGCATGAGACCAATGTTATCAATCTAAGGTTTAAGTTAGAGATGGAAGTGGAATATAATGGAGTCGTAGCCAAGTTTTTTTTTTTTGGGATCGCTGGCGTCACAAATCCATTAGAATATCCAATTTTGCTGGATCAACTCGAACATAGAAATGTTTGTAAAGTTAAGTGGCAGCCAACTTGGGACAGTTGTTCTGTTCAAGGAGGATGA
Protein sequence

>Msa1009560

MVDTTKYKACVKCYRAAKGDVLPLLCPEKHETNVINLRFKLEMEVEYNGVVAKFFFFGIAGVTNPLEYPILLDQLEHRNVCKVKWQPTWDSCSVQGG*