Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520410 | XP_024630493.2 | 63.366 | 101 | 17 | 2 | 16 | 96 | 265 | 365 | 1.08e-32 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520410 | A0A392LYB5 | 43.636 | 110 | 42 | 2 | 7 | 96 | 77 | 186 | 2.03e-20 | 92.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0520410 | 0.848119 | 7.508966e-60 | -8.615850e-47 |
| Msa0065500 | Msa0520410 | 0.808105 | 3.647197e-50 | -8.615850e-47 |
| Msa0087010 | Msa0520410 | 0.847623 | 1.028296e-59 | -8.615850e-47 |
| Msa0087020 | Msa0520410 | 0.801413 | 9.112669e-49 | -8.615850e-47 |
| Msa0094760 | Msa0520410 | 0.871858 | 4.959214e-67 | -8.615850e-47 |
| Msa0157210 | Msa0520410 | 0.800186 | 1.622090e-48 | -8.615850e-47 |
| Msa0320120 | Msa0520410 | 0.838315 | 3.093528e-57 | -8.615850e-47 |
| Msa0520410 | Msa0542240 | 0.868697 | 5.385984e-66 | -8.615850e-47 |
| Msa0520410 | Msa0606960 | 0.848425 | 6.180371e-60 | -8.615850e-47 |
| Msa0520410 | Msa0649960 | 0.819799 | 9.605802e-53 | -8.615850e-47 |
| Msa0520410 | Msa0655670 | 0.839889 | 1.209779e-57 | -8.615850e-47 |
| Msa0520410 | Msa1003060 | 0.858282 | 9.167395e-63 | -8.615850e-47 |
| Msa0520410 | Msa1009560 | 0.991764 | 2.064196e-189 | -8.615850e-47 |
| Msa0520410 | Msa1153980 | 0.814242 | 1.702623e-51 | -8.615850e-47 |
| Msa0520410 | Msa1179770 | 0.811577 | 6.531784e-51 | -8.615850e-47 |
| Msa0520410 | Msa1306260 | 0.990963 | 3.393084e-185 | -8.615850e-47 |
| Msa0520410 | Msa1405570 | 0.984793 | 1.326504e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520410 | MtrunA17_Chr5g0393521 | 39.316 | 117 | 47 | 4 | 2 | 94 | 53 | 169 | 9.74e-16 | 70.1 |
| Msa0520410 | MtrunA17_Chr1g0167871 | 38.462 | 117 | 48 | 4 | 2 | 94 | 500 | 616 | 1.04e-15 | 70.9 |
| Msa0520410 | MtrunA17_Chr5g0417421 | 38.462 | 117 | 48 | 4 | 2 | 94 | 121 | 237 | 2.62e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGACCTATGGGATTTC+AGG | 0.142267 | 3_4:+72961038 | None:intergenic |
| TTGTTTAGGATGATCAATTT+TGG | 0.186172 | 3_4:-72959913 | Msa0520410:three_prime_UTR |
| TCTTCGCTAACACCAGAAAA+AGG | 0.217962 | 3_4:-72959590 | Msa0520410:three_prime_UTR |
| TCGAGTTGATCCAGCAAAAT+TGG | 0.244680 | 3_4:+72960137 | None:intergenic |
| TTTATGTTCATACGAATTAT+AGG | 0.258066 | 3_4:-72959963 | Msa0520410:three_prime_UTR |
| TACCAGTGATTCTGAACTTC+AGG | 0.282604 | 3_4:-72959768 | Msa0520410:three_prime_UTR |
| AGCAAAATTGGATATTCTAA+TGG | 0.286408 | 3_4:+72960149 | None:intergenic |
| TTCTATTTCTATCTATGTAC+TGG | 0.315789 | 3_4:-72961529 | Msa0520410:five_prime_UTR |
| AGACCAATGTTATCAATCTA+AGG | 0.317503 | 3_4:-72960468 | Msa0520410:intron |
| TTATGTTCATACGAATTATA+GGG | 0.319659 | 3_4:-72959962 | Msa0520410:three_prime_UTR |
| TAGTATCAACCATTCTTTGA+TGG | 0.327014 | 3_4:+72960569 | None:intergenic |
| AAGCATGTGTCAAATGTTAT+AGG | 0.330903 | 3_4:-72960537 | Msa0520410:CDS |
| ATCCTAAACAAATAGCAAAA+TGG | 0.349955 | 3_4:+72959925 | None:intergenic |
| AACTCACTTCAGCTTGAGTA+TGG | 0.353110 | 3_4:+72963115 | None:intergenic |
| ACAAAGAACAATGCTGAATC+TGG | 0.353144 | 3_4:-72961450 | Msa0520410:five_prime_UTR |
| AGTTGCATTATTTCATTTAG+TGG | 0.354080 | 3_4:+72960775 | None:intergenic |
| TAACTTTGTTGAAGATTGTT+TGG | 0.360834 | 3_4:+72959515 | None:intergenic |
| CGTCACACGCGGTCATTGAA+TGG | 0.360842 | 3_4:+72962696 | None:intergenic |
| AAAGAAAGTTCACTACTTCA+TGG | 0.370738 | 3_4:-72962382 | Msa0520410:five_prime_UTR |
| TGGGACAGTTGTTCTGTTCA+AGG | 0.400212 | 3_4:-72960077 | Msa0520410:CDS |
| ACTATAGAAACAAAAGAGAT+TGG | 0.417735 | 3_4:+72961963 | None:intergenic |
| TGTTCTTATCCATGTGTTCA+AGG | 0.427610 | 3_4:-72962192 | Msa0520410:five_prime_UTR |
| AACAATCTTCAACAAAGTTA+AGG | 0.430707 | 3_4:-72959512 | Msa0520410:three_prime_UTR |
| AGCATGTGTCAAATGTTATA+GGG | 0.439555 | 3_4:-72960536 | Msa0520410:CDS |
| AAGTTAAGTGGCAGCCAACT+TGG | 0.439945 | 3_4:-72960097 | Msa0520410:CDS |
| GAAATGTTTGTAAAGTTAAG+TGG | 0.449292 | 3_4:-72960109 | Msa0520410:CDS |
| AGTTTAGTCTTATGTTACTT+TGG | 0.456396 | 3_4:-72959871 | Msa0520410:three_prime_UTR |
| TGGTTATTTATCATAAAAGA+TGG | 0.468935 | 3_4:-72959798 | Msa0520410:three_prime_UTR |
| CGCGTGTGACGAAAATCAAC+AGG | 0.474646 | 3_4:-72962684 | Msa0520410:intron |
| TTCAGAATCACTGGTAATGC+TGG | 0.482229 | 3_4:+72959775 | None:intergenic |
| GAGATGGAAGTGGAATATAA+TGG | 0.485881 | 3_4:-72960349 | Msa0520410:CDS |
| CAAATGTTATAGGGCGGCAA+AGG | 0.495945 | 3_4:-72960527 | Msa0520410:CDS |
| GATGATGAAGATGGGCTCAC+TGG | 0.503503 | 3_4:+72960850 | None:intergenic |
| ACCAGTGATTCTGAACTTCA+GGG | 0.504024 | 3_4:-72959767 | Msa0520410:three_prime_UTR |
| GTATGGAAGAGAGAGAGGCT+TGG | 0.504350 | 3_4:+72963132 | None:intergenic |
| TGATGTGATTCTTATGTTGA+AGG | 0.505243 | 3_4:-72961824 | Msa0520410:five_prime_UTR |
| TTGTAGGTTTAAGTTAGAGA+TGG | 0.513043 | 3_4:-72960365 | Msa0520410:intron |
| CTATAGAAACAAAAGAGATT+GGG | 0.515222 | 3_4:+72961964 | None:intergenic |
| AATTAATCAATCGCCGTATG+TGG | 0.516337 | 3_4:-72959408 | Msa0520410:three_prime_UTR |
| GTTTAAGTTAGAGATGGAAG+TGG | 0.518694 | 3_4:-72960359 | Msa0520410:CDS |
| ACGAACTGTGATATCAGATC+TGG | 0.519162 | 3_4:-72962882 | Msa0520410:intron |
| ACCCTGAAGTTCAGAATCAC+TGG | 0.520945 | 3_4:+72959766 | None:intergenic |
| TTCGTTGCAACTACTTCAAG+AGG | 0.523500 | 3_4:+72962900 | None:intergenic |
| TCTATTTCTATCTATGTACT+GGG | 0.524926 | 3_4:-72961528 | Msa0520410:five_prime_UTR |
| AAAGTGAAACCATCAAAGAA+TGG | 0.537737 | 3_4:-72960578 | Msa0520410:exon |
| TAGTGATTAGAATAAACAAA+AGG | 0.539249 | 3_4:+72961582 | None:intergenic |
| AAAGAAATACACAATATGAA+TGG | 0.543270 | 3_4:+72961744 | None:intergenic |
| AAATGTTATAGGGCGGCAAA+GGG | 0.559414 | 3_4:-72960526 | Msa0520410:CDS |
| AACATGGGATCTCTAATGCA+TGG | 0.560922 | 3_4:-72961085 | Msa0520410:five_prime_UTR |
| GAGAATGATGAGTCTTCGAC+AGG | 0.561049 | 3_4:+72960904 | None:intergenic |
| CTTGAGTATGGAAGAGAGAG+AGG | 0.561484 | 3_4:+72963127 | None:intergenic |
| TGTGACAGAGATGATGAAGA+TGG | 0.565680 | 3_4:+72960841 | None:intergenic |
| AGTTAAGTGGCAGCCAACTT+GGG | 0.566681 | 3_4:-72960096 | Msa0520410:CDS |
| GTTCTGTTCAAGGAGGATGA+AGG | 0.568696 | 3_4:-72960067 | Msa0520410:exon |
| ACCATTGTGAAGAAGAATGA+TGG | 0.575193 | 3_4:+72961422 | None:intergenic |
| TATCAATCCTGAAATCCCAT+AGG | 0.579861 | 3_4:-72961045 | Msa0520410:five_prime_UTR |
| ATGATGAAGATGGGCTCACT+GGG | 0.582220 | 3_4:+72960851 | None:intergenic |
| TATCTTCAACCTTGAACACA+TGG | 0.591729 | 3_4:+72962183 | None:intergenic |
| ATGGTGAAGATAGAAGATAA+AGG | 0.593300 | 3_4:-72962363 | Msa0520410:five_prime_UTR |
| AAATGAAATAATGCAACTCA+CGG | 0.594077 | 3_4:-72960770 | Msa0520410:five_prime_UTR |
| AGAGTAAATAGGGCCACATA+CGG | 0.595559 | 3_4:+72959395 | None:intergenic |
| TTTATAGAGAAGTATGAACA+TGG | 0.603096 | 3_4:-72961101 | Msa0520410:intron |
| ACAGAACAACTGTCCCAAGT+TGG | 0.613921 | 3_4:+72960083 | None:intergenic |
| AAACCTTAGATTGATAACAT+TGG | 0.621112 | 3_4:+72960465 | None:intergenic |
| TCACAGAAAGCAGACAGTGT+TGG | 0.629389 | 3_4:+72959632 | None:intergenic |
| ACCATCATTCTTCTTCACAA+TGG | 0.635895 | 3_4:-72961423 | Msa0520410:intron |
| GTGACAGAGATGATGAAGAT+GGG | 0.640666 | 3_4:+72960842 | None:intergenic |
| CTATTTCTATCTATGTACTG+GGG | 0.649914 | 3_4:-72961527 | Msa0520410:five_prime_UTR |
| GACAGTTGTTCTGTTCAAGG+AGG | 0.654985 | 3_4:-72960074 | Msa0520410:CDS |
| TGAACAAACACACTTTATCG+TGG | 0.656999 | 3_4:+72961640 | None:intergenic |
| TTATAGAGAAGTATGAACAT+GGG | 0.666382 | 3_4:-72961100 | Msa0520410:intron |
| ATGTGTCAAATGTTATAGGG+CGG | 0.686190 | 3_4:-72960533 | Msa0520410:CDS |
| TGAAATAATGCAACTCACGG+AGG | 0.707979 | 3_4:-72960767 | Msa0520410:intron |
| TTGTGAAGAAGAATGATGGT+TGG | 0.724119 | 3_4:+72961426 | None:intergenic |
| GCATGTTTGAAAATATGACA+TGG | 0.728799 | 3_4:-72959818 | Msa0520410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCAAAAAAAAAAAAAAAAA+AGG | + | chr3_4:72959826-72959845 | None:intergenic | 10.0% |
| !! | TGAAAAAAAAATTGATGAAA+TGG | + | chr3_4:72959927-72959946 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAATTGAA+TGG | + | chr3_4:72960188-72960207 | None:intergenic | 15.0% |
| !! | AGCATACAAAAATAAAAATA+AGG | + | chr3_4:72960198-72960217 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCAATCAAAAGA+AGG | + | chr3_4:72960760-72960779 | None:intergenic | 15.0% |
| !! | TGTTATATTATTTATAGATC+AGG | + | chr3_4:72961126-72961145 | None:intergenic | 15.0% |
| !! | TTAGAAAGATGTTATAATTA+CGG | + | chr3_4:72962263-72962282 | None:intergenic | 15.0% |
| !! | AAAAAATAGTAGAGTAAATA+GGG | + | chr3_4:72963083-72963102 | None:intergenic | 15.0% |
| !! | ATAAAGAAAGAAAAAGTAGT+GGG | + | chr3_4:72959379-72959398 | None:intergenic | 20.0% |
| !! | AATAAAGAAAGAAAAAGTAG+TGG | + | chr3_4:72959380-72959399 | None:intergenic | 20.0% |
| !! | AAAGAAATCTAAAGAAAGAA+AGG | + | chr3_4:72959411-72959430 | None:intergenic | 20.0% |
| !!! | AGATTTCTTTTTAAAAGCTT+TGG | - | chr3_4:72959421-72959440 | Msa0520410:three_prime_UTR | 20.0% |
| !! | TAGAAAAGGGAAAAAAATAT+TGG | + | chr3_4:72959617-72959636 | None:intergenic | 20.0% |
| !! | TGCATCAATAATATAGAAAA+GGG | + | chr3_4:72959630-72959649 | None:intergenic | 20.0% |
| !! | ATGCATCAATAATATAGAAA+AGG | + | chr3_4:72959631-72959650 | None:intergenic | 20.0% |
| !! | TATTATTGATGCATATTTGT+TGG | - | chr3_4:72959637-72959656 | Msa0520410:intron | 20.0% |
| !! | TCTATAGTGCAAAAAAAAAA+AGG | - | chr3_4:72960517-72960536 | Msa0520410:CDS | 20.0% |
| !!! | TTAATTTTGTAAGTCAATCA+TGG | + | chr3_4:72960582-72960601 | None:intergenic | 20.0% |
| !! | AAAGAAATACACAATATGAA+TGG | + | chr3_4:72960724-72960743 | None:intergenic | 20.0% |
| !!! | TTTTTTCTATTGCAATTTGT+TGG | + | chr3_4:72960796-72960815 | None:intergenic | 20.0% |
| !! | TAGTGATTAGAATAAACAAA+AGG | + | chr3_4:72960886-72960905 | None:intergenic | 20.0% |
| !! | CATAGTAAAAAATAATTGTG+AGG | + | chr3_4:72961282-72961301 | None:intergenic | 20.0% |
| !! | AAAAATTGTAGTAAACAAAC+AGG | + | chr3_4:72961523-72961542 | None:intergenic | 20.0% |
| !!! | CAATTTTTGCAAATGTATTT+AGG | - | chr3_4:72961535-72961554 | Msa0520410:five_prime_UTR | 20.0% |
| !!! | TAGCCAAGTTTTTTTTTTTT+GGG | - | chr3_4:72962144-72962163 | Msa0520410:five_prime_UTR | 20.0% |
| !! | TTTATGTTCATACGAATTAT+AGG | - | chr3_4:72962502-72962521 | Msa0520410:intron | 20.0% |
| !! | TTATGTTCATACGAATTATA+GGG | - | chr3_4:72962503-72962522 | Msa0520410:intron | 20.0% |
| !! | TGGTTATTTATCATAAAAGA+TGG | - | chr3_4:72962667-72962686 | Msa0520410:intron | 20.0% |
| !! | TCAGGTTATATAGTTTATTT+AGG | - | chr3_4:72962756-72962775 | Msa0520410:intron | 20.0% |
| !! | CTATAGTCTAAAAACTAAAA+TGG | + | chr3_4:72963026-72963045 | None:intergenic | 20.0% |
| !! | CAAAAAATAGTAGAGTAAAT+AGG | + | chr3_4:72963084-72963103 | None:intergenic | 20.0% |
| !! | AAGCTTTTTATTAGTCAAAG+CGG | - | chr3_4:72959540-72959559 | Msa0520410:three_prime_UTR | 25.0% |
| !!! | ATAGTTGTTTTAGAGCAAAA+GGG | + | chr3_4:72959698-72959717 | None:intergenic | 25.0% |
| !!! | AATAGTTGTTTTAGAGCAAA+AGG | + | chr3_4:72959699-72959718 | None:intergenic | 25.0% |
| !!! | GATTAAAGTTTTGTTGTTGT+TGG | - | chr3_4:72959951-72959970 | Msa0520410:three_prime_UTR | 25.0% |
| ! | TTTCTACGATGCAAAAAAAA+AGG | - | chr3_4:72960333-72960352 | Msa0520410:CDS | 25.0% |
| ! | TCAACAAATTCAGAAATGAA+AGG | + | chr3_4:72960374-72960393 | None:intergenic | 25.0% |
| !!! | TGTTGTGATTCTTATTTTGA+AGG | - | chr3_4:72960455-72960474 | Msa0520410:intron | 25.0% |
| !!! | ATTCTTATTTTGAAGGTTGA+AGG | - | chr3_4:72960462-72960481 | Msa0520410:intron | 25.0% |
| ! | CTATAGAAACAAAAGAGATT+GGG | + | chr3_4:72960504-72960523 | None:intergenic | 25.0% |
| ! | ACTATAGAAACAAAAGAGAT+TGG | + | chr3_4:72960505-72960524 | None:intergenic | 25.0% |
| !! | TTTTGACATGATTTAGATCA+AGG | - | chr3_4:72960688-72960707 | Msa0520410:intron | 25.0% |
| !!! | TTCTATTTCTATCTATGTAC+TGG | - | chr3_4:72960936-72960955 | Msa0520410:intron | 25.0% |
| !!! | TCTATTTCTATCTATGTACT+GGG | - | chr3_4:72960937-72960956 | Msa0520410:intron | 25.0% |
| ! | TTATTTATAGATCAGGTATG+TGG | + | chr3_4:72961119-72961138 | None:intergenic | 25.0% |
| !! | TTTATAGAGAAGTATGAACA+TGG | - | chr3_4:72961364-72961383 | Msa0520410:intron | 25.0% |
| !! | TTATAGAGAAGTATGAACAT+GGG | - | chr3_4:72961365-72961384 | Msa0520410:intron | 25.0% |
| !! | TTTTGAATTCTATGACCTAT+GGG | + | chr3_4:72961438-72961457 | None:intergenic | 25.0% |
| !! | TTTTTGAATTCTATGACCTA+TGG | + | chr3_4:72961439-72961458 | None:intergenic | 25.0% |
| ! | TAGGTCATAGAATTCAAAAA+AGG | - | chr3_4:72961439-72961458 | Msa0520410:five_prime_UTR | 25.0% |
| ! | AGGTCATAGAATTCAAAAAA+GGG | - | chr3_4:72961440-72961459 | Msa0520410:five_prime_UTR | 25.0% |
| ! | AGTTGCATTATTTCATTTAG+TGG | + | chr3_4:72961693-72961712 | None:intergenic | 25.0% |
| ! | AAATGAAATAATGCAACTCA+CGG | - | chr3_4:72961695-72961714 | Msa0520410:five_prime_UTR | 25.0% |
| !! | AAACCTTAGATTGATAACAT+TGG | + | chr3_4:72962003-72962022 | None:intergenic | 25.0% |
| ! | AACTTAAACCTACAATACAT+GGG | + | chr3_4:72962095-72962114 | None:intergenic | 25.0% |
| ! | TAACTTAAACCTACAATACA+TGG | + | chr3_4:72962096-72962115 | None:intergenic | 25.0% |
| !!! | GTAGCCAAGTTTTTTTTTTT+TGG | - | chr3_4:72962143-72962162 | Msa0520410:five_prime_UTR | 25.0% |
| ! | GATCCCAAAAAAAAAAAACT+TGG | + | chr3_4:72962150-72962169 | None:intergenic | 25.0% |
| ! | TACGGAAGTTTAACATAATA+AGG | + | chr3_4:72962245-72962264 | None:intergenic | 25.0% |
| ! | AGCAAAATTGGATATTCTAA+TGG | + | chr3_4:72962319-72962338 | None:intergenic | 25.0% |
| !! | ATTAGAATATCCAATTTTGC+TGG | - | chr3_4:72962318-72962337 | Msa0520410:intron | 25.0% |
| ! | GAAATGTTTGTAAAGTTAAG+TGG | - | chr3_4:72962356-72962375 | Msa0520410:five_prime_UTR | 25.0% |
| ! | ATCCTAAACAAATAGCAAAA+TGG | + | chr3_4:72962543-72962562 | None:intergenic | 25.0% |
| !!! | TTGTTTAGGATGATCAATTT+TGG | - | chr3_4:72962552-72962571 | Msa0520410:intron | 25.0% |
| !!! | TGTTTAGGATGATCAATTTT+GGG | - | chr3_4:72962553-72962572 | Msa0520410:intron | 25.0% |
| !!! | AGTTTAGTCTTATGTTACTT+TGG | - | chr3_4:72962594-72962613 | Msa0520410:intron | 25.0% |
| ! | TAACTTTGTTGAAGATTGTT+TGG | + | chr3_4:72962953-72962972 | None:intergenic | 25.0% |
| ! | AACAATCTTCAACAAAGTTA+AGG | - | chr3_4:72962953-72962972 | Msa0520410:intron | 25.0% |
| TTAGTCATAGTTATGAGATC+TGG | + | chr3_4:72959516-72959535 | None:intergenic | 30.0% | |
| !! | TGTACTAAGTGTTTTTGTTG+TGG | - | chr3_4:72959670-72959689 | Msa0520410:intron | 30.0% |
| !! | TGCTCTAAAACAACTATTGT+TGG | - | chr3_4:72959701-72959720 | Msa0520410:intron | 30.0% |
| GAGTTTGACATGAAAACAAA+AGG | + | chr3_4:72959892-72959911 | None:intergenic | 30.0% | |
| AAAGAAAGTTCACTACTTCA+TGG | - | chr3_4:72960083-72960102 | Msa0520410:CDS | 30.0% | |
| ATGGTGAAGATAGAAGATAA+AGG | - | chr3_4:72960102-72960121 | Msa0520410:CDS | 30.0% | |
| ! | AAGGAATTGAATGGTTAGTT+CGG | + | chr3_4:72960179-72960198 | None:intergenic | 30.0% |
| TGATGTGATTCTTATGTTGA+AGG | - | chr3_4:72960641-72960660 | Msa0520410:intron | 30.0% | |
| !! | CTATTTCTATCTATGTACTG+GGG | - | chr3_4:72960938-72960957 | Msa0520410:intron | 30.0% |
| TCTTCACAATGGTAAGATTA+AGG | - | chr3_4:72961053-72961072 | Msa0520410:five_prime_UTR | 30.0% | |
| TGTGACTTATTAGTAACATG+TGG | + | chr3_4:72961082-72961101 | None:intergenic | 30.0% | |
| !! | TCGTCTTTTGAGAGATTTAT+TGG | - | chr3_4:72961651-72961670 | Msa0520410:five_prime_UTR | 30.0% |
| TGTTCAGGTCATAATAATGT+AGG | + | chr3_4:72961803-72961822 | None:intergenic | 30.0% | |
| AAAGTGAAACCATCAAAGAA+TGG | - | chr3_4:72961887-72961906 | Msa0520410:intron | 30.0% | |
| TAGTATCAACCATTCTTTGA+TGG | + | chr3_4:72961899-72961918 | None:intergenic | 30.0% | |
| AAGCATGTGTCAAATGTTAT+AGG | - | chr3_4:72961928-72961947 | Msa0520410:intron | 30.0% | |
| AGCATGTGTCAAATGTTATA+GGG | - | chr3_4:72961929-72961948 | Msa0520410:intron | 30.0% | |
| AGACCAATGTTATCAATCTA+AGG | - | chr3_4:72961997-72962016 | Msa0520410:intron | 30.0% | |
| ATTTACTACCCATGTATTGT+AGG | - | chr3_4:72962084-72962103 | Msa0520410:intron | 30.0% | |
| ! | TTGTAGGTTTAAGTTAGAGA+TGG | - | chr3_4:72962100-72962119 | Msa0520410:intron | 30.0% |
| AGAATTGTTCCGAAAAATTC+AGG | - | chr3_4:72962440-72962459 | Msa0520410:intron | 30.0% | |
| ! | ATAACCTGACCTGAATTTTT+CGG | + | chr3_4:72962452-72962471 | None:intergenic | 30.0% |
| !!! | CACCATTTTGCTATTTGTTT+AGG | - | chr3_4:72962538-72962557 | Msa0520410:intron | 30.0% |
| GCATGTTTGAAAATATGACA+TGG | - | chr3_4:72962647-72962666 | Msa0520410:intron | 30.0% | |
| CTGTATGTTTCTTTAGATTC+AGG | - | chr3_4:72962738-72962757 | Msa0520410:intron | 30.0% | |
| ACCAAAAACAACATTGTTTG+GGG | + | chr3_4:72963132-72963151 | None:intergenic | 30.0% | |
| GACCAAAAACAACATTGTTT+GGG | + | chr3_4:72963133-72963152 | None:intergenic | 30.0% | |
| AGACCAAAAACAACATTGTT+TGG | + | chr3_4:72963134-72963153 | None:intergenic | 30.0% | |
| AGAACAACATAGATCTGACA+TGG | + | chr3_4:72960259-72960278 | None:intergenic | 35.0% | |
| TGTTCTTATCCATGTGTTCA+AGG | - | chr3_4:72960273-72960292 | Msa0520410:intron | 35.0% | |
| TATCTTCAACCTTGAACACA+TGG | + | chr3_4:72960285-72960304 | None:intergenic | 35.0% | |
| TGAACAAACACACTTTATCG+TGG | + | chr3_4:72960828-72960847 | None:intergenic | 35.0% | |
| ACAAAGAACAATGCTGAATC+TGG | - | chr3_4:72961015-72961034 | Msa0520410:intron | 35.0% | |
| TTGTGAAGAAGAATGATGGT+TGG | + | chr3_4:72961042-72961061 | None:intergenic | 35.0% | |
| ACCATCATTCTTCTTCACAA+TGG | - | chr3_4:72961042-72961061 | Msa0520410:five_prime_UTR | 35.0% | |
| ACCATTGTGAAGAAGAATGA+TGG | + | chr3_4:72961046-72961065 | None:intergenic | 35.0% | |
| ATGCACGGGGAATTATAAAT+TGG | + | chr3_4:72961255-72961274 | None:intergenic | 35.0% | |
| TATCAATCCTGAAATCCCAT+AGG | - | chr3_4:72961420-72961439 | Msa0520410:intron | 35.0% | |
| ACATACTTGGCTTATGATCT+TGG | + | chr3_4:72961494-72961513 | None:intergenic | 35.0% | |
| AAACAGGATTGCAACATACT+TGG | + | chr3_4:72961507-72961526 | None:intergenic | 35.0% | |
| GCAACAAATCAGAAATGTTC+AGG | + | chr3_4:72961818-72961837 | None:intergenic | 35.0% | |
| ATGTGTCAAATGTTATAGGG+CGG | - | chr3_4:72961932-72961951 | Msa0520410:intron | 35.0% | |
| CATGCATGTTGACAAGATAT+TGG | - | chr3_4:72962039-72962058 | Msa0520410:intron | 35.0% | |
| ! | GTTTAAGTTAGAGATGGAAG+TGG | - | chr3_4:72962106-72962125 | Msa0520410:intron | 35.0% |
| GAGATGGAAGTGGAATATAA+TGG | - | chr3_4:72962116-72962135 | Msa0520410:intron | 35.0% | |
| CTAACAAATGCACTGCATTT+AGG | - | chr3_4:72962279-72962298 | Msa0520410:intron | 35.0% | |
| !!! | ATTTTGGGTGTTGAAGATGT+TGG | - | chr3_4:72962568-72962587 | Msa0520410:intron | 35.0% |
| AATTAATCAATCGCCGTATG+TGG | - | chr3_4:72963057-72963076 | Msa0520410:intron | 35.0% | |
| !!! | ACCCCAAACAATGTTGTTTT+TGG | - | chr3_4:72963128-72963147 | Msa0520410:five_prime_UTR | 35.0% |
| AACTCACTTCAGCTTGAGTA+TGG | + | chr3_4:72959353-72959372 | None:intergenic | 40.0% | |
| TTCGTTGCAACTACTTCAAG+AGG | + | chr3_4:72959568-72959587 | None:intergenic | 40.0% | |
| ACGAACTGTGATATCAGATC+TGG | - | chr3_4:72959583-72959602 | Msa0520410:three_prime_UTR | 40.0% | |
| !!! | TACTGCTGCTTGCTCTTTTT+TGG | - | chr3_4:72960047-72960066 | Msa0520410:three_prime_UTR | 40.0% |
| TAATTGTGAGGTAGCATGCA+CGG | + | chr3_4:72961270-72961289 | None:intergenic | 40.0% | |
| AACATGGGATCTCTAATGCA+TGG | - | chr3_4:72961380-72961399 | Msa0520410:intron | 40.0% | |
| TCTATGACCTATGGGATTTC+AGG | + | chr3_4:72961430-72961449 | None:intergenic | 40.0% | |
| GTGACAGAGATGATGAAGAT+GGG | + | chr3_4:72961626-72961645 | None:intergenic | 40.0% | |
| TGTGACAGAGATGATGAAGA+TGG | + | chr3_4:72961627-72961646 | None:intergenic | 40.0% | |
| TGAAATAATGCAACTCACGG+AGG | - | chr3_4:72961698-72961717 | Msa0520410:five_prime_UTR | 40.0% | |
| AAATGTTATAGGGCGGCAAA+GGG | - | chr3_4:72961939-72961958 | Msa0520410:intron | 40.0% | |
| !! | ACATTGGTCTCATGCTTTTC+AGG | + | chr3_4:72961987-72962006 | None:intergenic | 40.0% |
| !! | TCGAGTTGATCCAGCAAAAT+TGG | + | chr3_4:72962331-72962350 | None:intergenic | 40.0% |
| TGTTCCGAAAAATTCAGGTC+AGG | - | chr3_4:72962445-72962464 | Msa0520410:intron | 40.0% | |
| ! | TTCAGAATCACTGGTAATGC+TGG | + | chr3_4:72962693-72962712 | None:intergenic | 40.0% |
| TACCAGTGATTCTGAACTTC+AGG | - | chr3_4:72962697-72962716 | Msa0520410:five_prime_UTR | 40.0% | |
| ACCAGTGATTCTGAACTTCA+GGG | - | chr3_4:72962698-72962717 | Msa0520410:five_prime_UTR | 40.0% | |
| TCTTCGCTAACACCAGAAAA+AGG | - | chr3_4:72962875-72962894 | Msa0520410:intron | 40.0% | |
| CTTCGCTAACACCAGAAAAA+GGG | - | chr3_4:72962876-72962895 | Msa0520410:intron | 40.0% | |
| ! | AGAATCTGCAACCCTTTTTC+TGG | + | chr3_4:72962890-72962909 | None:intergenic | 40.0% |
| AGAGTAAATAGGGCCACATA+CGG | + | chr3_4:72963073-72963092 | None:intergenic | 40.0% | |
| CTTGAGTATGGAAGAGAGAG+AGG | + | chr3_4:72959341-72959360 | None:intergenic | 45.0% | |
| !!! | CTGTTGATTTTCGTCACACG+CGG | + | chr3_4:72959783-72959802 | None:intergenic | 45.0% |
| AATTGTGAGGTAGCATGCAC+GGG | + | chr3_4:72961269-72961288 | None:intergenic | 45.0% | |
| GAGAATGATGAGTCTTCGAC+AGG | + | chr3_4:72961564-72961583 | None:intergenic | 45.0% | |
| ! | ATGATGAAGATGGGCTCACT+GGG | + | chr3_4:72961617-72961636 | None:intergenic | 45.0% |
| CAAATGTTATAGGGCGGCAA+AGG | - | chr3_4:72961938-72961957 | Msa0520410:intron | 45.0% | |
| !! | TGCTTTTCAGGACACAACAG+AGG | + | chr3_4:72961975-72961994 | None:intergenic | 45.0% |
| CGTGAGTGAAATGAGTTGCT+TGG | - | chr3_4:72962169-72962188 | Msa0520410:five_prime_UTR | 45.0% | |
| TACAACTGCAGACCTTCACA+GGG | - | chr3_4:72962195-72962214 | Msa0520410:five_prime_UTR | 45.0% | |
| CAAATGCACTGCATTTAGGC+TGG | - | chr3_4:72962283-72962302 | Msa0520410:intron | 45.0% | |
| AAGTTAAGTGGCAGCCAACT+TGG | - | chr3_4:72962368-72962387 | Msa0520410:five_prime_UTR | 45.0% | |
| AGTTAAGTGGCAGCCAACTT+GGG | - | chr3_4:72962369-72962388 | Msa0520410:five_prime_UTR | 45.0% | |
| ACAGAACAACTGTCCCAAGT+TGG | + | chr3_4:72962385-72962404 | None:intergenic | 45.0% | |
| TGGGACAGTTGTTCTGTTCA+AGG | - | chr3_4:72962388-72962407 | Msa0520410:five_prime_UTR | 45.0% | |
| GACAGTTGTTCTGTTCAAGG+AGG | - | chr3_4:72962391-72962410 | Msa0520410:five_prime_UTR | 45.0% | |
| GTTCTGTTCAAGGAGGATGA+AGG | - | chr3_4:72962398-72962417 | Msa0520410:intron | 45.0% | |
| ACCCTGAAGTTCAGAATCAC+TGG | + | chr3_4:72962702-72962721 | None:intergenic | 45.0% | |
| TCACAGAAAGCAGACAGTGT+TGG | + | chr3_4:72962836-72962855 | None:intergenic | 45.0% | |
| !! | ATAAAATAATAAGAAATATA+AGG | + | chr3_4:72960558-72960577 | None:intergenic | 5.0% |
| !! | AAAGAATTATTAAAATTTAT+AGG | + | chr3_4:72961182-72961201 | None:intergenic | 5.0% |
| GTATGGAAGAGAGAGAGGCT+TGG | + | chr3_4:72959336-72959355 | None:intergenic | 50.0% | |
| CGCGTGTGACGAAAATCAAC+AGG | - | chr3_4:72959781-72959800 | Msa0520410:three_prime_UTR | 50.0% | |
| ATTGTGAGGTAGCATGCACG+GGG | + | chr3_4:72961268-72961287 | None:intergenic | 50.0% | |
| ! | GATGATGAAGATGGGCTCAC+TGG | + | chr3_4:72961618-72961637 | None:intergenic | 50.0% |
| CTACAACTGCAGACCTTCAC+AGG | - | chr3_4:72962194-72962213 | Msa0520410:five_prime_UTR | 50.0% | |
| CGTCACACGCGGTCATTGAA+TGG | + | chr3_4:72959772-72959791 | None:intergenic | 55.0% | |
| CCTCAGTCACGACCCTGTGA+AGG | + | chr3_4:72962210-72962229 | None:intergenic | 60.0% | |
| CCTTCACAGGGTCGTGACTG+AGG | - | chr3_4:72962207-72962226 | Msa0520410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72959321 | 72963166 | 72959321 | ID=Msa0520410;Name=Msa0520410 |
| chr3_4 | mRNA | 72959321 | 72963166 | 72959321 | ID=Msa0520410-mRNA-1;Parent=Msa0520410;Name=Msa0520410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1178|0.91|0.92|1|0.25|0.23|13|656|97 |
| chr3_4 | exon | 72959321 | 72959654 | 72959321 | ID=Msa0520410-mRNA-1:exon:20304;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72959748 | 72960186 | 72959748 | ID=Msa0520410-mRNA-1:exon:20303;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72960318 | 72960381 | 72960318 | ID=Msa0520410-mRNA-1:exon:20302;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72960469 | 72960633 | 72960469 | ID=Msa0520410-mRNA-1:exon:20301;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72960768 | 72960930 | 72960768 | ID=Msa0520410-mRNA-1:exon:20300;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72961026 | 72961116 | 72961026 | ID=Msa0520410-mRNA-1:exon:20299;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72961424 | 72961854 | 72961424 | ID=Msa0520410-mRNA-1:exon:20298;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72961949 | 72962010 | 72961949 | ID=Msa0520410-mRNA-1:exon:20297;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72962133 | 72962222 | 72962133 | ID=Msa0520410-mRNA-1:exon:20296;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72962319 | 72962410 | 72962319 | ID=Msa0520410-mRNA-1:exon:20295;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72962685 | 72962748 | 72962685 | ID=Msa0520410-mRNA-1:exon:20294;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72962883 | 72962970 | 72962883 | ID=Msa0520410-mRNA-1:exon:20293;Parent=Msa0520410-mRNA-1 |
| chr3_4 | exon | 72963122 | 72963166 | 72963122 | ID=Msa0520410-mRNA-1:exon:20292;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72963122 | 72963166 | 72963122 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72962883 | 72962970 | 72962883 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72962685 | 72962748 | 72962685 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72962319 | 72962410 | 72962319 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72962133 | 72962222 | 72962133 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72961949 | 72962010 | 72961949 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72961424 | 72961854 | 72961424 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72961026 | 72961116 | 72961026 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72960768 | 72960930 | 72960768 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | five_prime_UTR | 72960582 | 72960633 | 72960582 | ID=Msa0520410-mRNA-1:five_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | CDS | 72960469 | 72960581 | 72960469 | ID=Msa0520410-mRNA-1:cds;Parent=Msa0520410-mRNA-1 |
| chr3_4 | CDS | 72960318 | 72960381 | 72960318 | ID=Msa0520410-mRNA-1:cds;Parent=Msa0520410-mRNA-1 |
| chr3_4 | CDS | 72960070 | 72960186 | 72960070 | ID=Msa0520410-mRNA-1:cds;Parent=Msa0520410-mRNA-1 |
| chr3_4 | three_prime_UTR | 72959748 | 72960069 | 72959748 | ID=Msa0520410-mRNA-1:three_prime_utr;Parent=Msa0520410-mRNA-1 |
| chr3_4 | three_prime_UTR | 72959321 | 72959654 | 72959321 | ID=Msa0520410-mRNA-1:three_prime_utr;Parent=Msa0520410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
