AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376080 MtrunA17_Chr7g0260961 97.628 1012 17 2 1 1011 1 1006 0.0 2048
Msa1376080 MtrunA17_Chr1g0195401 39.300 486 264 11 542 1008 127 600 9.10e-112 358
Msa1376080 MtrunA17_Chr4g0026531 30.477 817 482 21 242 1010 28 806 8.95e-110 359
Msa1376080 MtrunA17_Chr1g0195411 47.895 190 97 2 786 974 4 192 1.17e-55 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376080 AT2G31320.1 68.209 1016 285 10 1 1011 1 983 0.0 1397
Msa1376080 AT4G02390.3 39.754 488 264 10 542 1010 89 565 3.53e-107 345
Msa1376080 AT4G02390.2 39.754 488 264 10 542 1010 158 634 1.13e-106 346
Msa1376080 AT4G02390.1 39.754 488 264 10 542 1010 160 636 1.14e-106 346
Msa1376080 AT5G22470.1 30.303 825 479 22 234 1010 29 805 1.34e-100 335
Msa1376080 AT3G14890.2 28.782 271 176 7 9 266 49 315 6.75e-12 70.1
Msa1376080 AT3G14890.1 31.658 199 122 5 9 197 49 243 9.21e-11 66.6

Find 275 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCATCCACATATTATT+AGG 0.105501 tig0019784:-18520 Msa1376080:CDS
GGGCATGAGGCCATCGAATT+TGG 0.181131 tig0019784:+23890 None:intergenic
CGACTATTCTTTGAGAAAAC+TGG 0.242070 tig0019784:-19216 Msa1376080:CDS
TAGCCAGTTGCTGGGGCTTC+AGG 0.259348 tig0019784:+16786 None:intergenic
CAGTGGTTCAAATCTCAAAA+AGG 0.259566 tig0019784:-20978 Msa1376080:CDS
TGTTCTCTACTTCAGGTTCT+AGG 0.267279 tig0019784:-16857 Msa1376080:intron
ATCTTGATCAATTCTATTAA+TGG 0.278783 tig0019784:+18952 None:intergenic
AAACTAAAGGTGTGCTGTTT+TGG 0.280410 tig0019784:-15457 Msa1376080:three_prime_UTR
GGTTGCAATGGGACTCTTGC+AGG 0.282998 tig0019784:+23947 None:intergenic
GATTTGAGAGTTGCCATCTC+TGG 0.283526 tig0019784:-20852 Msa1376080:CDS
CATTCATCCACATATTATTA+GGG 0.284288 tig0019784:-18519 Msa1376080:CDS
TACTGATTATCTGTTTCCTT+TGG 0.287387 tig0019784:+21078 None:intergenic
TATCTTCTTCAATTATTTGC+AGG 0.292751 tig0019784:+19349 None:intergenic
CAAATAATTGAAGAAGATAA+TGG 0.297851 tig0019784:-19345 Msa1376080:CDS
AATAGTCAGAGAGGACTATT+TGG 0.300812 tig0019784:-20361 Msa1376080:CDS
ACTGATTATCTGTTTCCTTT+GGG 0.313751 tig0019784:+21079 None:intergenic
CAGTTTCCCAAGTGGCATTT+CGG 0.317336 tig0019784:+18804 None:intergenic
GCTTCTGGCCTACAGGATTC+TGG 0.317832 tig0019784:-20222 Msa1376080:CDS
CTGGAAACCCTTGGGAGGCC+TGG 0.325393 tig0019784:-19197 Msa1376080:CDS
ATTTGTCTACTGGTATTAAC+AGG 0.328166 tig0019784:-20146 Msa1376080:intron
ACTTTGCATATTCAGATTCC+AGG 0.332395 tig0019784:+16214 None:intergenic
AGTGCTGTTCATGATGCTTC+TGG 0.337109 tig0019784:-20237 Msa1376080:CDS
TTGCCAACTTTGTCTCTGTA+AGG 0.340991 tig0019784:+17888 None:intergenic
AGCCCCAGCAACTGGCTATA+TGG 0.348497 tig0019784:-16781 Msa1376080:intron
GAGCCCAGAGATCTTTGCTC+TGG 0.349228 tig0019784:+21785 None:intergenic
ACTTTGCCCCTTGACTTTGA+TGG 0.354008 tig0019784:+20257 None:intergenic
CACTTCCCTTCAGCACGCTT+CGG 0.357140 tig0019784:+21108 None:intergenic
TTGGGTGTGTTTGTTAGTGC+AGG 0.358270 tig0019784:-15314 Msa1376080:three_prime_UTR
CCTCCTGAAGCCCCAGCAAC+TGG 0.366832 tig0019784:-16789 Msa1376080:CDS
AGCCTGATGGTCAAGGTGCC+AGG 0.368170 tig0019784:-22243 Msa1376080:CDS
GGACTATTTGGTTGACTGTA+TGG 0.370013 tig0019784:-20349 Msa1376080:CDS
TGGTCAAGGTGCCAGGGGTT+TGG 0.371181 tig0019784:-22236 Msa1376080:CDS
CTTCCAAAGGTGGCACTAAA+CGG 0.382184 tig0019784:-21942 Msa1376080:CDS
TTCCAAAGGTGGCACTAAAC+GGG 0.385197 tig0019784:-21941 Msa1376080:CDS
AAGTTTCACTGTTTGATGTT+TGG 0.385231 tig0019784:+20880 None:intergenic
TGTCGAAATCTGATGCAATC+AGG 0.391979 tig0019784:-19248 Msa1376080:CDS
AAGGTGCCAGGGGTTTGGCT+TGG 0.393692 tig0019784:-22231 Msa1376080:CDS
GGTGGTCAGTGGAGCGCTTA+AGG 0.394139 tig0019784:-20513 Msa1376080:CDS
ATCAATGGAGTCGTCGTTGT+TGG 0.395881 tig0019784:+18197 None:intergenic
ATTTATACAACGGAATCTTC+AGG 0.397858 tig0019784:+20825 None:intergenic
AATATGTCTGATTTGTCTAC+TGG 0.398742 tig0019784:-20156 Msa1376080:CDS
ATTGCTACGTGTTTCGCAAA+TGG 0.400336 tig0019784:-19317 Msa1376080:CDS
TTTAAAATGAGTATGTTGTT+GGG 0.404812 tig0019784:+15118 None:intergenic
ATTGTGTTAACATACCCTTT+TGG 0.408371 tig0019784:+18767 None:intergenic
AGGCCCAGAGCAAAGATCTC+TGG 0.408797 tig0019784:-21789 Msa1376080:CDS
AGTGCTGATGGAATGATGTT+TGG 0.410252 tig0019784:-21243 Msa1376080:CDS
TTGCTACGTGTTTCGCAAAT+GGG 0.412307 tig0019784:-19316 Msa1376080:CDS
AGATAATCAGTACCTTAAAA+AGG 0.412335 tig0019784:-21067 Msa1376080:intron
CCTAATAATATGTGGATGAA+TGG 0.413880 tig0019784:+18520 None:intergenic
TCATGATGCTTCTGGCCTAC+AGG 0.417766 tig0019784:-20229 Msa1376080:CDS
CTTAAAAGCATTAGACCAAC+AGG 0.419926 tig0019784:+16521 None:intergenic
TAAACTGCAATTCTTGTTGA+AGG 0.420099 tig0019784:-15509 Msa1376080:CDS
TGAAATAGCCTCAAGATTAG+TGG 0.423165 tig0019784:-18229 Msa1376080:CDS
CTTCTTATAATTATCATCAA+TGG 0.427067 tig0019784:+18182 None:intergenic
TCCATCCTCATTTCTTGTGA+TGG 0.429629 tig0019784:+15479 None:intergenic
AAATAGTCCTCTCTGACTAT+TGG 0.430169 tig0019784:+20363 None:intergenic
AAATTATCCACTTCAATTGA+TGG 0.434056 tig0019784:+22178 None:intergenic
ATTTGAGAGTTGCCATCTCT+GGG 0.434588 tig0019784:-20851 Msa1376080:CDS
TTAGTAGTAGTATATACTAT+TGG 0.438112 tig0019784:-24136 Msa1376080:five_prime_UTR
CCCCTGGCACCTTGACCATC+AGG 0.441143 tig0019784:+22241 None:intergenic
ATTTAAAATGAGTATGTTGT+TGG 0.442452 tig0019784:+15117 None:intergenic
CGTTGTTCCCTGTGGGAAAC+CGG 0.449287 tig0019784:-16178 Msa1376080:CDS
TATAATATAAGAAGCTTCAT+TGG 0.450993 tig0019784:+15142 None:intergenic
GAGCAAAAGTAATATCCAAA+AGG 0.451321 tig0019784:-18782 Msa1376080:CDS
ACCTGGGAGATTCTTCCCCT+TGG 0.453013 tig0019784:-19151 Msa1376080:CDS
AACATCAAACAGTGAAACTT+TGG 0.454487 tig0019784:-20877 Msa1376080:CDS
TCAACTTTGTACATATCAAA+TGG 0.457516 tig0019784:+20309 None:intergenic
TCTCGTAACTTCTCGTGATA+AGG 0.457713 tig0019784:-15376 Msa1376080:three_prime_UTR
AGCAGAGATGCGTGAAATGC+TGG 0.457723 tig0019784:-21731 Msa1376080:CDS
TGCTCATTGATGCTAGCAAT+AGG 0.458324 tig0019784:-18562 Msa1376080:CDS
TATTGTCATTTCAGTGCTGA+TGG 0.458515 tig0019784:-21255 Msa1376080:intron
CAAGATTGGAGGGAACAAAC+TGG 0.458917 tig0019784:-19277 Msa1376080:CDS
GAGAGGGTGAGGAGAGAGAG+TGG 0.459076 tig0019784:-24085 Msa1376080:five_prime_UTR
CACATCTCCCTTGACTTTAG+CGG 0.462505 tig0019784:+21885 None:intergenic
TTGAGAAAACTGGAAACCCT+TGG 0.466084 tig0019784:-19206 Msa1376080:CDS
TTCTAGGTTGACGAACTTTG+TGG 0.466090 tig0019784:-16841 Msa1376080:CDS
TGGAAACCCTTGGGAGGCCT+GGG 0.466277 tig0019784:-19196 Msa1376080:CDS
TCTCTCATCTTCTGATCAAT+CGG 0.467085 tig0019784:-22140 Msa1376080:CDS
AAATAATTGAAGAAGATAAT+GGG 0.467660 tig0019784:-19344 Msa1376080:CDS
TTCAGCACGCTTCGGTTCGC+AGG 0.467797 tig0019784:+21116 None:intergenic
TTTGCGTACTCTGCTTTCCA+TGG 0.468447 tig0019784:+23993 None:intergenic
ATTGAAGTGGATAATTTGCC+TGG 0.469195 tig0019784:-22172 Msa1376080:CDS
AGTCCTTGCTCTCTATGTGA+TGG 0.470443 tig0019784:-21213 Msa1376080:CDS
AAAGCAGAGTACGCAAAATC+AGG 0.472100 tig0019784:-23987 Msa1376080:CDS
CGGAGCTTCTCGGTTGCAAT+GGG 0.474695 tig0019784:+23936 None:intergenic
AGGCTATTTCAATATCTTGA+AGG 0.475473 tig0019784:+18241 None:intergenic
GCACCATGCTAAGTGTCTCT+TGG 0.477110 tig0019784:-22209 Msa1376080:CDS
AGCAGATCTCATGCATGATC+TGG 0.478850 tig0019784:-15266 Msa1376080:three_prime_UTR
GAACTTAGAGTCGCTTCGTT+GGG 0.480032 tig0019784:-23483 Msa1376080:CDS
AGGGAGATGTGTCTGCGAGC+AGG 0.481221 tig0019784:-21873 Msa1376080:CDS
CTCAAGATCACGTGCCGCCC+CGG 0.481538 tig0019784:+21822 None:intergenic
GGAGGAATGTACCGGTGCAC+TGG 0.484725 tig0019784:-21174 Msa1376080:CDS
TTTGCCTGCAGTTTGGCAAA+GGG 0.487008 tig0019784:-16604 Msa1376080:intron
GCCGCCTCTAAGTCGAGTGC+TGG 0.487078 tig0019784:-23374 Msa1376080:CDS
TGCCAACTTTGTCTCTGTAA+GGG 0.487650 tig0019784:+17889 None:intergenic
GCCAATGGTCAAGATTCAAC+AGG 0.488288 tig0019784:-21706 Msa1376080:CDS
AGAACCATATAGCCAGTTGC+TGG 0.488876 tig0019784:+16777 None:intergenic
TCTTTAATGTGGAAACATAC+AGG 0.491969 tig0019784:-18927 Msa1376080:intron
TGAGAAAACTGGAAACCCTT+GGG 0.492370 tig0019784:-19205 Msa1376080:CDS
AGCCCAGAGATCTTTGCTCT+GGG 0.492857 tig0019784:+21786 None:intergenic
GCAATGCTGATCCATCAGTC+AGG 0.495787 tig0019784:-18592 Msa1376080:CDS
TTTAGTGCCACCTTTGGAAG+AGG 0.498151 tig0019784:+21945 None:intergenic
TCCTGTTGAATCTTGACCAT+TGG 0.499269 tig0019784:+21705 None:intergenic
TGTGTCTGCGAGCAGGGTAG+CGG 0.500249 tig0019784:-21866 Msa1376080:CDS
AAAGCATTCTACTAAAGGAC+TGG 0.500575 tig0019784:-16250 Msa1376080:CDS
GGCCCAGAGCAAAGATCTCT+GGG 0.501573 tig0019784:-21788 Msa1376080:CDS
ACGGAGCTTCTCGGTTGCAA+TGG 0.502052 tig0019784:+23935 None:intergenic
TCCACATATTATTAGGGATG+AGG 0.505116 tig0019784:-18513 Msa1376080:CDS
AGCAAAAGTAATATCCAAAA+GGG 0.506378 tig0019784:-18781 Msa1376080:intron
CAAGGAAAGCATTCTACTAA+AGG 0.506710 tig0019784:-16255 Msa1376080:CDS
GTTTCGCAAACTTCACGTGC+TGG 0.507650 tig0019784:-23326 Msa1376080:CDS
TCTTCACTGTCATGAGGAAG+TGG 0.510609 tig0019784:+18141 None:intergenic
ACCCTCAAAACGCGAAGCCA+TGG 0.510955 tig0019784:-24010 Msa1376080:CDS
CTATATAATAAGAGAGGGTG+AGG 0.512951 tig0019784:-24096 Msa1376080:five_prime_UTR
AAGAAATAGTACAATTTCCA+AGG 0.514163 tig0019784:+19134 None:intergenic
TCAGCAGGAGTCCTTGATGA+TGG 0.514978 tig0019784:+20927 None:intergenic
CTTAATGTGAACACATTCAA+AGG 0.517305 tig0019784:+15187 None:intergenic
CGAAGCGTGCTGAAGGGAAG+TGG 0.517630 tig0019784:-21107 Msa1376080:CDS
AAGACTATTCAGAAGCAACC+TGG 0.518065 tig0019784:-19168 Msa1376080:CDS
ATCAATTCTATTAATGGAGG+GGG 0.518129 tig0019784:+18958 None:intergenic
GCCTGATGGTCAAGGTGCCA+GGG 0.518214 tig0019784:-22242 Msa1376080:CDS
GAAATAGCCTCAAGATTAGT+GGG 0.518552 tig0019784:-18228 Msa1376080:CDS
CGCAAAATTGATGCAGTAGG+TGG 0.519400 tig0019784:-20670 Msa1376080:CDS
GCCAACTTTGTCTCTGTAAG+GGG 0.519558 tig0019784:+17890 None:intergenic
TCTAGGTTGACGAACTTTGT+GGG 0.519658 tig0019784:-16840 Msa1376080:CDS
GAGGTGCAATTCTCAGTCCT+TGG 0.520896 tig0019784:+16808 None:intergenic
CATGAGGCCATCGAATTTGG+AGG 0.521208 tig0019784:+23893 None:intergenic
GGGAGATGTGTCTGCGAGCA+GGG 0.522810 tig0019784:-21872 Msa1376080:CDS
TTGGCAACAGAATGCTCCTA+TGG 0.523040 tig0019784:-17872 Msa1376080:CDS
TGCAATTCTTGTTGAAGGTG+AGG 0.523731 tig0019784:-15504 Msa1376080:CDS
ACAGAAGTTTGACTTTCAGC+AGG 0.526769 tig0019784:+20912 None:intergenic
GTCGAAATCTGATGCAATCA+GGG 0.527691 tig0019784:-19247 Msa1376080:CDS
GGCTATTTCAATATCTTGAA+GGG 0.528095 tig0019784:+18242 None:intergenic
TTAAAATGAGTATGTTGTTG+GGG 0.528688 tig0019784:+15119 None:intergenic
AAGTACATTGAGAGCGGTGG+TGG 0.529024 tig0019784:-23440 Msa1376080:CDS
GTCAAAGGCCGCTAAAGTCA+AGG 0.529642 tig0019784:-21893 Msa1376080:CDS
CGCATATCTACTAAGCCTGA+TGG 0.530256 tig0019784:-22256 Msa1376080:CDS
TGATGACACCGGTTTCCCAC+AGG 0.530388 tig0019784:+16170 None:intergenic
ACTGGGCAAGAAAATGCCCC+TGG 0.531158 tig0019784:-16232 Msa1376080:CDS
ATAATATGTGGATGAATGGA+AGG 0.532035 tig0019784:+18524 None:intergenic
AAGTGGATAATTTGCCTGGA+TGG 0.532909 tig0019784:-22168 Msa1376080:CDS
TCCTCATCCCTAATAATATG+TGG 0.533242 tig0019784:+18512 None:intergenic
TTTGAACCAGCATTCGACTT+CGG 0.536967 tig0019784:+23404 None:intergenic
AGCTTGATTTGCGTGACCGT+TGG 0.538235 tig0019784:-21678 Msa1376080:intron
TGCGAACCGAAGCGTGCTGA+AGG 0.538550 tig0019784:-21114 Msa1376080:CDS
GAACCATATAGCCAGTTGCT+GGG 0.542371 tig0019784:+16778 None:intergenic
CTTCGGTTCGCAGGTAGAGT+AGG 0.542539 tig0019784:+21125 None:intergenic
GATCAAGATGCTCTTTAATG+TGG 0.543678 tig0019784:-18938 Msa1376080:CDS
ATGTACAAAGTTGAAATGAT+TGG 0.544000 tig0019784:-20300 Msa1376080:CDS
AGAACTTAGAGTCGCTTCGT+TGG 0.544067 tig0019784:-23484 Msa1376080:CDS
CTTCATGCAAAAGTGAAGAA+AGG 0.545004 tig0019784:-20643 Msa1376080:intron
GCAACCGAGAAGCTCCGTCT+TGG 0.548248 tig0019784:-23930 Msa1376080:CDS
CGAGTGGGAAATGACAAGAT+TGG 0.548954 tig0019784:-19291 Msa1376080:CDS
TCCAAAGGTGGCACTAAACG+GGG 0.550317 tig0019784:-21940 Msa1376080:CDS
GGCACACCGAAGTCGAATGC+TGG 0.551393 tig0019784:-23410 Msa1376080:CDS
TGATCAATTCTATTAATGGA+GGG 0.554166 tig0019784:+18956 None:intergenic
TTGATCAATTCTATTAATGG+AGG 0.555295 tig0019784:+18955 None:intergenic
TGAGCTCATACACATTTCCA+AGG 0.555953 tig0019784:+16489 None:intergenic
CCAGTTGCTGGGGCTTCAGG+AGG 0.557381 tig0019784:+16789 None:intergenic
TGGGTGTGTTTGTTAGTGCA+GGG 0.558497 tig0019784:-15313 Msa1376080:three_prime_UTR
ACTGAGCACTCTTGCTGACA+AGG 0.558738 tig0019784:+16567 None:intergenic
GATCAATTCTATTAATGGAG+GGG 0.558979 tig0019784:+18957 None:intergenic
GCTGAAAGTCAAACTTCTGT+AGG 0.559238 tig0019784:-20909 Msa1376080:CDS
ATCTTCAGGCAACCCAGAGA+TGG 0.559690 tig0019784:+20839 None:intergenic
ATTGATCTCAAATTCCATCA+TGG 0.560644 tig0019784:+18831 None:intergenic
TTAATGTGAACACATTCAAA+GGG 0.560843 tig0019784:+15188 None:intergenic
AGCAAGCTATCCCTGACTGA+TGG 0.560975 tig0019784:+18581 None:intergenic
TACAGATACTAACTGCTTGG+TGG 0.561481 tig0019784:-20531 Msa1376080:intron
AATATGTCCGAAATGCCACT+TGG 0.562170 tig0019784:-18811 Msa1376080:CDS
CAAAGATCTCTGGGCTCTGA+AGG 0.563703 tig0019784:-21779 Msa1376080:CDS
TGCTACGTGTTTCGCAAATG+GGG 0.565409 tig0019784:-19315 Msa1376080:CDS
TTTGTTCCCAGGCCTCCCAA+GGG 0.569125 tig0019784:+19190 None:intergenic
AAAATACTATATAATAAGAG+AGG 0.570059 tig0019784:-24102 Msa1376080:five_prime_UTR
CTTTGCATATTCAGATTCCA+GGG 0.571220 tig0019784:+16215 None:intergenic
GTTTCGCAAATGGGGTCGAG+TGG 0.571251 tig0019784:-19307 Msa1376080:CDS
GTGGGAAATGACAAGATTGG+AGG 0.572154 tig0019784:-19288 Msa1376080:CDS
ACTTACAGATACTAACTGCT+TGG 0.575225 tig0019784:-20534 Msa1376080:intron
ACTATCTCCATCAATTGAAG+TGG 0.576095 tig0019784:-22185 Msa1376080:CDS
GAGAGCGGTGGTGGTAGTAG+TGG 0.577586 tig0019784:-23431 Msa1376080:CDS
ATGGTCACCATCAAAGTCAA+GGG 0.578992 tig0019784:-20264 Msa1376080:CDS
TATTGCCTCCGCCATCATCA+AGG 0.581370 tig0019784:-20938 Msa1376080:CDS
ACTAACTGCTTGGTGGTCAG+TGG 0.581725 tig0019784:-20524 Msa1376080:CDS
CATGGTCACCATCAAAGTCA+AGG 0.582667 tig0019784:-20265 Msa1376080:CDS
ACCGGTGTCATCAAATGTCA+AGG 0.583088 tig0019784:-16160 Msa1376080:CDS
TATAGACATACCGTATGTGT+GGG 0.584053 tig0019784:+18078 None:intergenic
TCCAAGGGGAAGAATCTCCC+AGG 0.585297 tig0019784:+19150 None:intergenic
TCCATCACAAGAAATGAGGA+TGG 0.585328 tig0019784:-15480 Msa1376080:exon
GATGAGAGACTACTCCATCC+AGG 0.585331 tig0019784:+22154 None:intergenic
AGAAATAGTACAATTTCCAA+GGG 0.587610 tig0019784:+19135 None:intergenic
ATGGTGCCAAGCCAAACCCC+TGG 0.590698 tig0019784:+22225 None:intergenic
AGACTATTCAGAAGCAACCT+GGG 0.591957 tig0019784:-19167 Msa1376080:CDS
TCTGGCCACATACTAGAGGA+AGG 0.592429 tig0019784:-20204 Msa1376080:CDS
GCTGATGGAATGATGTTTGG+AGG 0.592452 tig0019784:-21240 Msa1376080:CDS
GTTATTCTGGAGGAATGTAC+CGG 0.592767 tig0019784:-21182 Msa1376080:CDS
TCTACTAAGCCTGATGGTCA+AGG 0.596570 tig0019784:-22250 Msa1376080:CDS
GTAGAATGCTTTCCTTGCGG+AGG 0.597209 tig0019784:+16261 None:intergenic
GGAGTCCTTGATGATGGCGG+AGG 0.598242 tig0019784:+20933 None:intergenic
TCAAAGGCCGCTAAAGTCAA+GGG 0.599366 tig0019784:-21892 Msa1376080:CDS
GCCCCTTACAGAGACAAAGT+TGG 0.599749 tig0019784:-17891 Msa1376080:CDS
AAACCATCACATAGAGAGCA+AGG 0.601001 tig0019784:+21210 None:intergenic
AAGTTGAGATGCGGAAGGCA+AGG 0.601482 tig0019784:-20487 Msa1376080:intron
TGGGAAATGACAAGATTGGA+GGG 0.601675 tig0019784:-19287 Msa1376080:CDS
AACAGAATGCTCCTATGGCA+TGG 0.602372 tig0019784:-17867 Msa1376080:intron
AGGTTCCATCACAAGAAATG+AGG 0.602431 tig0019784:-15484 Msa1376080:exon
AAGCATTCTACTAAAGGACT+GGG 0.602949 tig0019784:-16249 Msa1376080:CDS
GATTGGTGAGGCTTCTAGCA+TGG 0.603400 tig0019784:-20283 Msa1376080:CDS
TCTTCAATATGCACTCAGCA+TGG 0.604013 tig0019784:+23632 None:intergenic
TTTCGCAAATGGGGTCGAGT+GGG 0.606651 tig0019784:-19306 Msa1376080:CDS
ATATAGACATACCGTATGTG+TGG 0.608110 tig0019784:+18077 None:intergenic
ACGTGATCTTGAGAATAGAC+TGG 0.608484 tig0019784:-21812 Msa1376080:CDS
TCAATCGGCGGTCAGTGAGT+TGG 0.609881 tig0019784:-22125 Msa1376080:CDS
CGGAAATGTATCCAGTGCAC+CGG 0.610371 tig0019784:+21163 None:intergenic
GCCTTGACATTTGATGACAC+CGG 0.612387 tig0019784:+16159 None:intergenic
CTCATCTTCTGATCAATCGG+CGG 0.612790 tig0019784:-22137 Msa1376080:CDS
GTCAAATCCCACTAATCTTG+AGG 0.614798 tig0019784:+18221 None:intergenic
AAGCTTAAAACTTACTTGAG+CGG 0.615129 tig0019784:+16098 None:intergenic
AAACGCAAAATTGATGCAGT+AGG 0.615874 tig0019784:-20673 Msa1376080:CDS
CTAAAATCTTCACTGTCATG+AGG 0.616080 tig0019784:+18135 None:intergenic
GTTCAATCCTCCAAATTCGA+TGG 0.617034 tig0019784:-23900 Msa1376080:CDS
TAATATGTGGATGAATGGAA+GGG 0.619233 tig0019784:+18525 None:intergenic
CCTGATGGTCAAGGTGCCAG+GGG 0.620093 tig0019784:-22241 Msa1376080:CDS
AAGTTATGATTACGGGCATG+AGG 0.620971 tig0019784:+23877 None:intergenic
GTAGGAACATTTACTCCACT+CGG 0.621416 tig0019784:+21143 None:intergenic
GAGCTCATACACATTTCCAA+GGG 0.623853 tig0019784:+16490 None:intergenic
CGTGCTGGTTGCAAGCATTG+CGG 0.624498 tig0019784:-23311 Msa1376080:CDS
GATGACACCGGTTTCCCACA+GGG 0.624877 tig0019784:+16171 None:intergenic
AACCATATAGCCAGTTGCTG+GGG 0.625838 tig0019784:+16779 None:intergenic
CAACAATCCTCTTCCAAAGG+TGG 0.628043 tig0019784:-21952 Msa1376080:CDS
ATATGTCCGAAATGCCACTT+GGG 0.628831 tig0019784:-18810 Msa1376080:CDS
AAATACTATATAATAAGAGA+GGG 0.629527 tig0019784:-24101 Msa1376080:five_prime_UTR
CGTGAAATGCTGGATGCCAA+TGG 0.629579 tig0019784:-21721 Msa1376080:CDS
GCGAACCGAAGCGTGCTGAA+GGG 0.632007 tig0019784:-21113 Msa1376080:CDS
GTATGTGGCCAGAATCCTGT+AGG 0.633585 tig0019784:+20214 None:intergenic
GGACTTGTACATAGTCCATG+TGG 0.634227 tig0019784:-15402 Msa1376080:three_prime_UTR
GATGATGTCGTTGTTCCCTG+TGG 0.635856 tig0019784:-16186 Msa1376080:CDS
TCCAGCACTCGACTTAGAGG+CGG 0.639433 tig0019784:+23373 None:intergenic
GAACAGAACACACTTCAACT+CGG 0.639685 tig0019784:+24057 None:intergenic
AGAGGGTGAGCAAAAGTCAA+AGG 0.641322 tig0019784:-21908 Msa1376080:CDS
ACACAACAATCCTCTTCCAA+AGG 0.641848 tig0019784:-21955 Msa1376080:CDS
CAATGCTGATCCATCAGTCA+GGG 0.642435 tig0019784:-18591 Msa1376080:CDS
GAAATGAGGATGGAAACTAA+AGG 0.642815 tig0019784:-15470 Msa1376080:exon
ACCAAAACTTACCATGCCAT+AGG 0.643460 tig0019784:+17856 None:intergenic
TTTGGAAGAGGATTGTTGTG+TGG 0.645988 tig0019784:+21957 None:intergenic
GACTTGTACATAGTCCATGT+GGG 0.646292 tig0019784:-15401 Msa1376080:three_prime_UTR
CTGGCCACATACTAGAGGAA+GGG 0.647983 tig0019784:-20203 Msa1376080:CDS
AGAAAGTACATTGAGAGCGG+TGG 0.649025 tig0019784:-23443 Msa1376080:CDS
GGATTCTGGCCACATACTAG+AGG 0.653815 tig0019784:-20208 Msa1376080:CDS
TTTGTGGGCATTCTTAACCA+AGG 0.654222 tig0019784:-16825 Msa1376080:CDS
TGGTAGTGGTACAAATGTCG+AGG 0.657202 tig0019784:-21998 Msa1376080:CDS
GAAAATACCAATAGTCAGAG+AGG 0.660210 tig0019784:-20370 Msa1376080:CDS
TATATGGATAAACCTCCGCA+AGG 0.661215 tig0019784:-16273 Msa1376080:CDS
CAAAGTTGAAATGATTGGTG+AGG 0.661472 tig0019784:-20295 Msa1376080:CDS
TTAGTAGAATGCTTTCCTTG+CGG 0.662055 tig0019784:+16258 None:intergenic
TTTGCATATTCAGATTCCAG+GGG 0.662095 tig0019784:+16216 None:intergenic
TGGAATCTGAATATGCAAAG+TGG 0.664227 tig0019784:-16212 Msa1376080:CDS
TGGTCACCATCAAAGTCAAG+GGG 0.670459 tig0019784:-20263 Msa1376080:CDS
GAAAACTGGAAACCCTTGGG+AGG 0.670628 tig0019784:-19202 Msa1376080:CDS
GCAGGAGTCCTTGATGATGG+CGG 0.670824 tig0019784:+20930 None:intergenic
TAGACATACCGTATGTGTGG+GGG 0.672350 tig0019784:+18080 None:intergenic
ATGATGTCGTTGTTCCCTGT+GGG 0.672597 tig0019784:-16185 Msa1376080:CDS
GGATGAAGTTGAGATGCGGA+AGG 0.673329 tig0019784:-20492 Msa1376080:CDS
ATAGACATACCGTATGTGTG+GGG 0.680316 tig0019784:+18079 None:intergenic
GTTCCAAGAGACACTTAGCA+TGG 0.680316 tig0019784:+22206 None:intergenic
CCAAAGGTGGCACTAAACGG+GGG 0.682751 tig0019784:-21939 Msa1376080:CDS
ATTAGAAAGTACATTGAGAG+CGG 0.683297 tig0019784:-23446 Msa1376080:CDS
TTAAGGATGAAGTTGAGATG+CGG 0.698261 tig0019784:-20496 Msa1376080:CDS
TGATCTTGAGAATAGACTGG+AGG 0.707817 tig0019784:-21809 Msa1376080:CDS
AGGGAAGTGGAAAATCCCAA+AGG 0.709398 tig0019784:-21094 Msa1376080:CDS
GAAATAGTACAATTTCCAAG+GGG 0.718834 tig0019784:+19136 None:intergenic
GATCTCAAATTCCATCATGG+CGG 0.725809 tig0019784:+18834 None:intergenic
GATTGGAGGGAACAAACTGG+AGG 0.726096 tig0019784:-19274 Msa1376080:CDS
AAATGCTGATGACTCCGGGG+CGG 0.729846 tig0019784:-21836 Msa1376080:CDS
GCACTGGATACATTTCCGAG+TGG 0.746551 tig0019784:-21158 Msa1376080:CDS
GAAGTTACGAGAATCCCACA+TGG 0.753311 tig0019784:+15387 None:intergenic
GAAGTGGAGATATATCACAG+TGG 0.820451 tig0019784:+18157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAGTATTTTGATTTT+AGG + tig0019784:15079-15098 None:intergenic 10.0%
!!! AAAAAGTACTAAAAATATAA+TGG + tig0019784:15484-15503 None:intergenic 10.0%
!!! TTTTTAAATTATTTGTTTGA+CGG - tig0019784:20082-20101 Msa1376080:intron 10.0%
!! TATTATTTAAACAATCTAAT+GGG + tig0019784:23385-23404 None:intergenic 10.0%
!! TTATTATTTAAACAATCTAA+TGG + tig0019784:23386-23405 None:intergenic 10.0%
!!! TTATATACAATTTTTCTTAT+TGG - tig0019784:23540-23559 Msa1376080:intron 10.0%
!!! CTATATGTATTTTTTTTTTT+TGG - tig0019784:23609-23628 Msa1376080:intron 10.0%
!! AAAATACTATATAATAAGAG+AGG - tig0019784:15085-15104 Msa1376080:three_prime_UTR 15.0%
!! AAATACTATATAATAAGAGA+GGG - tig0019784:15086-15105 Msa1376080:three_prime_UTR 15.0%
!!! AATTTTCATACAATTTTATC+TGG + tig0019784:15588-15607 None:intergenic 15.0%
!! AAATTATATCATAGTTAAGA+GGG + tig0019784:16591-16610 None:intergenic 15.0%
!! AAATAAACATATTCTATTGT+TGG + tig0019784:17724-17743 None:intergenic 15.0%
!! ACAATAATAACTATCAAAAT+TGG + tig0019784:17918-17937 None:intergenic 15.0%
!! AAAAAACAGAATTTATACAA+CGG + tig0019784:18375-18394 None:intergenic 15.0%
!!! AATGAAGCATTAATTATTAA+AGG + tig0019784:18404-18423 None:intergenic 15.0%
!!! AAAATAACATTTTCCTAAAT+TGG + tig0019784:18585-18604 None:intergenic 15.0%
!!! ATTCTTAAATATTTTGATCA+TGG - tig0019784:19604-19623 Msa1376080:intron 15.0%
!! AAATAATTGAAGAAGATAAT+GGG - tig0019784:19843-19862 Msa1376080:intron 15.0%
!! AAAATTGATCAAATTAACAA+TGG - tig0019784:21644-21663 Msa1376080:intron 15.0%
!! AATTAACAAATTTCTTTGTT+TGG - tig0019784:21889-21908 Msa1376080:CDS 15.0%
!!! TTATGCTTATTAGTTTATAA+GGG - tig0019784:22753-22772 Msa1376080:intron 15.0%
!!! TGTATTTTTGTTTTATCATT+AGG - tig0019784:23118-23137 Msa1376080:intron 15.0%
!! AAACTTTAATAAAATGAAAG+TGG - tig0019784:23153-23172 Msa1376080:intron 15.0%
!! AACTTTAATAAAATGAAAGT+GGG - tig0019784:23154-23173 Msa1376080:intron 15.0%
!! AAAAAAAAAATACATATAGC+AGG + tig0019784:23608-23627 None:intergenic 15.0%
!! TTAGTAGTAGTATATACTAT+TGG - tig0019784:15051-15070 Msa1376080:three_prime_UTR 20.0%
!! AGAAATGAAATAGAGAAAAA+GGG + tig0019784:15337-15356 None:intergenic 20.0%
!! AAGAAATGAAATAGAGAAAA+AGG + tig0019784:15338-15357 None:intergenic 20.0%
!! TGCAATACATTGATAAAAAT+GGG + tig0019784:15395-15414 None:intergenic 20.0%
!! TTGCAATACATTGATAAAAA+TGG + tig0019784:15396-15415 None:intergenic 20.0%
!!! TGATTTTTTAGACCTATTTT+AGG - tig0019784:15431-15450 Msa1376080:three_prime_UTR 20.0%
!!! GATTTTTTAGACCTATTTTA+GGG - tig0019784:15432-15451 Msa1376080:three_prime_UTR 20.0%
!!! TTTGTTTAATGTTTTCACAA+TGG - tig0019784:15628-15647 Msa1376080:intron 20.0%
!!! AAATGGAAATTTTGATTATC+AGG - tig0019784:16061-16080 Msa1376080:intron 20.0%
!! ATACAAAATGAATATTAGCA+TGG + tig0019784:16356-16375 None:intergenic 20.0%
!! ATTCATAAAACATATCTTTG+AGG + tig0019784:16503-16522 None:intergenic 20.0%
!! GAAATTATATCATAGTTAAG+AGG + tig0019784:16592-16611 None:intergenic 20.0%
!!! TTGAACTAAATGACATTTTA+AGG + tig0019784:16614-16633 None:intergenic 20.0%
!! CAATATGATCATGAAAAATT+AGG + tig0019784:16841-16860 None:intergenic 20.0%
!! CTTTAATCTTTATAAGATGT+TGG + tig0019784:17649-17668 None:intergenic 20.0%
!! AAAAATAAGTCACAATACAT+TGG + tig0019784:18177-18196 None:intergenic 20.0%
!! GCATTAATTATTAAAGGTAA+AGG + tig0019784:18398-18417 None:intergenic 20.0%
!! ACAGAAATAATCAAAGAAAA+AGG + tig0019784:18760-18779 None:intergenic 20.0%
!! ACTAAAAATATTAAGCTGAA+TGG + tig0019784:19094-19113 None:intergenic 20.0%
!!! AATATTTTTAGTTGTTAACC+AGG - tig0019784:19102-19121 Msa1376080:intron 20.0%
!!! ATATTTTTAGTTGTTAACCA+GGG - tig0019784:19103-19122 Msa1376080:intron 20.0%
!!! ATAAAAAGTAGCATACTTTT+AGG + tig0019784:19162-19181 None:intergenic 20.0%
!! CAAATAATTGAAGAAGATAA+TGG - tig0019784:19842-19861 Msa1376080:intron 20.0%
!! ATCTTGATCAATTCTATTAA+TGG + tig0019784:20238-20257 None:intergenic 20.0%
!!! TTAAAACTTTTTACAAGCTA+CGG - tig0019784:20450-20469 Msa1376080:intron 20.0%
!! ATCACATTAATACATGATAT+GGG + tig0019784:20514-20533 None:intergenic 20.0%
!! CTTCTTATAATTATCATCAA+TGG + tig0019784:21008-21027 None:intergenic 20.0%
!!! TTATTTTATTACATCATACG+AGG + tig0019784:21399-21418 None:intergenic 20.0%
!! TTGTATACAATCTTTATCAA+AGG + tig0019784:21563-21582 None:intergenic 20.0%
!! TTGATAAAGATTGTATACAA+AGG - tig0019784:21563-21582 Msa1376080:intron 20.0%
!!! CAAATAACATATAAGTATTG+AGG + tig0019784:21943-21962 None:intergenic 20.0%
!!! TGTTCTAAAGAGAAAATTTT+AGG - tig0019784:22162-22181 Msa1376080:CDS 20.0%
!! TGAAAACATCAACATAAAAA+GGG + tig0019784:22446-22465 None:intergenic 20.0%
!! ATGAAAACATCAACATAAAA+AGG + tig0019784:22447-22466 None:intergenic 20.0%
!! TTTAGATTATAGTATTGCTA+CGG + tig0019784:22486-22505 None:intergenic 20.0%
!! TGAAAACATCAACATAAAAA+GGG + tig0019784:22446-22465 None:intergenic 20.0%
!! ATGAAAACATCAACATAAAA+AGG + tig0019784:22447-22466 None:intergenic 20.0%
!! TTTAGATTATAGTATTGCTA+CGG + tig0019784:22486-22505 None:intergenic 20.0%
!!! GTTATGCTTATTAGTTTATA+AGG - tig0019784:22752-22771 Msa1376080:intron 20.0%
!! TTCCTTTGTAAAATAGTATA+TGG - tig0019784:22898-22917 Msa1376080:intron 20.0%
!!! ATCCATATACTATTTTACAA+AGG + tig0019784:22903-22922 None:intergenic 20.0%
!! AGATATAATTCATCTACTAT+GGG + tig0019784:23494-23513 None:intergenic 20.0%
!! TATAATATAAGAAGCTTCAT+TGG + tig0019784:24048-24067 None:intergenic 20.0%
!!! TTTAAAATGAGTATGTTGTT+GGG + tig0019784:24072-24091 None:intergenic 20.0%
!!! ATTTAAAATGAGTATGTTGT+TGG + tig0019784:24073-24092 None:intergenic 20.0%
!!! TCATTTTAAATAGCATTGAT+AGG - tig0019784:24082-24101 Msa1376080:five_prime_UTR 20.0%
! AAAAGGGAAAGTTATGATTA+CGG + tig0019784:15321-15340 None:intergenic 25.0%
! GCAATACATTGATAAAAATG+GGG + tig0019784:15394-15413 None:intergenic 25.0%
! GTATATATTTGTAACAGATG+TGG - tig0019784:15530-15549 Msa1376080:intron 25.0%
!! TTCATACAATTTTATCTGGT+TGG + tig0019784:15584-15603 None:intergenic 25.0%
! TCAAAAAATTATCAAAGGAG+AGG - tig0019784:15899-15918 Msa1376080:intron 25.0%
! GTATAATGTTGTAATTGCAA+TGG - tig0019784:15944-15963 Msa1376080:intron 25.0%
! TTAAATCATCAATATCGTCA+AGG + tig0019784:16127-16146 None:intergenic 25.0%
! AATGAAACTATTAAGATGCA+TGG - tig0019784:16149-16168 Msa1376080:CDS 25.0%
!! CATTTAGTTCAAAAATGTTC+TGG - tig0019784:16622-16641 Msa1376080:intron 25.0%
! AATAAAAACTGATCTCTGAA+TGG + tig0019784:16790-16809 None:intergenic 25.0%
! AAATTATCCACTTCAATTGA+TGG + tig0019784:17012-17031 None:intergenic 25.0%
! ATGAGTGATTAAATTACCAA+CGG + tig0019784:17528-17547 None:intergenic 25.0%
!!! TATAAGTATAGCCTTATATG+CGG + tig0019784:17583-17602 None:intergenic 25.0%
! AATCTTTATAAGATGTTGGA+AGG + tig0019784:17645-17664 None:intergenic 25.0%
!! ATAAATAAATCATAGCTTGC+AGG + tig0019784:17891-17910 None:intergenic 25.0%
! AGATAATCAGTACCTTAAAA+AGG - tig0019784:18120-18139 Msa1376080:CDS 25.0%
!! TCTTTTTACAGACCTTTTTA+AGG + tig0019784:18135-18154 None:intergenic 25.0%
!! TTTTTGTCTATTGTTTACAG+TGG - tig0019784:18192-18211 Msa1376080:CDS 25.0%
!! TAACATTTTCCTAAATTGGT+CGG + tig0019784:18581-18600 None:intergenic 25.0%
!! TATTTCTGTCAAAACTAACT+TGG - tig0019784:18771-18790 Msa1376080:intron 25.0%
! TCAACTTTGTACATATCAAA+TGG + tig0019784:18881-18900 None:intergenic 25.0%
! ATGTACAAAGTTGAAATGAT+TGG - tig0019784:18887-18906 Msa1376080:intron 25.0%
!! TAGCTTGTAGATTAGTATTT+CGG + tig0019784:19469-19488 None:intergenic 25.0%
!!! AATATTTTGATCATGGAATC+AGG - tig0019784:19611-19630 Msa1376080:intron 25.0%
!!! ATATTTTGATCATGGAATCA+GGG - tig0019784:19612-19631 Msa1376080:intron 25.0%
! TATCTTCTTCAATTATTTGC+AGG + tig0019784:19841-19860 None:intergenic 25.0%
! AGAAATAGTACAATTTCCAA+GGG + tig0019784:20055-20074 None:intergenic 25.0%
! AAGAAATAGTACAATTTCCA+AGG + tig0019784:20056-20075 None:intergenic 25.0%
!! TTTTGAACACTTGATTTTTC+AGG - tig0019784:20147-20166 Msa1376080:CDS 25.0%
! TGATCAATTCTATTAATGGA+GGG + tig0019784:20234-20253 None:intergenic 25.0%
! TTGATCAATTCTATTAATGG+AGG + tig0019784:20235-20254 None:intergenic 25.0%
! CACATTCAAATAAAATGATG+AGG + tig0019784:20299-20318 None:intergenic 25.0%
! AGCAAAAGTAATATCCAAAA+GGG - tig0019784:20406-20425 Msa1376080:intron 25.0%
! CATCACATTAATACATGATA+TGG + tig0019784:20515-20534 None:intergenic 25.0%
! CATTCATCCACATATTATTA+GGG - tig0019784:20668-20687 Msa1376080:CDS 25.0%
!! AAATTAGACTGATGCTTTTA+CGG - tig0019784:20782-20801 Msa1376080:intron 25.0%
! AATAGGAGAATTAGAAAGAA+AGG - tig0019784:21423-21442 Msa1376080:intron 25.0%
!! ATTTTCCTTTGTATACAGAT+TGG + tig0019784:21487-21506 None:intergenic 25.0%
! GAAAAATATCCATGTTTGTA+TGG - tig0019784:21592-21611 Msa1376080:intron 25.0%
!!! AATCGATTTTCACAAATAGA+AGG + tig0019784:21621-21640 None:intergenic 25.0%
!!! AGTAGTGTTTTTGACATAAA+TGG - tig0019784:21845-21864 Msa1376080:CDS 25.0%
!!! ACTTATATGTCATTTTTGCA+TGG - tig0019784:22031-22050 Msa1376080:intron 25.0%
!!! CTTATATGTCATTTTTGCAT+GGG - tig0019784:22032-22051 Msa1376080:intron 25.0%
! AACACTAAATTTCTTCCAAA+TGG - tig0019784:22838-22857 Msa1376080:intron 25.0%
! TACATTCTTTCATATCCATT+TGG + tig0019784:22856-22875 None:intergenic 25.0%
! ATTCTACTGTTATGTTCAAA+AGG - tig0019784:23258-23277 Msa1376080:intron 25.0%
! GATATAATTCATCTACTATG+GGG + tig0019784:23493-23512 None:intergenic 25.0%
! GAGATATAATTCATCTACTA+TGG + tig0019784:23495-23514 None:intergenic 25.0%
! TGAATTATATCTCTGATGAA+AGG - tig0019784:23502-23521 Msa1376080:intron 25.0%
!!! GGCTTTAACTGTTTAAATTT+TGG + tig0019784:23587-23606 None:intergenic 25.0%
! TTAATGTGAACACATTCAAA+GGG + tig0019784:24002-24021 None:intergenic 25.0%
! TTAAAATGAGTATGTTGTTG+GGG + tig0019784:24071-24090 None:intergenic 25.0%
!! ATTGAACCATTTTTCCAAGA+CGG + tig0019784:15274-15293 None:intergenic 30.0%
AAAGGGAAAGTTATGATTAC+GGG + tig0019784:15320-15339 None:intergenic 30.0%
!!! TTAGACCTATTTTAGGGTTT+AGG - tig0019784:15438-15457 Msa1376080:three_prime_UTR 30.0%
TGTAACCTAAACCCTAAAAT+AGG + tig0019784:15446-15465 None:intergenic 30.0%
! ATTAGAAAGTACATTGAGAG+CGG - tig0019784:15741-15760 Msa1376080:intron 30.0%
GCTGGAAAAAATGTTGAATA+TGG - tig0019784:15831-15850 Msa1376080:intron 30.0%
TGCGGTCAAAAAATTATCAA+AGG - tig0019784:15894-15913 Msa1376080:intron 30.0%
AAAATTATCAAAGGAGAGGT+TGG - tig0019784:15903-15922 Msa1376080:intron 30.0%
!! TTCTTTTTGGTGTGAAAATG+AGG - tig0019784:16014-16033 Msa1376080:intron 30.0%
CAGTAACGTGCTAATTAAAA+TGG - tig0019784:16044-16063 Msa1376080:intron 30.0%
AGCAAAAATCTTAGCTATCA+AGG + tig0019784:16228-16247 None:intergenic 30.0%
! TTTTACTCGAATGATGAGTT+AGG + tig0019784:16401-16420 None:intergenic 30.0%
TAACTCATCATTCGAGTAAA+AGG - tig0019784:16400-16419 Msa1376080:intron 30.0%
TGTGGATGTTCATAAATTTC+TGG - tig0019784:16429-16448 Msa1376080:intron 30.0%
!! TTGGTTGAATGATTTTAGAG+TGG + tig0019784:16561-16580 None:intergenic 30.0%
TATATCATAGTTAAGAGGGA+GGG + tig0019784:16587-16606 None:intergenic 30.0%
TTATATCATAGTTAAGAGGG+AGG + tig0019784:16588-16607 None:intergenic 30.0%
TTGATCTATGCATGAGTTAT+TGG - tig0019784:16858-16877 Msa1376080:intron 30.0%
!!! TATGCATGAGTTATTGGTTT+TGG - tig0019784:16864-16883 Msa1376080:intron 30.0%
! TCTATTGTTGGTAAAATCAC+TGG + tig0019784:17712-17731 None:intergenic 30.0%
ACTGATTATCTGTTTCCTTT+GGG + tig0019784:18111-18130 None:intergenic 30.0%
! TACTGATTATCTGTTTCCTT+TGG + tig0019784:18112-18131 None:intergenic 30.0%
AGTGGTTCAAATCTCAAAAA+GGG - tig0019784:18210-18229 Msa1376080:CDS 30.0%
AAGTTTCACTGTTTGATGTT+TGG + tig0019784:18310-18329 None:intergenic 30.0%
AACATCAAACAGTGAAACTT+TGG - tig0019784:18310-18329 Msa1376080:intron 30.0%
ATTTATACAACGGAATCTTC+AGG + tig0019784:18365-18384 None:intergenic 30.0%
AATCATGACAATTCCTCAAA+TGG + tig0019784:18434-18453 None:intergenic 30.0%
TCTAGTATTCATCTTCTGTA+AGG - tig0019784:18471-18490 Msa1376080:intron 30.0%
AAAAAGGAAATATCAGAGAC+TGG + tig0019784:18744-18763 None:intergenic 30.0%
! AATATGTCTGATTTGTCTAC+TGG - tig0019784:19031-19050 Msa1376080:intron 30.0%
ATTTGTCTACTGGTATTAAC+AGG - tig0019784:19041-19060 Msa1376080:intron 30.0%
TTGTAGATTAGTATTTCGGT+TGG + tig0019784:19465-19484 None:intergenic 30.0%
TATCACTAGAACAATTTGGA+TGG - tig0019784:19548-19567 Msa1376080:intron 30.0%
ATCACTAGAACAATTTGGAT+GGG - tig0019784:19549-19568 Msa1376080:intron 30.0%
ATTGTAGCTATTTACTGTGA+TGG - tig0019784:19651-19670 Msa1376080:intron 30.0%
! TACCCTCTAGAAAAAAAACT+AGG - tig0019784:19766-19785 Msa1376080:intron 30.0%
!!! GACCTAGTTTTTTTTCTAGA+GGG + tig0019784:19771-19790 None:intergenic 30.0%
!!! AGACCTAGTTTTTTTTCTAG+AGG + tig0019784:19772-19791 None:intergenic 30.0%
CAAAAGTTAGAAGATGATGA+TGG + tig0019784:19795-19814 None:intergenic 30.0%
GAAATAGTACAATTTCCAAG+GGG + tig0019784:20054-20073 None:intergenic 30.0%
!!! CACTTGATTTTTCAGGATTA+TGG - tig0019784:20154-20173 Msa1376080:CDS 30.0%
ATCAATTCTATTAATGGAGG+GGG + tig0019784:20232-20251 None:intergenic 30.0%
GATCAATTCTATTAATGGAG+GGG + tig0019784:20233-20252 None:intergenic 30.0%
TCTTTAATGTGGAAACATAC+AGG - tig0019784:20260-20279 Msa1376080:CDS 30.0%
ATTGATCTCAAATTCCATCA+TGG + tig0019784:20359-20378 None:intergenic 30.0%
GAGCAAAAGTAATATCCAAA+AGG - tig0019784:20405-20424 Msa1376080:intron 30.0%
! ATTGTGTTAACATACCCTTT+TGG + tig0019784:20423-20442 None:intergenic 30.0%
! AGTCTCTCATTTTCTTTCAT+TGG - tig0019784:20474-20493 Msa1376080:intron 30.0%
TAATATGTGGATGAATGGAA+GGG + tig0019784:20665-20684 None:intergenic 30.0%
ATAATATGTGGATGAATGGA+AGG + tig0019784:20666-20685 None:intergenic 30.0%
CCTAATAATATGTGGATGAA+TGG + tig0019784:20670-20689 None:intergenic 30.0%
CCATTCATCCACATATTATT+AGG - tig0019784:20667-20686 Msa1376080:CDS 30.0%
!! TGAGGATGATTTTAAGTCAA+AGG - tig0019784:20692-20711 Msa1376080:intron 30.0%
TACATCATTTGTATCGTGTT+AGG - tig0019784:20744-20763 Msa1376080:intron 30.0%
TTATGTACTTTAGTCAGTCA+TGG + tig0019784:20825-20844 None:intergenic 30.0%
CTGACTAAAGTACATAACTT+TGG - tig0019784:20828-20847 Msa1376080:intron 30.0%
!!! AATAGTCTTGCTTTTTTGTC+AGG - tig0019784:20907-20926 Msa1376080:CDS 30.0%
! TTTTTGTCAGGTGAAAATGT+TGG - tig0019784:20919-20938 Msa1376080:CDS 30.0%
! GGCTATTTCAATATCTTGAA+GGG + tig0019784:20948-20967 None:intergenic 30.0%
! AGGCTATTTCAATATCTTGA+AGG + tig0019784:20949-20968 None:intergenic 30.0%
ACATACGGTATGTCTATATT+TGG - tig0019784:21114-21133 Msa1376080:CDS 30.0%
TATTTGTGTGCTCATATTTC+TGG - tig0019784:21149-21168 Msa1376080:CDS 30.0%
!!! GTTTTTTCACTTGAAAGAGA+AGG - tig0019784:21257-21276 Msa1376080:intron 30.0%
ATAAGTCAAGATGACTCATT+TGG + tig0019784:21533-21552 None:intergenic 30.0%
TATACCATGCTGAATTAATG+CGG + tig0019784:21784-21803 None:intergenic 30.0%
ATATTGGAAGAATTTCACGA+GGG + tig0019784:22097-22116 None:intergenic 30.0%
TATATTGGAAGAATTTCACG+AGG + tig0019784:22098-22117 None:intergenic 30.0%
TATGGAGTGATCAGATATAT+TGG + tig0019784:22113-22132 None:intergenic 30.0%
AATATATCTGATCACTCCAT+AGG - tig0019784:22112-22131 Msa1376080:CDS 30.0%
ATATATCTGATCACTCCATA+GGG - tig0019784:22113-22132 Msa1376080:CDS 30.0%
TTAACAAAAAACCCAGTTTC+TGG - tig0019784:22206-22225 Msa1376080:CDS 30.0%
TAACAAAAAACCCAGTTTCT+GGG - tig0019784:22207-22226 Msa1376080:CDS 30.0%
GTGAATTACAATAACTAGGA+TGG - tig0019784:22230-22249 Msa1376080:CDS 30.0%
ATTATAGTATTGCTACGGAA+AGG + tig0019784:22481-22500 None:intergenic 30.0%
ATTATAGTATTGCTACGGAA+AGG + tig0019784:22481-22500 None:intergenic 30.0%
ACTGATAAGAAAAATCCTGT+TGG - tig0019784:22651-22670 Msa1376080:intron 30.0%
! TATTAGTTTATAAGGGCATG+TGG - tig0019784:22760-22779 Msa1376080:intron 30.0%
AAGCTTAAAACTTACTTGAG+CGG + tig0019784:23092-23111 None:intergenic 30.0%
! AACCAAACTATAGTCGATTT+CGG + tig0019784:23303-23322 None:intergenic 30.0%
TAAACTGCAATTCTTGTTGA+AGG - tig0019784:23678-23697 Msa1376080:intron 30.0%
!!! TACGAAGTAGTTTTTTGACA+AGG - tig0019784:23764-23783 Msa1376080:intron 30.0%
!!! AGATCTTTCACCTCTTTTTT+TGG - tig0019784:23854-23873 Msa1376080:intron 30.0%
!!! GATCTTTCACCTCTTTTTTT+GGG - tig0019784:23855-23874 Msa1376080:intron 30.0%
CTTAATGTGAACACATTCAA+AGG + tig0019784:24003-24022 None:intergenic 30.0%
!!! CTTCATTGGTGTTTTTTAGA+AGG + tig0019784:24034-24053 None:intergenic 30.0%
!! CTTTTTCACTTCTTTGTTTG+AGG - tig0019784:24106-24125 Msa1376080:five_prime_UTR 30.0%
CTATATAATAAGAGAGGGTG+AGG - tig0019784:15091-15110 Msa1376080:three_prime_UTR 35.0%
! GACCTGATGAACTTTCTTTT+TGG - tig0019784:16001-16020 Msa1376080:intron 35.0%
CACCAAAAAGAAAGTTCATC+AGG + tig0019784:16006-16025 None:intergenic 35.0%
ATCAAAGATTTAACACGCGA+TGG + tig0019784:16283-16302 None:intergenic 35.0%
! TCGAGTAAAAGGAAGTTTTG+TGG - tig0019784:16411-16430 Msa1376080:intron 35.0%
GAATTAGTGAATAGTCAGTG+AGG + tig0019784:16899-16918 None:intergenic 35.0%
ACTATCTCCATCAATTGAAG+TGG - tig0019784:17002-17021 Msa1376080:intron 35.0%
! ATTGAAGTGGATAATTTGCC+TGG - tig0019784:17015-17034 Msa1376080:intron 35.0%
TCTCTCATCTTCTGATCAAT+CGG - tig0019784:17047-17066 Msa1376080:intron 35.0%
AAAGACCATCCTACAAAAAG+AGG - tig0019784:17090-17109 Msa1376080:intron 35.0%
! TTTCTCACCATTTTCCTTTC+AGG - tig0019784:17166-17185 Msa1376080:intron 35.0%
AGAAAGGGACAGTAACATAA+TGG + tig0019784:17680-17699 None:intergenic 35.0%
AAGAAAATCTAGCATGTCCA+TGG - tig0019784:17800-17819 Msa1376080:intron 35.0%
! TATTGTCATTTCAGTGCTGA+TGG - tig0019784:17932-17951 Msa1376080:CDS 35.0%
CAGTGGTTCAAATCTCAAAA+AGG - tig0019784:18209-18228 Msa1376080:CDS 35.0%
AAAAAGGGAAGAAACCAACT+AGG - tig0019784:18225-18244 Msa1376080:CDS 35.0%
ACAATTCCTCAAATGGTTTG+GGG + tig0019784:18427-18446 None:intergenic 35.0%
GACAATTCCTCAAATGGTTT+GGG + tig0019784:18428-18447 None:intergenic 35.0%
TGACAATTCCTCAAATGGTT+TGG + tig0019784:18429-18448 None:intergenic 35.0%
AAACGCAAAATTGATGCAGT+AGG - tig0019784:18514-18533 Msa1376080:CDS 35.0%
CTTCATGCAAAAGTGAAGAA+AGG - tig0019784:18544-18563 Msa1376080:CDS 35.0%
ACTTACAGATACTAACTGCT+TGG - tig0019784:18653-18672 Msa1376080:intron 35.0%
TTAAGGATGAAGTTGAGATG+CGG - tig0019784:18691-18710 Msa1376080:intron 35.0%
GAAAATACCAATAGTCAGAG+AGG - tig0019784:18817-18836 Msa1376080:CDS 35.0%
AAATAGTCCTCTCTGACTAT+TGG + tig0019784:18827-18846 None:intergenic 35.0%
AATAGTCAGAGAGGACTATT+TGG - tig0019784:18826-18845 Msa1376080:CDS 35.0%
CAAAGTTGAAATGATTGGTG+AGG - tig0019784:18892-18911 Msa1376080:intron 35.0%
GAATGGTGAAAAAGAGAAGA+TGG + tig0019784:19077-19096 None:intergenic 35.0%
!! TCATTGACTTTCTCTCCAAT+TGG + tig0019784:19286-19305 None:intergenic 35.0%
TTGGAGAGAAAGTCAATGAA+AGG - tig0019784:19287-19306 Msa1376080:CDS 35.0%
TGGAGAGAAAGTCAATGAAA+GGG - tig0019784:19288-19307 Msa1376080:CDS 35.0%
GTACATGAAACTATCTGTAG+AGG - tig0019784:19381-19400 Msa1376080:intron 35.0%
! TTCTAGTGATAGTGCAGTTT+CGG + tig0019784:19539-19558 None:intergenic 35.0%
GCACTATCACTAGAACAATT+TGG - tig0019784:19544-19563 Msa1376080:intron 35.0%
! TTTACTGTGATGGTGACTAA+TGG - tig0019784:19661-19680 Msa1376080:intron 35.0%
! TTACTGTGATGGTGACTAAT+GGG - tig0019784:19662-19681 Msa1376080:intron 35.0%
GTGATGCAACAGAAATCAAT+GGG + tig0019784:19722-19741 None:intergenic 35.0%
AGTGATGCAACAGAAATCAA+TGG + tig0019784:19723-19742 None:intergenic 35.0%
! AGGATGTAGTAGCTTTACAT+GGG + tig0019784:19821-19840 None:intergenic 35.0%
! CGACTATTCTTTGAGAAAAC+TGG - tig0019784:19971-19990 Msa1376080:intron 35.0%
GATCAAGATGCTCTTTAATG+TGG - tig0019784:20249-20268 Msa1376080:CDS 35.0%
CTGTTAATGCTTCAAAACCT+GGG + tig0019784:20551-20570 None:intergenic 35.0%
TCTGTTAATGCTTCAAAACC+TGG + tig0019784:20552-20571 None:intergenic 35.0%
TCCACATATTATTAGGGATG+AGG - tig0019784:20674-20693 Msa1376080:CDS 35.0%
TCCTCATCCCTAATAATATG+TGG + tig0019784:20678-20697 None:intergenic 35.0%
ACTCAAATGCATAAAACCAC+AGG + tig0019784:20866-20885 None:intergenic 35.0%
TGAAATAGCCTCAAGATTAG+TGG - tig0019784:20958-20977 Msa1376080:CDS 35.0%
GAAATAGCCTCAAGATTAGT+GGG - tig0019784:20959-20978 Msa1376080:CDS 35.0%
CTAAAATCTTCACTGTCATG+AGG + tig0019784:21055-21074 None:intergenic 35.0%
TATAGACATACCGTATGTGT+GGG + tig0019784:21112-21131 None:intergenic 35.0%
ATATAGACATACCGTATGTG+TGG + tig0019784:21113-21132 None:intergenic 35.0%
TATTTGTAATCCGTCTACAC+AGG - tig0019784:21211-21230 Msa1376080:CDS 35.0%
! TACAGATTGGAAGGTTCTAA+AGG + tig0019784:21474-21493 None:intergenic 35.0%
ACCTTCCAATCTGTATACAA+AGG - tig0019784:21479-21498 Msa1376080:intron 35.0%
TCCTTTGTATACAGATTGGA+AGG + tig0019784:21483-21502 None:intergenic 35.0%
!! ACTCATTTGGTCTTTTCATG+TGG + tig0019784:21520-21539 None:intergenic 35.0%
AGAAGGATACCATACAAACA+TGG + tig0019784:21604-21623 None:intergenic 35.0%
ATACCATGCTGAATTAATGC+GGG + tig0019784:21783-21802 None:intergenic 35.0%
GCATTAATTCAGCATGGTAT+AGG - tig0019784:21783-21802 Msa1376080:CDS 35.0%
!!! TTTTCTCTTTAGAACACCTC+TGG + tig0019784:22158-22177 None:intergenic 35.0%
AACAAAAAACCCAGTTTCTG+GGG - tig0019784:22208-22227 Msa1376080:CDS 35.0%
TGGGGTGAATTACAATAACT+AGG - tig0019784:22226-22245 Msa1376080:CDS 35.0%
! AATATCTTTTGCCTGCAGTT+TGG - tig0019784:22576-22595 Msa1376080:intron 35.0%
!! CTTAAAAGCATTAGACCAAC+AGG + tig0019784:22669-22688 None:intergenic 35.0%
GTATGAGCTCAAAAAAGCTA+AGG - tig0019784:22710-22729 Msa1376080:intron 35.0%
TCAAAAAAGCTAAGGTCAGT+TGG - tig0019784:22718-22737 Msa1376080:intron 35.0%
TTAGTAGAATGCTTTCCTTG+CGG + tig0019784:22932-22951 None:intergenic 35.0%
!! CAAGGAAAGCATTCTACTAA+AGG - tig0019784:22932-22951 Msa1376080:intron 35.0%
! AAAGCATTCTACTAAAGGAC+TGG - tig0019784:22937-22956 Msa1376080:intron 35.0%
AAGCATTCTACTAAAGGACT+GGG - tig0019784:22938-22957 Msa1376080:intron 35.0%
TTTGCATATTCAGATTCCAG+GGG + tig0019784:22974-22993 None:intergenic 35.0%
CTTTGCATATTCAGATTCCA+GGG + tig0019784:22975-22994 None:intergenic 35.0%
ACTTTGCATATTCAGATTCC+AGG + tig0019784:22976-22995 None:intergenic 35.0%
TGGAATCTGAATATGCAAAG+TGG - tig0019784:22975-22994 Msa1376080:intron 35.0%
TACAAGCAAACATGCTAACA+TGG - tig0019784:23445-23464 Msa1376080:CDS 35.0%
! TGAATGTAAACCTTTTGTGC+AGG - tig0019784:23654-23673 Msa1376080:intron 35.0%
GAAATGAGGATGGAAACTAA+AGG - tig0019784:23717-23736 Msa1376080:intron 35.0%
!!! AAACTAAAGGTGTGCTGTTT+TGG - tig0019784:23730-23749 Msa1376080:intron 35.0%
!!! AACTAAAGGTGTGCTGTTTT+GGG - tig0019784:23731-23750 Msa1376080:intron 35.0%
ACAAACACACCCAAAAAAAG+AGG + tig0019784:23867-23886 None:intergenic 35.0%
GAACAGAACACACTTCAACT+CGG + tig0019784:15133-15152 None:intergenic 40.0%
AAAGCAGAGTACGCAAAATC+AGG - tig0019784:15200-15219 Msa1376080:three_prime_UTR 40.0%
GTTCAATCCTCCAAATTCGA+TGG - tig0019784:15287-15306 Msa1376080:three_prime_UTR 40.0%
AAGTTATGATTACGGGCATG+AGG + tig0019784:15313-15332 None:intergenic 40.0%
TCTTCAATATGCACTCAGCA+TGG + tig0019784:15558-15577 None:intergenic 40.0%
TTTGAACCAGCATTCGACTT+CGG + tig0019784:15786-15805 None:intergenic 40.0%
! AGCGTGTGTGTCTTGTTAAT+TGG - tig0019784:15979-15998 Msa1376080:intron 40.0%
! AGGCTATCTAGAGAGGATTT+TGG + tig0019784:16381-16400 None:intergenic 40.0%
ATGAGTTAGGCTATCTAGAG+AGG + tig0019784:16388-16407 None:intergenic 40.0%
! AAGTGGATAATTTGCCTGGA+TGG - tig0019784:17019-17038 Msa1376080:intron 40.0%
! TACCTCCTCTTTTTGTAGGA+TGG + tig0019784:17098-17117 None:intergenic 40.0%
TCCTACAAAAAGAGGAGGTA+TGG - tig0019784:17098-17117 Msa1376080:intron 40.0%
! ACCATACCTCCTCTTTTTGT+AGG + tig0019784:17102-17121 None:intergenic 40.0%
GTGAATGATATGCTGCAGAA+CGG - tig0019784:17120-17139 Msa1376080:intron 40.0%
ACTACCACCTGAAAGGAAAA+TGG + tig0019784:17176-17195 None:intergenic 40.0%
!! ATTTTCCTTTCAGGTGGTAG+TGG - tig0019784:17175-17194 Msa1376080:intron 40.0%
TTTGGAAGAGGATTGTTGTG+TGG + tig0019784:17233-17252 None:intergenic 40.0%
ACACAACAATCCTCTTCCAA+AGG - tig0019784:17232-17251 Msa1376080:intron 40.0%
GTGAAAAATGCTGATGACTC+CGG - tig0019784:17346-17365 Msa1376080:intron 40.0%
TGAAAAATGCTGATGACTCC+GGG - tig0019784:17347-17366 Msa1376080:intron 40.0%
ACGTGATCTTGAGAATAGAC+TGG - tig0019784:17375-17394 Msa1376080:intron 40.0%
TGATCTTGAGAATAGACTGG+AGG - tig0019784:17378-17397 Msa1376080:intron 40.0%
TCCTGTTGAATCTTGACCAT+TGG + tig0019784:17485-17504 None:intergenic 40.0%
CACTGGCATCTTAGTAGAAA+GGG + tig0019784:17695-17714 None:intergenic 40.0%
TCACTGGCATCTTAGTAGAA+AGG + tig0019784:17696-17715 None:intergenic 40.0%
CAAAGAAAGCAGAATGGATC+TGG + tig0019784:17847-17866 None:intergenic 40.0%
CCATCACAAAGAAAGCAGAA+TGG + tig0019784:17853-17872 None:intergenic 40.0%
CCATTCTGCTTTCTTTGTGA+TGG - tig0019784:17850-17869 Msa1376080:intron 40.0%
!! AGTGCTGATGGAATGATGTT+TGG - tig0019784:17944-17963 Msa1376080:CDS 40.0%
AAACCATCACATAGAGAGCA+AGG + tig0019784:17980-17999 None:intergenic 40.0%
! GATGGTTTTCTGCGTTATTC+TGG - tig0019784:17992-18011 Msa1376080:intron 40.0%
! GTTATTCTGGAGGAATGTAC+CGG - tig0019784:18005-18024 Msa1376080:intron 40.0%
GTAGGAACATTTACTCCACT+CGG + tig0019784:18047-18066 None:intergenic 40.0%
! ACAGAAGTTTGACTTTCAGC+AGG + tig0019784:18278-18297 None:intergenic 40.0%
GCTGAAAGTCAAACTTCTGT+AGG - tig0019784:18278-18297 Msa1376080:intron 40.0%
ATTTGAGAGTTGCCATCTCT+GGG - tig0019784:18336-18355 Msa1376080:intron 40.0%
TTCATTCCCCAAACCATTTG+AGG - tig0019784:18418-18437 Msa1376080:intron 40.0%
!! CTTCTGTAAGGTGCTTTTAC+AGG - tig0019784:18483-18502 Msa1376080:intron 40.0%
! CATTTTCCTAAATTGGTCGG+TGG + tig0019784:18578-18597 None:intergenic 40.0%
TACAGATACTAACTGCTTGG+TGG - tig0019784:18656-18675 Msa1376080:intron 40.0%
CTTGGAAGAGTTTGATCTGT+AGG - tig0019784:18789-18808 Msa1376080:CDS 40.0%
GGACTATTTGGTTGACTGTA+TGG - tig0019784:18838-18857 Msa1376080:CDS 40.0%
ATGGTCACCATCAAAGTCAA+GGG - tig0019784:18923-18942 Msa1376080:intron 40.0%
! TTTTCCCTTCCTCTAGTATG+TGG + tig0019784:18991-19010 None:intergenic 40.0%
GTCTACTGGTATTAACAGGT+TGG - tig0019784:19045-19064 Msa1376080:intron 40.0%
AATCACAAACTGCTATTCCC+TGG + tig0019784:19123-19142 None:intergenic 40.0%
GGAGAGAAAGTCAATGAAAG+GGG - tig0019784:19289-19308 Msa1376080:CDS 40.0%
GAGAGAAAGTCAATGAAAGG+GGG - tig0019784:19290-19309 Msa1376080:CDS 40.0%
TTGTTACGCAGCAGTTAGTT+AGG + tig0019784:19421-19440 None:intergenic 40.0%
! CAGGATGTAGTAGCTTTACA+TGG + tig0019784:19822-19841 None:intergenic 40.0%
ATTGCTACGTGTTTCGCAAA+TGG - tig0019784:19870-19889 Msa1376080:intron 40.0%
TTGCTACGTGTTTCGCAAAT+GGG - tig0019784:19871-19890 Msa1376080:intron 40.0%
TGGGAAATGACAAGATTGGA+GGG - tig0019784:19900-19919 Msa1376080:intron 40.0%
TGTCGAAATCTGATGCAATC+AGG - tig0019784:19939-19958 Msa1376080:intron 40.0%
GTCGAAATCTGATGCAATCA+GGG - tig0019784:19940-19959 Msa1376080:intron 40.0%
TTGAGAAAACTGGAAACCCT+TGG - tig0019784:19981-20000 Msa1376080:intron 40.0%
TGAGAAAACTGGAAACCCTT+GGG - tig0019784:19982-20001 Msa1376080:intron 40.0%
! CTGAATAGTCTTTTGTTCCC+AGG + tig0019784:20011-20030 None:intergenic 40.0%
AAGACTATTCAGAAGCAACC+TGG - tig0019784:20019-20038 Msa1376080:intron 40.0%
AGACTATTCAGAAGCAACCT+GGG - tig0019784:20020-20039 Msa1376080:intron 40.0%
GGATATCATTTCCACACATC+AGG - tig0019784:20103-20122 Msa1376080:intron 40.0%
GATCTCAAATTCCATCATGG+CGG + tig0019784:20356-20375 None:intergenic 40.0%
AATATGTCCGAAATGCCACT+TGG - tig0019784:20376-20395 Msa1376080:CDS 40.0%
! ATATGTCCGAAATGCCACTT+GGG - tig0019784:20377-20396 Msa1376080:CDS 40.0%
TGCTCATTGATGCTAGCAAT+AGG - tig0019784:20625-20644 Msa1376080:intron 40.0%
AAGTACATAACTTTGGACCG+TGG - tig0019784:20835-20854 Msa1376080:CDS 40.0%
TAAAACCACAGGCAAAACCA+CGG + tig0019784:20855-20874 None:intergenic 40.0%
GTCAAATCCCACTAATCTTG+AGG + tig0019784:20969-20988 None:intergenic 40.0%
GAAGTGGAGATATATCACAG+TGG + tig0019784:21033-21052 None:intergenic 40.0%
ATAGACATACCGTATGTGTG+GGG + tig0019784:21111-21130 None:intergenic 40.0%
TGCCAACTTTGTCTCTGTAA+GGG + tig0019784:21301-21320 None:intergenic 40.0%
TTGCCAACTTTGTCTCTGTA+AGG + tig0019784:21302-21321 None:intergenic 40.0%
! TCCTATGGCATGGTAAGTTT+TGG - tig0019784:21330-21349 Msa1376080:intron 40.0%
ACCAAAACTTACCATGCCAT+AGG + tig0019784:21334-21353 None:intergenic 40.0%
GACAAGCGAATGTGCTTAAA+CGG - tig0019784:21696-21715 Msa1376080:CDS 40.0%
ACAAGCGAATGTGCTTAAAC+GGG - tig0019784:21697-21716 Msa1376080:CDS 40.0%
GGGACATTTACAGGTTGTTA+AGG + tig0019784:22077-22096 None:intergenic 40.0%
ATTTCACGAGGGACATTTAC+AGG + tig0019784:22086-22105 None:intergenic 40.0%
GTAGTATCTTACCATCCCTA+TGG + tig0019784:22131-22150 None:intergenic 40.0%
GTAAGATACTACTAGACCAG+AGG - tig0019784:22139-22158 Msa1376080:CDS 40.0%
TGTAATTCACCCCAGAAACT+GGG + tig0019784:22220-22239 None:intergenic 40.0%
TTGTAATTCACCCCAGAAAC+TGG + tig0019784:22221-22240 None:intergenic 40.0%
TAACTAGGATGGATATTCCG+TGG - tig0019784:22241-22260 Msa1376080:CDS 40.0%
ACGACAATGTTCTCTACTTC+AGG - tig0019784:22323-22342 Msa1376080:intron 40.0%
! TGTTCTCTACTTCAGGTTCT+AGG - tig0019784:22330-22349 Msa1376080:intron 40.0%
! TTCTAGGTTGACGAACTTTG+TGG - tig0019784:22346-22365 Msa1376080:intron 40.0%
! TCTAGGTTGACGAACTTTGT+GGG - tig0019784:22347-22366 Msa1376080:intron 40.0%
TTTGTGGGCATTCTTAACCA+AGG - tig0019784:22362-22381 Msa1376080:intron 40.0%
!! CTTTTAAGTGAAGTTGCCCT+TGG - tig0019784:22681-22700 Msa1376080:intron 40.0%
GAGCTCATACACATTTCCAA+GGG + tig0019784:22700-22719 None:intergenic 40.0%
TGAGCTCATACACATTTCCA+AGG + tig0019784:22701-22720 None:intergenic 40.0%
TATATGGATAAACCTCCGCA+AGG - tig0019784:22914-22933 Msa1376080:intron 40.0%
GTGGGAAAATTTCTACTACC+TGG - tig0019784:23172-23191 Msa1376080:intron 40.0%
AGCCGAAATCGACTATAGTT+TGG - tig0019784:23298-23317 Msa1376080:CDS 40.0%
AAGCAAACATGCTAACATGG+AGG - tig0019784:23448-23467 Msa1376080:CDS 40.0%
TGCAGTTTAACCTGCACAAA+AGG + tig0019784:23667-23686 None:intergenic 40.0%
TGCAATTCTTGTTGAAGGTG+AGG - tig0019784:23683-23702 Msa1376080:intron 40.0%
AGGTTCCATCACAAGAAATG+AGG - tig0019784:23703-23722 Msa1376080:intron 40.0%
TCCATCACAAGAAATGAGGA+TGG - tig0019784:23707-23726 Msa1376080:intron 40.0%
TCCATCCTCATTTCTTGTGA+TGG + tig0019784:23711-23730 None:intergenic 40.0%
!!! ACTAAAGGTGTGCTGTTTTG+GGG - tig0019784:23732-23751 Msa1376080:intron 40.0%
GACTTGTACATAGTCCATGT+GGG - tig0019784:23786-23805 Msa1376080:intron 40.0%
TCTCGTAACTTCTCGTGATA+AGG - tig0019784:23811-23830 Msa1376080:intron 40.0%
!!! AGGTCTCATTTTGAGTTGAC+TGG - tig0019784:23831-23850 Msa1376080:intron 40.0%
TTTGCGTACTCTGCTTTCCA+TGG + tig0019784:15197-15216 None:intergenic 45.0%
! TTTTCCAAGACGGAGCTTCT+CGG + tig0019784:15264-15283 None:intergenic 45.0%
GAAGCTCCGTCTTGGAAAAA+TGG - tig0019784:15265-15284 Msa1376080:three_prime_UTR 45.0%
AGAACTTAGAGTCGCTTCGT+TGG - tig0019784:15703-15722 Msa1376080:intron 45.0%
GAACTTAGAGTCGCTTCGTT+GGG - tig0019784:15704-15723 Msa1376080:intron 45.0%
! AGAAAGTACATTGAGAGCGG+TGG - tig0019784:15744-15763 Msa1376080:intron 45.0%
! TTTTCCAGCACTCGACTTAG+AGG + tig0019784:15820-15839 None:intergenic 45.0%
TTGATCACGTCCTGTCATTC+AGG - tig0019784:16298-16317 Msa1376080:intron 45.0%
CGATTCTAGTCCTGAATGAC+AGG + tig0019784:16311-16330 None:intergenic 45.0%
TAGTTAAGAGGGAGGGAAGT+TGG + tig0019784:16580-16599 None:intergenic 45.0%
CGCATATCTACTAAGCCTGA+TGG - tig0019784:16931-16950 Msa1376080:intron 45.0%
TCTACTAAGCCTGATGGTCA+AGG - tig0019784:16937-16956 Msa1376080:intron 45.0%
GTTCCAAGAGACACTTAGCA+TGG + tig0019784:16984-17003 None:intergenic 45.0%
CTCATCTTCTGATCAATCGG+CGG - tig0019784:17050-17069 Msa1376080:intron 45.0%
GACCATCCTACAAAAAGAGG+AGG - tig0019784:17093-17112 Msa1376080:intron 45.0%
! CTCACCATTTTCCTTTCAGG+TGG - tig0019784:17169-17188 Msa1376080:intron 45.0%
TTGTACCACTACCACCTGAA+AGG + tig0019784:17183-17202 None:intergenic 45.0%
!! TGGTAGTGGTACAAATGTCG+AGG - tig0019784:17189-17208 Msa1376080:intron 45.0%
CAACAATCCTCTTCCAAAGG+TGG - tig0019784:17235-17254 Msa1376080:intron 45.0%
! TTTAGTGCCACCTTTGGAAG+AGG + tig0019784:17245-17264 None:intergenic 45.0%
CTTCCAAAGGTGGCACTAAA+CGG - tig0019784:17245-17264 Msa1376080:intron 45.0%
TTCCAAAGGTGGCACTAAAC+GGG - tig0019784:17246-17265 Msa1376080:intron 45.0%
AGAGGGTGAGCAAAAGTCAA+AGG - tig0019784:17279-17298 Msa1376080:intron 45.0%
TCAAAGGCCGCTAAAGTCAA+GGG - tig0019784:17295-17314 Msa1376080:intron 45.0%
CACATCTCCCTTGACTTTAG+CGG + tig0019784:17305-17324 None:intergenic 45.0%
GAAAAATGCTGATGACTCCG+GGG - tig0019784:17348-17367 Msa1376080:intron 45.0%
GCCAATGGTCAAGATTCAAC+AGG - tig0019784:17481-17500 Msa1376080:intron 45.0%
ATATGCGGCAGAGCTTCTTA+AGG + tig0019784:17568-17587 None:intergenic 45.0%
AAGAAGCTCTGCCGCATATA+AGG - tig0019784:17569-17588 Msa1376080:intron 45.0%
ATCTAGCATGTCCATGGTTG+TGG - tig0019784:17806-17825 Msa1376080:intron 45.0%
TATGACCTCATCCACAACCA+TGG + tig0019784:17820-17839 None:intergenic 45.0%
GCTGATGGAATGATGTTTGG+AGG - tig0019784:17947-17966 Msa1376080:CDS 45.0%
AGTCCTTGCTCTCTATGTGA+TGG - tig0019784:17974-17993 Msa1376080:intron 45.0%
! GGTTTTCTGCGTTATTCTGG+AGG - tig0019784:17995-18014 Msa1376080:intron 45.0%
AGGGAAGTGGAAAATCCCAA+AGG - tig0019784:18093-18112 Msa1376080:CDS 45.0%
GATTTGAGAGTTGCCATCTC+TGG - tig0019784:18335-18354 Msa1376080:intron 45.0%
!! CTGTAAGGTGCTTTTACAGG+TGG - tig0019784:18486-18505 Msa1376080:intron 45.0%
! AGGTGCTTTTACAGGTGGAA+TGG - tig0019784:18491-18510 Msa1376080:intron 45.0%
CGCAAAATTGATGCAGTAGG+TGG - tig0019784:18517-18536 Msa1376080:CDS 45.0%
CATGGTCACCATCAAAGTCA+AGG - tig0019784:18922-18941 Msa1376080:intron 45.0%
TGGTCACCATCAAAGTCAAG+GGG - tig0019784:18924-18943 Msa1376080:intron 45.0%
ACTTTGCCCCTTGACTTTGA+TGG + tig0019784:18933-18952 None:intergenic 45.0%
! AGTGCTGTTCATGATGCTTC+TGG - tig0019784:18950-18969 Msa1376080:CDS 45.0%
CAGTGATCGTCATCTTCAGA+AGG + tig0019784:19263-19282 None:intergenic 45.0%
AGATGACGATCACTGCCAAT+TGG - tig0019784:19268-19287 Msa1376080:CDS 45.0%
AAAGTCAATGAAAGGGGGAC+AGG - tig0019784:19295-19314 Msa1376080:CDS 45.0%
TAGTGCAGTTTCGGTTGTAG+TGG + tig0019784:19530-19549 None:intergenic 45.0%
TGCTACGTGTTTCGCAAATG+GGG - tig0019784:19872-19891 Msa1376080:intron 45.0%
CGAGTGGGAAATGACAAGAT+TGG - tig0019784:19896-19915 Msa1376080:intron 45.0%
GTGGGAAATGACAAGATTGG+AGG - tig0019784:19899-19918 Msa1376080:intron 45.0%
CAAGATTGGAGGGAACAAAC+TGG - tig0019784:19910-19929 Msa1376080:intron 45.0%
CTGAATATCGACCTGATGTG+TGG + tig0019784:20117-20136 None:intergenic 45.0%
! GTTTTGTAGATCCGCCATGA+TGG - tig0019784:20342-20361 Msa1376080:CDS 45.0%
CAGTTTCCCAAGTGGCATTT+CGG + tig0019784:20386-20405 None:intergenic 45.0%
! CTTTTGCTCAGTTTCCCAAG+TGG + tig0019784:20394-20413 None:intergenic 45.0%
ATGCTTCAAAACCTGGGATG+AGG + tig0019784:20545-20564 None:intergenic 45.0%
CAATGCTGATCCATCAGTCA+GGG - tig0019784:20596-20615 Msa1376080:intron 45.0%
ATCAATGGAGTCGTCGTTGT+TGG + tig0019784:20993-21012 None:intergenic 45.0%
TCTTCACTGTCATGAGGAAG+TGG + tig0019784:21049-21068 None:intergenic 45.0%
TAGACATACCGTATGTGTGG+GGG + tig0019784:21110-21129 None:intergenic 45.0%
GCCAACTTTGTCTCTGTAAG+GGG + tig0019784:21300-21319 None:intergenic 45.0%
TTGGCAACAGAATGCTCCTA+TGG - tig0019784:21315-21334 Msa1376080:intron 45.0%
AACAGAATGCTCCTATGGCA+TGG - tig0019784:21320-21339 Msa1376080:intron 45.0%
TGACCCGCATTAATTCAGCA+TGG - tig0019784:21777-21796 Msa1376080:CDS 45.0%
ATCTGATCACTCCATAGGGA+TGG - tig0019784:22117-22136 Msa1376080:CDS 45.0%
CTGTAGTATGCACGTTACCA+CGG + tig0019784:22261-22280 None:intergenic 45.0%
AACCATATAGCCAGTTGCTG+GGG + tig0019784:22411-22430 None:intergenic 45.0%
GAACCATATAGCCAGTTGCT+GGG + tig0019784:22412-22431 None:intergenic 45.0%
AGAACCATATAGCCAGTTGC+TGG + tig0019784:22413-22432 None:intergenic 45.0%
! TTTTGCCTGCAGTTTGGCAA+AGG - tig0019784:22582-22601 Msa1376080:intron 45.0%
TTTGCCTGCAGTTTGGCAAA+GGG - tig0019784:22583-22602 Msa1376080:intron 45.0%
AAATCCCTTTGCCAAACTGC+AGG + tig0019784:22590-22609 None:intergenic 45.0%
ATGATGTCGTTGTTCCCTGT+GGG - tig0019784:23002-23021 Msa1376080:intron 45.0%
!! ACCGGTGTCATCAAATGTCA+AGG - tig0019784:23027-23046 Msa1376080:intron 45.0%
! GCCTTGACATTTGATGACAC+CGG + tig0019784:23031-23050 None:intergenic 45.0%
ATAGCACGTCAATGATAGCC+AGG + tig0019784:23193-23212 None:intergenic 45.0%
ATCTACTATGGGGTGAGAAG+GGG + tig0019784:23483-23502 None:intergenic 45.0%
CATCTACTATGGGGTGAGAA+GGG + tig0019784:23484-23503 None:intergenic 45.0%
TCATCTACTATGGGGTGAGA+AGG + tig0019784:23485-23504 None:intergenic 45.0%
GGACTTGTACATAGTCCATG+TGG - tig0019784:23785-23804 Msa1376080:intron 45.0%
GAAGTTACGAGAATCCCACA+TGG + tig0019784:23803-23822 None:intergenic 45.0%
! TTGGGTGTGTTTGTTAGTGC+AGG - tig0019784:23873-23892 Msa1376080:intron 45.0%
! TGGGTGTGTTTGTTAGTGCA+GGG - tig0019784:23874-23893 Msa1376080:intron 45.0%
AGCAGATCTCATGCATGATC+TGG - tig0019784:23921-23940 Msa1376080:CDS 45.0%
!!! ATTAAAGTTTTTTTTTTTTT+TGG - tig0019784:17606-17625 Msa1376080:intron 5.0%
!! GTATATAAATAAATAAATAA+TGG + tig0019784:20727-20746 None:intergenic 5.0%
!! TGTAATAAAATAAAATAAAT+AGG - tig0019784:21406-21425 Msa1376080:intron 5.0%
! TCCATGGCTTCGCGTTTTGA+GGG + tig0019784:15181-15200 None:intergenic 50.0%
! TTCCATGGCTTCGCGTTTTG+AGG + tig0019784:15182-15201 None:intergenic 50.0%
CATGAGGCCATCGAATTTGG+AGG + tig0019784:15297-15316 None:intergenic 50.0%
AAGTACATTGAGAGCGGTGG+TGG - tig0019784:15747-15766 Msa1376080:intron 50.0%
GTTTCGCAAACTTCACGTGC+TGG - tig0019784:15861-15880 Msa1376080:intron 50.0%
! TGCTGCCTATGTCTTTTGCC+TGG - tig0019784:16244-16263 Msa1376080:CDS 50.0%
CTTCGCCAGGCAAAAGACAT+AGG + tig0019784:16252-16271 None:intergenic 50.0%
GATGGAATAGCAACTTCGCC+AGG + tig0019784:16265-16284 None:intergenic 50.0%
GCACCATGCTAAGTGTCTCT+TGG - tig0019784:16978-16997 Msa1376080:intron 50.0%
GATGAGAGACTACTCCATCC+AGG + tig0019784:17036-17055 None:intergenic 50.0%
ATGATATGCTGCAGAACGGC+TGG - tig0019784:17124-17143 Msa1376080:intron 50.0%
TCCAAAGGTGGCACTAAACG+GGG - tig0019784:17247-17266 Msa1376080:intron 50.0%
TAAACGGGGGAAAGATGCAG+AGG - tig0019784:17261-17280 Msa1376080:intron 50.0%
AAACGGGGGAAAGATGCAGA+GGG - tig0019784:17262-17281 Msa1376080:intron 50.0%
GTCAAAGGCCGCTAAAGTCA+AGG - tig0019784:17294-17313 Msa1376080:intron 50.0%
AGCCCAGAGATCTTTGCTCT+GGG + tig0019784:17404-17423 None:intergenic 50.0%
! CAAAGATCTCTGGGCTCTGA+AGG - tig0019784:17408-17427 Msa1376080:intron 50.0%
AGCAGAGATGCGTGAAATGC+TGG - tig0019784:17456-17475 Msa1376080:intron 50.0%
CGTGAAATGCTGGATGCCAA+TGG - tig0019784:17466-17485 Msa1376080:intron 50.0%
!! AGCTTGATTTGCGTGACCGT+TGG - tig0019784:17509-17528 Msa1376080:intron 50.0%
CATGTCCATGGTTGTGGATG+AGG - tig0019784:17812-17831 Msa1376080:intron 50.0%
CGGAAATGTATCCAGTGCAC+CGG + tig0019784:18027-18046 None:intergenic 50.0%
GCACTGGATACATTTCCGAG+TGG - tig0019784:18029-18048 Msa1376080:intron 50.0%
TATTGCCTCCGCCATCATCA+AGG - tig0019784:18249-18268 Msa1376080:CDS 50.0%
TCAGCAGGAGTCCTTGATGA+TGG + tig0019784:18263-18282 None:intergenic 50.0%
ATCTTCAGGCAACCCAGAGA+TGG + tig0019784:18351-18370 None:intergenic 50.0%
TCTGCTCCACCGACCAATTT+AGG - tig0019784:18569-18588 Msa1376080:CDS 50.0%
! ACTAACTGCTTGGTGGTCAG+TGG - tig0019784:18663-18682 Msa1376080:intron 50.0%
GGATGAAGTTGAGATGCGGA+AGG - tig0019784:18695-18714 Msa1376080:intron 50.0%
AAGTTGAGATGCGGAAGGCA+AGG - tig0019784:18700-18719 Msa1376080:intron 50.0%
AGATGCGGAAGGCAAGGTAT+TGG - tig0019784:18706-18725 Msa1376080:intron 50.0%
GATTGGTGAGGCTTCTAGCA+TGG - tig0019784:18904-18923 Msa1376080:intron 50.0%
TCATGATGCTTCTGGCCTAC+AGG - tig0019784:18958-18977 Msa1376080:CDS 50.0%
GTATGTGGCCAGAATCCTGT+AGG + tig0019784:18976-18995 None:intergenic 50.0%
GGATTCTGGCCACATACTAG+AGG - tig0019784:18979-18998 Msa1376080:CDS 50.0%
TCTGGCCACATACTAGAGGA+AGG - tig0019784:18983-19002 Msa1376080:CDS 50.0%
CTGGCCACATACTAGAGGAA+GGG - tig0019784:18984-19003 Msa1376080:CDS 50.0%
! ATGGTGACTAATGGGAGCAC+TGG - tig0019784:19670-19689 Msa1376080:intron 50.0%
!! TGGTGACTAATGGGAGCACT+GGG - tig0019784:19671-19690 Msa1376080:intron 50.0%
TTTCGCAAATGGGGTCGAGT+GGG - tig0019784:19881-19900 Msa1376080:intron 50.0%
GATTGGAGGGAACAAACTGG+AGG - tig0019784:19913-19932 Msa1376080:intron 50.0%
GAAAACTGGAAACCCTTGGG+AGG - tig0019784:19985-20004 Msa1376080:intron 50.0%
GCAATGCTGATCCATCAGTC+AGG - tig0019784:20595-20614 Msa1376080:intron 50.0%
AGCAAGCTATCCCTGACTGA+TGG + tig0019784:20609-20628 None:intergenic 50.0%
TACTCATGCCCCCACACATA+CGG - tig0019784:21099-21118 Msa1376080:CDS 50.0%
GTAATCCGTCTACACAGGAC+TGG - tig0019784:21216-21235 Msa1376080:CDS 50.0%
AGACTCCAGTCCTGTGTAGA+CGG + tig0019784:21224-21243 None:intergenic 50.0%
GCCCCTTACAGAGACAAAGT+TGG - tig0019784:21296-21315 Msa1376080:intron 50.0%
GAGGTGCAATTCTCAGTCCT+TGG + tig0019784:22382-22401 None:intergenic 50.0%
ACTGAGCACTCTTGCTGACA+AGG + tig0019784:22623-22642 None:intergenic 50.0%
GTAGAATGCTTTCCTTGCGG+AGG + tig0019784:22929-22948 None:intergenic 50.0%
GATGATGTCGTTGTTCCCTG+TGG - tig0019784:23001-23020 Msa1376080:intron 50.0%
ACCCTCAAAACGCGAAGCCA+TGG - tig0019784:15177-15196 Msa1376080:three_prime_UTR 55.0%
GGTTGCAATGGGACTCTTGC+AGG + tig0019784:15243-15262 None:intergenic 55.0%
CGGAGCTTCTCGGTTGCAAT+GGG + tig0019784:15254-15273 None:intergenic 55.0%
ACGGAGCTTCTCGGTTGCAA+TGG + tig0019784:15255-15274 None:intergenic 55.0%
GGGCATGAGGCCATCGAATT+TGG + tig0019784:15300-15319 None:intergenic 55.0%
TCCAGCACTCGACTTAGAGG+CGG + tig0019784:15817-15836 None:intergenic 55.0%
!! CGTGCTGGTTGCAAGCATTG+CGG - tig0019784:15876-15895 Msa1376080:intron 55.0%
TCAATCGGCGGTCAGTGAGT+TGG - tig0019784:17062-17081 Msa1376080:intron 55.0%
CCAAAGGTGGCACTAAACGG+GGG - tig0019784:17248-17267 Msa1376080:intron 55.0%
AAATGCTGATGACTCCGGGG+CGG - tig0019784:17351-17370 Msa1376080:intron 55.0%
AGGCCCAGAGCAAAGATCTC+TGG - tig0019784:17398-17417 Msa1376080:intron 55.0%
GGCCCAGAGCAAAGATCTCT+GGG - tig0019784:17399-17418 Msa1376080:intron 55.0%
GAGCCCAGAGATCTTTGCTC+TGG + tig0019784:17405-17424 None:intergenic 55.0%
! CTTCGGTTCGCAGGTAGAGT+AGG + tig0019784:18065-18084 None:intergenic 55.0%
CACTTCCCTTCAGCACGCTT+CGG + tig0019784:18082-18101 None:intergenic 55.0%
GGCGGAGGCAATATCCTAGT+TGG + tig0019784:18242-18261 None:intergenic 55.0%
!! GCAGGAGTCCTTGATGATGG+CGG + tig0019784:18260-18279 None:intergenic 55.0%
GCTTCTGGCCTACAGGATTC+TGG - tig0019784:18965-18984 Msa1376080:CDS 55.0%
!! GGTGACTAATGGGAGCACTG+GGG - tig0019784:19672-19691 Msa1376080:intron 55.0%
!! GTGACTAATGGGAGCACTGG+GGG - tig0019784:19673-19692 Msa1376080:intron 55.0%
GTTTCGCAAATGGGGTCGAG+TGG - tig0019784:19880-19899 Msa1376080:intron 55.0%
TTTGTTCCCAGGCCTCCCAA+GGG + tig0019784:20000-20019 None:intergenic 55.0%
! TTTTGTTCCCAGGCCTCCCA+AGG + tig0019784:20001-20020 None:intergenic 55.0%
ACCTGGGAGATTCTTCCCCT+TGG - tig0019784:20036-20055 Msa1376080:intron 55.0%
TCCAAGGGGAAGAATCTCCC+AGG + tig0019784:20040-20059 None:intergenic 55.0%
GATGTCTGCTTCCTCATCCC+AGG - tig0019784:20531-20550 Msa1376080:intron 55.0%
!! TTGGACCGTGGTTTTGCCTG+TGG - tig0019784:20847-20866 Msa1376080:CDS 55.0%
AGCCCCAGCAACTGGCTATA+TGG - tig0019784:22406-22425 Msa1376080:intron 55.0%
ACTGGGCAAGAAAATGCCCC+TGG - tig0019784:22955-22974 Msa1376080:intron 55.0%
CGTTGTTCCCTGTGGGAAAC+CGG - tig0019784:23009-23028 Msa1376080:intron 55.0%
!! GATGACACCGGTTTCCCACA+GGG + tig0019784:23019-23038 None:intergenic 55.0%
!! TGATGACACCGGTTTCCCAC+AGG + tig0019784:23020-23039 None:intergenic 55.0%
GAGAGGGTGAGGAGAGAGAG+TGG - tig0019784:15102-15121 Msa1376080:three_prime_UTR 60.0%
GCAACCGAGAAGCTCCGTCT+TGG - tig0019784:15257-15276 Msa1376080:three_prime_UTR 60.0%
! GAGAGCGGTGGTGGTAGTAG+TGG - tig0019784:15756-15775 Msa1376080:intron 60.0%
GGCACACCGAAGTCGAATGC+TGG - tig0019784:15777-15796 Msa1376080:intron 60.0%
! AGCCTGATGGTCAAGGTGCC+AGG - tig0019784:16944-16963 Msa1376080:intron 60.0%
! GCCTGATGGTCAAGGTGCCA+GGG - tig0019784:16945-16964 Msa1376080:intron 60.0%
! CCTGATGGTCAAGGTGCCAG+GGG - tig0019784:16946-16965 Msa1376080:intron 60.0%
! TGGTCAAGGTGCCAGGGGTT+TGG - tig0019784:16951-16970 Msa1376080:intron 60.0%
! AAGGTGCCAGGGGTTTGGCT+TGG - tig0019784:16956-16975 Msa1376080:intron 60.0%
! ATGGTGCCAAGCCAAACCCC+TGG + tig0019784:16965-16984 None:intergenic 60.0%
CCCCCGTTTAGTGCCACCTT+TGG + tig0019784:17251-17270 None:intergenic 60.0%
AGGGAGATGTGTCTGCGAGC+AGG - tig0019784:17314-17333 Msa1376080:intron 60.0%
GGGAGATGTGTCTGCGAGCA+GGG - tig0019784:17315-17334 Msa1376080:intron 60.0%
TGTGTCTGCGAGCAGGGTAG+CGG - tig0019784:17321-17340 Msa1376080:intron 60.0%
! GGAGGAATGTACCGGTGCAC+TGG - tig0019784:18013-18032 Msa1376080:intron 60.0%
! TTCAGCACGCTTCGGTTCGC+AGG + tig0019784:18074-18093 None:intergenic 60.0%
TGCGAACCGAAGCGTGCTGA+AGG - tig0019784:18073-18092 Msa1376080:intron 60.0%
GCGAACCGAAGCGTGCTGAA+GGG - tig0019784:18074-18093 Msa1376080:intron 60.0%
CGAAGCGTGCTGAAGGGAAG+TGG - tig0019784:18080-18099 Msa1376080:intron 60.0%
!! GGAGTCCTTGATGATGGCGG+AGG + tig0019784:18257-18276 None:intergenic 60.0%
! GGTGGTCAGTGGAGCGCTTA+AGG - tig0019784:18674-18693 Msa1376080:intron 60.0%
!! TAATGGGAGCACTGGGGGTC+TGG - tig0019784:19678-19697 Msa1376080:intron 60.0%
!! AATGGGAGCACTGGGGGTCT+GGG - tig0019784:19679-19698 Msa1376080:intron 60.0%
TGGAAACCCTTGGGAGGCCT+GGG - tig0019784:19991-20010 Msa1376080:intron 60.0%
TAGCCAGTTGCTGGGGCTTC+AGG + tig0019784:22404-22423 None:intergenic 60.0%
GCCGCCTCTAAGTCGAGTGC+TGG - tig0019784:15813-15832 Msa1376080:intron 65.0%
CCCCTGGCACCTTGACCATC+AGG + tig0019784:16949-16968 None:intergenic 65.0%
CTCAAGATCACGTGCCGCCC+CGG + tig0019784:17368-17387 None:intergenic 65.0%
!! ATGGGAGCACTGGGGGTCTG+GGG - tig0019784:19680-19699 Msa1376080:intron 65.0%
! ACTGGGGGTCTGGGGCTGTT+GGG - tig0019784:19688-19707 Msa1376080:intron 65.0%
CTGGAAACCCTTGGGAGGCC+TGG - tig0019784:19990-20009 Msa1376080:intron 65.0%
CCAGTTGCTGGGGCTTCAGG+AGG + tig0019784:22401-22420 None:intergenic 65.0%
CCTCCTGAAGCCCCAGCAAC+TGG - tig0019784:22398-22417 Msa1376080:intron 65.0%
! CACTGGGGGTCTGGGGCTGT+TGG - tig0019784:19687-19706 Msa1376080:intron 70.0%
Chromosome Type Strat End Strand Name
tig0019784 gene 15044 24165 15044 ID=Msa1376080;Name=Msa1376080
tig0019784 mRNA 15044 24165 15044 ID=Msa1376080-mRNA-1;Parent=Msa1376080;Name=Msa1376080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=126|1|1|1|1|1|20|442|1011
tig0019784 exon 15044 15533 15044 ID=Msa1376080-mRNA-1:exon:4951;Parent=Msa1376080-mRNA-1
tig0019784 exon 16113 16295 16113 ID=Msa1376080-mRNA-1:exon:4950;Parent=Msa1376080-mRNA-1
tig0019784 exon 16478 16615 16478 ID=Msa1376080-mRNA-1:exon:4949;Parent=Msa1376080-mRNA-1
tig0019784 exon 16782 16864 16782 ID=Msa1376080-mRNA-1:exon:4948;Parent=Msa1376080-mRNA-1
tig0019784 exon 17868 17976 17868 ID=Msa1376080-mRNA-1:exon:4947;Parent=Msa1376080-mRNA-1
tig0019784 exon 18089 18280 18089 ID=Msa1376080-mRNA-1:exon:4946;Parent=Msa1376080-mRNA-1
tig0019784 exon 18496 18656 18496 ID=Msa1376080-mRNA-1:exon:4945;Parent=Msa1376080-mRNA-1
tig0019784 exon 18782 18858 18782 ID=Msa1376080-mRNA-1:exon:4944;Parent=Msa1376080-mRNA-1
tig0019784 exon 18928 19040 18928 ID=Msa1376080-mRNA-1:exon:4943;Parent=Msa1376080-mRNA-1
tig0019784 exon 19146 19380 19146 ID=Msa1376080-mRNA-1:exon:4942;Parent=Msa1376080-mRNA-1
tig0019784 exon 20147 20398 20147 ID=Msa1376080-mRNA-1:exon:4941;Parent=Msa1376080-mRNA-1
tig0019784 exon 20488 20548 20488 ID=Msa1376080-mRNA-1:exon:4940;Parent=Msa1376080-mRNA-1
tig0019784 exon 20644 20704 20644 ID=Msa1376080-mRNA-1:exon:4939;Parent=Msa1376080-mRNA-1
tig0019784 exon 20833 20997 20833 ID=Msa1376080-mRNA-1:exon:4938;Parent=Msa1376080-mRNA-1
tig0019784 exon 21068 21263 21068 ID=Msa1376080-mRNA-1:exon:4937;Parent=Msa1376080-mRNA-1
tig0019784 exon 21679 22021 21679 ID=Msa1376080-mRNA-1:exon:4936;Parent=Msa1376080-mRNA-1
tig0019784 exon 22095 22281 22095 ID=Msa1376080-mRNA-1:exon:4935;Parent=Msa1376080-mRNA-1
tig0019784 exon 23289 23520 23289 ID=Msa1376080-mRNA-1:exon:4934;Parent=Msa1376080-mRNA-1
tig0019784 exon 23613 23662 23613 ID=Msa1376080-mRNA-1:exon:4933;Parent=Msa1376080-mRNA-1
tig0019784 exon 23890 24165 23890 ID=Msa1376080-mRNA-1:exon:4932;Parent=Msa1376080-mRNA-1
tig0019784 five_prime_UTR 24040 24165 24040 ID=Msa1376080-mRNA-1:five_prime_utr;Parent=Msa1376080-mRNA-1
tig0019784 CDS 23890 24039 23890 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 23613 23662 23613 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 23289 23520 23289 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 22095 22281 22095 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 21679 22021 21679 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 21068 21263 21068 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 20833 20997 20833 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 20644 20704 20644 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 20488 20548 20488 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 20147 20398 20147 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 19146 19380 19146 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 18928 19040 18928 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 18782 18858 18782 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 18496 18656 18496 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 18089 18280 18089 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 17868 17976 17868 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 16782 16864 16782 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 16478 16615 16478 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 16113 16295 16113 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 CDS 15486 15533 15486 ID=Msa1376080-mRNA-1:cds;Parent=Msa1376080-mRNA-1
tig0019784 three_prime_UTR 15044 15485 15044 ID=Msa1376080-mRNA-1:three_prime_utr;Parent=Msa1376080-mRNA-1
Gene Sequence

>Msa1376080

ATGTCGAACCCTCAAAACGCGAAGCCATGGAAAGCAGAGTACGCAAAATCAGGTCGTTCGTCATGCAGAACCTGCAAGAGTCCCATTGCAACCGAGAAGCTCCGTCTTGGAAAAATGGTTCAATCCTCCAAATTCGATGGCCTCATGCCCATGTGGAACCATGCTGAGTGCATATTGAAGAAAGCCAACCAGATAAAATTAGTTGACGATGTTGAGAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATTAGAAAGTACATTGAGAGCGGTGGTGGTAGTAGTGGCACACCGAAGTCGAATGCTGGTTCAAAGTCGAATGCCGCCTCTAAGTCGAGTGCTGGAAAAAATGTTGAATATGGTATTGAAGTTTCGCAAACTTCACGTGCTGGTTGCAAGCATTGCGGTCAAAAAATTATCAAAGGAGAGATTCGCATATCTACTAAGCCTGATGGTCAAGGTGCCAGGGGTTTGGCTTGGCACCATGCTAAGTGTCTCTTGGAACTATCTCCATCAATTGAAGTGGATAATTTGCCTGGATGGAGTAGTCTCTCATCTTCTGATCAATCGGCGGTCAGTGAGTTGGCTACAAAAGACCATCCTACAAAAAGAGGAGGTGGTAGTGGTACAAATGTCGAGGCTGAAGATGTTAAAGAATCCACACAACAATCCTCTTCCAAAGGTGGCACTAAACGGGGGAAAGATGCAGAGGGTGAGCAAAAGTCAAAGGCCGCTAAAGTCAAGGGAGATGTGTCTGCGAGCAGGGTAGCGGCAGTGAAAAATGCTGATGACTCCGGGGCGGCACGTGATCTTGAGAATAGACTGGAGGCCCAGAGCAAAGATCTCTGGGCTCTGAAGGATGATCTTAAAAAGCATGTGACAACAGCAGAGATGCGTGAAATGCTGGATGCCAATGGTCAAGATTCAACAGGATCAGAGCTTGATTTGCGTGACCGTTGTGCTGATGGAATGATGTTTGGAGGACTTAGTCCTTGCTCTCTATGTGATGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCACTGGATACATTTCCGAGTGGAGTAAATGTTCCTACTCTACCTGCGAACCGAAGCGTGCTGAAGGGAAGTGGAAAATCCCAAAGGAAACAGATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAACTAGGATATTGCCTCCGCCATCATCAAGGACTCCTGCTGAAAGTCAAACTTCTGTAGGTCATAACCAAACATCAAACAGTGAAACTTTGGCTGATTTGAGAGTTGCCATCTCTGGGTTGCCTGAAGATTCCGTTGTGGAATGGAAACGCAAAATTGATGCAGTAGGTGGAGTGCTTCATGCAAAAGTGAAGAAAGATACTAACTGCTTGGTGGTCAGTGGAGCGCTTAAGGATGAAGTTGAGATGCGGAAGGCAAGGAAGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATCAAAGTCAAGGGGCAAAGTGCTGTTCATGATGCTTCTGGCCTACAGGATTCTGGCCACATACTAGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATCCTGCAAATAATTGAAGAAGATAATGGGTCAGATTGCTACGTGTTTCGCAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGGAACAAACTGGAGGAAATGTCGAAATCTGATGCAATCAGGGAATTCAAACGACTATTCTTTGAGAAAACTGGAAACCCTTGGGAGGCCTGGGAACAAAAGACTATTCAGAAGCAACCTGGGAGATTCTTCCCCTTGGAAATTGATTATGGAGTTAACAAACAAGTTGTGAAAAAGAGTAAAAACAATGCAGACAGCAAATTACCCCCTCCATTAATAGAATTGATCAAGATGCTCTTTAATGTGGAAACATACAGATCCGCCATGATGGAATTTGAGATCAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATCCAAAAGGGTTTTGAAGCATTAACAGATATACAAAATCTTTTTAAAAGCAGCAATGCTGATCCATCAGTCAGGGATAGCTTGCTCATTGATGCTAGCAATAGGTTCTTCACTGTGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTGGAAGCCCTTCAAGATATTGAAATAGCCTCAAGATTAGTGGGATTTGACGCCAACAACGACGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGACAGTGAAGATTTTAGATTAGTTGAGAAGTTTCTACATACTACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGAGAAGGTGAATTTGATAAATATGCCCCTTACAGAGACAAAGTTGGCAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACGAACTTTGTGGGCATTCTTAACCAAGGACTGAGAATTGCACCTCCTGAAGCCCCAGCAACTGGCTATATGTTTGGCAAAGGGATTTACTTTGCTGACCTTGTCAGCAAGAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTAAGTGAAGTTGCCCTTGGAAATGTGTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCGCAAGGAAAGCATTCTACTAAAGGACTGGGCAAGAAAATGCCCCTGGAATCTGAATATGCAAAGTGGAGAGATGATGTCGTTGTTCCCTGTGGGAAACCGGTGTCATCAAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTTTATAATACCGCTCAAGTTAAACTGCAATTCTTGTTGAAGGTGAGGTTCCATCACAAGAAATGA
Protein sequence

>Msa1376080

MSNPQNAKPWKAEYAKSGRSSCRTCKSPIATEKLRLGKMVQSSKFDGLMPMWNHAECILKKANQIKLVDDVENLESLRWEDQQKIRKYIESGGGSSGTPKSNAGSKSNAASKSSAGKNVEYGIEVSQTSRAGCKHCGQKIIKGEIRISTKPDGQGARGLAWHHAKCLLELSPSIEVDNLPGWSSLSSSDQSAVSELATKDHPTKRGGGSGTNVEAEDVKESTQQSSSKGGTKRGKDAEGEQKSKAAKVKGDVSASRVAAVKNADDSGAARDLENRLEAQSKDLWALKDDLKKHVTTAEMREMLDANGQDSTGSELDLRDRCADGMMFGGLSPCSLCDGFLRYSGGMYRCTGYISEWSKCSYSTCEPKRAEGKWKIPKETDNQYLKKWFKSQKGKKPTRILPPPSSRTPAESQTSVGHNQTSNSETLADLRVAISGLPEDSVVEWKRKIDAVGGVLHAKVKKDTNCLVVSGALKDEVEMRKARKMKIPIVREDYLVDCMERKKKLPFDMYKVEMIGEASSMVTIKVKGQSAVHDASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIEEDNGSDCYVFRKWGRVGNDKIGGNKLEEMSKSDAIREFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQVVKKSKNNADSKLPPPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFKSSNADPSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEDFRLVEKFLHTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYRDKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPQGKHSTKGLGKKMPLESEYAKWRDDVVVPCGKPVSSNVKASELMYNEYIVYNTAQVKLQFLLKVRFHHKK*