Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157630 | XP_003624478.1 | 98.660 | 373 | 2 | 1 | 1 | 370 | 1 | 373 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157630 | sp|Q9FMU6|MPCP3_ARATH | 78.904 | 365 | 69 | 2 | 7 | 363 | 2 | 366 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157630 | Q2HUK6 | 98.660 | 373 | 2 | 1 | 1 | 370 | 1 | 373 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1030760 | Msa1157630 | 0.921550 | 3.099514e-88 | -8.615850e-47 |
| Msa1046140 | Msa1157630 | 0.818247 | 2.165978e-52 | -8.615850e-47 |
| Msa1119970 | Msa1157630 | 0.931739 | 2.418920e-94 | -8.615850e-47 |
| Msa1157630 | Msa1185870 | 0.810967 | 8.858098e-51 | -8.615850e-47 |
| Msa1157630 | Msa1334040 | 0.822181 | 2.717525e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157630 | MtrunA17_Chr7g0251981 | 98.660 | 373 | 2 | 1 | 1 | 370 | 1 | 373 | 0.0 | 741 |
| Msa1157630 | MtrunA17_Chr8g0385891 | 77.299 | 348 | 74 | 2 | 6 | 353 | 5 | 347 | 0.0 | 545 |
| Msa1157630 | MtrunA17_Chr6g0461981 | 71.633 | 349 | 89 | 2 | 11 | 358 | 3 | 342 | 0.0 | 517 |
| Msa1157630 | MtrunA17_Chr5g0407451 | 49.655 | 290 | 142 | 1 | 71 | 360 | 13 | 298 | 1.86e-101 | 302 |
| Msa1157630 | MtrunA17_Chr4g0051841 | 43.253 | 289 | 162 | 1 | 74 | 360 | 24 | 312 | 1.13e-87 | 267 |
| Msa1157630 | MtrunA17_Chr6g0463351 | 29.008 | 262 | 150 | 9 | 89 | 331 | 77 | 321 | 2.91e-16 | 79.3 |
| Msa1157630 | MtrunA17_Chr3g0137941 | 26.339 | 224 | 156 | 5 | 44 | 264 | 86 | 303 | 8.53e-16 | 78.2 |
| Msa1157630 | MtrunA17_Chr2g0296061 | 24.686 | 239 | 155 | 4 | 79 | 295 | 15 | 250 | 1.52e-13 | 70.9 |
| Msa1157630 | MtrunA17_Chr2g0296061 | 26.263 | 198 | 119 | 7 | 75 | 249 | 125 | 318 | 4.30e-11 | 63.5 |
| Msa1157630 | MtrunA17_Chr8g0372531 | 25.714 | 210 | 121 | 7 | 68 | 253 | 105 | 303 | 3.10e-13 | 69.7 |
| Msa1157630 | MtrunA17_Chr8g0347451 | 27.863 | 262 | 166 | 9 | 73 | 315 | 43 | 300 | 3.30e-13 | 70.1 |
| Msa1157630 | MtrunA17_Chr8g0347451 | 24.737 | 190 | 119 | 5 | 86 | 251 | 160 | 349 | 3.73e-12 | 67.0 |
| Msa1157630 | MtrunA17_Chr1g0149111 | 27.322 | 183 | 129 | 3 | 82 | 264 | 142 | 320 | 3.43e-13 | 70.5 |
| Msa1157630 | MtrunA17_Chr5g0396801 | 25.789 | 190 | 119 | 5 | 86 | 253 | 147 | 336 | 3.48e-13 | 70.1 |
| Msa1157630 | MtrunA17_Chr5g0396801 | 27.984 | 243 | 149 | 9 | 71 | 295 | 28 | 262 | 2.85e-12 | 67.4 |
| Msa1157630 | MtrunA17_Chr7g0252401 | 30.493 | 223 | 142 | 6 | 75 | 293 | 204 | 417 | 7.01e-13 | 69.7 |
| Msa1157630 | MtrunA17_Chr4g0067231 | 23.750 | 240 | 158 | 4 | 79 | 295 | 14 | 251 | 7.20e-13 | 68.9 |
| Msa1157630 | MtrunA17_Chr4g0067231 | 24.390 | 205 | 126 | 7 | 75 | 255 | 126 | 325 | 3.78e-11 | 63.5 |
| Msa1157630 | MtrunA17_Chr8g0385571 | 30.734 | 218 | 136 | 7 | 80 | 293 | 229 | 435 | 1.42e-12 | 68.9 |
| Msa1157630 | MtrunA17_Chr3g0131501 | 30.000 | 220 | 135 | 8 | 80 | 293 | 207 | 413 | 2.74e-12 | 67.8 |
| Msa1157630 | MtrunA17_Chr7g0269701 | 28.421 | 190 | 117 | 6 | 89 | 264 | 133 | 317 | 3.23e-12 | 67.0 |
| Msa1157630 | MtrunA17_Chr4g0063561 | 25.824 | 182 | 124 | 4 | 82 | 259 | 126 | 300 | 1.56e-11 | 65.1 |
| Msa1157630 | MtrunA17_Chr5g0431531 | 25.874 | 286 | 184 | 7 | 80 | 350 | 41 | 313 | 6.13e-11 | 63.2 |
| Msa1157630 | MtrunA17_Chr1g0195101 | 27.746 | 173 | 105 | 6 | 93 | 251 | 33 | 199 | 6.71e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157630 | AT5G14040.1 | 78.904 | 365 | 69 | 2 | 7 | 363 | 2 | 366 | 0.0 | 574 |
| Msa1157630 | AT3G48850.1 | 68.820 | 356 | 108 | 1 | 7 | 362 | 2 | 354 | 0.0 | 510 |
| Msa1157630 | AT2G17270.1 | 50.993 | 302 | 143 | 3 | 68 | 368 | 11 | 308 | 3.47e-107 | 317 |
| Msa1157630 | AT5G66380.1 | 26.636 | 214 | 122 | 8 | 68 | 258 | 102 | 303 | 5.76e-14 | 72.4 |
| Msa1157630 | AT5G51050.1 | 29.474 | 285 | 168 | 12 | 80 | 348 | 225 | 492 | 6.18e-14 | 73.6 |
| Msa1157630 | AT1G25380.1 | 27.895 | 190 | 121 | 6 | 89 | 266 | 131 | 316 | 2.86e-13 | 70.9 |
| Msa1157630 | AT1G25380.2 | 27.895 | 190 | 121 | 6 | 89 | 266 | 131 | 316 | 2.86e-13 | 70.9 |
| Msa1157630 | AT3G53940.1 | 28.729 | 181 | 114 | 6 | 80 | 251 | 182 | 356 | 8.30e-13 | 69.3 |
| Msa1157630 | AT1G79900.1 | 25.253 | 198 | 144 | 3 | 67 | 264 | 98 | 291 | 1.31e-12 | 68.2 |
| Msa1157630 | AT4G01100.2 | 25.794 | 252 | 157 | 8 | 71 | 295 | 32 | 280 | 1.42e-12 | 68.6 |
| Msa1157630 | AT4G01100.1 | 26.778 | 239 | 157 | 8 | 71 | 295 | 32 | 266 | 1.94e-12 | 68.2 |
| Msa1157630 | AT5G48970.1 | 25.373 | 201 | 120 | 6 | 75 | 249 | 132 | 328 | 1.31e-11 | 65.5 |
| Msa1157630 | AT5G48970.1 | 23.431 | 239 | 159 | 4 | 80 | 295 | 23 | 260 | 2.86e-11 | 64.7 |
| Msa1157630 | AT5G48970.2 | 25.373 | 201 | 120 | 6 | 75 | 249 | 61 | 257 | 1.32e-11 | 64.7 |
| Msa1157630 | AT4G01100.3 | 25.571 | 219 | 149 | 6 | 88 | 295 | 1 | 216 | 3.67e-11 | 63.9 |
| Msa1157630 | AT4G32400.1 | 28.261 | 184 | 117 | 4 | 72 | 249 | 205 | 379 | 4.19e-11 | 64.3 |
| Msa1157630 | AT1G07030.1 | 27.374 | 179 | 120 | 4 | 74 | 249 | 36 | 207 | 8.33e-11 | 63.2 |
| Msa1157630 | AT2G47490.1 | 27.174 | 184 | 122 | 5 | 91 | 265 | 129 | 309 | 8.38e-11 | 62.8 |
Find 145 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCGACTTGACAAATTT+TGG | 0.064803 | 7_4:+46678523 | None:intergenic |
| GCACAGGGTGCTTGCAAATT+TGG | 0.141897 | 7_4:-46678742 | Msa1157630:CDS |
| AGCACTCCTCTGTTTATTTA+TGG | 0.158551 | 7_4:+46677002 | None:intergenic |
| CCTTTGCTGCACTCATTCTT+TGG | 0.207799 | 7_4:+46677578 | None:intergenic |
| GTAGATCAAGGTCTTGTATT+TGG | 0.240422 | 7_4:+46678663 | None:intergenic |
| AATAACAAATGCAAGAAAAT+TGG | 0.248025 | 7_4:+46676918 | None:intergenic |
| GTGAATAACCGGTAGGGTTT+TGG | 0.271570 | 7_4:+46680148 | None:intergenic |
| CACAGGGTGCTTGCAAATTT+GGG | 0.272981 | 7_4:-46678741 | Msa1157630:CDS |
| ACAAGGGATTAGTGCCTCTA+TGG | 0.295974 | 7_4:-46678369 | Msa1157630:CDS |
| ATCACCAACTGTTGCTCCTT+TGG | 0.305945 | 7_4:+46677454 | None:intergenic |
| GTCAAGTCGGAAGGAGCTTT+GGG | 0.313946 | 7_4:-46678514 | Msa1157630:CDS |
| CTGCACTCATTCTTTGGTTG+TGG | 0.319170 | 7_4:+46677584 | None:intergenic |
| CCTTCTCCTAAGGAACCTTT+TGG | 0.320200 | 7_4:-46680044 | Msa1157630:CDS |
| ACCAAGACCTCTTGCAAAAC+CGG | 0.326720 | 7_4:+46678555 | None:intergenic |
| TGCACTCATTCTTTGGTTGT+GGG | 0.330467 | 7_4:+46677585 | None:intergenic |
| TTCTATGCTGCTTGTACTGC+TGG | 0.334701 | 7_4:-46679996 | Msa1157630:CDS |
| GGCGCGGCGGCGGAAGGAGC+GGG | 0.336833 | 7_4:+46680107 | None:intergenic |
| CCGCCTTCACTCCGTGGAAC+TGG | 0.348054 | 7_4:-46680086 | Msa1157630:CDS |
| CGTTGCACTTTGCCCATTTG+AGG | 0.350501 | 7_4:-46678605 | Msa1157630:CDS |
| TTGTATTTGGCTGCATACTC+AGG | 0.350724 | 7_4:+46678676 | None:intergenic |
| CTATAAATTGTCGTCATTGT+TGG | 0.356180 | 7_4:+46677061 | None:intergenic |
| TGTCAAGTCGGAAGGAGCTT+TGG | 0.366299 | 7_4:-46678515 | Msa1157630:CDS |
| TTTGCTGGTGGATACATTGC+TGG | 0.369619 | 7_4:-46677536 | Msa1157630:CDS |
| CGGCGCGGCGGCGGAAGGAG+CGG | 0.370068 | 7_4:+46680106 | None:intergenic |
| GTTCAAGGAGCAGGGAGTTA+AGG | 0.373432 | 7_4:-46678806 | Msa1157630:CDS |
| TTCAAGGAGCAGGGAGTTAA+GGG | 0.378873 | 7_4:-46678805 | Msa1157630:CDS |
| TCCTTTGCAATCTCTGCAAC+GGG | 0.381681 | 7_4:+46677093 | None:intergenic |
| ATAGTTTGCTTAAGAAACTT+AGG | 0.383933 | 7_4:-46677042 | Msa1157630:three_prime_UTR |
| ACTTAGGAAACCAGCGAATA+GGG | 0.387534 | 7_4:-46677026 | Msa1157630:three_prime_UTR |
| CCTCTCCGTATTGTTATGAT+TGG | 0.392836 | 7_4:-46677287 | Msa1157630:CDS |
| GCAATCTCTGCAACGGGAGC+AGG | 0.392961 | 7_4:+46677099 | None:intergenic |
| GTTATGATTGGAACACTTAC+CGG | 0.392999 | 7_4:-46677275 | Msa1157630:CDS |
| GGCGGCGGAAGGAGCGGGAC+CGG | 0.404628 | 7_4:+46680112 | None:intergenic |
| ATTCCGGATGAAAATTAATC+AGG | 0.416921 | 7_4:+46676701 | None:intergenic |
| ATGCAGGCTGTTGCGAAGTT+TGG | 0.417122 | 7_4:-46677338 | Msa1157630:intron |
| CTGACGATCTGGTGAATAAC+CGG | 0.417433 | 7_4:+46680137 | None:intergenic |
| AAGTACAAGAGCATCTCATC+AGG | 0.418546 | 7_4:-46678841 | Msa1157630:CDS |
| GATGCTTTCAAAGTCTTTGT+GGG | 0.421116 | 7_4:-46677233 | Msa1157630:CDS |
| TTGCAAGAGGTCTTGGTGAT+GGG | 0.421210 | 7_4:-46678549 | Msa1157630:CDS |
| TGGTGCAAAAGCAAAAGAAT+TGG | 0.421691 | 7_4:-46680309 | Msa1157630:five_prime_UTR |
| CGGACTTTAACAGCCTCAAA+TGG | 0.421890 | 7_4:+46678592 | None:intergenic |
| AACTTAGGAAACCAGCGAAT+AGG | 0.424333 | 7_4:-46677027 | Msa1157630:three_prime_UTR |
| TATTTATGGTCCCTATTCGC+TGG | 0.424921 | 7_4:+46677016 | None:intergenic |
| TGATGCTTTCAAAGTCTTTG+TGG | 0.429250 | 7_4:-46677234 | Msa1157630:CDS |
| ATTCACCAGATCGTCAGTTC+CGG | 0.433147 | 7_4:-46680131 | Msa1157630:CDS |
| AAGACCTTGATCTACCTTGC+TGG | 0.435876 | 7_4:-46678655 | Msa1157630:CDS |
| AAGTACTATTCTGATATTGC+TGG | 0.438339 | 7_4:-46678700 | Msa1157630:CDS |
| GAGATGCTCTTGTACTTGGC+AGG | 0.444922 | 7_4:+46678847 | None:intergenic |
| CTTGAGTTCTCAAGCATGGT+TGG | 0.445500 | 7_4:-46676972 | Msa1157630:three_prime_UTR |
| TTTGCAAGAGGTCTTGGTGA+TGG | 0.446061 | 7_4:-46678550 | Msa1157630:CDS |
| TCACTCCGTGGAACTGGATC+CGG | 0.455713 | 7_4:-46680080 | Msa1157630:CDS |
| AAGAGCATCTCATCAGGGTT+TGG | 0.458213 | 7_4:-46678835 | Msa1157630:CDS |
| GAGTGAAGGCGGCGCGGCGG+CGG | 0.460339 | 7_4:+46680097 | None:intergenic |
| CTCATTCTTTGGTTGTGGGA+TGG | 0.461022 | 7_4:+46677589 | None:intergenic |
| GAAGGCGGCGCGGCGGCGGA+AGG | 0.466553 | 7_4:+46680101 | None:intergenic |
| TGATGAGATGCTCTTGTACT+TGG | 0.466999 | 7_4:+46678843 | None:intergenic |
| ATCTTGCCAAAAGGTTCCTT+AGG | 0.467490 | 7_4:+46680038 | None:intergenic |
| GGATGGGTCCCTACATTACT+TGG | 0.467879 | 7_4:-46678772 | Msa1157630:CDS |
| CACTACACGCCTCTGTCAAA+AGG | 0.475676 | 7_4:-46676807 | Msa1157630:three_prime_UTR |
| GGAGCAGCACCACCGGTTGT+TGG | 0.480665 | 7_4:+46677120 | None:intergenic |
| TTCCTTTGCAATCTCTGCAA+CGG | 0.481654 | 7_4:+46677092 | None:intergenic |
| ATATTTGTTAGGCCAACAAC+CGG | 0.488505 | 7_4:-46677132 | Msa1157630:intron |
| CGGGACCGGAACTGACGATC+TGG | 0.489410 | 7_4:+46680126 | None:intergenic |
| CAAGGGATTAGTGCCTCTAT+GGG | 0.492057 | 7_4:-46678368 | Msa1157630:CDS |
| GGTGCAAAAGCAAAAGAATT+GGG | 0.494159 | 7_4:-46680308 | Msa1157630:five_prime_UTR |
| TTATGATTGCAGGCTGTACA+AGG | 0.497538 | 7_4:-46678386 | Msa1157630:intron |
| CTCAACAATGGTCTCAAAAG+AGG | 0.497947 | 7_4:+46677628 | None:intergenic |
| ATTCATGATTCCTTCTCCTA+AGG | 0.502454 | 7_4:-46680054 | Msa1157630:CDS |
| ATATATTCCCCACTGGGCTC+CGG | 0.504355 | 7_4:+46677256 | None:intergenic |
| CCAAAGAATGAGTGCAGCAA+AGG | 0.506478 | 7_4:-46677578 | Msa1157630:CDS |
| TTGCTGAAAACTTCGTAGCT+AGG | 0.507807 | 7_4:-46676856 | Msa1157630:three_prime_UTR |
| GTTGCGAAGTTTGGTGTGGT+TGG | 0.508050 | 7_4:-46677329 | Msa1157630:CDS |
| ATTACTTGGTTACAGTGCAC+AGG | 0.515158 | 7_4:-46678758 | Msa1157630:CDS |
| ATGATTCCTTCATTTCTCTA+CGG | 0.518236 | 7_4:-46680179 | Msa1157630:CDS |
| TTGTTGTCTATGCATAAGCA+TGG | 0.519073 | 7_4:-46676770 | Msa1157630:three_prime_UTR |
| TTCTTCCACCAAAACCCTAC+CGG | 0.523169 | 7_4:-46680156 | Msa1157630:CDS |
| AAAGAGACAAGGTTATCAGC+AGG | 0.524035 | 7_4:+46677488 | None:intergenic |
| ATGAAGGAATCATGTTTCTA+CGG | 0.525899 | 7_4:+46680189 | None:intergenic |
| TACATCTCGATCTTGCCAAA+AGG | 0.527813 | 7_4:+46680029 | None:intergenic |
| CTTAGTCAAGTGTAATATGC+AGG | 0.531917 | 7_4:-46679925 | Msa1157630:intron |
| GCACTGTAACCAAGTAATGT+AGG | 0.533624 | 7_4:+46678763 | None:intergenic |
| CCAAAAGGTTCCTTAGGAGA+AGG | 0.534266 | 7_4:+46680044 | None:intergenic |
| GAAGAACCGTAGAGAAATGA+AGG | 0.537076 | 7_4:+46680173 | None:intergenic |
| TGTATTTGGCTGCATACTCA+GGG | 0.537672 | 7_4:+46678677 | None:intergenic |
| GTACAAGCAGCATAGAAAGC+AGG | 0.538163 | 7_4:+46680002 | None:intergenic |
| AAGCATCATATATTCCCCAC+TGG | 0.538260 | 7_4:+46677249 | None:intergenic |
| GGACTTTAACAGCCTCAAAT+GGG | 0.539740 | 7_4:+46678593 | None:intergenic |
| AACACTTACCGGAGCCCAGT+GGG | 0.541109 | 7_4:-46677264 | Msa1157630:CDS |
| TATGCTGCTTGTACTGCTGG+TGG | 0.545880 | 7_4:-46679993 | Msa1157630:CDS |
| CAAAGAATGAGTGCAGCAAA+GGG | 0.546393 | 7_4:-46677577 | Msa1157630:CDS |
| CACTGTAACCAAGTAATGTA+GGG | 0.552514 | 7_4:+46678764 | None:intergenic |
| GGGAGCAGGAGCAGCACCAC+CGG | 0.555232 | 7_4:+46677113 | None:intergenic |
| CCAAAATTTGTCAAGTCGGA+AGG | 0.555895 | 7_4:-46678523 | Msa1157630:CDS |
| CCAAGACCTCTTGCAAAACC+GGG | 0.555939 | 7_4:+46678556 | None:intergenic |
| AATTGTAGAAACAAAGTGAT+TGG | 0.558917 | 7_4:-46680329 | None:intergenic |
| GTTGCTTGAGTTCTCAAGCA+TGG | 0.562493 | 7_4:-46676976 | Msa1157630:three_prime_UTR |
| TGCTGGTTCAGCATCTGCTG+AGG | 0.562706 | 7_4:-46678638 | Msa1157630:CDS |
| AGAAGGAATCATGAATCTAC+CGG | 0.563282 | 7_4:+46680061 | None:intergenic |
| TGCAGCAAAGGGCTGCAACT+TGG | 0.564769 | 7_4:-46677566 | Msa1157630:CDS |
| GTCCGTGTTCAAACTCAGCC+CGG | 0.566951 | 7_4:-46678574 | Msa1157630:CDS |
| CTTATAGATTTGCTCAACAA+TGG | 0.571646 | 7_4:+46677616 | None:intergenic |
| AGCAAAATGAAATGCGAGAG+AGG | 0.572437 | 7_4:+46680271 | None:intergenic |
| GTGTTCCAATCATAACAATA+CGG | 0.581864 | 7_4:+46677282 | None:intergenic |
| GATCCAGTTCCACGGAGTGA+AGG | 0.581952 | 7_4:+46680083 | None:intergenic |
| TGAACCAGCAAGGTAGATCA+AGG | 0.583686 | 7_4:+46678651 | None:intergenic |
| TGTTGTCTATGCATAAGCAT+GGG | 0.584430 | 7_4:-46676769 | Msa1157630:three_prime_UTR |
| ATGCTTTCAAAGTCTTTGTG+GGG | 0.587996 | 7_4:-46677232 | Msa1157630:CDS |
| AGCATCATATATTCCCCACT+GGG | 0.588188 | 7_4:+46677250 | None:intergenic |
| CGTTGTTCAGAAAAGAGACA+AGG | 0.592020 | 7_4:+46677477 | None:intergenic |
| GGAATCTGCCTTCCCCATAG+AGG | 0.592926 | 7_4:+46678355 | None:intergenic |
| CGATCTGGTGAATAACCGGT+AGG | 0.594124 | 7_4:+46680141 | None:intergenic |
| AAATGAAATGCGAGAGAGGA+GGG | 0.594287 | 7_4:+46680275 | None:intergenic |
| AATACGGAGAGGGAGACCTC+TGG | 0.599896 | 7_4:+46677298 | None:intergenic |
| GAACGAATTCTCTCTCGCAA+TGG | 0.601158 | 7_4:-46680234 | Msa1157630:exon |
| GTGGTTGGTCTCTTCACCAG+AGG | 0.608443 | 7_4:-46677314 | Msa1157630:CDS |
| GGCTGTTGCGAAGTTTGGTG+TGG | 0.612493 | 7_4:-46677333 | Msa1157630:CDS |
| GATTAGTGCCTCTATGGGGA+AGG | 0.612930 | 7_4:-46678363 | Msa1157630:CDS |
| CCAGTTCCACGGAGTGAAGG+CGG | 0.613356 | 7_4:+46680086 | None:intergenic |
| AACGCCAAAGGAGCAACAGT+TGG | 0.613664 | 7_4:-46677458 | Msa1157630:CDS |
| GCTGGTGGAATTCTTAGCTG+TGG | 0.615544 | 7_4:-46679978 | Msa1157630:CDS |
| ACGGAGTGAAGGCGGCGCGG+CGG | 0.615971 | 7_4:+46680094 | None:intergenic |
| GCTCCCAAAATTTGTCAAGT+CGG | 0.621493 | 7_4:-46678527 | Msa1157630:CDS |
| AGATGCTCTTGTACTTGGCA+GGG | 0.621873 | 7_4:+46678848 | None:intergenic |
| CAATCATAACAATACGGAGA+GGG | 0.625979 | 7_4:+46677288 | None:intergenic |
| TCAAGTCGGAAGGAGCTTTG+GGG | 0.630516 | 7_4:-46678513 | Msa1157630:intron |
| TTACACTTGACTAAGTCAAG+AGG | 0.631255 | 7_4:+46679933 | None:intergenic |
| TTACTTGGTTACAGTGCACA+GGG | 0.631543 | 7_4:-46678757 | Msa1157630:CDS |
| TCCCGTTGCAGAGATTGCAA+AGG | 0.642017 | 7_4:-46677094 | Msa1157630:CDS |
| CAGCAGATGCTGAACCAGCA+AGG | 0.642348 | 7_4:+46678641 | None:intergenic |
| ATCTACCGGATCCAGTTCCA+CGG | 0.647055 | 7_4:+46680075 | None:intergenic |
| GATCTGGTGAATAACCGGTA+GGG | 0.649771 | 7_4:+46680142 | None:intergenic |
| TATGATTGCAGGCTGTACAA+GGG | 0.654041 | 7_4:-46678385 | Msa1157630:intron |
| TCCACGGAGTGAAGGCGGCG+CGG | 0.654298 | 7_4:+46680091 | None:intergenic |
| TTTGTTAGGCCAACAACCGG+TGG | 0.658305 | 7_4:-46677129 | Msa1157630:intron |
| TGTCTATGCATAAGCATGGG+TGG | 0.661496 | 7_4:-46676766 | Msa1157630:three_prime_UTR |
| AACCGGGCTGAGTTTGAACA+CGG | 0.669826 | 7_4:+46678572 | None:intergenic |
| AGTACAAGAGCATCTCATCA+GGG | 0.671144 | 7_4:-46678840 | Msa1157630:CDS |
| AAAATGAAATGCGAGAGAGG+AGG | 0.671379 | 7_4:+46680274 | None:intergenic |
| AAATAAACAGAGGAGTGCTG+AGG | 0.681529 | 7_4:-46676998 | Msa1157630:three_prime_UTR |
| GTAATGTAGGGACCCATCCG+CGG | 0.692836 | 7_4:+46678776 | None:intergenic |
| GAACACTTACCGGAGCCCAG+TGG | 0.694776 | 7_4:-46677265 | Msa1157630:CDS |
| TAGGGACCATAAATAAACAG+AGG | 0.701316 | 7_4:-46677008 | Msa1157630:three_prime_UTR |
| AAGGGATTAGTGCCTCTATG+GGG | 0.721830 | 7_4:-46678367 | Msa1157630:CDS |
| ACACTTACCGGAGCCCAGTG+GGG | 0.735878 | 7_4:-46677263 | Msa1157630:CDS |
| CCAATCATAACAATACGGAG+AGG | 0.738908 | 7_4:+46677287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTTATATTTGTT+AGG | - | chr7_4:46679764-46679783 | Msa1157630:intron | 10.0% |
| !!! | GCATTTGTTATTTTAAATTT+TGG | - | chr7_4:46680000-46680019 | Msa1157630:CDS | 15.0% |
| !!! | TTGTTATTTTAAATTTTGGT+AGG | - | chr7_4:46680004-46680023 | Msa1157630:CDS | 15.0% |
| !! | ACTAATAAAATCGAAATTCT+AGG | + | chr7_4:46677260-46677279 | None:intergenic | 20.0% |
| !! | TGTGATGAAATATTCATATT+TGG | - | chr7_4:46677403-46677422 | Msa1157630:intron | 20.0% |
| !! | TGTTGAAGATTATTCATATT+TGG | - | chr7_4:46677671-46677690 | Msa1157630:intron | 20.0% |
| !! | TTTGTAATAAATAGCATTTG+TGG | + | chr7_4:46677844-46677863 | None:intergenic | 20.0% |
| !! | AATTACTAGTATTGTTAAAC+TGG | - | chr7_4:46677943-46677962 | Msa1157630:intron | 20.0% |
| !! | ACTAAATATATTATGATTGC+AGG | - | chr7_4:46678511-46678530 | Msa1157630:intron | 20.0% |
| !! | GCTGTTAAAATTTATCATTT+AGG | - | chr7_4:46678815-46678834 | Msa1157630:CDS | 20.0% |
| !!! | TTTTAGAAAATTCATTCAAG+AGG | - | chr7_4:46678864-46678883 | Msa1157630:intron | 20.0% |
| !!! | TGATATATTTGTTCTAAAGT+GGG | - | chr7_4:46679725-46679744 | Msa1157630:intron | 20.0% |
| !! | AATAACAAATGCAAGAAAAT+TGG | + | chr7_4:46679992-46680011 | None:intergenic | 20.0% |
| !!! | TATTTTAAATTTTGGTAGGA+TGG | - | chr7_4:46680008-46680027 | Msa1157630:CDS | 20.0% |
| !!! | GCGATTTATGTTTGATTTTA+AGG | - | chr7_4:46677059-46677078 | Msa1157630:three_prime_UTR | 25.0% |
| ! | TGAATGTTGTTGAATTGTTA+TGG | - | chr7_4:46677134-46677153 | Msa1157630:intron | 25.0% |
| ! | TGATTGTGATACTGTTATAT+TGG | - | chr7_4:46677166-46677185 | Msa1157630:intron | 25.0% |
| ! | AAGAAAACTGCAAAATTCAA+TGG | + | chr7_4:46677313-46677332 | None:intergenic | 25.0% |
| !!! | ACTTTGATTTTTGTTGATCT+AGG | - | chr7_4:46677342-46677361 | Msa1157630:intron | 25.0% |
| !!! | CTTTGATTTTTGTTGATCTA+GGG | - | chr7_4:46677343-46677362 | Msa1157630:intron | 25.0% |
| !!! | TTTGATTTTTGTTGATCTAG+GGG | - | chr7_4:46677344-46677363 | Msa1157630:intron | 25.0% |
| !! | TGTGATTACATACAATTTTG+TGG | + | chr7_4:46677566-46677585 | None:intergenic | 25.0% |
| !! | TTATATCCTTGACAAACTTT+TGG | + | chr7_4:46678893-46678912 | None:intergenic | 25.0% |
| ! | CTAAAGACATTCAAAAGAAT+GGG | + | chr7_4:46678921-46678940 | None:intergenic | 25.0% |
| ! | TCTAAAGACATTCAAAAGAA+TGG | + | chr7_4:46678922-46678941 | None:intergenic | 25.0% |
| !!! | GTTTTACATGTCTTATTATC+AGG | + | chr7_4:46679219-46679238 | None:intergenic | 25.0% |
| !!! | GTGATATATTTGTTCTAAAG+TGG | - | chr7_4:46679724-46679743 | Msa1157630:intron | 25.0% |
| !!! | ATAGTTTGCTTAAGAAACTT+AGG | - | chr7_4:46679865-46679884 | Msa1157630:intron | 25.0% |
| !! | ATGATATAATTTTGCGTGTT+AGG | - | chr7_4:46680075-46680094 | Msa1157630:CDS | 25.0% |
| !! | TGATATAATTTTGCGTGTTA+GGG | - | chr7_4:46680076-46680095 | Msa1157630:CDS | 25.0% |
| !! | TTACCTGATTAATTTTCATC+CGG | - | chr7_4:46680203-46680222 | Msa1157630:CDS | 25.0% |
| !! | TTTTACCAACAAAAACATTC+CGG | + | chr7_4:46680225-46680244 | None:intergenic | 25.0% |
| ! | ATGAAGGAATCATGTTTCTA+CGG | + | chr7_4:46676721-46676740 | None:intergenic | 30.0% |
| ATGATTCCTTCATTTCTCTA+CGG | - | chr7_4:46676728-46676747 | Msa1157630:three_prime_UTR | 30.0% | |
| !! | GGTGTTTATTTGATTTGTGA+TGG | - | chr7_4:46677080-46677099 | Msa1157630:exon | 30.0% |
| ! | TAGATCTGAGAAATGCTTTT+AGG | - | chr7_4:46677105-46677124 | Msa1157630:CDS | 30.0% |
| !! | CTTGTTGTATGTTAAGTTGA+AGG | - | chr7_4:46677216-46677235 | Msa1157630:intron | 30.0% |
| !! | AGTCTGTTGATATTTTGAGT+AGG | - | chr7_4:46677373-46677392 | Msa1157630:intron | 30.0% |
| !! | TTGTGGTTTTTAATTACCAC+AGG | + | chr7_4:46677549-46677568 | None:intergenic | 30.0% |
| CAAAATCTCAACAGAGTAAT+AGG | + | chr7_4:46677624-46677643 | None:intergenic | 30.0% | |
| ! | AGATTCAGCAATTTAAGACT+AGG | + | chr7_4:46677882-46677901 | None:intergenic | 30.0% |
| TAGGATTGGAATTGTTTAGT+TGG | - | chr7_4:46677981-46678000 | Msa1157630:intron | 30.0% | |
| AAGTACTATTCTGATATTGC+TGG | - | chr7_4:46678207-46678226 | Msa1157630:intron | 30.0% | |
| CTTCAAATGTAGAACTTACA+TGG | + | chr7_4:46678576-46678595 | None:intergenic | 30.0% | |
| CAAAAAAATGATGTGCAAAC+TGG | + | chr7_4:46678691-46678710 | None:intergenic | 30.0% | |
| ACAGCAAAAATATCAACAGA+CGG | + | chr7_4:46678800-46678819 | None:intergenic | 30.0% | |
| TAAAACTCATAAGTAGAAGC+AGG | + | chr7_4:46678849-46678868 | None:intergenic | 30.0% | |
| TGAGAAATGATGAAACTCAT+TGG | - | chr7_4:46679091-46679110 | Msa1157630:intron | 30.0% | |
| CTCATTGGTATGAATATTGA+TGG | - | chr7_4:46679106-46679125 | Msa1157630:intron | 30.0% | |
| GTCATTATGTGTTACGAATA+TGG | - | chr7_4:46679176-46679195 | Msa1157630:intron | 30.0% | |
| ! | CTTATAGATTTGCTCAACAA+TGG | + | chr7_4:46679294-46679313 | None:intergenic | 30.0% |
| GTGTTCCAATCATAACAATA+CGG | + | chr7_4:46679628-46679647 | None:intergenic | 30.0% | |
| CTATAAATTGTCGTCATTGT+TGG | + | chr7_4:46679849-46679868 | None:intergenic | 30.0% | |
| AGAAAAATTGATCTCAATCG+AGG | + | chr7_4:46680177-46680196 | None:intergenic | 30.0% | |
| ATTCCGGATGAAAATTAATC+AGG | + | chr7_4:46680209-46680228 | None:intergenic | 30.0% | |
| TGGTGCAAAAGCAAAAGAAT+TGG | - | chr7_4:46676598-46676617 | Msa1157630:three_prime_UTR | 35.0% | |
| GGTGCAAAAGCAAAAGAATT+GGG | - | chr7_4:46676599-46676618 | Msa1157630:three_prime_UTR | 35.0% | |
| AGAAGGAATCATGAATCTAC+CGG | + | chr7_4:46676849-46676868 | None:intergenic | 35.0% | |
| ATTCATGATTCCTTCTCCTA+AGG | - | chr7_4:46676853-46676872 | Msa1157630:three_prime_UTR | 35.0% | |
| TTACACTTGACTAAGTCAAG+AGG | + | chr7_4:46676977-46676996 | None:intergenic | 35.0% | |
| CTTAGTCAAGTGTAATATGC+AGG | - | chr7_4:46676982-46677001 | Msa1157630:three_prime_UTR | 35.0% | |
| ! | GCTTTTCTTCTTCGTTTTCT+TGG | - | chr7_4:46677009-46677028 | Msa1157630:three_prime_UTR | 35.0% |
| TAGGCAGCTAGAATAACAAA+AGG | + | chr7_4:46677605-46677624 | None:intergenic | 35.0% | |
| TGTTAAACTGGTTGTGTTGT+TGG | - | chr7_4:46677955-46677974 | Msa1157630:intron | 35.0% | |
| CACTGTAACCAAGTAATGTA+GGG | + | chr7_4:46678146-46678165 | None:intergenic | 35.0% | |
| ! | GTAGATCAAGGTCTTGTATT+TGG | + | chr7_4:46678247-46678266 | None:intergenic | 35.0% |
| !! | CTTCCGACTTGACAAATTTT+GGG | + | chr7_4:46678386-46678405 | None:intergenic | 35.0% |
| CTTGATCTATGCTAGGAATT+AGG | - | chr7_4:46678478-46678497 | Msa1157630:intron | 35.0% | |
| ATCTATGCTAGGAATTAGGA+TGG | - | chr7_4:46678482-46678501 | Msa1157630:intron | 35.0% | |
| TCTATGCTAGGAATTAGGAT+GGG | - | chr7_4:46678483-46678502 | Msa1157630:intron | 35.0% | |
| !! | AATTGACTTGAAGTCCAACA+AGG | + | chr7_4:46678762-46678781 | None:intergenic | 35.0% |
| TGTTACGAATATGGAACCTA+AGG | - | chr7_4:46679185-46679204 | Msa1157630:intron | 35.0% | |
| GTTACGAATATGGAACCTAA+GGG | - | chr7_4:46679186-46679205 | Msa1157630:intron | 35.0% | |
| TTACGAATATGGAACCTAAG+GGG | - | chr7_4:46679187-46679206 | Msa1157630:intron | 35.0% | |
| TGTTATCTACTGTTTGATGC+AGG | - | chr7_4:46679553-46679572 | Msa1157630:intron | 35.0% | |
| CAATCATAACAATACGGAGA+GGG | + | chr7_4:46679622-46679641 | None:intergenic | 35.0% | |
| GTTATGATTGGAACACTTAC+CGG | - | chr7_4:46679632-46679651 | Msa1157630:intron | 35.0% | |
| TGATGCTTTCAAAGTCTTTG+TGG | - | chr7_4:46679673-46679692 | Msa1157630:intron | 35.0% | |
| GATGCTTTCAAAGTCTTTGT+GGG | - | chr7_4:46679674-46679693 | Msa1157630:intron | 35.0% | |
| ATGCTTTCAAAGTCTTTGTG+GGG | - | chr7_4:46679675-46679694 | Msa1157630:intron | 35.0% | |
| ! | ATATTTGTTAGGCCAACAAC+CGG | - | chr7_4:46679775-46679794 | Msa1157630:intron | 35.0% |
| TAGGGACCATAAATAAACAG+AGG | - | chr7_4:46679899-46679918 | Msa1157630:intron | 35.0% | |
| AGCACTCCTCTGTTTATTTA+TGG | + | chr7_4:46679908-46679927 | None:intergenic | 35.0% | |
| ! | ATGTGTATTCCTTTTGACAG+AGG | + | chr7_4:46680112-46680131 | None:intergenic | 35.0% |
| TTGTTGTCTATGCATAAGCA+TGG | - | chr7_4:46680137-46680156 | Msa1157630:CDS | 35.0% | |
| TGTTGTCTATGCATAAGCAT+GGG | - | chr7_4:46680138-46680157 | Msa1157630:CDS | 35.0% | |
| !! | TTCATCCGGAATGTTTTTGT+TGG | - | chr7_4:46680217-46680236 | Msa1157630:CDS | 35.0% |
| AAATGAAATGCGAGAGAGGA+GGG | + | chr7_4:46676635-46676654 | None:intergenic | 40.0% | |
| AAAATGAAATGCGAGAGAGG+AGG | + | chr7_4:46676636-46676655 | None:intergenic | 40.0% | |
| AGCAAAATGAAATGCGAGAG+AGG | + | chr7_4:46676639-46676658 | None:intergenic | 40.0% | |
| GAAGAACCGTAGAGAAATGA+AGG | + | chr7_4:46676737-46676756 | None:intergenic | 40.0% | |
| ATCTTGCCAAAAGGTTCCTT+AGG | + | chr7_4:46676872-46676891 | None:intergenic | 40.0% | |
| TACATCTCGATCTTGCCAAA+AGG | + | chr7_4:46676881-46676900 | None:intergenic | 40.0% | |
| ! | CTTCTTCGTTTTCTTGGATC+TGG | - | chr7_4:46677015-46677034 | Msa1157630:three_prime_UTR | 40.0% |
| AAGTTGAAGGATCGCTTGAT+TGG | - | chr7_4:46677229-46677248 | Msa1157630:intron | 40.0% | |
| TAGTTATGAAACACAGCCAC+CGG | - | chr7_4:46677495-46677514 | Msa1157630:CDS | 40.0% | |
| !! | TGTGTTGTTGGTGTTAGGAT+TGG | - | chr7_4:46677967-46677986 | Msa1157630:intron | 40.0% |
| TGATGAGATGCTCTTGTACT+TGG | + | chr7_4:46678067-46678086 | None:intergenic | 40.0% | |
| !! | AAGTACAAGAGCATCTCATC+AGG | - | chr7_4:46678066-46678085 | Msa1157630:intron | 40.0% |
| !! | AGTACAAGAGCATCTCATCA+GGG | - | chr7_4:46678067-46678086 | Msa1157630:intron | 40.0% |
| !!! | AGGGTTTGGAGTTTTGTTCA+AGG | - | chr7_4:46678086-46678105 | Msa1157630:intron | 40.0% |
| GCACTGTAACCAAGTAATGT+AGG | + | chr7_4:46678147-46678166 | None:intergenic | 40.0% | |
| ATTACTTGGTTACAGTGCAC+AGG | - | chr7_4:46678149-46678168 | Msa1157630:intron | 40.0% | |
| TTACTTGGTTACAGTGCACA+GGG | - | chr7_4:46678150-46678169 | Msa1157630:intron | 40.0% | |
| TGTATTTGGCTGCATACTCA+GGG | + | chr7_4:46678233-46678252 | None:intergenic | 40.0% | |
| TTGTATTTGGCTGCATACTC+AGG | + | chr7_4:46678234-46678253 | None:intergenic | 40.0% | |
| GGACTTTAACAGCCTCAAAT+GGG | + | chr7_4:46678317-46678336 | None:intergenic | 40.0% | |
| GCTCCCAAAATTTGTCAAGT+CGG | - | chr7_4:46678380-46678399 | Msa1157630:intron | 40.0% | |
| !! | CCTTCCGACTTGACAAATTT+TGG | + | chr7_4:46678387-46678406 | None:intergenic | 40.0% |
| CCAAAATTTGTCAAGTCGGA+AGG | - | chr7_4:46678384-46678403 | Msa1157630:intron | 40.0% | |
| TGTTGCTCTTGATCTATGCT+AGG | - | chr7_4:46678471-46678490 | Msa1157630:intron | 40.0% | |
| TTATGATTGCAGGCTGTACA+AGG | - | chr7_4:46678521-46678540 | Msa1157630:CDS | 40.0% | |
| TATGATTGCAGGCTGTACAA+GGG | - | chr7_4:46678522-46678541 | Msa1157630:CDS | 40.0% | |
| ACTGCAATATCCTTGTTGAC+TGG | - | chr7_4:46678613-46678632 | Msa1157630:CDS | 40.0% | |
| ! | TTCAAAGTGTCCAGTCAACA+AGG | + | chr7_4:46678626-46678645 | None:intergenic | 40.0% |
| TCCAACAAGGTAGTGTAACA+TGG | + | chr7_4:46678749-46678768 | None:intergenic | 40.0% | |
| AGGAAGCCAAAAGTTTGTCA+AGG | - | chr7_4:46678884-46678903 | Msa1157630:intron | 40.0% | |
| TTATCAGGTTTCAACCCCTT+AGG | + | chr7_4:46679204-46679223 | None:intergenic | 40.0% | |
| CTCAACAATGGTCTCAAAAG+AGG | + | chr7_4:46679282-46679301 | None:intergenic | 40.0% | |
| TGCACTCATTCTTTGGTTGT+GGG | + | chr7_4:46679325-46679344 | None:intergenic | 40.0% | |
| CAAAGAATGAGTGCAGCAAA+GGG | - | chr7_4:46679330-46679349 | Msa1157630:intron | 40.0% | |
| AAAGAGACAAGGTTATCAGC+AGG | + | chr7_4:46679422-46679441 | None:intergenic | 40.0% | |
| CGTTGTTCAGAAAAGAGACA+AGG | + | chr7_4:46679433-46679452 | None:intergenic | 40.0% | |
| ! | TCTTTTCTGAACAACGCCAA+AGG | - | chr7_4:46679437-46679456 | Msa1157630:intron | 40.0% |
| CCAATCATAACAATACGGAG+AGG | + | chr7_4:46679623-46679642 | None:intergenic | 40.0% | |
| CCTCTCCGTATTGTTATGAT+TGG | - | chr7_4:46679620-46679639 | Msa1157630:intron | 40.0% | |
| AGCATCATATATTCCCCACT+GGG | + | chr7_4:46679660-46679679 | None:intergenic | 40.0% | |
| AAGCATCATATATTCCCCAC+TGG | + | chr7_4:46679661-46679680 | None:intergenic | 40.0% | |
| TTCCTTTGCAATCTCTGCAA+CGG | + | chr7_4:46679818-46679837 | None:intergenic | 40.0% | |
| AACTTAGGAAACCAGCGAAT+AGG | - | chr7_4:46679880-46679899 | Msa1157630:intron | 40.0% | |
| ACTTAGGAAACCAGCGAATA+GGG | - | chr7_4:46679881-46679900 | Msa1157630:intron | 40.0% | |
| TATTTATGGTCCCTATTCGC+TGG | + | chr7_4:46679894-46679913 | None:intergenic | 40.0% | |
| !! | AAATAAACAGAGGAGTGCTG+AGG | - | chr7_4:46679909-46679928 | Msa1157630:intron | 40.0% |
| TTGCTGAAAACTTCGTAGCT+AGG | - | chr7_4:46680051-46680070 | Msa1157630:CDS | 40.0% | |
| GAACGAATTCTCTCTCGCAA+TGG | - | chr7_4:46676673-46676692 | Msa1157630:three_prime_UTR | 45.0% | |
| TTCTTCCACCAAAACCCTAC+CGG | - | chr7_4:46676751-46676770 | Msa1157630:three_prime_UTR | 45.0% | |
| !! | AATAACCGGTAGGGTTTTGG+TGG | + | chr7_4:46676759-46676778 | None:intergenic | 45.0% |
| ! | GTGAATAACCGGTAGGGTTT+TGG | + | chr7_4:46676762-46676781 | None:intergenic | 45.0% |
| GATCTGGTGAATAACCGGTA+GGG | + | chr7_4:46676768-46676787 | None:intergenic | 45.0% | |
| CTGACGATCTGGTGAATAAC+CGG | + | chr7_4:46676773-46676792 | None:intergenic | 45.0% | |
| ATTCACCAGATCGTCAGTTC+CGG | - | chr7_4:46676776-46676795 | Msa1157630:three_prime_UTR | 45.0% | |
| CCAAAAGGTTCCTTAGGAGA+AGG | + | chr7_4:46676866-46676885 | None:intergenic | 45.0% | |
| ! | CCTTCTCCTAAGGAACCTTT+TGG | - | chr7_4:46676863-46676882 | Msa1157630:three_prime_UTR | 45.0% |
| GTACAAGCAGCATAGAAAGC+AGG | + | chr7_4:46676908-46676927 | None:intergenic | 45.0% | |
| ! | TTCTATGCTGCTTGTACTGC+TGG | - | chr7_4:46676911-46676930 | Msa1157630:three_prime_UTR | 45.0% |
| CATTGACACATCAACACCTG+TGG | - | chr7_4:46677530-46677549 | Msa1157630:CDS | 45.0% | |
| ! | CTGGTTGTGTTGTTGGTGTT+AGG | - | chr7_4:46677962-46677981 | Msa1157630:intron | 45.0% |
| AGATGCTCTTGTACTTGGCA+GGG | + | chr7_4:46678062-46678081 | None:intergenic | 45.0% | |
| !! | AAGAGCATCTCATCAGGGTT+TGG | - | chr7_4:46678072-46678091 | Msa1157630:intron | 45.0% |
| !!! | TGGAGTTTTGTTCAAGGAGC+AGG | - | chr7_4:46678092-46678111 | Msa1157630:intron | 45.0% |
| !!! | GGAGTTTTGTTCAAGGAGCA+GGG | - | chr7_4:46678093-46678112 | Msa1157630:intron | 45.0% |
| TTCAAGGAGCAGGGAGTTAA+GGG | - | chr7_4:46678102-46678121 | Msa1157630:intron | 45.0% | |
| ! | CACAGGGTGCTTGCAAATTT+GGG | - | chr7_4:46678166-46678185 | Msa1157630:intron | 45.0% |
| AAGACCTTGATCTACCTTGC+TGG | - | chr7_4:46678252-46678271 | Msa1157630:intron | 45.0% | |
| TGAACCAGCAAGGTAGATCA+AGG | + | chr7_4:46678259-46678278 | None:intergenic | 45.0% | |
| CGGACTTTAACAGCCTCAAA+TGG | + | chr7_4:46678318-46678337 | None:intergenic | 45.0% | |
| ACCAAGACCTCTTGCAAAAC+CGG | + | chr7_4:46678355-46678374 | None:intergenic | 45.0% | |
| TTTGCAAGAGGTCTTGGTGA+TGG | - | chr7_4:46678357-46678376 | Msa1157630:CDS | 45.0% | |
| ! | TTGCAAGAGGTCTTGGTGAT+GGG | - | chr7_4:46678358-46678377 | Msa1157630:CDS | 45.0% |
| ! | ACAAGGGATTAGTGCCTCTA+TGG | - | chr7_4:46678538-46678557 | Msa1157630:CDS | 45.0% |
| ! | CAAGGGATTAGTGCCTCTAT+GGG | - | chr7_4:46678539-46678558 | Msa1157630:CDS | 45.0% |
| ! | AAGGGATTAGTGCCTCTATG+GGG | - | chr7_4:46678540-46678559 | Msa1157630:CDS | 45.0% |
| GTTACTTCCGTTACCATCTG+AGG | - | chr7_4:46678661-46678680 | Msa1157630:CDS | 45.0% | |
| TGGAATGCCTCAGATGGTAA+CGG | + | chr7_4:46678671-46678690 | None:intergenic | 45.0% | |
| GCCATGTTACACTACCTTGT+TGG | - | chr7_4:46678745-46678764 | Msa1157630:CDS | 45.0% | |
| CTCATTCTTTGGTTGTGGGA+TGG | + | chr7_4:46679321-46679340 | None:intergenic | 45.0% | |
| CTGCACTCATTCTTTGGTTG+TGG | + | chr7_4:46679326-46679345 | None:intergenic | 45.0% | |
| CCTTTGCTGCACTCATTCTT+TGG | + | chr7_4:46679332-46679351 | None:intergenic | 45.0% | |
| CCAAAGAATGAGTGCAGCAA+AGG | - | chr7_4:46679329-46679348 | Msa1157630:intron | 45.0% | |
| !!! | CAACTTGGTGTCAGTTTTGC+TGG | - | chr7_4:46679356-46679375 | Msa1157630:intron | 45.0% |
| ! | TTTGCTGGTGGATACATTGC+TGG | - | chr7_4:46679371-46679390 | Msa1157630:intron | 45.0% |
| ATCACCAACTGTTGCTCCTT+TGG | + | chr7_4:46679456-46679475 | None:intergenic | 45.0% | |
| TCCTTTGCAATCTCTGCAAC+GGG | + | chr7_4:46679817-46679836 | None:intergenic | 45.0% | |
| GTTGCTTGAGTTCTCAAGCA+TGG | - | chr7_4:46679931-46679950 | Msa1157630:CDS | 45.0% | |
| CTTGAGTTCTCAAGCATGGT+TGG | - | chr7_4:46679935-46679954 | Msa1157630:CDS | 45.0% | |
| ! | CGAAGTTTTCAGCAACTGGA+AGG | + | chr7_4:46680046-46680065 | None:intergenic | 45.0% |
| ! | GCTACGAAGTTTTCAGCAAC+TGG | + | chr7_4:46680050-46680069 | None:intergenic | 45.0% |
| TGTCTATGCATAAGCATGGG+TGG | - | chr7_4:46680141-46680160 | Msa1157630:CDS | 45.0% | |
| !! | AATATAACAAAAAATTTATT+AGG | + | chr7_4:46679760-46679779 | None:intergenic | 5.0% |
| CGATCTGGTGAATAACCGGT+AGG | + | chr7_4:46676769-46676788 | None:intergenic | 50.0% | |
| ATCTACCGGATCCAGTTCCA+CGG | + | chr7_4:46676835-46676854 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTGTACTGCTGG+TGG | - | chr7_4:46676914-46676933 | Msa1157630:three_prime_UTR | 50.0% |
| GCTGGTGGAATTCTTAGCTG+TGG | - | chr7_4:46676929-46676948 | Msa1157630:three_prime_UTR | 50.0% | |
| TGACGACGCTATAACGCTAC+TGG | - | chr7_4:46677788-46677807 | Msa1157630:intron | 50.0% | |
| GAGATGCTCTTGTACTTGGC+AGG | + | chr7_4:46678063-46678082 | None:intergenic | 50.0% | |
| GTTCAAGGAGCAGGGAGTTA+AGG | - | chr7_4:46678101-46678120 | Msa1157630:intron | 50.0% | |
| !! | GGAGTTAAGGGCTTTTTCCG+CGG | - | chr7_4:46678114-46678133 | Msa1157630:intron | 50.0% |
| !! | TTAAGGGCTTTTTCCGCGGA+TGG | - | chr7_4:46678118-46678137 | Msa1157630:intron | 50.0% |
| !! | TAAGGGCTTTTTCCGCGGAT+GGG | - | chr7_4:46678119-46678138 | Msa1157630:intron | 50.0% |
| GGATGGGTCCCTACATTACT+TGG | - | chr7_4:46678135-46678154 | Msa1157630:intron | 50.0% | |
| ! | GCACAGGGTGCTTGCAAATT+TGG | - | chr7_4:46678165-46678184 | Msa1157630:intron | 50.0% |
| CGTTGCACTTTGCCCATTTG+AGG | - | chr7_4:46678302-46678321 | Msa1157630:intron | 50.0% | |
| AACCGGGCTGAGTTTGAACA+CGG | + | chr7_4:46678338-46678357 | None:intergenic | 50.0% | |
| CCAAGACCTCTTGCAAAACC+GGG | + | chr7_4:46678354-46678373 | None:intergenic | 50.0% | |
| TGTCAAGTCGGAAGGAGCTT+TGG | - | chr7_4:46678392-46678411 | Msa1157630:intron | 50.0% | |
| GTCAAGTCGGAAGGAGCTTT+GGG | - | chr7_4:46678393-46678412 | Msa1157630:intron | 50.0% | |
| TCAAGTCGGAAGGAGCTTTG+GGG | - | chr7_4:46678394-46678413 | Msa1157630:intron | 50.0% | |
| GATTAGTGCCTCTATGGGGA+AGG | - | chr7_4:46678544-46678563 | Msa1157630:CDS | 50.0% | |
| GCAAACTGGAATGCCTCAGA+TGG | + | chr7_4:46678677-46678696 | None:intergenic | 50.0% | |
| !!! | CTTGGTGTCAGTTTTGCTGG+TGG | - | chr7_4:46679359-46679378 | Msa1157630:intron | 50.0% |
| AACGCCAAAGGAGCAACAGT+TGG | - | chr7_4:46679449-46679468 | Msa1157630:intron | 50.0% | |
| ATGCAGGCTGTTGCGAAGTT+TGG | - | chr7_4:46679569-46679588 | Msa1157630:intron | 50.0% | |
| !! | GTTGCGAAGTTTGGTGTGGT+TGG | - | chr7_4:46679578-46679597 | Msa1157630:intron | 50.0% |
| ATATATTCCCCACTGGGCTC+CGG | + | chr7_4:46679654-46679673 | None:intergenic | 50.0% | |
| TTTGTTAGGCCAACAACCGG+TGG | - | chr7_4:46679778-46679797 | Msa1157630:intron | 50.0% | |
| TCCCGTTGCAGAGATTGCAA+AGG | - | chr7_4:46679813-46679832 | Msa1157630:intron | 50.0% | |
| CACTACACGCCTCTGTCAAA+AGG | - | chr7_4:46680100-46680119 | Msa1157630:CDS | 50.0% | |
| GATCCAGTTCCACGGAGTGA+AGG | + | chr7_4:46676827-46676846 | None:intergenic | 55.0% | |
| TCACTCCGTGGAACTGGATC+CGG | - | chr7_4:46676827-46676846 | Msa1157630:three_prime_UTR | 55.0% | |
| GTCAATGACCGTGTCGTGAC+CGG | + | chr7_4:46677517-46677536 | None:intergenic | 55.0% | |
| GTAATGTAGGGACCCATCCG+CGG | + | chr7_4:46678134-46678153 | None:intergenic | 55.0% | |
| CAGCAGATGCTGAACCAGCA+AGG | + | chr7_4:46678269-46678288 | None:intergenic | 55.0% | |
| !! | TGCTGGTTCAGCATCTGCTG+AGG | - | chr7_4:46678269-46678288 | Msa1157630:intron | 55.0% |
| GTCCGTGTTCAAACTCAGCC+CGG | - | chr7_4:46678333-46678352 | Msa1157630:intron | 55.0% | |
| ! | ACTCAGCCCGGTTTTGCAAG+AGG | - | chr7_4:46678345-46678364 | Msa1157630:intron | 55.0% |
| ! | CCCGGTTTTGCAAGAGGTCT+TGG | - | chr7_4:46678351-46678370 | Msa1157630:intron | 55.0% |
| GGAATCTGCCTTCCCCATAG+AGG | + | chr7_4:46678555-46678574 | None:intergenic | 55.0% | |
| TGCAGCAAAGGGCTGCAACT+TGG | - | chr7_4:46679341-46679360 | Msa1157630:intron | 55.0% | |
| ! | GGCTGTTGCGAAGTTTGGTG+TGG | - | chr7_4:46679574-46679593 | Msa1157630:intron | 55.0% |
| !! | GTGGTTGGTCTCTTCACCAG+AGG | - | chr7_4:46679593-46679612 | Msa1157630:intron | 55.0% |
| AATACGGAGAGGGAGACCTC+TGG | + | chr7_4:46679612-46679631 | None:intergenic | 55.0% | |
| AACACTTACCGGAGCCCAGT+GGG | - | chr7_4:46679643-46679662 | Msa1157630:intron | 55.0% | |
| CCAGTTCCACGGAGTGAAGG+CGG | + | chr7_4:46676824-46676843 | None:intergenic | 60.0% | |
| AATGACCGTGTCGTGACCGG+TGG | + | chr7_4:46677514-46677533 | None:intergenic | 60.0% | |
| GAACACTTACCGGAGCCCAG+TGG | - | chr7_4:46679642-46679661 | Msa1157630:intron | 60.0% | |
| ACACTTACCGGAGCCCAGTG+GGG | - | chr7_4:46679644-46679663 | Msa1157630:intron | 60.0% | |
| GCAATCTCTGCAACGGGAGC+AGG | + | chr7_4:46679811-46679830 | None:intergenic | 60.0% | |
| CGGGACCGGAACTGACGATC+TGG | + | chr7_4:46676784-46676803 | None:intergenic | 65.0% | |
| CCGCCTTCACTCCGTGGAAC+TGG | - | chr7_4:46676821-46676840 | Msa1157630:three_prime_UTR | 65.0% | |
| CACAGCCACCGGTCACGACA+CGG | - | chr7_4:46677506-46677525 | Msa1157630:CDS | 65.0% | |
| ! | GGAGCAGCACCACCGGTTGT+TGG | + | chr7_4:46679790-46679809 | None:intergenic | 65.0% |
| TCCACGGAGTGAAGGCGGCG+CGG | + | chr7_4:46676819-46676838 | None:intergenic | 70.0% | |
| GGGAGCAGGAGCAGCACCAC+CGG | + | chr7_4:46679797-46679816 | None:intergenic | 70.0% | |
| ACGGAGTGAAGGCGGCGCGG+CGG | + | chr7_4:46676816-46676835 | None:intergenic | 75.0% | |
| ! | GGCGGCGGAAGGAGCGGGAC+CGG | + | chr7_4:46676798-46676817 | None:intergenic | 80.0% |
| ! | GAGTGAAGGCGGCGCGGCGG+CGG | + | chr7_4:46676813-46676832 | None:intergenic | 80.0% |
| ! | GCCGCGCCGCCTTCACTCCG+TGG | - | chr7_4:46676815-46676834 | Msa1157630:three_prime_UTR | 80.0% |
| ! | GGCGCGGCGGCGGAAGGAGC+GGG | + | chr7_4:46676803-46676822 | None:intergenic | 85.0% |
| ! | CGGCGCGGCGGCGGAAGGAG+CGG | + | chr7_4:46676804-46676823 | None:intergenic | 85.0% |
| ! | GAAGGCGGCGCGGCGGCGGA+AGG | + | chr7_4:46676809-46676828 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 46676590 | 46680339 | 46676590 | ID=Msa1157630;Name=Msa1157630 |
| chr7_4 | mRNA | 46676590 | 46680339 | 46676590 | ID=Msa1157630-mRNA-1;Parent=Msa1157630;Name=Msa1157630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=102|1|1|1|1|1|6|499|370 |
| chr7_4 | exon | 46676590 | 46677143 | 46676590 | ID=Msa1157630-mRNA-1:exon:12254;Parent=Msa1157630-mRNA-1 |
| chr7_4 | exon | 46677230 | 46677354 | 46677230 | ID=Msa1157630-mRNA-1:exon:12253;Parent=Msa1157630-mRNA-1 |
| chr7_4 | exon | 46677454 | 46677668 | 46677454 | ID=Msa1157630-mRNA-1:exon:12252;Parent=Msa1157630-mRNA-1 |
| chr7_4 | exon | 46678353 | 46678396 | 46678353 | ID=Msa1157630-mRNA-1:exon:12251;Parent=Msa1157630-mRNA-1 |
| chr7_4 | exon | 46678514 | 46678875 | 46678514 | ID=Msa1157630-mRNA-1:exon:12250;Parent=Msa1157630-mRNA-1 |
| chr7_4 | exon | 46679926 | 46680339 | 46679926 | ID=Msa1157630-mRNA-1:exon:12249;Parent=Msa1157630-mRNA-1 |
| chr7_4 | five_prime_UTR | 46680238 | 46680339 | 46680238 | ID=Msa1157630-mRNA-1:five_prime_utr;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46679926 | 46680237 | 46679926 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46678514 | 46678875 | 46678514 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46678353 | 46678396 | 46678353 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46677454 | 46677668 | 46677454 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46677230 | 46677354 | 46677230 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | CDS | 46677089 | 46677143 | 46677089 | ID=Msa1157630-mRNA-1:cds;Parent=Msa1157630-mRNA-1 |
| chr7_4 | three_prime_UTR | 46676590 | 46677088 | 46676590 | ID=Msa1157630-mRNA-1:three_prime_utr;Parent=Msa1157630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
