AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163660 MtrunA17_Chr7g0260961 97.530 1012 18 2 1 1011 1 1006 0.0 2046
Msa1163660 MtrunA17_Chr1g0195401 39.300 486 264 11 542 1008 127 600 9.79e-112 358
Msa1163660 MtrunA17_Chr4g0026531 31.070 766 450 19 292 1010 72 806 1.16e-109 359
Msa1163660 MtrunA17_Chr1g0195411 47.895 190 97 2 786 974 4 192 1.12e-55 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163660 AT2G31320.1 68.209 1016 285 10 1 1011 1 983 0.0 1396
Msa1163660 AT4G02390.3 39.754 488 264 10 542 1010 89 565 3.76e-107 345
Msa1163660 AT4G02390.2 39.754 488 264 10 542 1010 158 634 1.17e-106 346
Msa1163660 AT4G02390.1 39.754 488 264 10 542 1010 160 636 1.25e-106 346
Msa1163660 AT5G22470.1 30.303 825 479 22 234 1010 29 805 1.08e-100 335
Msa1163660 AT3G14890.2 28.782 271 176 7 9 266 49 315 7.23e-12 70.1
Msa1163660 AT3G14890.1 31.658 199 122 5 9 197 49 243 9.29e-11 66.6

Find 275 sgRNAs with CRISPR-Local

Find 596 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCATCCACATATTATT+AGG 0.105501 7_4:+55009689 Msa1163660:CDS
GGGCATGAGGCCATCGAATT+TGG 0.181131 7_4:-55004330 None:intergenic
CGACTATTCTTTGAGAAAAC+TGG 0.242070 7_4:+55008993 Msa1163660:CDS
TAGCCAGTTGCTGGGGCTTC+AGG 0.259348 7_4:-55011424 None:intergenic
CAGTGGTTCAAATCTCAAAA+AGG 0.259566 7_4:+55007231 Msa1163660:intron
TGTTCTCTACTTCAGGTTCT+AGG 0.267279 7_4:+55011353 Msa1163660:intron
ATCTTGATCAATTCTATTAA+TGG 0.278783 7_4:-55009257 None:intergenic
AAACTAGAGGTGTGCTGTTT+TGG 0.279965 7_4:+55012732 Msa1163660:three_prime_UTR
GGTTGCAATGGGACTCTTGC+AGG 0.282998 7_4:-55004273 None:intergenic
GATTTGAGAGTTGCCATCTC+TGG 0.283526 7_4:+55007357 Msa1163660:CDS
CATTCATCCACATATTATTA+GGG 0.284288 7_4:+55009690 Msa1163660:CDS
TACTGATTATCTGTTTCCTT+TGG 0.287387 7_4:-55007131 None:intergenic
TATCTTCTTCAATTATTTGC+AGG 0.292751 7_4:-55008860 None:intergenic
CAAATAATTGAAGAAGATAA+TGG 0.297851 7_4:+55008864 Msa1163660:CDS
AATAGTCAGAGAGGACTATT+TGG 0.300812 7_4:+55007848 Msa1163660:CDS
ACTGATTATCTGTTTCCTTT+GGG 0.313751 7_4:-55007130 None:intergenic
CAGTTTCCCAAGTGGCATTT+CGG 0.317336 7_4:-55009405 None:intergenic
GCTTCTGGCCTACAGGATTC+TGG 0.317832 7_4:+55007987 Msa1163660:CDS
CTGGAAACCCTTGGGAGGCC+TGG 0.325393 7_4:+55009012 Msa1163660:CDS
ATTTGTCTACTGGTATTAAC+AGG 0.328166 7_4:+55008063 Msa1163660:CDS
ACTTTGCATATTCAGATTCC+AGG 0.332395 7_4:-55011996 None:intergenic
AGTGCTGTTCATGATGCTTC+TGG 0.337109 7_4:+55007972 Msa1163660:CDS
TTGCCAACTTTGTCTCTGTA+AGG 0.340991 7_4:-55010321 None:intergenic
AGCCCCAGCAACTGGCTATA+TGG 0.348497 7_4:+55011429 Msa1163660:CDS
ACTTTGCCCCTTGACTTTGA+TGG 0.354008 7_4:-55007952 None:intergenic
CACTTCCCTTCAGCACGCTT+CGG 0.357140 7_4:-55007101 None:intergenic
CCTCCTGAAGCCCCAGCAAC+TGG 0.366832 7_4:+55011421 Msa1163660:CDS
AGCCTGATGGTCAAGGTGCC+AGG 0.368170 7_4:+55005969 Msa1163660:CDS
GGACTATTTGGTTGACTGTA+TGG 0.370013 7_4:+55007860 Msa1163660:CDS
TGGTCAAGGTGCCAGGGGTT+TGG 0.371181 7_4:+55005976 Msa1163660:CDS
CTTCCAAAGGTGGCACTAAA+CGG 0.382184 7_4:+55006270 Msa1163660:CDS
GAGCCCAGAGATCTTTGATC+TGG 0.384627 7_4:-55006427 None:intergenic
TTCCAAAGGTGGCACTAAAC+GGG 0.385197 7_4:+55006271 Msa1163660:CDS
AAGTTTCACTGTTTGATGTT+TGG 0.385231 7_4:-55007329 None:intergenic
GGTGGTCAGTGGAGCACTTA+AGG 0.386722 7_4:+55007696 Msa1163660:CDS
TGTCGAAATCTGATGCAATC+AGG 0.391979 7_4:+55008961 Msa1163660:CDS
AAGGTGCCAGGGGTTTGGCT+TGG 0.393692 7_4:+55005981 Msa1163660:CDS
ATCAATGGAGTCGTCGTTGT+TGG 0.395881 7_4:-55010012 None:intergenic
ATTTATACAACGGAATCTTC+AGG 0.397858 7_4:-55007384 None:intergenic
AATATGTCTGATTTGTCTAC+TGG 0.398742 7_4:+55008053 Msa1163660:CDS
ATTGCTACGTGTTTCGCAAA+TGG 0.400336 7_4:+55008892 Msa1163660:CDS
TTTAAAATGAGTATGTTGTT+GGG 0.404812 7_4:-55013069 None:intergenic
ATTGTGTTAACATACCCTTT+TGG 0.408371 7_4:-55009442 None:intergenic
AGGCCCAGATCAAAGATCTC+TGG 0.408797 7_4:+55006423 Msa1163660:CDS
AGTGCTGATGGAATGATGTT+TGG 0.410252 7_4:+55006966 Msa1163660:intron
TTGCTACGTGTTTCGCAAAT+GGG 0.412307 7_4:+55008893 Msa1163660:CDS
AGATAATCAGTACCTTAAAA+AGG 0.412335 7_4:+55007142 Msa1163660:CDS
CCTAATAATATGTGGATGAA+TGG 0.413880 7_4:-55009689 None:intergenic
TCATGATGCTTCTGGCCTAC+AGG 0.417766 7_4:+55007980 Msa1163660:CDS
CTTAAAAGCATTAGACCAAC+AGG 0.419926 7_4:-55011689 None:intergenic
TAAACTGCAATTCTTGTTGA+AGG 0.420099 7_4:+55012680 Msa1163660:CDS
CGTTTAGTAGTATATACTAT+TGG 0.422462 7_4:+55004084 None:intergenic
TGAAATAGCCTCAAGATTAG+TGG 0.423165 7_4:+55009980 Msa1163660:CDS
CTTCTTATAATTATCATCAA+TGG 0.427067 7_4:-55010027 None:intergenic
TCCATCCTCATTTCTTGTGA+TGG 0.429629 7_4:-55012710 None:intergenic
AAATAGTCCTCTCTGACTAT+TGG 0.430169 7_4:-55007846 None:intergenic
CAATAGTATATACTACTAAA+CGG 0.430624 7_4:-55004083 None:intergenic
AAATTATCCACTTCAATTGA+TGG 0.434056 7_4:-55006034 None:intergenic
ATTTGAGAGTTGCCATCTCT+GGG 0.434588 7_4:+55007358 Msa1163660:CDS
CCCCTGGCACCTTGACCATC+AGG 0.441143 7_4:-55005971 None:intergenic
ATTTAAAATGAGTATGTTGT+TGG 0.442452 7_4:-55013070 None:intergenic
CGTTGTTCCCTGTGGGAAAC+CGG 0.449287 7_4:+55012032 Msa1163660:CDS
TATAATATAAGAAGCTTCAT+TGG 0.450993 7_4:-55013045 None:intergenic
GAGCAAAAGTAATATCCAAA+AGG 0.451321 7_4:+55009427 Msa1163660:CDS
ACCTGGGAGATTCTTCCCCT+TGG 0.453013 7_4:+55009058 Msa1163660:CDS
AACATCAAACAGTGAAACTT+TGG 0.454487 7_4:+55007332 Msa1163660:CDS
TCAACTTTGTACATATCAAA+TGG 0.457516 7_4:-55007900 None:intergenic
TCTCGTAACTTCTCGTGATA+AGG 0.457713 7_4:+55012813 Msa1163660:three_prime_UTR
AGCAGAGATGCGTGAAATGC+TGG 0.457723 7_4:+55006481 Msa1163660:CDS
TGCTCATTGATGCTAGCAAT+AGG 0.458324 7_4:+55009647 Msa1163660:CDS
TATTGTCATTTCAGTGCTGA+TGG 0.458515 7_4:+55006954 Msa1163660:intron
CAGAAATCTCATGCATGATC+TGG 0.458801 7_4:+55012921 Msa1163660:three_prime_UTR
CAAGATTGGAGGGAACAAAC+TGG 0.458917 7_4:+55008932 Msa1163660:CDS
GAGAGGGTGAGGAGAGAGAG+TGG 0.459076 7_4:+55004135 Msa1163660:five_prime_UTR
CACATCTCCCTTGACTTTAG+CGG 0.462505 7_4:-55006327 None:intergenic
TTGAGAAAACTGGAAACCCT+TGG 0.466084 7_4:+55009003 Msa1163660:CDS
TTCTAGGTTGACGAACTTTG+TGG 0.466090 7_4:+55011369 Msa1163660:CDS
TGGAAACCCTTGGGAGGCCT+GGG 0.466277 7_4:+55009013 Msa1163660:CDS
TCTCTCATCTTCTGATCAAT+CGG 0.467085 7_4:+55006072 Msa1163660:CDS
AAATAATTGAAGAAGATAAT+GGG 0.467660 7_4:+55008865 Msa1163660:CDS
TTCAGCACGCTTCGGTTCGC+AGG 0.467797 7_4:-55007093 None:intergenic
TTTGCGTACTCTGCTTTCCA+TGG 0.468447 7_4:-55004227 None:intergenic
ATTGAAGTGGATAATTTGCC+TGG 0.469195 7_4:+55006040 Msa1163660:CDS
AGTCCTTGCTCTCTATGTGA+TGG 0.470443 7_4:+55006996 Msa1163660:CDS
AAAGCAGAGTACGCAAAATC+AGG 0.472100 7_4:+55004233 Msa1163660:CDS
CGGAGCTTCTCGGTTGCAAT+GGG 0.474695 7_4:-55004284 None:intergenic
AGGCTATTTCAATATCTTGA+AGG 0.475473 7_4:-55009968 None:intergenic
GCACCATGCTAAGTGTCTCT+TGG 0.477110 7_4:+55006003 Msa1163660:CDS
AATAGTATATACTACTAAAC+GGG 0.478512 7_4:-55004082 None:intergenic
GAACTTAGAGTCGCTTCGTT+GGG 0.480032 7_4:+55004729 Msa1163660:CDS
AGGGAGATGTGTCTGCGAGC+AGG 0.481221 7_4:+55006339 Msa1163660:CDS
CTCAAGATCACGTGCCGCCC+CGG 0.481538 7_4:-55006390 None:intergenic
GGAGGAATGTACCGGTGCAC+TGG 0.484725 7_4:+55007035 Msa1163660:CDS
TTTGCCTGCAGTTTGGCAAA+GGG 0.487008 7_4:+55011606 Msa1163660:intron
GCCGCCTCTAAGTCGAGTGC+TGG 0.487078 7_4:+55004838 Msa1163660:CDS
TGCCAACTTTGTCTCTGTAA+GGG 0.487650 7_4:-55010320 None:intergenic
GCCAATGGTCAAGATTCAAC+AGG 0.488288 7_4:+55006506 Msa1163660:CDS
AGAACCATATAGCCAGTTGC+TGG 0.488876 7_4:-55011433 None:intergenic
TCTTTAATGTGGAAACATAC+AGG 0.491969 7_4:+55009282 Msa1163660:CDS
TGAGAAAACTGGAAACCCTT+GGG 0.492370 7_4:+55009004 Msa1163660:CDS
GCAATGCTGATCCATCAGTC+AGG 0.495787 7_4:+55009617 Msa1163660:CDS
TTTAGTGCCACCTTTGGAAG+AGG 0.498151 7_4:-55006267 None:intergenic
TCCTGTTGAATCTTGACCAT+TGG 0.499269 7_4:-55006507 None:intergenic
TGTGTCTGCGAGCAGGGTAG+CGG 0.500249 7_4:+55006346 Msa1163660:CDS
AAAGCATTCTACTAAAGGAC+TGG 0.500575 7_4:+55011960 Msa1163660:CDS
ACGGAGCTTCTCGGTTGCAA+TGG 0.502052 7_4:-55004285 None:intergenic
CAAAGATCTCTGGGCTCTGA+AGG 0.505056 7_4:+55006433 Msa1163660:CDS
TCCACATATTATTAGGGATG+AGG 0.505116 7_4:+55009696 Msa1163660:CDS
AGCAAAAGTAATATCCAAAA+GGG 0.506378 7_4:+55009428 Msa1163660:CDS
CAAGGAAAGCATTCTACTAA+AGG 0.506710 7_4:+55011955 Msa1163660:CDS
GTTTCGCAAACTTCACGTGC+TGG 0.507650 7_4:+55004886 Msa1163660:CDS
TCTTCACTGTCATGAGGAAG+TGG 0.510609 7_4:-55010068 None:intergenic
ACCCTCAAAACGCGAAGCCA+TGG 0.510955 7_4:+55004210 Msa1163660:CDS
CTATATAATAAGAGAGGGTG+AGG 0.512951 7_4:+55004124 Msa1163660:five_prime_UTR
AAGAAATAGTACAATTTCCA+AGG 0.514163 7_4:-55009075 None:intergenic
TCAGCAGGAGTCCTTGATGA+TGG 0.514978 7_4:-55007282 None:intergenic
CTTAATGTGAACACATTCAA+AGG 0.517305 7_4:-55013000 None:intergenic
CGAAGCGTGCTGAAGGGAAG+TGG 0.517630 7_4:+55007102 Msa1163660:CDS
AAGACTATTCAGAAGCAACC+TGG 0.518065 7_4:+55009041 Msa1163660:CDS
ATCAATTCTATTAATGGAGG+GGG 0.518129 7_4:-55009251 None:intergenic
GCCTGATGGTCAAGGTGCCA+GGG 0.518214 7_4:+55005970 Msa1163660:CDS
GAAATAGCCTCAAGATTAGT+GGG 0.518552 7_4:+55009981 Msa1163660:CDS
CGCAAAATTGATGCAGTAGG+TGG 0.519400 7_4:+55007539 Msa1163660:CDS
GCCAACTTTGTCTCTGTAAG+GGG 0.519558 7_4:-55010319 None:intergenic
TCTAGGTTGACGAACTTTGT+GGG 0.519658 7_4:+55011370 Msa1163660:CDS
GAGGTGCAATTCTCAGTCCT+TGG 0.520896 7_4:-55011402 None:intergenic
CATGAGGCCATCGAATTTGG+AGG 0.521208 7_4:-55004327 None:intergenic
GGGAGATGTGTCTGCGAGCA+GGG 0.522810 7_4:+55006340 Msa1163660:CDS
TTGGCAACAGAATGCTCCTA+TGG 0.523040 7_4:+55010337 Msa1163660:CDS
TGCAATTCTTGTTGAAGGTG+AGG 0.523731 7_4:+55012685 Msa1163660:CDS
ACAGAAGTTTGACTTTCAGC+AGG 0.526769 7_4:-55007297 None:intergenic
GTCGAAATCTGATGCAATCA+GGG 0.527691 7_4:+55008962 Msa1163660:CDS
GGCTATTTCAATATCTTGAA+GGG 0.528095 7_4:-55009967 None:intergenic
TTAAAATGAGTATGTTGTTG+GGG 0.528688 7_4:-55013068 None:intergenic
AAGTACATTGAGAGCGGTGG+TGG 0.529024 7_4:+55004772 Msa1163660:CDS
GTCAAAGGCCGCTAAAGTCA+AGG 0.529642 7_4:+55006319 Msa1163660:CDS
CGCATATCTACTAAGCCTGA+TGG 0.530256 7_4:+55005956 Msa1163660:CDS
TGATGACACCGGTTTCCCAC+AGG 0.530388 7_4:-55012040 None:intergenic
ACTGGGCAAGAAAATGCCCC+TGG 0.531158 7_4:+55011978 Msa1163660:CDS
AGCCCAGAGATCTTTGATCT+GGG 0.531514 7_4:-55006426 None:intergenic
ATAATATGTGGATGAATGGA+AGG 0.532035 7_4:-55009685 None:intergenic
AAGTGGATAATTTGCCTGGA+TGG 0.532909 7_4:+55006044 Msa1163660:CDS
TCCTCATCCCTAATAATATG+TGG 0.533242 7_4:-55009697 None:intergenic
GGCCCAGATCAAAGATCTCT+GGG 0.533562 7_4:+55006424 Msa1163660:CDS
TTTGAACCAGCATTCGACTT+CGG 0.536967 7_4:-55004808 None:intergenic
AGCTTGATTTGCGTGACCGT+TGG 0.538235 7_4:+55006534 Msa1163660:CDS
TGCGAACCGAAGCGTGCTGA+AGG 0.538550 7_4:+55007095 Msa1163660:CDS
GAACCATATAGCCAGTTGCT+GGG 0.542371 7_4:-55011432 None:intergenic
CTTCGGTTCGCAGGTAGAGT+AGG 0.542539 7_4:-55007084 None:intergenic
GATCAAGATGCTCTTTAATG+TGG 0.543678 7_4:+55009271 Msa1163660:CDS
ATGTACAAAGTTGAAATGAT+TGG 0.544000 7_4:+55007909 Msa1163660:CDS
AGAACTTAGAGTCGCTTCGT+TGG 0.544067 7_4:+55004728 Msa1163660:CDS
CTTCATGCAAAAGTGAAGAA+AGG 0.545004 7_4:+55007566 Msa1163660:CDS
GCAACCGAGAAGCTCCGTCT+TGG 0.548248 7_4:+55004290 Msa1163660:CDS
CGAGTGGGAAATGACAAGAT+TGG 0.548954 7_4:+55008918 Msa1163660:CDS
TCCAAAGGTGGCACTAAACG+GGG 0.550317 7_4:+55006272 Msa1163660:CDS
GGCACACCGAAGTCGAATGC+TGG 0.551393 7_4:+55004802 Msa1163660:CDS
TGATCAATTCTATTAATGGA+GGG 0.554166 7_4:-55009253 None:intergenic
TTGATCAATTCTATTAATGG+AGG 0.555295 7_4:-55009254 None:intergenic
TGAGCTCATACACATTTCCA+AGG 0.555953 7_4:-55011721 None:intergenic
CCAGTTGCTGGGGCTTCAGG+AGG 0.557381 7_4:-55011421 None:intergenic
ACTGAGCACTCTTGCTGACA+AGG 0.558738 7_4:-55011643 None:intergenic
GATCAATTCTATTAATGGAG+GGG 0.558979 7_4:-55009252 None:intergenic
GCTGAAAGTCAAACTTCTGT+AGG 0.559238 7_4:+55007300 Msa1163660:CDS
ATCTTCAGGCAACCCAGAGA+TGG 0.559690 7_4:-55007370 None:intergenic
ATTGATCTCAAATTCCATCA+TGG 0.560644 7_4:-55009378 None:intergenic
TTAATGTGAACACATTCAAA+GGG 0.560843 7_4:-55012999 None:intergenic
AGCAAGCTATCCCTGACTGA+TGG 0.560975 7_4:-55009628 None:intergenic
TACAGATACTAACTGCTTGG+TGG 0.561481 7_4:+55007678 Msa1163660:intron
AATATGTCCGAAATGCCACT+TGG 0.562170 7_4:+55009398 Msa1163660:CDS
TGCTACGTGTTTCGCAAATG+GGG 0.565409 7_4:+55008894 Msa1163660:CDS
TTTGTTCCCAGGCCTCCCAA+GGG 0.569125 7_4:-55009019 None:intergenic
AAAATACTATATAATAAGAG+AGG 0.570059 7_4:+55004118 Msa1163660:five_prime_UTR
CTTTGCATATTCAGATTCCA+GGG 0.571220 7_4:-55011995 None:intergenic
GTTTCGCAAATGGGGTCGAG+TGG 0.571251 7_4:+55008902 Msa1163660:CDS
GTGGGAAATGACAAGATTGG+AGG 0.572154 7_4:+55008921 Msa1163660:CDS
ACTTACAGATACTAACTGCT+TGG 0.575225 7_4:+55007675 Msa1163660:intron
ACTATCTCCATCAATTGAAG+TGG 0.576095 7_4:+55006027 Msa1163660:CDS
GAGAGCGGTGGTGGTAGTAG+TGG 0.577586 7_4:+55004781 Msa1163660:CDS
ATGGTCACCATCAAAGTCAA+GGG 0.578992 7_4:+55007945 Msa1163660:CDS
TATTGCCTCCGCCATCATCA+AGG 0.581370 7_4:+55007271 Msa1163660:CDS
ACTAACTGCTTGGTGGTCAG+TGG 0.581725 7_4:+55007685 Msa1163660:CDS
CATGGTCACCATCAAAGTCA+AGG 0.582667 7_4:+55007944 Msa1163660:CDS
ACCGGTGTCATCAAATGTCA+AGG 0.583088 7_4:+55012050 Msa1163660:CDS
TATAGACATACCGTATGTGT+GGG 0.584053 7_4:-55010131 None:intergenic
TCCAAGGGGAAGAATCTCCC+AGG 0.585297 7_4:-55009059 None:intergenic
TCCATCACAAGAAATGAGGA+TGG 0.585328 7_4:+55012709 Msa1163660:exon
GATGAGAGACTACTCCATCC+AGG 0.585331 7_4:-55006058 None:intergenic
AGAAATAGTACAATTTCCAA+GGG 0.587610 7_4:-55009074 None:intergenic
ATGGTGCCAAGCCAAACCCC+TGG 0.590698 7_4:-55005987 None:intergenic
AGACTATTCAGAAGCAACCT+GGG 0.591957 7_4:+55009042 Msa1163660:CDS
TCTGGCCACATACTAGAGGA+AGG 0.592429 7_4:+55008005 Msa1163660:CDS
GCTGATGGAATGATGTTTGG+AGG 0.592452 7_4:+55006969 Msa1163660:CDS
GTTATTCTGGAGGAATGTAC+CGG 0.592767 7_4:+55007027 Msa1163660:CDS
TCTACTAAGCCTGATGGTCA+AGG 0.596570 7_4:+55005962 Msa1163660:CDS
GTAGAATGCTTTCCTTGCGG+AGG 0.597209 7_4:-55011949 None:intergenic
GGAGTCCTTGATGATGGCGG+AGG 0.598242 7_4:-55007276 None:intergenic
TCAAAGGCCGCTAAAGTCAA+GGG 0.599366 7_4:+55006320 Msa1163660:CDS
GCCCCTTACAGAGACAAAGT+TGG 0.599749 7_4:+55010318 Msa1163660:CDS
AAACCATCACATAGAGAGCA+AGG 0.601001 7_4:-55006999 None:intergenic
AAGTTGAGATGCGGAAGGCA+AGG 0.601482 7_4:+55007722 Msa1163660:CDS
TGGGAAATGACAAGATTGGA+GGG 0.601675 7_4:+55008922 Msa1163660:CDS
AACAGAATGCTCCTATGGCA+TGG 0.602372 7_4:+55010342 Msa1163660:CDS
AGGTTCCATCACAAGAAATG+AGG 0.602431 7_4:+55012705 Msa1163660:CDS
AAGCATTCTACTAAAGGACT+GGG 0.602949 7_4:+55011961 Msa1163660:CDS
GATTGGTGAGGCTTCTAGCA+TGG 0.603400 7_4:+55007926 Msa1163660:CDS
TCTTCAATATGCACTCAGCA+TGG 0.604013 7_4:-55004580 None:intergenic
TTTCGCAAATGGGGTCGAGT+GGG 0.606651 7_4:+55008903 Msa1163660:CDS
ATATAGACATACCGTATGTG+TGG 0.608110 7_4:-55010132 None:intergenic
ACGTGATCTTGAGAATAGAC+TGG 0.608484 7_4:+55006400 Msa1163660:CDS
TCAATCGGCGGTCAGTGAGT+TGG 0.609881 7_4:+55006087 Msa1163660:CDS
CGGAAATGTATCCAGTGCAC+CGG 0.610371 7_4:-55007046 None:intergenic
GCCTTGACATTTGATGACAC+CGG 0.612387 7_4:-55012051 None:intergenic
CTCATCTTCTGATCAATCGG+CGG 0.612790 7_4:+55006075 Msa1163660:CDS
GTCAAATCCCACTAATCTTG+AGG 0.614798 7_4:-55009988 None:intergenic
AAGCTTAAAACTTACTTGAG+CGG 0.615129 7_4:-55012112 None:intergenic
AAACGCAAAATTGATGCAGT+AGG 0.615874 7_4:+55007536 Msa1163660:CDS
CTAAAATCTTCACTGTCATG+AGG 0.616080 7_4:-55010074 None:intergenic
GTTCAATCCTCCAAATTCGA+TGG 0.617034 7_4:+55004320 Msa1163660:CDS
TAATATGTGGATGAATGGAA+GGG 0.619233 7_4:-55009684 None:intergenic
CCTGATGGTCAAGGTGCCAG+GGG 0.620093 7_4:+55005971 Msa1163660:CDS
AAGTTATGATTACGGGCATG+AGG 0.620971 7_4:-55004343 None:intergenic
GTAGGAACATTTACTCCACT+CGG 0.621416 7_4:-55007066 None:intergenic
GAGCTCATACACATTTCCAA+GGG 0.623853 7_4:-55011720 None:intergenic
CGTGCTGGTTGCAAGCATTG+CGG 0.624498 7_4:+55004901 Msa1163660:CDS
GATGACACCGGTTTCCCACA+GGG 0.624877 7_4:-55012039 None:intergenic
AACCATATAGCCAGTTGCTG+GGG 0.625838 7_4:-55011431 None:intergenic
CAACAATCCTCTTCCAAAGG+TGG 0.628043 7_4:+55006260 Msa1163660:CDS
ATATGTCCGAAATGCCACTT+GGG 0.628831 7_4:+55009399 Msa1163660:CDS
AAATACTATATAATAAGAGA+GGG 0.629527 7_4:+55004119 Msa1163660:five_prime_UTR
CGTGAAATGCTGGATGCCAA+TGG 0.629579 7_4:+55006491 Msa1163660:CDS
GCGAACCGAAGCGTGCTGAA+GGG 0.632007 7_4:+55007096 Msa1163660:CDS
GTATGTGGCCAGAATCCTGT+AGG 0.633585 7_4:-55007995 None:intergenic
GGACTTGTACATAGTCCATG+TGG 0.634227 7_4:+55012787 Msa1163660:three_prime_UTR
GATGATGTCGTTGTTCCCTG+TGG 0.635856 7_4:+55012024 Msa1163660:CDS
TCCAGCACTCGACTTAGAGG+CGG 0.639433 7_4:-55004839 None:intergenic
GAACAGAACACACTTCAACT+CGG 0.639685 7_4:-55004163 None:intergenic
AGAGGGTGAGCAAAAGTCAA+AGG 0.641322 7_4:+55006304 Msa1163660:CDS
ACACAACAATCCTCTTCCAA+AGG 0.641848 7_4:+55006257 Msa1163660:CDS
CAATGCTGATCCATCAGTCA+GGG 0.642435 7_4:+55009618 Msa1163660:CDS
ACCAAAACTTACCATGCCAT+AGG 0.643460 7_4:-55010353 None:intergenic
TTTGGAAGAGGATTGTTGTG+TGG 0.645988 7_4:-55006255 None:intergenic
GACTTGTACATAGTCCATGT+GGG 0.646292 7_4:+55012788 Msa1163660:three_prime_UTR
CTGGCCACATACTAGAGGAA+GGG 0.647983 7_4:+55008006 Msa1163660:CDS
AGAAAGTACATTGAGAGCGG+TGG 0.649025 7_4:+55004769 Msa1163660:CDS
GGATTCTGGCCACATACTAG+AGG 0.653815 7_4:+55008001 Msa1163660:CDS
TTTGTGGGCATTCTTAACCA+AGG 0.654222 7_4:+55011385 Msa1163660:CDS
TGGTAGTGGTACAAATGTCG+AGG 0.657202 7_4:+55006214 Msa1163660:CDS
GAAAATACCAATAGTCAGAG+AGG 0.660210 7_4:+55007839 Msa1163660:CDS
TATATGGATAAACCTCCGCA+AGG 0.661215 7_4:+55011937 Msa1163660:CDS
CAAAGTTGAAATGATTGGTG+AGG 0.661472 7_4:+55007914 Msa1163660:CDS
TTAGTAGAATGCTTTCCTTG+CGG 0.662055 7_4:-55011952 None:intergenic
TTTGCATATTCAGATTCCAG+GGG 0.662095 7_4:-55011994 None:intergenic
TGGAATCTGAATATGCAAAG+TGG 0.664227 7_4:+55011998 Msa1163660:CDS
TGGTCACCATCAAAGTCAAG+GGG 0.670459 7_4:+55007946 Msa1163660:CDS
GAAAACTGGAAACCCTTGGG+AGG 0.670628 7_4:+55009007 Msa1163660:CDS
GCAGGAGTCCTTGATGATGG+CGG 0.670824 7_4:-55007279 None:intergenic
TAGACATACCGTATGTGTGG+GGG 0.672350 7_4:-55010129 None:intergenic
ATGATGTCGTTGTTCCCTGT+GGG 0.672597 7_4:+55012025 Msa1163660:CDS
GGATGAAGTTGAGATGCGGA+AGG 0.673329 7_4:+55007717 Msa1163660:CDS
GTTCCAAGAGACACTTAGCA+TGG 0.680316 7_4:-55006006 None:intergenic
ATAGACATACCGTATGTGTG+GGG 0.680316 7_4:-55010130 None:intergenic
CCAAAGGTGGCACTAAACGG+GGG 0.682751 7_4:+55006273 Msa1163660:CDS
ATTAGAAAGTACATTGAGAG+CGG 0.683297 7_4:+55004766 Msa1163660:CDS
TTAAGGATGAAGTTGAGATG+CGG 0.698261 7_4:+55007713 Msa1163660:CDS
TGATCTTGAGAATAGACTGG+AGG 0.707817 7_4:+55006403 Msa1163660:CDS
AGGGAAGTGGAAAATCCCAA+AGG 0.709398 7_4:+55007115 Msa1163660:CDS
GAAATAGTACAATTTCCAAG+GGG 0.718834 7_4:-55009073 None:intergenic
GATCTCAAATTCCATCATGG+CGG 0.725809 7_4:-55009375 None:intergenic
GATTGGAGGGAACAAACTGG+AGG 0.726096 7_4:+55008935 Msa1163660:CDS
AAATGCTGATGACTCCGGGG+CGG 0.729846 7_4:+55006376 Msa1163660:CDS
GAAATGAGGATGGAAACTAG+AGG 0.742902 7_4:+55012719 Msa1163660:exon
GCACTGGATACATTTCCGAG+TGG 0.746551 7_4:+55007051 Msa1163660:CDS
GAAGTTACGAGAATCCCACA+TGG 0.753311 7_4:-55012802 None:intergenic
GAAGTGGAGATATATCACAG+TGG 0.820451 7_4:-55010052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAGTATTTTGATTTT+AGG - chr7_4:55004112-55004131 None:intergenic 10.0%
!!! AAAAAGTACTAAAAATATAA+TGG - chr7_4:55004517-55004536 None:intergenic 10.0%
!! AAACAAATTGAAATTTAAAA+AGG - chr7_4:55004640-55004659 None:intergenic 10.0%
!!! GATTAAAGTTTTTTTTTTTT+TGG + chr7_4:55006630-55006649 Msa1163660:intron 10.0%
!!! TTTTTAAATTATTTGTTTGA+CGG + chr7_4:55009104-55009123 Msa1163660:intron 10.0%
!! TATTATTTAAACAATCTAAT+GGG - chr7_4:55012408-55012427 None:intergenic 10.0%
!! TTATTATTTAAACAATCTAA+TGG - chr7_4:55012409-55012428 None:intergenic 10.0%
!!! TTATATACAATTTTTCTTAT+TGG + chr7_4:55012541-55012560 Msa1163660:intron 10.0%
!! AAAATACTATATAATAAGAG+AGG + chr7_4:55004118-55004137 Msa1163660:five_prime_UTR 15.0%
!! AAATACTATATAATAAGAGA+GGG + chr7_4:55004119-55004138 Msa1163660:five_prime_UTR 15.0%
!!! AATTTTCATACAATTTTATC+TGG - chr7_4:55004613-55004632 None:intergenic 15.0%
!! AAATAAACATATTCTATTGT+TGG - chr7_4:55006748-55006767 None:intergenic 15.0%
!! ACAATAATAACTATCAAAAT+TGG - chr7_4:55006940-55006959 None:intergenic 15.0%
!! AAAAAACAGAATTTATACAA+CGG - chr7_4:55007397-55007416 None:intergenic 15.0%
!!! AATGAAGCATTAATTATTAA+AGG - chr7_4:55007426-55007445 None:intergenic 15.0%
!!! AAAATAACATTTTCCTAAAT+TGG - chr7_4:55007607-55007626 None:intergenic 15.0%
!!! ATTCTTAAATATTTTGATCA+TGG + chr7_4:55008626-55008645 Msa1163660:intron 15.0%
!! AAATAATTGAAGAAGATAAT+GGG + chr7_4:55008865-55008884 Msa1163660:CDS 15.0%
!! AAAATTGATCAAATTAACAA+TGG + chr7_4:55010666-55010685 Msa1163660:intron 15.0%
!! AATTAACAAATTTCTTTGTT+TGG + chr7_4:55010911-55010930 Msa1163660:intron 15.0%
!!! TTATGCTTATTAGTTTATAA+GGG + chr7_4:55011776-55011795 Msa1163660:intron 15.0%
!!! TGTATTTTTGTTTTATCATT+AGG + chr7_4:55012141-55012160 Msa1163660:intron 15.0%
!! AAACTTTAATAAAATGAAAG+TGG + chr7_4:55012176-55012195 Msa1163660:intron 15.0%
!! AACTTTAATAAAATGAAAGT+GGG + chr7_4:55012177-55012196 Msa1163660:intron 15.0%
!! AAAAAAAAAATACATATAGC+AGG - chr7_4:55012609-55012628 None:intergenic 15.0%
!! AGAAATGAAATAGAGAAAAA+GGG - chr7_4:55004370-55004389 None:intergenic 20.0%
!! AAGAAATGAAATAGAGAAAA+AGG - chr7_4:55004371-55004390 None:intergenic 20.0%
!! TGCAATACATTGATAAAAAT+GGG - chr7_4:55004428-55004447 None:intergenic 20.0%
!! TTGCAATACATTGATAAAAA+TGG - chr7_4:55004429-55004448 None:intergenic 20.0%
!!! TGATTTTTAGACCTATTTTA+AGG + chr7_4:55004464-55004483 Msa1163660:intron 20.0%
!!! GATTTTTAGACCTATTTTAA+GGG + chr7_4:55004465-55004484 Msa1163660:intron 20.0%
!!! TTTGTTTAATGTTTTCACAA+TGG + chr7_4:55004653-55004672 Msa1163660:intron 20.0%
!!! AAATGGAAATTTTGATTATC+AGG + chr7_4:55005086-55005105 Msa1163660:intron 20.0%
!! ATACAAAATGAATATTAGCA+TGG - chr7_4:55005381-55005400 None:intergenic 20.0%
!! ATTCATAAAACATATCTTTG+AGG - chr7_4:55005528-55005547 None:intergenic 20.0%
!! AAATTCTATCATAGTTAAGA+GGG - chr7_4:55005616-55005635 None:intergenic 20.0%
!!! TTGAACTAAATGACATTTTA+AGG - chr7_4:55005639-55005658 None:intergenic 20.0%
!! CAATATGATCATGAAAAATT+AGG - chr7_4:55005866-55005885 None:intergenic 20.0%
!! CTTTAATCTTTATAAGATGT+TGG - chr7_4:55006673-55006692 None:intergenic 20.0%
!! AAAAATAAGTCACAATACAT+TGG - chr7_4:55007199-55007218 None:intergenic 20.0%
!! GCATTAATTATTAAAGGTAA+AGG - chr7_4:55007420-55007439 None:intergenic 20.0%
!! ACAGAAATAATCAAAGAAAA+AGG - chr7_4:55007782-55007801 None:intergenic 20.0%
!! ACTAAAAATATTAAGCTGAA+TGG - chr7_4:55008116-55008135 None:intergenic 20.0%
!!! AATATTTTTAGTTGTTAACC+AGG + chr7_4:55008124-55008143 Msa1163660:intron 20.0%
!!! ATATTTTTAGTTGTTAACCA+GGG + chr7_4:55008125-55008144 Msa1163660:intron 20.0%
!!! ATAAAAAGTAGCATACTTTT+AGG - chr7_4:55008184-55008203 None:intergenic 20.0%
!! CAAATAATTGAAGAAGATAA+TGG + chr7_4:55008864-55008883 Msa1163660:CDS 20.0%
!! ATCTTGATCAATTCTATTAA+TGG - chr7_4:55009260-55009279 None:intergenic 20.0%
!!! TTAAAACTTTTTACAAGCTA+CGG + chr7_4:55009472-55009491 Msa1163660:intron 20.0%
!! ATCACATTAATACATGATAT+GGG - chr7_4:55009536-55009555 None:intergenic 20.0%
!! CTTCTTATAATTATCATCAA+TGG - chr7_4:55010030-55010049 None:intergenic 20.0%
!!! TATTTTATTACATCATACGA+GGG - chr7_4:55010420-55010439 None:intergenic 20.0%
!!! TTATTTTATTACATCATACG+AGG - chr7_4:55010421-55010440 None:intergenic 20.0%
!! TTGTATACAATCTTTATCAA+AGG - chr7_4:55010585-55010604 None:intergenic 20.0%
!! TTGATAAAGATTGTATACAA+AGG + chr7_4:55010585-55010604 Msa1163660:intron 20.0%
!!! TGTTCTAAAGAGAAAATTTT+AGG + chr7_4:55011184-55011203 Msa1163660:intron 20.0%
!! TGAAAACATCAACATAAAAA+GGG - chr7_4:55011469-55011488 None:intergenic 20.0%
!! ATGAAAACATCAACATAAAA+AGG - chr7_4:55011470-55011489 None:intergenic 20.0%
!! TTTAGATTATAGTATTGCTA+CGG - chr7_4:55011509-55011528 None:intergenic 20.0%
!! TGAAAACATCAACATAAAAA+GGG - chr7_4:55011469-55011488 None:intergenic 20.0%
!! ATGAAAACATCAACATAAAA+AGG - chr7_4:55011470-55011489 None:intergenic 20.0%
!! TTTAGATTATAGTATTGCTA+CGG - chr7_4:55011509-55011528 None:intergenic 20.0%
!!! GTTATGCTTATTAGTTTATA+AGG + chr7_4:55011775-55011794 Msa1163660:intron 20.0%
!! TTCCTTTGTAAAATAGTATA+TGG + chr7_4:55011921-55011940 Msa1163660:intron 20.0%
!!! ATCCATATACTATTTTACAA+AGG - chr7_4:55011926-55011945 None:intergenic 20.0%
!! TATAATATAAGAAGCTTCAT+TGG - chr7_4:55013048-55013067 None:intergenic 20.0%
!!! TTTAAAATGAGTATGTTGTT+GGG - chr7_4:55013072-55013091 None:intergenic 20.0%
!!! ATTTAAAATGAGTATGTTGT+TGG - chr7_4:55013073-55013092 None:intergenic 20.0%
!!! TCATTTTAAATAGCATTGAT+AGG + chr7_4:55013082-55013101 Msa1163660:three_prime_UTR 20.0%
! AAAAGGGAAAGTTATGATTA+CGG - chr7_4:55004354-55004373 None:intergenic 25.0%
! GCAATACATTGATAAAAATG+GGG - chr7_4:55004427-55004446 None:intergenic 25.0%
! GTATATATTTGTAACAGATG+TGG + chr7_4:55004555-55004574 Msa1163660:intron 25.0%
!! TTCATACAATTTTATCTGGT+TGG - chr7_4:55004609-55004628 None:intergenic 25.0%
! TCAAAAAATTATCAAAGGAG+AGG + chr7_4:55004924-55004943 Msa1163660:CDS 25.0%
! GTATAATGTTGTAATTGCAA+TGG + chr7_4:55004969-55004988 Msa1163660:intron 25.0%
! TTAAATCATCAATATCGTCA+AGG - chr7_4:55005152-55005171 None:intergenic 25.0%
! AATGAAACTATTAAGATGCA+TGG + chr7_4:55005174-55005193 Msa1163660:intron 25.0%
! GAAATTCTATCATAGTTAAG+AGG - chr7_4:55005617-55005636 None:intergenic 25.0%
!! CATTTAGTTCAAAAATGTTC+TGG + chr7_4:55005647-55005666 Msa1163660:intron 25.0%
! AATAAAAACTGATCTCTGAA+TGG - chr7_4:55005815-55005834 None:intergenic 25.0%
! AAATTATCCACTTCAATTGA+TGG - chr7_4:55006037-55006056 None:intergenic 25.0%
! ATGAGTGATTAAATTACCAA+CGG - chr7_4:55006553-55006572 None:intergenic 25.0%
!!! TATAAGTATAGCCTTATATG+CGG - chr7_4:55006608-55006627 None:intergenic 25.0%
! AATCTTTATAAGATGTTGGA+AGG - chr7_4:55006669-55006688 None:intergenic 25.0%
!! ATAAATAAATCATAGCTTGC+AGG - chr7_4:55006913-55006932 None:intergenic 25.0%
! AGATAATCAGTACCTTAAAA+AGG + chr7_4:55007142-55007161 Msa1163660:CDS 25.0%
!! TCTTTTTACAGACCTTTTTA+AGG - chr7_4:55007157-55007176 None:intergenic 25.0%
!! TTTTTGTCTATTGTTTACAG+TGG + chr7_4:55007214-55007233 Msa1163660:intron 25.0%
!! TAACATTTTCCTAAATTGGT+CGG - chr7_4:55007603-55007622 None:intergenic 25.0%
!! TATTTCTGTCAAAACTAACT+TGG + chr7_4:55007793-55007812 Msa1163660:intron 25.0%
! TCAACTTTGTACATATCAAA+TGG - chr7_4:55007903-55007922 None:intergenic 25.0%
! ATGTACAAAGTTGAAATGAT+TGG + chr7_4:55007909-55007928 Msa1163660:CDS 25.0%
!!! TTGTAGATTAGTATTTTGGT+TGG - chr7_4:55008487-55008506 None:intergenic 25.0%
!!! TAGCTTGTAGATTAGTATTT+TGG - chr7_4:55008491-55008510 None:intergenic 25.0%
!!! AATATTTTGATCATGGAATC+AGG + chr7_4:55008633-55008652 Msa1163660:intron 25.0%
!!! ATATTTTGATCATGGAATCA+GGG + chr7_4:55008634-55008653 Msa1163660:intron 25.0%
! TATCTTCTTCAATTATTTGC+AGG - chr7_4:55008863-55008882 None:intergenic 25.0%
! AGAAATAGTACAATTTCCAA+GGG - chr7_4:55009077-55009096 None:intergenic 25.0%
! AAGAAATAGTACAATTTCCA+AGG - chr7_4:55009078-55009097 None:intergenic 25.0%
!! TTTTGAACACTTGATTTTTC+AGG + chr7_4:55009169-55009188 Msa1163660:intron 25.0%
! TGATCAATTCTATTAATGGA+GGG - chr7_4:55009256-55009275 None:intergenic 25.0%
! TTGATCAATTCTATTAATGG+AGG - chr7_4:55009257-55009276 None:intergenic 25.0%
! CACATTCAAATAAAATGATG+AGG - chr7_4:55009321-55009340 None:intergenic 25.0%
! AGCAAAAGTAATATCCAAAA+GGG + chr7_4:55009428-55009447 Msa1163660:CDS 25.0%
! CATCACATTAATACATGATA+TGG - chr7_4:55009537-55009556 None:intergenic 25.0%
! CATTCATCCACATATTATTA+GGG + chr7_4:55009690-55009709 Msa1163660:CDS 25.0%
!! AAATTAGACTGATGCTTTTA+CGG + chr7_4:55009804-55009823 Msa1163660:intron 25.0%
! AATAGGAGAATTAGAAAGAA+AGG + chr7_4:55010445-55010464 Msa1163660:intron 25.0%
!! ATTTTCCTTTGTATACAGAT+TGG - chr7_4:55010509-55010528 None:intergenic 25.0%
! GAAAAATATCCATGTTTGTA+TGG + chr7_4:55010614-55010633 Msa1163660:intron 25.0%
!!! AATCGATTTTCACAAATAGA+AGG - chr7_4:55010643-55010662 None:intergenic 25.0%
!!! AGTAGTGTTTTTGACATAAA+TGG + chr7_4:55010867-55010886 Msa1163660:intron 25.0%
!! CAAATAGCATATAAGTATTG+AGG - chr7_4:55010965-55010984 None:intergenic 25.0%
!!! ACTTATATGTCATTTTTGCA+TGG + chr7_4:55011053-55011072 Msa1163660:intron 25.0%
!!! CTTATATGTCATTTTTGCAT+GGG + chr7_4:55011054-55011073 Msa1163660:intron 25.0%
! AACACTAAATTTCTTCCAAA+TGG + chr7_4:55011861-55011880 Msa1163660:intron 25.0%
! TACATTCTTTCATATCCATT+TGG - chr7_4:55011879-55011898 None:intergenic 25.0%
! ATTCTACTGTTATGTTCAAA+AGG + chr7_4:55012281-55012300 Msa1163660:intron 25.0%
!!! ATAAAAAGCATGTTTGCTAT+GGG - chr7_4:55012517-55012536 None:intergenic 25.0%
!! AATAAAAAGCATGTTTGCTA+TGG - chr7_4:55012518-55012537 None:intergenic 25.0%
!!! GGCTTTAACTGTTAAAATTT+TGG - chr7_4:55012588-55012607 None:intergenic 25.0%
! TTAATGTGAACACATTCAAA+GGG - chr7_4:55013002-55013021 None:intergenic 25.0%
! TTAAAATGAGTATGTTGTTG+GGG - chr7_4:55013071-55013090 None:intergenic 25.0%
!! ATTGAACCATTTTTCCAAGA+CGG - chr7_4:55004307-55004326 None:intergenic 30.0%
AAAGGGAAAGTTATGATTAC+GGG - chr7_4:55004353-55004372 None:intergenic 30.0%
!! TAGACCTATTTTAAGGGTTT+AGG + chr7_4:55004471-55004490 Msa1163660:intron 30.0%
GTAACCTAAACCCTTAAAAT+AGG - chr7_4:55004478-55004497 None:intergenic 30.0%
! ATTAGAAAGTACATTGAGAG+CGG + chr7_4:55004766-55004785 Msa1163660:CDS 30.0%
GCTGGAAAAAATGTTGAATA+TGG + chr7_4:55004856-55004875 Msa1163660:CDS 30.0%
TGCGGTCAAAAAATTATCAA+AGG + chr7_4:55004919-55004938 Msa1163660:CDS 30.0%
AAAATTATCAAAGGAGAGGT+TGG + chr7_4:55004928-55004947 Msa1163660:intron 30.0%
!! TTCTTTTTGGTGTGAAAATG+AGG + chr7_4:55005039-55005058 Msa1163660:intron 30.0%
CAGTAACGTGCTAATTAAAA+TGG + chr7_4:55005069-55005088 Msa1163660:intron 30.0%
AGCAAAAATCTTAGCTATCA+AGG - chr7_4:55005253-55005272 None:intergenic 30.0%
! TTTTACTCGAATGATGAGTT+AGG - chr7_4:55005426-55005445 None:intergenic 30.0%
TAACTCATCATTCGAGTAAA+AGG + chr7_4:55005425-55005444 Msa1163660:intron 30.0%
TGTGGATGTTCATAAATTTC+TGG + chr7_4:55005454-55005473 Msa1163660:intron 30.0%
!! TTGGTTGAATGATTTTAGAG+TGG - chr7_4:55005586-55005605 None:intergenic 30.0%
! TCTATTGTTGGTAAAATCAC+TGG - chr7_4:55006736-55006755 None:intergenic 30.0%
ACTGATTATCTGTTTCCTTT+GGG - chr7_4:55007133-55007152 None:intergenic 30.0%
! TACTGATTATCTGTTTCCTT+TGG - chr7_4:55007134-55007153 None:intergenic 30.0%
AGTGGTTCAAATCTCAAAAA+GGG + chr7_4:55007232-55007251 Msa1163660:intron 30.0%
AAGTTTCACTGTTTGATGTT+TGG - chr7_4:55007332-55007351 None:intergenic 30.0%
AACATCAAACAGTGAAACTT+TGG + chr7_4:55007332-55007351 Msa1163660:CDS 30.0%
ATTTATACAACGGAATCTTC+AGG - chr7_4:55007387-55007406 None:intergenic 30.0%
AATCATGACAATTCCTCAAA+TGG - chr7_4:55007456-55007475 None:intergenic 30.0%
TCTAGTATTCATCTTCTGTA+AGG + chr7_4:55007493-55007512 Msa1163660:intron 30.0%
AAAAAGGAAATATCAGAGAC+TGG - chr7_4:55007766-55007785 None:intergenic 30.0%
! AATATGTCTGATTTGTCTAC+TGG + chr7_4:55008053-55008072 Msa1163660:CDS 30.0%
ATTTGTCTACTGGTATTAAC+AGG + chr7_4:55008063-55008082 Msa1163660:CDS 30.0%
TATCACTAGAACAATTTGGA+TGG + chr7_4:55008570-55008589 Msa1163660:intron 30.0%
ATCACTAGAACAATTTGGAT+GGG + chr7_4:55008571-55008590 Msa1163660:intron 30.0%
ATTGTAGCTATTTACTGTGA+TGG + chr7_4:55008673-55008692 Msa1163660:intron 30.0%
! TACCCTCTAGAAAAAAAACT+AGG + chr7_4:55008788-55008807 Msa1163660:intron 30.0%
!!! GACCTAGTTTTTTTTCTAGA+GGG - chr7_4:55008793-55008812 None:intergenic 30.0%
!!! AGACCTAGTTTTTTTTCTAG+AGG - chr7_4:55008794-55008813 None:intergenic 30.0%
CAAAAGTTAGAAGATGATGA+TGG - chr7_4:55008817-55008836 None:intergenic 30.0%
GAAATAGTACAATTTCCAAG+GGG - chr7_4:55009076-55009095 None:intergenic 30.0%
!!! CACTTGATTTTTCAGGATTA+TGG + chr7_4:55009176-55009195 Msa1163660:intron 30.0%
ATCAATTCTATTAATGGAGG+GGG - chr7_4:55009254-55009273 None:intergenic 30.0%
GATCAATTCTATTAATGGAG+GGG - chr7_4:55009255-55009274 None:intergenic 30.0%
TCTTTAATGTGGAAACATAC+AGG + chr7_4:55009282-55009301 Msa1163660:CDS 30.0%
ATTGATCTCAAATTCCATCA+TGG - chr7_4:55009381-55009400 None:intergenic 30.0%
GAGCAAAAGTAATATCCAAA+AGG + chr7_4:55009427-55009446 Msa1163660:CDS 30.0%
! ATTGTGTTAACATACCCTTT+TGG - chr7_4:55009445-55009464 None:intergenic 30.0%
! AGTCTCTCATTTTCTTTCAT+TGG + chr7_4:55009496-55009515 Msa1163660:intron 30.0%
TAATATGTGGATGAATGGAA+GGG - chr7_4:55009687-55009706 None:intergenic 30.0%
ATAATATGTGGATGAATGGA+AGG - chr7_4:55009688-55009707 None:intergenic 30.0%
CCTAATAATATGTGGATGAA+TGG - chr7_4:55009692-55009711 None:intergenic 30.0%
CCATTCATCCACATATTATT+AGG + chr7_4:55009689-55009708 Msa1163660:CDS 30.0%
!! TGAGGATGATTTTAAGTCAA+AGG + chr7_4:55009714-55009733 Msa1163660:CDS 30.0%
TACATCATTTGTATCGTGTT+AGG + chr7_4:55009766-55009785 Msa1163660:intron 30.0%
TTATGTACTTTAGTCAGTCA+TGG - chr7_4:55009847-55009866 None:intergenic 30.0%
CTGACTAAAGTACATAACTT+TGG + chr7_4:55009850-55009869 Msa1163660:intron 30.0%
!!! AATAGTCTTGCTTTTTTGTC+AGG + chr7_4:55009929-55009948 Msa1163660:intron 30.0%
! TTTTTGTCAGGTGAAAATGT+TGG + chr7_4:55009941-55009960 Msa1163660:intron 30.0%
! GGCTATTTCAATATCTTGAA+GGG - chr7_4:55009970-55009989 None:intergenic 30.0%
! AGGCTATTTCAATATCTTGA+AGG - chr7_4:55009971-55009990 None:intergenic 30.0%
ACATACGGTATGTCTATATT+TGG + chr7_4:55010136-55010155 Msa1163660:intron 30.0%
TATTTGTGTGCTCATATTTC+TGG + chr7_4:55010171-55010190 Msa1163660:intron 30.0%
!!! GTTTTTTCACTTGAAAGAGA+AGG + chr7_4:55010279-55010298 Msa1163660:CDS 30.0%
ATAAGTCAAGATGACTCATT+TGG - chr7_4:55010555-55010574 None:intergenic 30.0%
TATACCATGCTGAATTAATG+CGG - chr7_4:55010806-55010825 None:intergenic 30.0%
ATATTGGAAGAATTTCACGA+GGG - chr7_4:55011119-55011138 None:intergenic 30.0%
TATATTGGAAGAATTTCACG+AGG - chr7_4:55011120-55011139 None:intergenic 30.0%
TATGGAGTGATCAGATATAT+TGG - chr7_4:55011135-55011154 None:intergenic 30.0%
AATATATCTGATCACTCCAT+AGG + chr7_4:55011134-55011153 Msa1163660:intron 30.0%
ATATATCTGATCACTCCATA+GGG + chr7_4:55011135-55011154 Msa1163660:intron 30.0%
TAACAAAAAACACCAGTTTC+TGG + chr7_4:55011229-55011248 Msa1163660:intron 30.0%
AACAAAAAACACCAGTTTCT+GGG + chr7_4:55011230-55011249 Msa1163660:intron 30.0%
GTGAATTACAATAACTAGGA+TGG + chr7_4:55011253-55011272 Msa1163660:intron 30.0%
ATTATAGTATTGCTACGGAA+AGG - chr7_4:55011504-55011523 None:intergenic 30.0%
ATTATAGTATTGCTACGGAA+AGG - chr7_4:55011504-55011523 None:intergenic 30.0%
ACTGATAAGAAAAATCCTGT+TGG + chr7_4:55011674-55011693 Msa1163660:CDS 30.0%
! TATTAGTTTATAAGGGCATG+TGG + chr7_4:55011783-55011802 Msa1163660:intron 30.0%
AAGCTTAAAACTTACTTGAG+CGG - chr7_4:55012115-55012134 None:intergenic 30.0%
! AACCAAACTATAGTCGATTT+CGG - chr7_4:55012326-55012345 None:intergenic 30.0%
!! TAAAAAGCATGTTTGCTATG+GGG - chr7_4:55012516-55012535 None:intergenic 30.0%
TAAACTGCAATTCTTGTTGA+AGG + chr7_4:55012680-55012699 Msa1163660:CDS 30.0%
!!! TACGAAGTAGTTTTTTGACA+AGG + chr7_4:55012766-55012785 Msa1163660:three_prime_UTR 30.0%
!!! AGATCTTTCACCTCTTTTTT+TGG + chr7_4:55012856-55012875 Msa1163660:three_prime_UTR 30.0%
!!! GATCTTTCACCTCTTTTTTT+GGG + chr7_4:55012857-55012876 Msa1163660:three_prime_UTR 30.0%
CTTAATGTGAACACATTCAA+AGG - chr7_4:55013003-55013022 None:intergenic 30.0%
!!! CTTCATTGGTGTTTTTTAGA+AGG - chr7_4:55013034-55013053 None:intergenic 30.0%
!! CTTTTTCACTTCTTTGTTTG+AGG + chr7_4:55013106-55013125 Msa1163660:three_prime_UTR 30.0%
CTATATAATAAGAGAGGGTG+AGG + chr7_4:55004124-55004143 Msa1163660:five_prime_UTR 35.0%
! GACCTGATGAACTTTCTTTT+TGG + chr7_4:55005026-55005045 Msa1163660:intron 35.0%
CACCAAAAAGAAAGTTCATC+AGG - chr7_4:55005031-55005050 None:intergenic 35.0%
ATCAAAGATTTAACACGCGA+TGG - chr7_4:55005308-55005327 None:intergenic 35.0%
! TCGAGTAAAAGGAAGTTTTG+TGG + chr7_4:55005436-55005455 Msa1163660:intron 35.0%
TCTATCATAGTTAAGAGGGA+GGG - chr7_4:55005612-55005631 None:intergenic 35.0%
TTCTATCATAGTTAAGAGGG+AGG - chr7_4:55005613-55005632 None:intergenic 35.0%
TTGATCTATGCACGAGTTAT+TGG + chr7_4:55005883-55005902 Msa1163660:intron 35.0%
!!! TATGCACGAGTTATTGGTTT+TGG + chr7_4:55005889-55005908 Msa1163660:intron 35.0%
GAATTAGTGAATAGTCAGTG+AGG - chr7_4:55005924-55005943 None:intergenic 35.0%
ACTATCTCCATCAATTGAAG+TGG + chr7_4:55006027-55006046 Msa1163660:CDS 35.0%
! ATTGAAGTGGATAATTTGCC+TGG + chr7_4:55006040-55006059 Msa1163660:CDS 35.0%
TCTCTCATCTTCTGATCAAT+CGG + chr7_4:55006072-55006091 Msa1163660:CDS 35.0%
AAAGACCATCCTACAAAAAG+AGG + chr7_4:55006115-55006134 Msa1163660:CDS 35.0%
! TTTCTCACCATTTTCCTTTC+AGG + chr7_4:55006191-55006210 Msa1163660:intron 35.0%
AGAAAGGGACAGTAACATAA+TGG - chr7_4:55006704-55006723 None:intergenic 35.0%
GCAAGAAAATCTAGCATGTA+TGG + chr7_4:55006822-55006841 Msa1163660:intron 35.0%
AAATCTAGCATGTATGGTTG+TGG + chr7_4:55006828-55006847 Msa1163660:intron 35.0%
! TATTGTCATTTCAGTGCTGA+TGG + chr7_4:55006954-55006973 Msa1163660:intron 35.0%
CAGTGGTTCAAATCTCAAAA+AGG + chr7_4:55007231-55007250 Msa1163660:intron 35.0%
AAAAAGGGAAGAAACCAACT+AGG + chr7_4:55007247-55007266 Msa1163660:CDS 35.0%
ACAATTCCTCAAATGGTTTG+GGG - chr7_4:55007449-55007468 None:intergenic 35.0%
GACAATTCCTCAAATGGTTT+GGG - chr7_4:55007450-55007469 None:intergenic 35.0%
TGACAATTCCTCAAATGGTT+TGG - chr7_4:55007451-55007470 None:intergenic 35.0%
AAACGCAAAATTGATGCAGT+AGG + chr7_4:55007536-55007555 Msa1163660:CDS 35.0%
CTTCATGCAAAAGTGAAGAA+AGG + chr7_4:55007566-55007585 Msa1163660:CDS 35.0%
ACTTACAGATACTAACTGCT+TGG + chr7_4:55007675-55007694 Msa1163660:intron 35.0%
TTAAGGATGAAGTTGAGATG+CGG + chr7_4:55007713-55007732 Msa1163660:CDS 35.0%
GAAAATACCAATAGTCAGAG+AGG + chr7_4:55007839-55007858 Msa1163660:CDS 35.0%
AAATAGTCCTCTCTGACTAT+TGG - chr7_4:55007849-55007868 None:intergenic 35.0%
AATAGTCAGAGAGGACTATT+TGG + chr7_4:55007848-55007867 Msa1163660:CDS 35.0%
CAAAGTTGAAATGATTGGTG+AGG + chr7_4:55007914-55007933 Msa1163660:CDS 35.0%
GAATGGTGAAAAAGAGAAGA+TGG - chr7_4:55008099-55008118 None:intergenic 35.0%
!! TCATTGACTTTCTCTCCAAT+TGG - chr7_4:55008308-55008327 None:intergenic 35.0%
TTGGAGAGAAAGTCAATGAA+AGG + chr7_4:55008309-55008328 Msa1163660:intron 35.0%
TGGAGAGAAAGTCAATGAAA+GGG + chr7_4:55008310-55008329 Msa1163660:intron 35.0%
GTACATGAAACTATCTGTAG+AGG + chr7_4:55008403-55008422 Msa1163660:intron 35.0%
! TTCTAGTGATAGTGCAGTTT+CGG - chr7_4:55008561-55008580 None:intergenic 35.0%
GCACTATCACTAGAACAATT+TGG + chr7_4:55008566-55008585 Msa1163660:intron 35.0%
! TTTACTGTGATGGTGACTAA+TGG + chr7_4:55008683-55008702 Msa1163660:intron 35.0%
! TTACTGTGATGGTGACTAAT+GGG + chr7_4:55008684-55008703 Msa1163660:intron 35.0%
GTGATGCAACAGAAATCAAT+GGG - chr7_4:55008744-55008763 None:intergenic 35.0%
AGTGATGCAACAGAAATCAA+TGG - chr7_4:55008745-55008764 None:intergenic 35.0%
! AGGATGTAGTAGCTTTACAT+GGG - chr7_4:55008843-55008862 None:intergenic 35.0%
! CGACTATTCTTTGAGAAAAC+TGG + chr7_4:55008993-55009012 Msa1163660:CDS 35.0%
GATCAAGATGCTCTTTAATG+TGG + chr7_4:55009271-55009290 Msa1163660:CDS 35.0%
CTGTTAATGCTTCAAAACCT+GGG - chr7_4:55009573-55009592 None:intergenic 35.0%
TCTGTTAATGCTTCAAAACC+TGG - chr7_4:55009574-55009593 None:intergenic 35.0%
TCCACATATTATTAGGGATG+AGG + chr7_4:55009696-55009715 Msa1163660:CDS 35.0%
TCCTCATCCCTAATAATATG+TGG - chr7_4:55009700-55009719 None:intergenic 35.0%
ACTCAAATGCATAAAACCAC+AGG - chr7_4:55009888-55009907 None:intergenic 35.0%
TGAAATAGCCTCAAGATTAG+TGG + chr7_4:55009980-55009999 Msa1163660:CDS 35.0%
GAAATAGCCTCAAGATTAGT+GGG + chr7_4:55009981-55010000 Msa1163660:CDS 35.0%
CTAAAATCTTCACTGTCATG+AGG - chr7_4:55010077-55010096 None:intergenic 35.0%
TATAGACATACCGTATGTGT+GGG - chr7_4:55010134-55010153 None:intergenic 35.0%
ATATAGACATACCGTATGTG+TGG - chr7_4:55010135-55010154 None:intergenic 35.0%
TATTTGTAATCCGTCTACAC+AGG + chr7_4:55010233-55010252 Msa1163660:intron 35.0%
! TACAGATTGGAAGGTTCTAA+AGG - chr7_4:55010496-55010515 None:intergenic 35.0%
ACCTTCCAATCTGTATACAA+AGG + chr7_4:55010501-55010520 Msa1163660:intron 35.0%
TCCTTTGTATACAGATTGGA+AGG - chr7_4:55010505-55010524 None:intergenic 35.0%
!! ACTCATTTGGTCTTTTCATG+TGG - chr7_4:55010542-55010561 None:intergenic 35.0%
AGAAGGATACCATACAAACA+TGG - chr7_4:55010626-55010645 None:intergenic 35.0%
ATACCATGCTGAATTAATGC+GGG - chr7_4:55010805-55010824 None:intergenic 35.0%
GCATTAATTCAGCATGGTAT+AGG + chr7_4:55010805-55010824 Msa1163660:intron 35.0%
!!! TTTTCTCTTTAGAACACCTC+TGG - chr7_4:55011180-55011199 None:intergenic 35.0%
ACAAAAAACACCAGTTTCTG+GGG + chr7_4:55011231-55011250 Msa1163660:intron 35.0%
TGGGGTGAATTACAATAACT+AGG + chr7_4:55011249-55011268 Msa1163660:intron 35.0%
! AATATCTTTTGCCTGCAGTT+TGG + chr7_4:55011599-55011618 Msa1163660:intron 35.0%
!! CTTAAAAGCATTAGACCAAC+AGG - chr7_4:55011692-55011711 None:intergenic 35.0%
GTATGAGCTCAAAAAAGCTA+AGG + chr7_4:55011733-55011752 Msa1163660:CDS 35.0%
TCAAAAAAGCTAAGGTCAGT+TGG + chr7_4:55011741-55011760 Msa1163660:intron 35.0%
TTAGTAGAATGCTTTCCTTG+CGG - chr7_4:55011955-55011974 None:intergenic 35.0%
!! CAAGGAAAGCATTCTACTAA+AGG + chr7_4:55011955-55011974 Msa1163660:CDS 35.0%
! AAAGCATTCTACTAAAGGAC+TGG + chr7_4:55011960-55011979 Msa1163660:CDS 35.0%
AAGCATTCTACTAAAGGACT+GGG + chr7_4:55011961-55011980 Msa1163660:CDS 35.0%
TTTGCATATTCAGATTCCAG+GGG - chr7_4:55011997-55012016 None:intergenic 35.0%
CTTTGCATATTCAGATTCCA+GGG - chr7_4:55011998-55012017 None:intergenic 35.0%
ACTTTGCATATTCAGATTCC+AGG - chr7_4:55011999-55012018 None:intergenic 35.0%
TGGAATCTGAATATGCAAAG+TGG + chr7_4:55011998-55012017 Msa1163660:CDS 35.0%
TACAAGCAAACATGCTAACA+TGG + chr7_4:55012468-55012487 Msa1163660:intron 35.0%
! TGAATGTAAACCTTTTGTGC+AGG + chr7_4:55012656-55012675 Msa1163660:intron 35.0%
ACTAACACACCCAAAAAAAG+AGG - chr7_4:55012869-55012888 None:intergenic 35.0%
GAACAGAACACACTTCAACT+CGG - chr7_4:55004166-55004185 None:intergenic 40.0%
AAAGCAGAGTACGCAAAATC+AGG + chr7_4:55004233-55004252 Msa1163660:CDS 40.0%
GTTCAATCCTCCAAATTCGA+TGG + chr7_4:55004320-55004339 Msa1163660:CDS 40.0%
AAGTTATGATTACGGGCATG+AGG - chr7_4:55004346-55004365 None:intergenic 40.0%
TCTTCAATATGCACTCAGCA+TGG - chr7_4:55004583-55004602 None:intergenic 40.0%
TTTGAACCAGCATTCGACTT+CGG - chr7_4:55004811-55004830 None:intergenic 40.0%
! AGCGTGTGTGTCTTGTTAAT+TGG + chr7_4:55005004-55005023 Msa1163660:intron 40.0%
! AGGCTATCTAGAGAGGATTT+TGG - chr7_4:55005406-55005425 None:intergenic 40.0%
ATGAGTTAGGCTATCTAGAG+AGG - chr7_4:55005413-55005432 None:intergenic 40.0%
! AAGTGGATAATTTGCCTGGA+TGG + chr7_4:55006044-55006063 Msa1163660:CDS 40.0%
! TACCTCCTCTTTTTGTAGGA+TGG - chr7_4:55006123-55006142 None:intergenic 40.0%
TCCTACAAAAAGAGGAGGTA+TGG + chr7_4:55006123-55006142 Msa1163660:intron 40.0%
! ACCATACCTCCTCTTTTTGT+AGG - chr7_4:55006127-55006146 None:intergenic 40.0%
GTGAATGATATGCTGCAGAA+CGG + chr7_4:55006145-55006164 Msa1163660:intron 40.0%
ACTACCACCTGAAAGGAAAA+TGG - chr7_4:55006201-55006220 None:intergenic 40.0%
!! ATTTTCCTTTCAGGTGGTAG+TGG + chr7_4:55006200-55006219 Msa1163660:intron 40.0%
TTTGGAAGAGGATTGTTGTG+TGG - chr7_4:55006258-55006277 None:intergenic 40.0%
ACACAACAATCCTCTTCCAA+AGG + chr7_4:55006257-55006276 Msa1163660:CDS 40.0%
GTGAAAAATGCTGATGACTC+CGG + chr7_4:55006371-55006390 Msa1163660:CDS 40.0%
TGAAAAATGCTGATGACTCC+GGG + chr7_4:55006372-55006391 Msa1163660:CDS 40.0%
ACGTGATCTTGAGAATAGAC+TGG + chr7_4:55006400-55006419 Msa1163660:CDS 40.0%
TGATCTTGAGAATAGACTGG+AGG + chr7_4:55006403-55006422 Msa1163660:CDS 40.0%
TCCTGTTGAATCTTGACCAT+TGG - chr7_4:55006510-55006529 None:intergenic 40.0%
CACTGGCATCTTAGTAGAAA+GGG - chr7_4:55006719-55006738 None:intergenic 40.0%
TCACTGGCATCTTAGTAGAA+AGG - chr7_4:55006720-55006739 None:intergenic 40.0%
CAAAGAAAGCAGAATGGATC+TGG - chr7_4:55006869-55006888 None:intergenic 40.0%
CCATCACAAAGAAAGCAGAA+TGG - chr7_4:55006875-55006894 None:intergenic 40.0%
CCATTCTGCTTTCTTTGTGA+TGG + chr7_4:55006872-55006891 Msa1163660:intron 40.0%
!! AGTGCTGATGGAATGATGTT+TGG + chr7_4:55006966-55006985 Msa1163660:intron 40.0%
AAACCATCACATAGAGAGCA+AGG - chr7_4:55007002-55007021 None:intergenic 40.0%
! GATGGTTTTCTGCGTTATTC+TGG + chr7_4:55007014-55007033 Msa1163660:CDS 40.0%
! GTTATTCTGGAGGAATGTAC+CGG + chr7_4:55007027-55007046 Msa1163660:CDS 40.0%
GTAGGAACATTTACTCCACT+CGG - chr7_4:55007069-55007088 None:intergenic 40.0%
! ACAGAAGTTTGACTTTCAGC+AGG - chr7_4:55007300-55007319 None:intergenic 40.0%
GCTGAAAGTCAAACTTCTGT+AGG + chr7_4:55007300-55007319 Msa1163660:CDS 40.0%
ATTTGAGAGTTGCCATCTCT+GGG + chr7_4:55007358-55007377 Msa1163660:CDS 40.0%
TTCATTCCCCAAACCATTTG+AGG + chr7_4:55007440-55007459 Msa1163660:intron 40.0%
!! CTTCTGTAAGGTGCTTTTAC+AGG + chr7_4:55007505-55007524 Msa1163660:intron 40.0%
! CATTTTCCTAAATTGGTCGG+TGG - chr7_4:55007600-55007619 None:intergenic 40.0%
TACAGATACTAACTGCTTGG+TGG + chr7_4:55007678-55007697 Msa1163660:intron 40.0%
CTTGGAAGAGTTTGATCTGT+AGG + chr7_4:55007811-55007830 Msa1163660:intron 40.0%
GGACTATTTGGTTGACTGTA+TGG + chr7_4:55007860-55007879 Msa1163660:CDS 40.0%
ATGGTCACCATCAAAGTCAA+GGG + chr7_4:55007945-55007964 Msa1163660:CDS 40.0%
! TTTTCCCTTCCTCTAGTATG+TGG - chr7_4:55008013-55008032 None:intergenic 40.0%
GTCTACTGGTATTAACAGGT+TGG + chr7_4:55008067-55008086 Msa1163660:intron 40.0%
AATCACAAACTGCTATTCCC+TGG - chr7_4:55008145-55008164 None:intergenic 40.0%
GGAGAGAAAGTCAATGAAAG+GGG + chr7_4:55008311-55008330 Msa1163660:intron 40.0%
GAGAGAAAGTCAATGAAAGG+GGG + chr7_4:55008312-55008331 Msa1163660:intron 40.0%
TTGTTACGCAGCAGTTAGTT+AGG - chr7_4:55008443-55008462 None:intergenic 40.0%
! CAGGATGTAGTAGCTTTACA+TGG - chr7_4:55008844-55008863 None:intergenic 40.0%
ATTGCTACGTGTTTCGCAAA+TGG + chr7_4:55008892-55008911 Msa1163660:CDS 40.0%
TTGCTACGTGTTTCGCAAAT+GGG + chr7_4:55008893-55008912 Msa1163660:CDS 40.0%
TGGGAAATGACAAGATTGGA+GGG + chr7_4:55008922-55008941 Msa1163660:CDS 40.0%
TGTCGAAATCTGATGCAATC+AGG + chr7_4:55008961-55008980 Msa1163660:CDS 40.0%
GTCGAAATCTGATGCAATCA+GGG + chr7_4:55008962-55008981 Msa1163660:CDS 40.0%
TTGAGAAAACTGGAAACCCT+TGG + chr7_4:55009003-55009022 Msa1163660:CDS 40.0%
TGAGAAAACTGGAAACCCTT+GGG + chr7_4:55009004-55009023 Msa1163660:CDS 40.0%
! CTGAATAGTCTTTTGTTCCC+AGG - chr7_4:55009033-55009052 None:intergenic 40.0%
AAGACTATTCAGAAGCAACC+TGG + chr7_4:55009041-55009060 Msa1163660:CDS 40.0%
AGACTATTCAGAAGCAACCT+GGG + chr7_4:55009042-55009061 Msa1163660:CDS 40.0%
GGATATCATTTCCACACATC+AGG + chr7_4:55009125-55009144 Msa1163660:intron 40.0%
GATCTCAAATTCCATCATGG+CGG - chr7_4:55009378-55009397 None:intergenic 40.0%
AATATGTCCGAAATGCCACT+TGG + chr7_4:55009398-55009417 Msa1163660:CDS 40.0%
! ATATGTCCGAAATGCCACTT+GGG + chr7_4:55009399-55009418 Msa1163660:CDS 40.0%
TGCTCATTGATGCTAGCAAT+AGG + chr7_4:55009647-55009666 Msa1163660:CDS 40.0%
AAGTACATAACTTTGGACCG+TGG + chr7_4:55009857-55009876 Msa1163660:intron 40.0%
TAAAACCACAGGCAAAACCA+CGG - chr7_4:55009877-55009896 None:intergenic 40.0%
GTCAAATCCCACTAATCTTG+AGG - chr7_4:55009991-55010010 None:intergenic 40.0%
GAAGTGGAGATATATCACAG+TGG - chr7_4:55010055-55010074 None:intergenic 40.0%
ATAGACATACCGTATGTGTG+GGG - chr7_4:55010133-55010152 None:intergenic 40.0%
TGCCAACTTTGTCTCTGTAA+GGG - chr7_4:55010323-55010342 None:intergenic 40.0%
TTGCCAACTTTGTCTCTGTA+AGG - chr7_4:55010324-55010343 None:intergenic 40.0%
! TCCTATGGCATGGTAAGTTT+TGG + chr7_4:55010352-55010371 Msa1163660:intron 40.0%
ACCAAAACTTACCATGCCAT+AGG - chr7_4:55010356-55010375 None:intergenic 40.0%
GACAAGCGAATGTGCTTAAA+CGG + chr7_4:55010718-55010737 Msa1163660:intron 40.0%
ACAAGCGAATGTGCTTAAAC+GGG + chr7_4:55010719-55010738 Msa1163660:intron 40.0%
GGGACATTTACAGGTTGTTA+AGG - chr7_4:55011099-55011118 None:intergenic 40.0%
ATTTCACGAGGGACATTTAC+AGG - chr7_4:55011108-55011127 None:intergenic 40.0%
GTAGTATCTTACCATCCCTA+TGG - chr7_4:55011153-55011172 None:intergenic 40.0%
GTAAGATACTACTAGACCAG+AGG + chr7_4:55011161-55011180 Msa1163660:intron 40.0%
TTGTAATTCACCCCAGAAAC+TGG - chr7_4:55011244-55011263 None:intergenic 40.0%
TAACTAGGATGGATATTCCG+TGG + chr7_4:55011264-55011283 Msa1163660:intron 40.0%
ACGACAATGTTCTCTACTTC+AGG + chr7_4:55011346-55011365 Msa1163660:intron 40.0%
! TGTTCTCTACTTCAGGTTCT+AGG + chr7_4:55011353-55011372 Msa1163660:intron 40.0%
! TTCTAGGTTGACGAACTTTG+TGG + chr7_4:55011369-55011388 Msa1163660:CDS 40.0%
! TCTAGGTTGACGAACTTTGT+GGG + chr7_4:55011370-55011389 Msa1163660:CDS 40.0%
TTTGTGGGCATTCTTAACCA+AGG + chr7_4:55011385-55011404 Msa1163660:CDS 40.0%
!! CTTTTAAGTGAAGTTGCCCT+TGG + chr7_4:55011704-55011723 Msa1163660:CDS 40.0%
GAGCTCATACACATTTCCAA+GGG - chr7_4:55011723-55011742 None:intergenic 40.0%
TGAGCTCATACACATTTCCA+AGG - chr7_4:55011724-55011743 None:intergenic 40.0%
TATATGGATAAACCTCCGCA+AGG + chr7_4:55011937-55011956 Msa1163660:CDS 40.0%
GTGGGAAAATTTCTACTACC+TGG + chr7_4:55012195-55012214 Msa1163660:intron 40.0%
AGCCGAAATCGACTATAGTT+TGG + chr7_4:55012321-55012340 Msa1163660:intron 40.0%
AAGCAAACATGCTAACATGG+AGG + chr7_4:55012471-55012490 Msa1163660:intron 40.0%
TGCAGTTTAACCTGCACAAA+AGG - chr7_4:55012669-55012688 None:intergenic 40.0%
TGCAATTCTTGTTGAAGGTG+AGG + chr7_4:55012685-55012704 Msa1163660:CDS 40.0%
AGGTTCCATCACAAGAAATG+AGG + chr7_4:55012705-55012724 Msa1163660:CDS 40.0%
TCCATCACAAGAAATGAGGA+TGG + chr7_4:55012709-55012728 Msa1163660:exon 40.0%
TCCATCCTCATTTCTTGTGA+TGG - chr7_4:55012713-55012732 None:intergenic 40.0%
GAAATGAGGATGGAAACTAG+AGG + chr7_4:55012719-55012738 Msa1163660:exon 40.0%
!!! AAACTAGAGGTGTGCTGTTT+TGG + chr7_4:55012732-55012751 Msa1163660:three_prime_UTR 40.0%
!!! AACTAGAGGTGTGCTGTTTT+GGG + chr7_4:55012733-55012752 Msa1163660:three_prime_UTR 40.0%
GACTTGTACATAGTCCATGT+GGG + chr7_4:55012788-55012807 Msa1163660:three_prime_UTR 40.0%
TCTCGTAACTTCTCGTGATA+AGG + chr7_4:55012813-55012832 Msa1163660:three_prime_UTR 40.0%
!!! AGGTCTCATTTTGAGTTGAC+TGG + chr7_4:55012833-55012852 Msa1163660:three_prime_UTR 40.0%
!!! TTTTTTGGGTGTGTTAGTGC+AGG + chr7_4:55012871-55012890 Msa1163660:three_prime_UTR 40.0%
!!! TTTTTGGGTGTGTTAGTGCA+GGG + chr7_4:55012872-55012891 Msa1163660:three_prime_UTR 40.0%
CAGAAATCTCATGCATGATC+TGG + chr7_4:55012921-55012940 Msa1163660:three_prime_UTR 40.0%
TTTGCGTACTCTGCTTTCCA+TGG - chr7_4:55004230-55004249 None:intergenic 45.0%
! TTTTCCAAGACGGAGCTTCT+CGG - chr7_4:55004297-55004316 None:intergenic 45.0%
GAAGCTCCGTCTTGGAAAAA+TGG + chr7_4:55004298-55004317 Msa1163660:CDS 45.0%
AGAACTTAGAGTCGCTTCGT+TGG + chr7_4:55004728-55004747 Msa1163660:CDS 45.0%
GAACTTAGAGTCGCTTCGTT+GGG + chr7_4:55004729-55004748 Msa1163660:CDS 45.0%
! AGAAAGTACATTGAGAGCGG+TGG + chr7_4:55004769-55004788 Msa1163660:CDS 45.0%
! TTTTCCAGCACTCGACTTAG+AGG - chr7_4:55004845-55004864 None:intergenic 45.0%
TTGATCACGTCCTGTCATTC+AGG + chr7_4:55005323-55005342 Msa1163660:intron 45.0%
CGATTCTAGTCCTGAATGAC+AGG - chr7_4:55005336-55005355 None:intergenic 45.0%
TAGTTAAGAGGGAGGGAAGT+TGG - chr7_4:55005605-55005624 None:intergenic 45.0%
CGCATATCTACTAAGCCTGA+TGG + chr7_4:55005956-55005975 Msa1163660:CDS 45.0%
TCTACTAAGCCTGATGGTCA+AGG + chr7_4:55005962-55005981 Msa1163660:CDS 45.0%
GTTCCAAGAGACACTTAGCA+TGG - chr7_4:55006009-55006028 None:intergenic 45.0%
CTCATCTTCTGATCAATCGG+CGG + chr7_4:55006075-55006094 Msa1163660:CDS 45.0%
GACCATCCTACAAAAAGAGG+AGG + chr7_4:55006118-55006137 Msa1163660:CDS 45.0%
! CTCACCATTTTCCTTTCAGG+TGG + chr7_4:55006194-55006213 Msa1163660:intron 45.0%
TTGTACCACTACCACCTGAA+AGG - chr7_4:55006208-55006227 None:intergenic 45.0%
!! TGGTAGTGGTACAAATGTCG+AGG + chr7_4:55006214-55006233 Msa1163660:CDS 45.0%
CAACAATCCTCTTCCAAAGG+TGG + chr7_4:55006260-55006279 Msa1163660:CDS 45.0%
! TTTAGTGCCACCTTTGGAAG+AGG - chr7_4:55006270-55006289 None:intergenic 45.0%
CTTCCAAAGGTGGCACTAAA+CGG + chr7_4:55006270-55006289 Msa1163660:CDS 45.0%
TTCCAAAGGTGGCACTAAAC+GGG + chr7_4:55006271-55006290 Msa1163660:CDS 45.0%
AGAGGGTGAGCAAAAGTCAA+AGG + chr7_4:55006304-55006323 Msa1163660:CDS 45.0%
TCAAAGGCCGCTAAAGTCAA+GGG + chr7_4:55006320-55006339 Msa1163660:CDS 45.0%
CACATCTCCCTTGACTTTAG+CGG - chr7_4:55006330-55006349 None:intergenic 45.0%
GAAAAATGCTGATGACTCCG+GGG + chr7_4:55006373-55006392 Msa1163660:CDS 45.0%
AGCCCAGAGATCTTTGATCT+GGG - chr7_4:55006429-55006448 None:intergenic 45.0%
GCCAATGGTCAAGATTCAAC+AGG + chr7_4:55006506-55006525 Msa1163660:CDS 45.0%
ATATGCGGCAGAGCTTCTTA+AGG - chr7_4:55006593-55006612 None:intergenic 45.0%
AAGAAGCTCTGCCGCATATA+AGG + chr7_4:55006594-55006613 Msa1163660:intron 45.0%
AGCATGTATGGTTGTGGATG+AGG + chr7_4:55006834-55006853 Msa1163660:intron 45.0%
GCTGATGGAATGATGTTTGG+AGG + chr7_4:55006969-55006988 Msa1163660:CDS 45.0%
AGTCCTTGCTCTCTATGTGA+TGG + chr7_4:55006996-55007015 Msa1163660:CDS 45.0%
! GGTTTTCTGCGTTATTCTGG+AGG + chr7_4:55007017-55007036 Msa1163660:CDS 45.0%
AGGGAAGTGGAAAATCCCAA+AGG + chr7_4:55007115-55007134 Msa1163660:CDS 45.0%
GATTTGAGAGTTGCCATCTC+TGG + chr7_4:55007357-55007376 Msa1163660:CDS 45.0%
!! CTGTAAGGTGCTTTTACAGG+TGG + chr7_4:55007508-55007527 Msa1163660:intron 45.0%
! AGGTGCTTTTACAGGTGGAA+TGG + chr7_4:55007513-55007532 Msa1163660:intron 45.0%
CGCAAAATTGATGCAGTAGG+TGG + chr7_4:55007539-55007558 Msa1163660:CDS 45.0%
CATGGTCACCATCAAAGTCA+AGG + chr7_4:55007944-55007963 Msa1163660:CDS 45.0%
TGGTCACCATCAAAGTCAAG+GGG + chr7_4:55007946-55007965 Msa1163660:CDS 45.0%
ACTTTGCCCCTTGACTTTGA+TGG - chr7_4:55007955-55007974 None:intergenic 45.0%
! AGTGCTGTTCATGATGCTTC+TGG + chr7_4:55007972-55007991 Msa1163660:CDS 45.0%
CAGTGATCGTCATCTTCAGA+AGG - chr7_4:55008285-55008304 None:intergenic 45.0%
AGATGACGATCACTGCCAAT+TGG + chr7_4:55008290-55008309 Msa1163660:intron 45.0%
AAAGTCAATGAAAGGGGGAC+AGG + chr7_4:55008317-55008336 Msa1163660:intron 45.0%
TAGTGCAGTTTCGGTTGTAG+TGG - chr7_4:55008552-55008571 None:intergenic 45.0%
TGCTACGTGTTTCGCAAATG+GGG + chr7_4:55008894-55008913 Msa1163660:CDS 45.0%
CGAGTGGGAAATGACAAGAT+TGG + chr7_4:55008918-55008937 Msa1163660:CDS 45.0%
GTGGGAAATGACAAGATTGG+AGG + chr7_4:55008921-55008940 Msa1163660:CDS 45.0%
CAAGATTGGAGGGAACAAAC+TGG + chr7_4:55008932-55008951 Msa1163660:CDS 45.0%
CTGAATATCGACCTGATGTG+TGG - chr7_4:55009139-55009158 None:intergenic 45.0%
! GTTTTGTAGATCCGCCATGA+TGG + chr7_4:55009364-55009383 Msa1163660:intron 45.0%
CAGTTTCCCAAGTGGCATTT+CGG - chr7_4:55009408-55009427 None:intergenic 45.0%
! CTTTTGCTCAGTTTCCCAAG+TGG - chr7_4:55009416-55009435 None:intergenic 45.0%
ATGCTTCAAAACCTGGGATG+AGG - chr7_4:55009567-55009586 None:intergenic 45.0%
CAATGCTGATCCATCAGTCA+GGG + chr7_4:55009618-55009637 Msa1163660:CDS 45.0%
ATCAATGGAGTCGTCGTTGT+TGG - chr7_4:55010015-55010034 None:intergenic 45.0%
TCTTCACTGTCATGAGGAAG+TGG - chr7_4:55010071-55010090 None:intergenic 45.0%
TAGACATACCGTATGTGTGG+GGG - chr7_4:55010132-55010151 None:intergenic 45.0%
GCCAACTTTGTCTCTGTAAG+GGG - chr7_4:55010322-55010341 None:intergenic 45.0%
TTGGCAACAGAATGCTCCTA+TGG + chr7_4:55010337-55010356 Msa1163660:CDS 45.0%
AACAGAATGCTCCTATGGCA+TGG + chr7_4:55010342-55010361 Msa1163660:CDS 45.0%
TGACCCGCATTAATTCAGCA+TGG + chr7_4:55010799-55010818 Msa1163660:intron 45.0%
ATCTGATCACTCCATAGGGA+TGG + chr7_4:55011139-55011158 Msa1163660:intron 45.0%
CTGTAGTATGCACGTTACCA+CGG - chr7_4:55011284-55011303 None:intergenic 45.0%
AACCATATAGCCAGTTGCTG+GGG - chr7_4:55011434-55011453 None:intergenic 45.0%
GAACCATATAGCCAGTTGCT+GGG - chr7_4:55011435-55011454 None:intergenic 45.0%
AGAACCATATAGCCAGTTGC+TGG - chr7_4:55011436-55011455 None:intergenic 45.0%
! TTTTGCCTGCAGTTTGGCAA+AGG + chr7_4:55011605-55011624 Msa1163660:intron 45.0%
TTTGCCTGCAGTTTGGCAAA+GGG + chr7_4:55011606-55011625 Msa1163660:intron 45.0%
AAATCCCTTTGCCAAACTGC+AGG - chr7_4:55011613-55011632 None:intergenic 45.0%
ATGATGTCGTTGTTCCCTGT+GGG + chr7_4:55012025-55012044 Msa1163660:CDS 45.0%
!! ACCGGTGTCATCAAATGTCA+AGG + chr7_4:55012050-55012069 Msa1163660:CDS 45.0%
! GCCTTGACATTTGATGACAC+CGG - chr7_4:55012054-55012073 None:intergenic 45.0%
ATAGCACGTCAATGATAGCC+AGG - chr7_4:55012216-55012235 None:intergenic 45.0%
!! TGTTTGCTATGGGGTGAGAA+GGG - chr7_4:55012507-55012526 None:intergenic 45.0%
!! ATGTTTGCTATGGGGTGAGA+AGG - chr7_4:55012508-55012527 None:intergenic 45.0%
!!! ACTAGAGGTGTGCTGTTTTG+GGG + chr7_4:55012734-55012753 Msa1163660:three_prime_UTR 45.0%
GGACTTGTACATAGTCCATG+TGG + chr7_4:55012787-55012806 Msa1163660:three_prime_UTR 45.0%
GAAGTTACGAGAATCCCACA+TGG - chr7_4:55012805-55012824 None:intergenic 45.0%
!! GTATATAAATAAATAAATAA+TGG - chr7_4:55009749-55009768 None:intergenic 5.0%
!! TGTAATAAAATAAAATAAAT+AGG + chr7_4:55010428-55010447 Msa1163660:intron 5.0%
!!! TATATGTATTTTTTTTTTTT+TGG + chr7_4:55012611-55012630 Msa1163660:intron 5.0%
! TCCATGGCTTCGCGTTTTGA+GGG - chr7_4:55004214-55004233 None:intergenic 50.0%
! TTCCATGGCTTCGCGTTTTG+AGG - chr7_4:55004215-55004234 None:intergenic 50.0%
CATGAGGCCATCGAATTTGG+AGG - chr7_4:55004330-55004349 None:intergenic 50.0%
AAGTACATTGAGAGCGGTGG+TGG + chr7_4:55004772-55004791 Msa1163660:CDS 50.0%
GTTTCGCAAACTTCACGTGC+TGG + chr7_4:55004886-55004905 Msa1163660:CDS 50.0%
! TGCTGCCTATGTCTTTTGCC+TGG + chr7_4:55005269-55005288 Msa1163660:intron 50.0%
CTTCGCCAGGCAAAAGACAT+AGG - chr7_4:55005277-55005296 None:intergenic 50.0%
GATGGAATAGCAACTTCGCC+AGG - chr7_4:55005290-55005309 None:intergenic 50.0%
GCACCATGCTAAGTGTCTCT+TGG + chr7_4:55006003-55006022 Msa1163660:CDS 50.0%
GATGAGAGACTACTCCATCC+AGG - chr7_4:55006061-55006080 None:intergenic 50.0%
ATGATATGCTGCAGAACGGC+TGG + chr7_4:55006149-55006168 Msa1163660:intron 50.0%
TCCAAAGGTGGCACTAAACG+GGG + chr7_4:55006272-55006291 Msa1163660:CDS 50.0%
TAAACGGGGGAAAGATGCAG+AGG + chr7_4:55006286-55006305 Msa1163660:CDS 50.0%
AAACGGGGGAAAGATGCAGA+GGG + chr7_4:55006287-55006306 Msa1163660:CDS 50.0%
GTCAAAGGCCGCTAAAGTCA+AGG + chr7_4:55006319-55006338 Msa1163660:CDS 50.0%
AGGCCCAGATCAAAGATCTC+TGG + chr7_4:55006423-55006442 Msa1163660:CDS 50.0%
GGCCCAGATCAAAGATCTCT+GGG + chr7_4:55006424-55006443 Msa1163660:CDS 50.0%
GAGCCCAGAGATCTTTGATC+TGG - chr7_4:55006430-55006449 None:intergenic 50.0%
! CAAAGATCTCTGGGCTCTGA+AGG + chr7_4:55006433-55006452 Msa1163660:CDS 50.0%
AGCAGAGATGCGTGAAATGC+TGG + chr7_4:55006481-55006500 Msa1163660:CDS 50.0%
CGTGAAATGCTGGATGCCAA+TGG + chr7_4:55006491-55006510 Msa1163660:CDS 50.0%
!! AGCTTGATTTGCGTGACCGT+TGG + chr7_4:55006534-55006553 Msa1163660:CDS 50.0%
CGGAAATGTATCCAGTGCAC+CGG - chr7_4:55007049-55007068 None:intergenic 50.0%
GCACTGGATACATTTCCGAG+TGG + chr7_4:55007051-55007070 Msa1163660:CDS 50.0%
TATTGCCTCCGCCATCATCA+AGG + chr7_4:55007271-55007290 Msa1163660:CDS 50.0%
TCAGCAGGAGTCCTTGATGA+TGG - chr7_4:55007285-55007304 None:intergenic 50.0%
ATCTTCAGGCAACCCAGAGA+TGG - chr7_4:55007373-55007392 None:intergenic 50.0%
TCTGCTCCACCGACCAATTT+AGG + chr7_4:55007591-55007610 Msa1163660:intron 50.0%
! ACTAACTGCTTGGTGGTCAG+TGG + chr7_4:55007685-55007704 Msa1163660:CDS 50.0%
GGATGAAGTTGAGATGCGGA+AGG + chr7_4:55007717-55007736 Msa1163660:CDS 50.0%
AAGTTGAGATGCGGAAGGCA+AGG + chr7_4:55007722-55007741 Msa1163660:CDS 50.0%
AGATGCGGAAGGCAAGGTAT+TGG + chr7_4:55007728-55007747 Msa1163660:intron 50.0%
GATTGGTGAGGCTTCTAGCA+TGG + chr7_4:55007926-55007945 Msa1163660:CDS 50.0%
TCATGATGCTTCTGGCCTAC+AGG + chr7_4:55007980-55007999 Msa1163660:CDS 50.0%
GTATGTGGCCAGAATCCTGT+AGG - chr7_4:55007998-55008017 None:intergenic 50.0%
GGATTCTGGCCACATACTAG+AGG + chr7_4:55008001-55008020 Msa1163660:CDS 50.0%
TCTGGCCACATACTAGAGGA+AGG + chr7_4:55008005-55008024 Msa1163660:CDS 50.0%
CTGGCCACATACTAGAGGAA+GGG + chr7_4:55008006-55008025 Msa1163660:CDS 50.0%
! ATGGTGACTAATGGGAGCAC+TGG + chr7_4:55008692-55008711 Msa1163660:intron 50.0%
!! TGGTGACTAATGGGAGCACT+GGG + chr7_4:55008693-55008712 Msa1163660:intron 50.0%
TTTCGCAAATGGGGTCGAGT+GGG + chr7_4:55008903-55008922 Msa1163660:CDS 50.0%
GATTGGAGGGAACAAACTGG+AGG + chr7_4:55008935-55008954 Msa1163660:CDS 50.0%
GAAAACTGGAAACCCTTGGG+AGG + chr7_4:55009007-55009026 Msa1163660:CDS 50.0%
GCAATGCTGATCCATCAGTC+AGG + chr7_4:55009617-55009636 Msa1163660:CDS 50.0%
AGCAAGCTATCCCTGACTGA+TGG - chr7_4:55009631-55009650 None:intergenic 50.0%
TACTCATGCCCCCACACATA+CGG + chr7_4:55010121-55010140 Msa1163660:CDS 50.0%
GTAATCCGTCTACACAGGAC+TGG + chr7_4:55010238-55010257 Msa1163660:intron 50.0%
AGACTCCAGTCCTGTGTAGA+CGG - chr7_4:55010246-55010265 None:intergenic 50.0%
GCCCCTTACAGAGACAAAGT+TGG + chr7_4:55010318-55010337 Msa1163660:CDS 50.0%
GAGGTGCAATTCTCAGTCCT+TGG - chr7_4:55011405-55011424 None:intergenic 50.0%
ACTGAGCACTCTTGCTGACA+AGG - chr7_4:55011646-55011665 None:intergenic 50.0%
GTAGAATGCTTTCCTTGCGG+AGG - chr7_4:55011952-55011971 None:intergenic 50.0%
GATGATGTCGTTGTTCCCTG+TGG + chr7_4:55012024-55012043 Msa1163660:CDS 50.0%
!! GTTTGCTATGGGGTGAGAAG+GGG - chr7_4:55012506-55012525 None:intergenic 50.0%
ACCCTCAAAACGCGAAGCCA+TGG + chr7_4:55004210-55004229 Msa1163660:CDS 55.0%
GGTTGCAATGGGACTCTTGC+AGG - chr7_4:55004276-55004295 None:intergenic 55.0%
CGGAGCTTCTCGGTTGCAAT+GGG - chr7_4:55004287-55004306 None:intergenic 55.0%
ACGGAGCTTCTCGGTTGCAA+TGG - chr7_4:55004288-55004307 None:intergenic 55.0%
GGGCATGAGGCCATCGAATT+TGG - chr7_4:55004333-55004352 None:intergenic 55.0%
TCCAGCACTCGACTTAGAGG+CGG - chr7_4:55004842-55004861 None:intergenic 55.0%
!! CGTGCTGGTTGCAAGCATTG+CGG + chr7_4:55004901-55004920 Msa1163660:CDS 55.0%
TCAATCGGCGGTCAGTGAGT+TGG + chr7_4:55006087-55006106 Msa1163660:CDS 55.0%
CCAAAGGTGGCACTAAACGG+GGG + chr7_4:55006273-55006292 Msa1163660:CDS 55.0%
AAATGCTGATGACTCCGGGG+CGG + chr7_4:55006376-55006395 Msa1163660:CDS 55.0%
! CTTCGGTTCGCAGGTAGAGT+AGG - chr7_4:55007087-55007106 None:intergenic 55.0%
CACTTCCCTTCAGCACGCTT+CGG - chr7_4:55007104-55007123 None:intergenic 55.0%
GGCGGAGGCAATATCCTAGT+TGG - chr7_4:55007264-55007283 None:intergenic 55.0%
!! GCAGGAGTCCTTGATGATGG+CGG - chr7_4:55007282-55007301 None:intergenic 55.0%
! GGTGGTCAGTGGAGCACTTA+AGG + chr7_4:55007696-55007715 Msa1163660:CDS 55.0%
GCTTCTGGCCTACAGGATTC+TGG + chr7_4:55007987-55008006 Msa1163660:CDS 55.0%
!! GGTGACTAATGGGAGCACTG+GGG + chr7_4:55008694-55008713 Msa1163660:intron 55.0%
!! GTGACTAATGGGAGCACTGG+GGG + chr7_4:55008695-55008714 Msa1163660:intron 55.0%
GTTTCGCAAATGGGGTCGAG+TGG + chr7_4:55008902-55008921 Msa1163660:CDS 55.0%
TTTGTTCCCAGGCCTCCCAA+GGG - chr7_4:55009022-55009041 None:intergenic 55.0%
! TTTTGTTCCCAGGCCTCCCA+AGG - chr7_4:55009023-55009042 None:intergenic 55.0%
ACCTGGGAGATTCTTCCCCT+TGG + chr7_4:55009058-55009077 Msa1163660:CDS 55.0%
TCCAAGGGGAAGAATCTCCC+AGG - chr7_4:55009062-55009081 None:intergenic 55.0%
GATGTCTGCTTCCTCATCCC+AGG + chr7_4:55009553-55009572 Msa1163660:intron 55.0%
!! TTGGACCGTGGTTTTGCCTG+TGG + chr7_4:55009869-55009888 Msa1163660:intron 55.0%
AGCCCCAGCAACTGGCTATA+TGG + chr7_4:55011429-55011448 Msa1163660:CDS 55.0%
ACTGGGCAAGAAAATGCCCC+TGG + chr7_4:55011978-55011997 Msa1163660:CDS 55.0%
CGTTGTTCCCTGTGGGAAAC+CGG + chr7_4:55012032-55012051 Msa1163660:CDS 55.0%
!! GATGACACCGGTTTCCCACA+GGG - chr7_4:55012042-55012061 None:intergenic 55.0%
!! TGATGACACCGGTTTCCCAC+AGG - chr7_4:55012043-55012062 None:intergenic 55.0%
GAGAGGGTGAGGAGAGAGAG+TGG + chr7_4:55004135-55004154 Msa1163660:five_prime_UTR 60.0%
GCAACCGAGAAGCTCCGTCT+TGG + chr7_4:55004290-55004309 Msa1163660:CDS 60.0%
! GAGAGCGGTGGTGGTAGTAG+TGG + chr7_4:55004781-55004800 Msa1163660:CDS 60.0%
GGCACACCGAAGTCGAATGC+TGG + chr7_4:55004802-55004821 Msa1163660:CDS 60.0%
! AGCCTGATGGTCAAGGTGCC+AGG + chr7_4:55005969-55005988 Msa1163660:CDS 60.0%
! GCCTGATGGTCAAGGTGCCA+GGG + chr7_4:55005970-55005989 Msa1163660:CDS 60.0%
! CCTGATGGTCAAGGTGCCAG+GGG + chr7_4:55005971-55005990 Msa1163660:CDS 60.0%
! TGGTCAAGGTGCCAGGGGTT+TGG + chr7_4:55005976-55005995 Msa1163660:CDS 60.0%
! AAGGTGCCAGGGGTTTGGCT+TGG + chr7_4:55005981-55006000 Msa1163660:CDS 60.0%
! ATGGTGCCAAGCCAAACCCC+TGG - chr7_4:55005990-55006009 None:intergenic 60.0%
CCCCCGTTTAGTGCCACCTT+TGG - chr7_4:55006276-55006295 None:intergenic 60.0%
AGGGAGATGTGTCTGCGAGC+AGG + chr7_4:55006339-55006358 Msa1163660:CDS 60.0%
GGGAGATGTGTCTGCGAGCA+GGG + chr7_4:55006340-55006359 Msa1163660:CDS 60.0%
TGTGTCTGCGAGCAGGGTAG+CGG + chr7_4:55006346-55006365 Msa1163660:CDS 60.0%
! GGAGGAATGTACCGGTGCAC+TGG + chr7_4:55007035-55007054 Msa1163660:CDS 60.0%
! TTCAGCACGCTTCGGTTCGC+AGG - chr7_4:55007096-55007115 None:intergenic 60.0%
TGCGAACCGAAGCGTGCTGA+AGG + chr7_4:55007095-55007114 Msa1163660:CDS 60.0%
GCGAACCGAAGCGTGCTGAA+GGG + chr7_4:55007096-55007115 Msa1163660:CDS 60.0%
CGAAGCGTGCTGAAGGGAAG+TGG + chr7_4:55007102-55007121 Msa1163660:CDS 60.0%
!! GGAGTCCTTGATGATGGCGG+AGG - chr7_4:55007279-55007298 None:intergenic 60.0%
!! TAATGGGAGCACTGGGGGTC+TGG + chr7_4:55008700-55008719 Msa1163660:intron 60.0%
!! AATGGGAGCACTGGGGGTCT+GGG + chr7_4:55008701-55008720 Msa1163660:intron 60.0%
TGGAAACCCTTGGGAGGCCT+GGG + chr7_4:55009013-55009032 Msa1163660:CDS 60.0%
TAGCCAGTTGCTGGGGCTTC+AGG - chr7_4:55011427-55011446 None:intergenic 60.0%
GCCGCCTCTAAGTCGAGTGC+TGG + chr7_4:55004838-55004857 Msa1163660:CDS 65.0%
CCCCTGGCACCTTGACCATC+AGG - chr7_4:55005974-55005993 None:intergenic 65.0%
CTCAAGATCACGTGCCGCCC+CGG - chr7_4:55006393-55006412 None:intergenic 65.0%
!! ATGGGAGCACTGGGGGTCTG+GGG + chr7_4:55008702-55008721 Msa1163660:intron 65.0%
! ACTGGGGGTCTGGGGCTGTT+GGG + chr7_4:55008710-55008729 Msa1163660:intron 65.0%
CTGGAAACCCTTGGGAGGCC+TGG + chr7_4:55009012-55009031 Msa1163660:CDS 65.0%
CCAGTTGCTGGGGCTTCAGG+AGG - chr7_4:55011424-55011443 None:intergenic 65.0%
CCTCCTGAAGCCCCAGCAAC+TGG + chr7_4:55011421-55011440 Msa1163660:CDS 65.0%
! CACTGGGGGTCTGGGGCTGT+TGG + chr7_4:55008709-55008728 Msa1163660:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55004085 55013165 55004085 ID=Msa1163660;Name=Msa1163660
chr7_4 mRNA 55004085 55013165 55004085 ID=Msa1163660-mRNA-1;Parent=Msa1163660;Name=Msa1163660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=118|1|1|1|1|1|20|440|1011
chr7_4 exon 55004085 55004352 55004085 ID=Msa1163660-mRNA-1:exon:16043;Parent=Msa1163660-mRNA-1
chr7_4 exon 55004572 55004621 55004572 ID=Msa1163660-mRNA-1:exon:16044;Parent=Msa1163660-mRNA-1
chr7_4 exon 55004714 55004945 55004714 ID=Msa1163660-mRNA-1:exon:16045;Parent=Msa1163660-mRNA-1
chr7_4 exon 55005953 55006139 55005953 ID=Msa1163660-mRNA-1:exon:16046;Parent=Msa1163660-mRNA-1
chr7_4 exon 55006213 55006555 55006213 ID=Msa1163660-mRNA-1:exon:16047;Parent=Msa1163660-mRNA-1
chr7_4 exon 55006968 55007163 55006968 ID=Msa1163660-mRNA-1:exon:16048;Parent=Msa1163660-mRNA-1
chr7_4 exon 55007234 55007398 55007234 ID=Msa1163660-mRNA-1:exon:16049;Parent=Msa1163660-mRNA-1
chr7_4 exon 55007527 55007587 55007527 ID=Msa1163660-mRNA-1:exon:16050;Parent=Msa1163660-mRNA-1
chr7_4 exon 55007683 55007743 55007683 ID=Msa1163660-mRNA-1:exon:16051;Parent=Msa1163660-mRNA-1
chr7_4 exon 55007833 55008084 55007833 ID=Msa1163660-mRNA-1:exon:16052;Parent=Msa1163660-mRNA-1
chr7_4 exon 55008851 55009085 55008851 ID=Msa1163660-mRNA-1:exon:16053;Parent=Msa1163660-mRNA-1
chr7_4 exon 55009191 55009303 55009191 ID=Msa1163660-mRNA-1:exon:16054;Parent=Msa1163660-mRNA-1
chr7_4 exon 55009373 55009449 55009373 ID=Msa1163660-mRNA-1:exon:16055;Parent=Msa1163660-mRNA-1
chr7_4 exon 55009575 55009735 55009575 ID=Msa1163660-mRNA-1:exon:16056;Parent=Msa1163660-mRNA-1
chr7_4 exon 55009951 55010142 55009951 ID=Msa1163660-mRNA-1:exon:16057;Parent=Msa1163660-mRNA-1
chr7_4 exon 55010255 55010363 55010255 ID=Msa1163660-mRNA-1:exon:16058;Parent=Msa1163660-mRNA-1
chr7_4 exon 55011368 55011450 55011368 ID=Msa1163660-mRNA-1:exon:16059;Parent=Msa1163660-mRNA-1
chr7_4 exon 55011617 55011754 55011617 ID=Msa1163660-mRNA-1:exon:16060;Parent=Msa1163660-mRNA-1
chr7_4 exon 55011937 55012119 55011937 ID=Msa1163660-mRNA-1:exon:16061;Parent=Msa1163660-mRNA-1
chr7_4 exon 55012678 55013165 55012678 ID=Msa1163660-mRNA-1:exon:16062;Parent=Msa1163660-mRNA-1
chr7_4 five_prime_UTR 55004085 55004202 55004085 ID=Msa1163660-mRNA-1:five_prime_utr;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55004203 55004352 55004203 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55004572 55004621 55004572 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55004714 55004945 55004714 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55005953 55006139 55005953 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55006213 55006555 55006213 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55006968 55007163 55006968 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55007234 55007398 55007234 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55007527 55007587 55007527 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55007683 55007743 55007683 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55007833 55008084 55007833 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55008851 55009085 55008851 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55009191 55009303 55009191 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55009373 55009449 55009373 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55009575 55009735 55009575 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55009951 55010142 55009951 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55010255 55010363 55010255 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55011368 55011450 55011368 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55011617 55011754 55011617 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55011937 55012119 55011937 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 CDS 55012678 55012725 55012678 ID=Msa1163660-mRNA-1:cds;Parent=Msa1163660-mRNA-1
chr7_4 three_prime_UTR 55012726 55013165 55012726 ID=Msa1163660-mRNA-1:three_prime_utr;Parent=Msa1163660-mRNA-1
Gene Sequence

>Msa1163660

ATGTCGAACCCTCAAAACGCGAAGCCATGGAAAGCAGAGTACGCAAAATCAGGTCGTTCGTCATGCAGAACCTGCAAGAGTCCCATTGCAACCGAGAAGCTCCGTCTTGGAAAAATGGTTCAATCCTCCAAATTCGATGGCCTCATGCCCATGTGGAACCATGCTGAGTGCATATTGAAGAAAGCCAACCAGATAAAATTAGTTGACGATGTTGAGAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATTAGAAAGTACATTGAGAGCGGTGGTGGTAGTAGTGGCACACCGAAGTCGAATGCTGGTTCAAAGTCGAATGCCGCCTCTAAGTCGAGTGCTGGAAAAAATGTTGAATATGGTATTGAAGTTTCGCAAACTTCACGTGCTGGTTGCAAGCATTGCGGTCAAAAAATTATCAAAGGAGAGATTCGCATATCTACTAAGCCTGATGGTCAAGGTGCCAGGGGTTTGGCTTGGCACCATGCTAAGTGTCTCTTGGAACTATCTCCATCAATTGAAGTGGATAATTTGCCTGGATGGAGTAGTCTCTCATCTTCTGATCAATCGGCGGTCAGTGAGTTGGCTACAAAAGACCATCCTACAAAAAGAGGAGGTGGTAGTGGTACAAATGTCGAGGCTGAAGATGTTAAAGAATCCACACAACAATCCTCTTCCAAAGGTGGCACTAAACGGGGGAAAGATGCAGAGGGTGAGCAAAAGTCAAAGGCCGCTAAAGTCAAGGGAGATGTGTCTGCGAGCAGGGTAGCGGCAGTGAAAAATGCTGATGACTCCGGGGCGGCACGTGATCTTGAGAATAGACTGGAGGCCCAGATCAAAGATCTCTGGGCTCTGAAGGATGATCTTAAAAAGCATGTGACAACAGCAGAGATGCGTGAAATGCTGGATGCCAATGGTCAAGATTCAACAGGATCAGAGCTTGATTTGCGTGACCGTTGTGCTGATGGAATGATGTTTGGAGGACTTAGTCCTTGCTCTCTATGTGATGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCACTGGATACATTTCCGAGTGGAGTAAATGTTCCTACTCTACCTGCGAACCGAAGCGTGCTGAAGGGAAGTGGAAAATCCCAAAGGAAACAGATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAACTAGGATATTGCCTCCGCCATCATCAAGGACTCCTGCTGAAAGTCAAACTTCTGTAGGTCATAACCAAACATCAAACAGTGAAACTTTGGCTGATTTGAGAGTTGCCATCTCTGGGTTGCCTGAAGATTCCGTTGTGGAATGGAAACGCAAAATTGATGCAGTAGGTGGAGTGCTTCATGCAAAAGTGAAGAAAGATACTAACTGCTTGGTGGTCAGTGGAGCACTTAAGGATGAAGTTGAGATGCGGAAGGCAAGGAAGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATCAAAGTCAAGGGGCAAAGTGCTGTTCATGATGCTTCTGGCCTACAGGATTCTGGCCACATACTAGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATCCTGCAAATAATTGAAGAAGATAATGGGTCAGATTGCTACGTGTTTCGCAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGGAACAAACTGGAGGAAATGTCGAAATCTGATGCAATCAGGGAATTCAAACGACTATTCTTTGAGAAAACTGGAAACCCTTGGGAGGCCTGGGAACAAAAGACTATTCAGAAGCAACCTGGGAGATTCTTCCCCTTGGAAATTGATTATGGAGTTAACAAACAAGTTGTGAAAAAGAGTAAAAACAATGCAGACAGCAAATTACCCCCTCCATTAATAGAATTGATCAAGATGCTCTTTAATGTGGAAACATACAGATCCGCCATGATGGAATTTGAGATCAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATCCAAAAGGGTTTTGAAGCATTAACAGATATACAAAATCTTTTTAAAAGCAGCAATGCTGATCCATCAGTCAGGGATAGCTTGCTCATTGATGCTAGCAATAGGTTCTTCACTGTGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTGGAAGCCCTTCAAGATATTGAAATAGCCTCAAGATTAGTGGGATTTGACGCCAACAACGACGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGACAGTGAAGATTTTAGATTAGTTGAGAAGTTTCTACATACTACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGAGAAGGTGAATTTGATAAATATGCCCCTTACAGAGACAAAGTTGGCAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACGAACTTTGTGGGCATTCTTAACCAAGGACTGAGAATTGCACCTCCTGAAGCCCCAGCAACTGGCTATATGTTTGGCAAAGGGATTTACTTTGCTGACCTTGTCAGCAAGAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTAAGTGAAGTTGCCCTTGGAAATGTGTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCGCAAGGAAAGCATTCTACTAAAGGACTGGGCAAGAAAATGCCCCTGGAATCTGAATATGCAAAGTGGAGAGATGATGTCGTTGTTCCCTGTGGGAAACCGGTGTCATCAAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTTTATAATACCGCTCAAGTTAAACTGCAATTCTTGTTGAAGGTGAGGTTCCATCACAAGAAATGA
Protein sequence

>Msa1163660

MSNPQNAKPWKAEYAKSGRSSCRTCKSPIATEKLRLGKMVQSSKFDGLMPMWNHAECILKKANQIKLVDDVENLESLRWEDQQKIRKYIESGGGSSGTPKSNAGSKSNAASKSSAGKNVEYGIEVSQTSRAGCKHCGQKIIKGEIRISTKPDGQGARGLAWHHAKCLLELSPSIEVDNLPGWSSLSSSDQSAVSELATKDHPTKRGGGSGTNVEAEDVKESTQQSSSKGGTKRGKDAEGEQKSKAAKVKGDVSASRVAAVKNADDSGAARDLENRLEAQIKDLWALKDDLKKHVTTAEMREMLDANGQDSTGSELDLRDRCADGMMFGGLSPCSLCDGFLRYSGGMYRCTGYISEWSKCSYSTCEPKRAEGKWKIPKETDNQYLKKWFKSQKGKKPTRILPPPSSRTPAESQTSVGHNQTSNSETLADLRVAISGLPEDSVVEWKRKIDAVGGVLHAKVKKDTNCLVVSGALKDEVEMRKARKMKIPIVREDYLVDCMERKKKLPFDMYKVEMIGEASSMVTIKVKGQSAVHDASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIEEDNGSDCYVFRKWGRVGNDKIGGNKLEEMSKSDAIREFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQVVKKSKNNADSKLPPPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFKSSNADPSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEDFRLVEKFLHTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYRDKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPQGKHSTKGLGKKMPLESEYAKWRDDVVVPCGKPVSSNVKASELMYNEYIVYNTAQVKLQFLLKVRFHHKK*