AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385000 MtrunA17_Chr4g0054401 97.536 1055 25 1 1 1055 1 1054 0.0 2057
Msa1385000 MtrunA17_Chr7g0220961 31.400 793 503 10 48 824 44 811 4.08e-80 285
Msa1385000 MtrunA17_Chr6g0454711 29.306 836 548 6 12 838 51 852 3.71e-78 279
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385000 AT5G65770.1 53.641 824 375 4 5 825 13 832 0.0 816
Msa1385000 AT5G65770.3 53.641 824 375 4 5 825 13 832 0.0 816
Msa1385000 AT5G65780.2 53.125 832 375 6 5 825 13 840 0.0 804
Msa1385000 AT5G65770.2 51.939 851 375 5 5 825 13 859 0.0 801
Msa1385000 AT1G67230.1 28.347 829 550 8 4 824 12 804 2.15e-70 256
Msa1385000 AT1G13220.3 28.970 825 553 8 11 823 54 857 1.86e-69 253
Msa1385000 AT1G13220.2 28.970 825 553 8 11 823 41 844 2.90e-69 253
Msa1385000 AT1G68790.1 27.690 762 519 5 2 762 24 754 1.06e-56 214
Msa1385000 AT1G13220.1 34.661 251 161 2 11 258 54 304 3.14e-37 145

Find 224 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGAGTCTTTGGCATCTT+TGG 0.205853 tig0020703:-15830 Msa1385000:CDS
CAGCCCATTCTCTATTTCTT+AGG 0.212236 tig0020703:+15143 None:intergenic
CCAACTCATGTTCCCTTTCC+AGG 0.223528 tig0020703:+16019 None:intergenic
CATGTTCCCTTTCCAGGATT+TGG 0.226018 tig0020703:+16025 None:intergenic
TCTTGTAAGATCTCAGAATT+TGG 0.229655 tig0020703:-15701 Msa1385000:CDS
GACTGAAGAATTGAAGAAAT+TGG 0.231000 tig0020703:-15023 Msa1385000:CDS
TTAGATATTACATATATATT+AGG 0.250015 tig0020703:-13436 Msa1385000:three_prime_UTR
AGACTCCTGCAGATCTTTCT+TGG 0.253815 tig0020703:+15843 None:intergenic
ATCTCAGAATTTGGAGCTAT+TGG 0.270107 tig0020703:-15692 Msa1385000:CDS
GTTATTAGTGTATAGATAAT+TGG 0.273305 tig0020703:-13238 Msa1385000:three_prime_UTR
GTATTATGTTGATGCTGTAC+TGG 0.289459 tig0020703:-12832 Msa1385000:three_prime_UTR
TGTCAATTACTCCGAGTTCT+AGG 0.290991 tig0020703:-19242 Msa1385000:CDS
TTTGAAGACGATCTAATTCC+TGG 0.294334 tig0020703:+16651 None:intergenic
GATAACAGGCACTCACTAAA+TGG 0.300038 tig0020703:-16429 Msa1385000:intron
CTTCCCGCCTCTTCTCAATA+AGG 0.300382 tig0020703:+15335 None:intergenic
TGCAATTGCAAATTGCAATT+AGG 0.310934 tig0020703:-13183 Msa1385000:three_prime_UTR
GCCATTCGTTCTTCTGCTCT+TGG 0.314925 tig0020703:+14386 None:intergenic
TGAGCGGACTGAGATAAATT+TGG 0.321576 tig0020703:-15173 Msa1385000:CDS
TGAAATGCTTAAATCTGATA+TGG 0.322733 tig0020703:-14963 Msa1385000:CDS
CATTACTACACGAGCTTCTT+CGG 0.324345 tig0020703:+13830 None:intergenic
GAAAGATCTGCAGGAGTCTT+TGG 0.325327 tig0020703:-15839 Msa1385000:CDS
TCATATGGGCCTTCTCATAT+TGG 0.331170 tig0020703:-17534 Msa1385000:CDS
TTCAAATCCAGATTTGCTTT+TGG 0.332770 tig0020703:-13022 Msa1385000:three_prime_UTR
CATTGTGCCAAAAGCAAATC+TGG 0.346603 tig0020703:+13015 None:intergenic
CCTGATGACTTCTGCACAAA+TGG 0.349964 tig0020703:+14818 None:intergenic
AGCTAACGCAGATTTATTCA+TGG 0.356265 tig0020703:+17430 None:intergenic
GCCTTGTGGTTCTAGTGTAT+TGG 0.363904 tig0020703:-13676 Msa1385000:CDS
CCAGCATATTGATGCTCTTA+AGG 0.365197 tig0020703:-15251 Msa1385000:CDS
TCTGTGCAGATTATCTTGAT+TGG 0.365535 tig0020703:+13746 None:intergenic
GATGTCATTTGTTGGTGTAT+TGG 0.366224 tig0020703:-13266 Msa1385000:three_prime_UTR
ATCAACATCCACATCTTTGC+AGG 0.372268 tig0020703:+14865 None:intergenic
GGAGAAAGCTGCAAAAGAAT+TGG 0.380847 tig0020703:-15230 Msa1385000:CDS
CATATTGGAGAGGAAGGAAT+TGG 0.382576 tig0020703:-17519 Msa1385000:CDS
AGAATTGGAACAGGTTTCCT+TGG 0.383621 tig0020703:-15215 Msa1385000:CDS
ACCTGTTTCCGATTACTGTT+AGG 0.383846 tig0020703:-13619 Msa1385000:intron
ACTCCTTCTCAGACGCTTTG+AGG 0.384043 tig0020703:+15917 None:intergenic
CTGTGCAGATTATCTTGATT+GGG 0.384123 tig0020703:+13747 None:intergenic
AACTCTTGAGTTTCTGTTGT+CGG 0.384140 tig0020703:+12784 None:intergenic
GGTACTTCAACAATTACTTT+TGG 0.384732 tig0020703:+14581 None:intergenic
TTTAGTAATGGACGGCAAAT+GGG 0.387030 tig0020703:-14620 Msa1385000:CDS
AGAGCGTGGTGCGCTTTATA+CGG 0.387276 tig0020703:-19482 Msa1385000:five_prime_UTR
TCTGTGACTAAAGATGTTAA+TGG 0.393938 tig0020703:-14518 Msa1385000:CDS
TTGTACAGGGACTTTGGATG+TGG 0.394338 tig0020703:-13474 Msa1385000:intron
TGTGAATACCTAACAGTAAT+CGG 0.401322 tig0020703:+13611 None:intergenic
CTGGCTTTGTACAGGGACTT+TGG 0.403595 tig0020703:-13480 Msa1385000:intron
CGCTTTCCGATGAACAGATC+TGG 0.406990 tig0020703:-19206 Msa1385000:CDS
TGAAGCAGAAAAGAAATTTA+CGG 0.407769 tig0020703:-17103 Msa1385000:CDS
ATATGATCATCAACATCATA+TGG 0.413448 tig0020703:-17549 Msa1385000:CDS
CTCCCACTCAACTTCAAACT+TGG 0.415131 tig0020703:+15639 None:intergenic
CAATGCAGGATGTCATTTGT+TGG 0.415155 tig0020703:-13274 Msa1385000:intron
CACAAAGTTTAAACTTGAAA+AGG 0.416010 tig0020703:-16615 Msa1385000:CDS
GAGGTCATCCAAAGTGAAAC+AGG 0.416294 tig0020703:-15766 Msa1385000:CDS
CTGTGACTAAAGATGTTAAT+GGG 0.418605 tig0020703:-14517 Msa1385000:CDS
AACAGATCTGGAAACGGCTT+AGG 0.420234 tig0020703:-19194 Msa1385000:CDS
TGTTGATGCTGTACTGGGCT+AGG 0.422310 tig0020703:-12826 Msa1385000:three_prime_UTR
GTGGCTTCTGATACAAATAA+TGG 0.423209 tig0020703:-14689 Msa1385000:CDS
GATAGTTAGAGACAACATAT+TGG 0.428980 tig0020703:-13090 Msa1385000:three_prime_UTR
GAAAACCAGCCTACAACTAC+TGG 0.430253 tig0020703:-16570 Msa1385000:CDS
CGACAAGCTAAGAGAAGAAA+AGG 0.433504 tig0020703:-15524 Msa1385000:CDS
TGCTGATCCACTTGTAGATC+TGG 0.434812 tig0020703:-14423 Msa1385000:CDS
GGCCTCCAGTAGTTGTAGGC+TGG 0.436397 tig0020703:+16565 None:intergenic
GTGGCGTATCAGGAGAATTT+CGG 0.436754 tig0020703:+14735 None:intergenic
ACCTAACAGTAATCGGAAAC+AGG 0.439212 tig0020703:+13618 None:intergenic
AAGCGAAACGCGATAAGCTT+AGG 0.439499 tig0020703:-19321 Msa1385000:five_prime_UTR
ACCACAAGGCAAAATTTCTT+CGG 0.440283 tig0020703:+13689 None:intergenic
AGCTGCAAAAGAATTGGAAC+AGG 0.440708 tig0020703:-15224 Msa1385000:CDS
GGGGTTACTTGCTAGTGAAC+GGG 0.444606 tig0020703:-15470 Msa1385000:CDS
CGGAGTAATTGACAGAGGTT+TGG 0.444619 tig0020703:+19251 None:intergenic
AGGTTTCCTTGGAGATGAAA+AGG 0.444918 tig0020703:-15204 Msa1385000:CDS
CACCCTTACACAACAAGAAC+AGG 0.444990 tig0020703:-16543 Msa1385000:intron
ACCAACAGAAAATATCTTCA+AGG 0.445161 tig0020703:-14934 Msa1385000:CDS
AATTTGCAATTGCATCGATA+AGG 0.446834 tig0020703:+13192 None:intergenic
GCGCTCATTCTTAATAAAAG+TGG 0.447106 tig0020703:+15546 None:intergenic
TGGAAACGGCTTAGGGAGGC+TGG 0.447330 tig0020703:-19186 Msa1385000:CDS
GGGTGGCCTCCAGTAGTTGT+AGG 0.448905 tig0020703:+16561 None:intergenic
AAGCTTAGGATAATCGCGTT+TGG 0.451114 tig0020703:-19307 Msa1385000:five_prime_UTR
CCATTTGTGCAGAAGTCATC+AGG 0.451956 tig0020703:-14818 Msa1385000:CDS
GAACCTGTTCTTGTTGTGTA+AGG 0.453905 tig0020703:+16540 None:intergenic
GTCAATTACTCCGAGTTCTA+GGG 0.454173 tig0020703:-19241 Msa1385000:CDS
GTTGAAGTACCCTCTCTAGA+TGG 0.457116 tig0020703:-14569 Msa1385000:CDS
TGGATGTGGGCATTGGTAGT+TGG 0.457695 tig0020703:-13460 Msa1385000:three_prime_UTR
TGAGAAGAGGCGGGAAGAAG+TGG 0.459412 tig0020703:-15329 Msa1385000:CDS
CATGAACATGCTGAGTGGTT+TGG 0.461814 tig0020703:-15424 Msa1385000:CDS
GAATCTTTGAAGAAGACAAT+AGG 0.462052 tig0020703:-17389 Msa1385000:CDS
TGATAACGCAAAGCAGAGAT+TGG 0.462406 tig0020703:-15788 Msa1385000:CDS
GAGACGAGCTTGGGAATTGA+AGG 0.462973 tig0020703:-16073 Msa1385000:CDS
ATCCCTTTCTGAAAGGCAAA+AGG 0.464632 tig0020703:-16753 Msa1385000:CDS
CGTTAGCTGAATCAAGAAAA+CGG 0.465398 tig0020703:-17415 Msa1385000:CDS
TACTTGGCGTTCTTCTGAAA+AGG 0.469382 tig0020703:+14487 None:intergenic
CTAGTGCTGCTCGATTCTCC+TGG 0.471595 tig0020703:-14784 Msa1385000:CDS
ACAAGTCGCCTGTTTCACTT+TGG 0.473180 tig0020703:+15758 None:intergenic
TCAGAAGGCTATAGCAGATC+GGG 0.474987 tig0020703:-16181 Msa1385000:CDS
TTAAAGAACTTGAGGTTCAA+AGG 0.475754 tig0020703:-15105 Msa1385000:CDS
TCAGAGATTCAGCAGGTGTC+AGG 0.476485 tig0020703:-13879 Msa1385000:CDS
TGCAAATTGCAATTAGGATG+AGG 0.477222 tig0020703:-13177 Msa1385000:three_prime_UTR
TCACAAAATCATCAAGTGTT+CGG 0.481290 tig0020703:+12951 None:intergenic
TAAAGAACTTGAGGTTCAAA+GGG 0.483210 tig0020703:-15104 Msa1385000:CDS
GGAGGTTGATCTTAAACAAC+GGG 0.485407 tig0020703:-16052 Msa1385000:CDS
AGAAGTGGAAAGTTATTTGA+AGG 0.485948 tig0020703:-15314 Msa1385000:CDS
GTGACCTAAGAAATAGAGAA+TGG 0.485995 tig0020703:-15147 Msa1385000:CDS
TAAACAGTACACCCATGACT+TGG 0.488917 tig0020703:-15491 Msa1385000:CDS
GATACAAATAATGGTAGCAA+TGG 0.490045 tig0020703:-14680 Msa1385000:CDS
TCGTGTAGTAATGGTTGATA+AGG 0.492161 tig0020703:-13820 Msa1385000:CDS
TAGGTAGTGGCCTGATCTAA+AGG 0.493923 tig0020703:+14356 None:intergenic
GAATCTCTGATATATCTGAC+TGG 0.495750 tig0020703:+13892 None:intergenic
CAAGTAGGCAGAGGGAAAAG+AGG 0.497312 tig0020703:-14470 Msa1385000:CDS
GGGACTTTGGATGTGGGCAT+TGG 0.497607 tig0020703:-13467 Msa1385000:three_prime_UTR
GGAAAATTTCATGAAGAAGA+TGG 0.499212 tig0020703:-15449 Msa1385000:CDS
ATATATATTAGGAGTGTGTA+AGG 0.499589 tig0020703:-13425 Msa1385000:intron
TTGAGACTAAGAGACGAGCT+TGG 0.500213 tig0020703:-16083 Msa1385000:CDS
ATACAAATAATGGTAGCAAT+GGG 0.500523 tig0020703:-14679 Msa1385000:CDS
TATTATGTTGATGCTGTACT+GGG 0.500683 tig0020703:-12831 Msa1385000:three_prime_UTR
GAATTTGGAGCTATTGGCTG+AGG 0.501774 tig0020703:-15686 Msa1385000:CDS
TAAGGTGTATATACAAAAGC+AGG 0.502182 tig0020703:+13210 None:intergenic
TAGCAATGGGCAAAAGCACT+TGG 0.503709 tig0020703:-14666 Msa1385000:CDS
TGAGGAATCGATTAAGCATA+AGG 0.503828 tig0020703:-19157 Msa1385000:CDS
CGAAGAAGCTCGTGTAGTAA+TGG 0.505439 tig0020703:-13829 Msa1385000:CDS
ACAACGGGAGGACCAAATCC+TGG 0.506111 tig0020703:-16037 Msa1385000:CDS
TGAGACTAAGAGACGAGCTT+GGG 0.506442 tig0020703:-16082 Msa1385000:CDS
GCTACAAATGCAGCGCAAAT+CGG 0.506734 tig0020703:-16118 Msa1385000:CDS
GTTAGCTGAATCAAGAAAAC+GGG 0.507240 tig0020703:-17414 Msa1385000:CDS
CCTTAAGAGCATCAATATGC+TGG 0.508753 tig0020703:+15251 None:intergenic
GAGAATCGAGCAGCACTAGC+AGG 0.513330 tig0020703:+14788 None:intergenic
CCTGGAAAGGGAACATGAGT+TGG 0.515780 tig0020703:-16019 Msa1385000:CDS
AAACAGTACACCCATGACTT+GGG 0.521393 tig0020703:-15490 Msa1385000:CDS
GGCCAAGTTTGAAGTTGAGT+GGG 0.523053 tig0020703:-15641 Msa1385000:CDS
TAGCAAGTAACCCCAAGTCA+TGG 0.524802 tig0020703:+15479 None:intergenic
TGGCGTTCTTCTGAAAAGGC+AGG 0.525277 tig0020703:+14491 None:intergenic
TATTGCTAAGCTTGAAGCTG+AGG 0.526817 tig0020703:-19112 Msa1385000:intron
TGTACAGGGACTTTGGATGT+GGG 0.531404 tig0020703:-13473 Msa1385000:intron
CCGATGAACAGATCTGGAAA+CGG 0.532482 tig0020703:-19200 Msa1385000:CDS
GTGGTTTGGCAAGATGCAGC+AGG 0.532962 tig0020703:-15410 Msa1385000:CDS
CAGAATTTATAGAAAATGAA+AGG 0.535054 tig0020703:-15579 Msa1385000:CDS
ATCCTCTCTTTGGTTGAGCG+AGG 0.535700 tig0020703:+16691 None:intergenic
ACAGATCTGGAAACGGCTTA+GGG 0.536032 tig0020703:-19193 Msa1385000:CDS
TAGATCAGGCCACTACCTAC+TGG 0.536314 tig0020703:-14352 Msa1385000:intron
CTCAGAAGGCTATAGCAGAT+CGG 0.536943 tig0020703:-16182 Msa1385000:CDS
TGGAGAACACAGAAGGAATA+CGG 0.537560 tig0020703:-13656 Msa1385000:CDS
TGACCTAAGAAATAGAGAAT+GGG 0.539081 tig0020703:-15146 Msa1385000:CDS
AACCTGTTCTTGTTGTGTAA+GGG 0.540669 tig0020703:+16541 None:intergenic
TTGAAGACGATCTAATTCCT+GGG 0.540729 tig0020703:+16652 None:intergenic
GTTTGTATATTTAAGCCTCA+AGG 0.540797 tig0020703:-12764 Msa1385000:three_prime_UTR
TATGATCATCAACATCATAT+GGG 0.542963 tig0020703:-17548 Msa1385000:CDS
AGGCCAAGTTTGAAGTTGAG+TGG 0.544846 tig0020703:-15642 Msa1385000:CDS
CCTTCTCATATTGGAGAGGA+AGG 0.544902 tig0020703:-17525 Msa1385000:CDS
GGAGGACCAAATCCTGGAAA+GGG 0.552592 tig0020703:-16031 Msa1385000:CDS
TGGGGTTACTTGCTAGTGAA+CGG 0.552616 tig0020703:-15471 Msa1385000:CDS
ACAAGCCAAGAAAGATCTGC+AGG 0.553193 tig0020703:-15848 Msa1385000:CDS
GCAAATTGCAATTAGGATGA+GGG 0.553275 tig0020703:-13176 Msa1385000:three_prime_UTR
ATTTATTCATGGATAAATCA+CGG 0.557183 tig0020703:+17441 None:intergenic
GAAGAACGCCAAGTAGGCAG+AGG 0.557769 tig0020703:-14479 Msa1385000:CDS
TAAGCATTTCAACAATAGCA+AGG 0.563138 tig0020703:+14975 None:intergenic
CTGTTCTTGTTGTGTAAGGG+TGG 0.565824 tig0020703:+16544 None:intergenic
ATCGCGTTTGGAGTTTGCGA+TGG 0.566188 tig0020703:-19295 Msa1385000:exon
TAATTGTATTAAAGAACTTG+AGG 0.568588 tig0020703:-15113 Msa1385000:CDS
GATATAACAGTGTTGCAGAA+AGG 0.568859 tig0020703:-17029 Msa1385000:CDS
AGATATATCAGAGATTCAGC+AGG 0.569147 tig0020703:-13886 Msa1385000:CDS
CCGTTTCCAGATCTGTTCAT+CGG 0.569949 tig0020703:+19200 None:intergenic
GATGTTGATAACATTGGCAA+TGG 0.570955 tig0020703:-14851 Msa1385000:CDS
GATAGAATCGAAGGTAGAAA+CGG 0.571351 tig0020703:+19438 None:intergenic
AGCAAGTAACCCCAAGTCAT+GGG 0.571896 tig0020703:+15480 None:intergenic
ATTTATAGAAAATGAAAGGA+AGG 0.573898 tig0020703:-15575 Msa1385000:CDS
ATAACCTTATTGAGAAGAGG+CGG 0.574080 tig0020703:-15339 Msa1385000:CDS
ACCAAGAGCAGAAGAACGAA+TGG 0.574615 tig0020703:-14387 Msa1385000:CDS
TGATAAGTTGAAAGCTGAGA+AGG 0.575127 tig0020703:-15662 Msa1385000:CDS
GACAGAGGTTTGGCAGAGCT+AGG 0.577648 tig0020703:+19261 None:intergenic
TAAATAACCTTATTGAGAAG+AGG 0.577808 tig0020703:-15342 Msa1385000:CDS
TTCCGTACGCATCTCATGCA+AGG 0.577859 tig0020703:+17185 None:intergenic
ATGTTGATAACATTGGCAAT+GGG 0.580067 tig0020703:-14850 Msa1385000:CDS
TTGGAAAATGACAAGCCACT+TGG 0.581379 tig0020703:-14647 Msa1385000:CDS
GGGAGGACCAAATCCTGGAA+AGG 0.583998 tig0020703:-16032 Msa1385000:CDS
TAACCTTATTGAGAAGAGGC+GGG 0.584991 tig0020703:-15338 Msa1385000:CDS
CAAGATGCAGCAGGAGCGAG+CGG 0.585787 tig0020703:-15401 Msa1385000:CDS
GCTAGCATTTCCATCTAGAG+AGG 0.589347 tig0020703:+14559 None:intergenic
AAGCGCGTGAAGATATCCTC+AGG 0.590354 tig0020703:-16990 Msa1385000:CDS
AGAGGCAATCCCTTTCTGAA+AGG 0.590940 tig0020703:-16760 Msa1385000:CDS
AAATTTGTACCAGTAGGTAG+TGG 0.593396 tig0020703:+14343 None:intergenic
AAGATATAATTTGCCGCCTG+AGG 0.593589 tig0020703:+16974 None:intergenic
TACGGAATGTGCTGAAACAA+AGG 0.594764 tig0020703:-17169 Msa1385000:CDS
TTAGTAATGGACGGCAAATG+GGG 0.597254 tig0020703:-14619 Msa1385000:CDS
ATCAAGATCACTGAGTGAGA+AGG 0.598320 tig0020703:-15989 Msa1385000:CDS
GGCCTTGCATGAGATGCGTA+CGG 0.599729 tig0020703:-17187 Msa1385000:CDS
CTTGAGTTCCTGCAAAGATG+TGG 0.599792 tig0020703:-14873 Msa1385000:CDS
AAGCCTCAAAGCGTCTGAGA+AGG 0.599945 tig0020703:-15920 Msa1385000:CDS
CTTCTCAAAACCCTAGAACT+CGG 0.600395 tig0020703:+19231 None:intergenic
AATGTAGGATGAAACTCAGA+AGG 0.602666 tig0020703:-16196 Msa1385000:intron
CCTTCCTCTCCAATATGAGA+AGG 0.606050 tig0020703:+17525 None:intergenic
TAACGCAAAGCAGAGATTGG+AGG 0.607102 tig0020703:-15785 Msa1385000:CDS
GAAAGCAACAATCAAAACCA+TGG 0.612375 tig0020703:+13042 None:intergenic
TAGGGAGGCTGGATTTGATG+AGG 0.612435 tig0020703:-19175 Msa1385000:CDS
CAGATCTGTTCATCGGAAAG+CGG 0.614081 tig0020703:+19207 None:intergenic
AATCTCTGATATATCTGACT+GGG 0.618522 tig0020703:+13893 None:intergenic
AGGAGGTTGATCTTAAACAA+CGG 0.618769 tig0020703:-16053 Msa1385000:CDS
AAGAACGCCAAGTAGGCAGA+GGG 0.620212 tig0020703:-14478 Msa1385000:CDS
GGCGTGATTGATAGAATCGA+AGG 0.620245 tig0020703:+19429 None:intergenic
TTCTGCGCCAGATCTACAAG+TGG 0.621294 tig0020703:+14416 None:intergenic
CTAGCATTTCCATCTAGAGA+GGG 0.627557 tig0020703:+14560 None:intergenic
ATAAGGAGATGAATCTTGAG+AGG 0.627569 tig0020703:-16778 Msa1385000:CDS
AACAGTACACCCATGACTTG+GGG 0.628762 tig0020703:-15489 Msa1385000:CDS
ACGAGCTTGGGAATTGAAGG+AGG 0.629550 tig0020703:-16070 Msa1385000:CDS
AATAAGTGCTGTGAGTGCGT+TGG 0.630124 tig0020703:+19408 None:intergenic
GTATGAACATGTTAAAACCA+TGG 0.630158 tig0020703:-17489 Msa1385000:CDS
AGTGTATTGGAGAACACAGA+AGG 0.633214 tig0020703:-13663 Msa1385000:CDS
GAGCAGTTGACAGTTCCACT+AGG 0.641324 tig0020703:+15959 None:intergenic
CATCTTTGCAGGAACTCAAG+CGG 0.649707 tig0020703:+14876 None:intergenic
GGCGTCAAAGATGCATGCAT+AGG 0.650637 tig0020703:-17368 Msa1385000:CDS
GATGTGGATGTTGATAACAT+TGG 0.656585 tig0020703:-14857 Msa1385000:CDS
TGAGAAGGAGAAAGACCTAG+TGG 0.658465 tig0020703:-15974 Msa1385000:CDS
TGGGCCTTCTCATATTGGAG+AGG 0.667331 tig0020703:-17529 Msa1385000:CDS
AACCAGCCTACAACTACTGG+AGG 0.669577 tig0020703:-16567 Msa1385000:CDS
CCATTACTAAAATTACCAAG+TGG 0.673447 tig0020703:+14632 None:intergenic
ATCCTCGCTCAACCAAAGAG+AGG 0.673919 tig0020703:-16693 Msa1385000:CDS
TAACTCAGATGACTCGACCA+TGG 0.674789 tig0020703:+17472 None:intergenic
GGTTGATCTTAAACAACGGG+AGG 0.676677 tig0020703:-16049 Msa1385000:CDS
GATCTGGAAACGGCTTAGGG+AGG 0.677230 tig0020703:-19190 Msa1385000:CDS
TGAAAAGGCTTCAAACTGAG+CGG 0.688590 tig0020703:-15189 Msa1385000:CDS
CATCAGACTCTTACACAAGG+TGG 0.692343 tig0020703:-14899 Msa1385000:CDS
GAACTCGGAGTAATTGACAG+AGG 0.692990 tig0020703:+19246 None:intergenic
CGCGTGAAGATATCCTCAGG+CGG 0.693321 tig0020703:-16987 Msa1385000:CDS
AGCAGAAAAGAAATTTACGG+AGG 0.700844 tig0020703:-17100 Msa1385000:CDS
AAGCATCAGACTCTTACACA+AGG 0.711698 tig0020703:-14902 Msa1385000:CDS
TCCAATACACTAGAACCACA+AGG 0.737093 tig0020703:+13675 None:intergenic
AGTGAAGAAAGAAAAGAGCG+TGG 0.738977 tig0020703:-19496 None:intergenic
TGGCACATGAACATGCTGAG+TGG 0.773883 tig0020703:-15429 Msa1385000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + tig0020703:14929-14948 None:intergenic 0.0%
!!! TTTAATTTGATTTGATAAAT+TGG - tig0020703:13845-13864 Msa1385000:CDS 10.0%
!! TTATTATGATATTCAATTAA+AGG - tig0020703:14018-14037 Msa1385000:intron 10.0%
!! ATATTTAAAAATTCTAAGTT+GGG - tig0020703:15728-15747 Msa1385000:CDS 10.0%
!!! TGTTATTATTTTAATTTTGT+TGG - tig0020703:15965-15984 Msa1385000:CDS 10.0%
!!! TGTTATTATTTTAATTTTGT+TGG - tig0020703:15965-15984 Msa1385000:CDS 10.0%
!! AAATTTATTTATGAGAATAT+TGG - tig0020703:18236-18255 Msa1385000:intron 10.0%
!! TTAGATATTACATATATATT+AGG - tig0020703:18809-18828 Msa1385000:intron 10.0%
!! AATATTATTTATGGCTTATA+TGG - tig0020703:13337-13356 Msa1385000:intron 15.0%
!!! AATTCAAAGTATTCTATAAA+AGG + tig0020703:13812-13831 None:intergenic 15.0%
!!! TATTGTTTTATAGTTAAGTT+TGG + tig0020703:14305-14324 None:intergenic 15.0%
!!! ATAAGAAAAATATATTTTGC+TGG + tig0020703:14650-14669 None:intergenic 15.0%
!! ATCAAAATTTATATCATTAC+AGG + tig0020703:15378-15397 None:intergenic 15.0%
!! CATATTTAAAAATTCTAAGT+TGG - tig0020703:15727-15746 Msa1385000:CDS 15.0%
!! TTAAAATAATAACAATACAG+AGG + tig0020703:15959-15978 None:intergenic 15.0%
!!! ATTATTTTAATTTTGTTGGA+TGG - tig0020703:15969-15988 Msa1385000:CDS 15.0%
!!! ATTATTTTAATTTTGTTGGA+TGG - tig0020703:15969-15988 Msa1385000:CDS 15.0%
!! CTTATGAATAATATATTACT+CGG + tig0020703:18270-18289 None:intergenic 15.0%
!! GATAAAGTTATAGAAATTTA+CGG + tig0020703:18877-18896 None:intergenic 15.0%
!! TTAAGAAAAATCTAGAGATA+CGG - tig0020703:13540-13559 Msa1385000:intron 20.0%
!! ATCAAATTTACACTTTAAAC+TGG - tig0020703:13879-13898 Msa1385000:CDS 20.0%
!! AGATGAACTTTATTGATATT+AGG - tig0020703:13932-13951 Msa1385000:intron 20.0%
!! GATGAACTTTATTGATATTA+GGG - tig0020703:13933-13952 Msa1385000:intron 20.0%
!!! TTTATTGATATTAGGGTTTT+GGG - tig0020703:13940-13959 Msa1385000:intron 20.0%
!! ATTGAATATCATAATAAGCA+TGG + tig0020703:14015-14034 None:intergenic 20.0%
!! ATTAACCTGTTAATGTTAAT+TGG - tig0020703:14148-14167 Msa1385000:intron 20.0%
!! ATTAACCAATTAACATTAAC+AGG + tig0020703:14156-14175 None:intergenic 20.0%
!! CATATTTAAGCAATTCAAAT+TGG - tig0020703:14191-14210 Msa1385000:intron 20.0%
!! GTGTGTATTATAGTTAAATT+TGG - tig0020703:14261-14280 Msa1385000:intron 20.0%
!! ATTTATTCATGGATAAATCA+CGG + tig0020703:14807-14826 None:intergenic 20.0%
!! GAAAGAAAGAAAGAAAAAAT+TGG + tig0020703:14994-15013 None:intergenic 20.0%
!! AAAATTTATATCATTACAGG+TGG + tig0020703:15375-15394 None:intergenic 20.0%
!! TTAAAATAATAACAATGCAG+AGG + tig0020703:16014-16033 None:intergenic 20.0%
!!! AATTTTTGAAGTGAAACTAA+AGG - tig0020703:16511-16530 Msa1385000:intron 20.0%
!! CAGAATTTATAGAAAATGAA+AGG - tig0020703:16666-16685 Msa1385000:CDS 20.0%
!! ATTTATAGAAAATGAAAGGA+AGG - tig0020703:16670-16689 Msa1385000:CDS 20.0%
!! TAATTGTATTAAAGAACTTG+AGG - tig0020703:17132-17151 Msa1385000:CDS 20.0%
!!! GTTAGCATTTTTTTTTTACA+AGG - tig0020703:17947-17966 Msa1385000:intron 20.0%
!! TTAAAAAGTCATACAAATGA+TGG - tig0020703:18067-18086 Msa1385000:intron 20.0%
!! AATAAATTTGTAGATCTTTG+AGG + tig0020703:18225-18244 None:intergenic 20.0%
!! ATATTATTCATAAGTAGTCT+AGG - tig0020703:18276-18295 Msa1385000:intron 20.0%
!!! TTTATTGTAACTTCTTTTCT+AGG - tig0020703:18673-18692 Msa1385000:intron 20.0%
!! TTATCGAAGTAAAATTGATT+GGG + tig0020703:18901-18920 None:intergenic 20.0%
!! ATTATCGAAGTAAAATTGAT+TGG + tig0020703:18902-18921 None:intergenic 20.0%
!! GTTATTAGTGTATAGATAAT+TGG - tig0020703:19007-19026 Msa1385000:intron 20.0%
!!! TGAAATTTTAATCAGCTTCT+TGG + tig0020703:12903-12922 None:intergenic 25.0%
!!! AGTTTGAGTTGATTGAATTA+GGG - tig0020703:13196-13215 Msa1385000:three_prime_UTR 25.0%
!! TTTTACTTTGACATTGTTTG+TGG - tig0020703:13240-13259 Msa1385000:three_prime_UTR 25.0%
!! CTTATATGGATTATTTGTGA+TGG - tig0020703:13351-13370 Msa1385000:intron 25.0%
! AAGTAGAGTAGATTACATAA+AGG - tig0020703:13464-13483 Msa1385000:three_prime_UTR 25.0%
!! TAAAGGTTAGTCAAATTACT+AGG - tig0020703:13481-13500 Msa1385000:intron 25.0%
!! AAAGGTTAGTCAAATTACTA+GGG - tig0020703:13482-13501 Msa1385000:intron 25.0%
!! AGTTTCTCTTATAGTTTTCT+AGG + tig0020703:13519-13538 None:intergenic 25.0%
! GTATTCTATAAAAGGACAAA+TGG + tig0020703:13804-13823 None:intergenic 25.0%
!! CTTTATTGATATTAGGGTTT+TGG - tig0020703:13939-13958 Msa1385000:intron 25.0%
! TTAACTATAATACACACACA+TGG + tig0020703:14258-14277 None:intergenic 25.0%
! ATTTGAATCAAGAAGAGAAT+TGG + tig0020703:14339-14358 None:intergenic 25.0%
!!! GGTTATTTTTACAATACATG+TGG + tig0020703:14430-14449 None:intergenic 25.0%
! ACTTGAAAAGACAATTTGAT+TGG + tig0020703:14557-14576 None:intergenic 25.0%
! ATATGATCATCAACATCATA+TGG - tig0020703:14696-14715 Msa1385000:CDS 25.0%
! TATGATCATCAACATCATAT+GGG - tig0020703:14697-14716 Msa1385000:CDS 25.0%
! TGAAGCAGAAAAGAAATTTA+CGG - tig0020703:15142-15161 Msa1385000:CDS 25.0%
! CACAAAGTTTAAACTTGAAA+AGG - tig0020703:15630-15649 Msa1385000:CDS 25.0%
! ATGAAAAAAAAGAAGAGTTG+CGG - tig0020703:16636-16655 Msa1385000:CDS 25.0%
! TAAATAACCTTATTGAGAAG+AGG - tig0020703:16903-16922 Msa1385000:intron 25.0%
! TGAAATGCTTAAATCTGATA+TGG - tig0020703:17282-17301 Msa1385000:intron 25.0%
! ATACAAATAATGGTAGCAAT+GGG - tig0020703:17566-17585 Msa1385000:intron 25.0%
!!! TTGGTAATTTTAGTAATGGA+CGG - tig0020703:17617-17636 Msa1385000:intron 25.0%
! GTGCTTCAAATCATAAAAAA+GGG - tig0020703:18388-18407 Msa1385000:intron 25.0%
!! ATATATATTAGGAGTGTGTA+AGG - tig0020703:18820-18839 Msa1385000:intron 25.0%
! TATCGAAGTAAAATTGATTG+GGG + tig0020703:18900-18919 None:intergenic 25.0%
!!! TTTTATGAGTACTTTTTCCA+TGG - tig0020703:19186-19205 Msa1385000:CDS 25.0%
!!! GTGTTTGATTTGATTGTTTT+TGG - tig0020703:19329-19348 Msa1385000:five_prime_UTR 25.0%
! TTGTGTTCTTTTTGCTTTAG+GGG + tig0020703:12863-12882 None:intergenic 30.0%
! GTTGTGTTCTTTTTGCTTTA+GGG + tig0020703:12864-12883 None:intergenic 30.0%
! TGTTGTGTTCTTTTTGCTTT+AGG + tig0020703:12865-12884 None:intergenic 30.0%
!! GAGTTTGAGTTGATTGAATT+AGG - tig0020703:13195-13214 Msa1385000:three_prime_UTR 30.0%
!! GTTTGAGTTGATTGAATTAG+GGG - tig0020703:13197-13216 Msa1385000:three_prime_UTR 30.0%
GATTGAATTAGGGGATTAAT+AGG - tig0020703:13206-13225 Msa1385000:three_prime_UTR 30.0%
! ATGGATTATTTGTGATGGTT+CGG - tig0020703:13356-13375 Msa1385000:intron 30.0%
ATACAGTACATTTGTAAGAC+TGG - tig0020703:13382-13401 Msa1385000:intron 30.0%
TGTAAAGATGATAGATCATG+CGG - tig0020703:13658-13677 Msa1385000:CDS 30.0%
CTATCTATGACTTACCTATA+AGG + tig0020703:13690-13709 None:intergenic 30.0%
TTTACACTTTAAACTGGTAG+TGG - tig0020703:13885-13904 Msa1385000:CDS 30.0%
ATATCATAATAAGCATGGAC+CGG + tig0020703:14010-14029 None:intergenic 30.0%
ATTTGCAAAGTCAATTGAGT+TGG - tig0020703:14475-14494 Msa1385000:CDS 30.0%
AATTTGATTGGTGAAGGAAA+AGG + tig0020703:14545-14564 None:intergenic 30.0%
AAAGACAATTTGATTGGTGA+AGG + tig0020703:14551-14570 None:intergenic 30.0%
!! GGTTTTAACATGTTCATACT+TGG + tig0020703:14755-14774 None:intergenic 30.0%
GTATGAACATGTTAAAACCA+TGG - tig0020703:14756-14775 Msa1385000:CDS 30.0%
! GAATCTTTGAAGAAGACAAT+AGG - tig0020703:14856-14875 Msa1385000:CDS 30.0%
CTTTCTTTCTCAAAATGAGA+TGG - tig0020703:15005-15024 Msa1385000:CDS 30.0%
! AAAGGTTTTACAACAAGAAC+AGG - tig0020703:15510-15529 Msa1385000:CDS 30.0%
! TTTTACAACAAGAACAGGAA+AGG - tig0020703:15515-15534 Msa1385000:CDS 30.0%
TAAAAAGATGATCCTCTCTT+TGG + tig0020703:15567-15586 None:intergenic 30.0%
ATAAAAGAACCATTGACCAT+AGG + tig0020703:15923-15942 None:intergenic 30.0%
! TTTTGTTGGATGGAAAATGT+AGG - tig0020703:16034-16053 Msa1385000:CDS 30.0%
!!! ATGTTTTTTTGCTCTCATTG+TGG + tig0020703:16093-16112 None:intergenic 30.0%
! ATCTTTCTCCTTTTGCAAAA+GGG + tig0020703:16369-16388 None:intergenic 30.0%
TCTTGTAAGATCTCAGAATT+TGG - tig0020703:16544-16563 Msa1385000:CDS 30.0%
GGAAAATTTCATGAAGAAGA+TGG - tig0020703:16796-16815 Msa1385000:intron 30.0%
GGATATTGAGATGCAAAAAA+GGG - tig0020703:16877-16896 Msa1385000:intron 30.0%
AGAAGTGGAAAGTTATTTGA+AGG - tig0020703:16931-16950 Msa1385000:intron 30.0%
!! TTTTGAGGAAGAGAAGAATA+GGG - tig0020703:16967-16986 Msa1385000:CDS 30.0%
TGACCTAAGAAATAGAGAAT+GGG - tig0020703:17099-17118 Msa1385000:CDS 30.0%
TTAAAGAACTTGAGGTTCAA+AGG - tig0020703:17140-17159 Msa1385000:CDS 30.0%
TAAAGAACTTGAGGTTCAAA+GGG - tig0020703:17141-17160 Msa1385000:CDS 30.0%
GACTGAAGAATTGAAGAAAT+TGG - tig0020703:17222-17241 Msa1385000:intron 30.0%
TAAGCATTTCAACAATAGCA+AGG + tig0020703:17273-17292 None:intergenic 30.0%
ACCAACAGAAAATATCTTCA+AGG - tig0020703:17311-17330 Msa1385000:intron 30.0%
! TCCTTGAAGATATTTTCTGT+TGG + tig0020703:17315-17334 None:intergenic 30.0%
!! ATGTTGATAACATTGGCAAT+GGG - tig0020703:17395-17414 Msa1385000:CDS 30.0%
!!! AAATTTCCTTTTTTCGTGAG+TGG + tig0020703:17532-17551 None:intergenic 30.0%
ACTCACGAAAAAAGGAAATT+TGG - tig0020703:17531-17550 Msa1385000:CDS 30.0%
GATACAAATAATGGTAGCAA+TGG - tig0020703:17565-17584 Msa1385000:intron 30.0%
CCATTACTAAAATTACCAAG+TGG + tig0020703:17616-17635 None:intergenic 30.0%
!! CCACTTGGTAATTTTAGTAA+TGG - tig0020703:17613-17632 Msa1385000:intron 30.0%
! GGTACTTCAACAATTACTTT+TGG + tig0020703:17667-17686 None:intergenic 30.0%
TCTGTGACTAAAGATGTTAA+TGG - tig0020703:17727-17746 Msa1385000:intron 30.0%
CTGTGACTAAAGATGTTAAT+GGG - tig0020703:17728-17747 Msa1385000:intron 30.0%
ACAAATAGTGTGTTTCAGTA+GGG + tig0020703:17929-17948 None:intergenic 30.0%
AACAAATAGTGTGTTTCAGT+AGG + tig0020703:17930-17949 None:intergenic 30.0%
!! TACAAATGATGGATTGTGAT+TGG - tig0020703:18078-18097 Msa1385000:intron 30.0%
AATCTCTGATATATCTGACT+GGG + tig0020703:18355-18374 None:intergenic 30.0%
GGTGCTTCAAATCATAAAAA+AGG - tig0020703:18387-18406 Msa1385000:intron 30.0%
TGTGAATACCTAACAGTAAT+CGG + tig0020703:18637-18656 None:intergenic 30.0%
ATCGAAGTAAAATTGATTGG+GGG + tig0020703:18899-18918 None:intergenic 30.0%
TAAGGTGTATATACAAAAGC+AGG + tig0020703:19038-19057 None:intergenic 30.0%
! AATTTGCAATTGCATCGATA+AGG + tig0020703:19056-19075 None:intergenic 30.0%
TGCAATTGCAAATTGCAATT+AGG - tig0020703:19062-19081 Msa1385000:intron 30.0%
GATAGTTAGAGACAACATAT+TGG - tig0020703:19155-19174 Msa1385000:CDS 30.0%
!! TTCAAATCCAGATTTGCTTT+TGG - tig0020703:19223-19242 Msa1385000:CDS 30.0%
TCACAAAATCATCAAGTGTT+CGG + tig0020703:19297-19316 None:intergenic 30.0%
!! AGCTCTTGTTTATATTTTGC+TGG - tig0020703:19374-19393 Msa1385000:five_prime_UTR 30.0%
TATTATGTTGATGCTGTACT+GGG - tig0020703:19414-19433 Msa1385000:five_prime_UTR 30.0%
GTTTGTATATTTAAGCCTCA+AGG - tig0020703:19481-19500 Msa1385000:five_prime_UTR 30.0%
GATAGAATCGAAGGTAGAAA+CGG + tig0020703:12810-12829 None:intergenic 35.0%
TGAGGAATCGATTAAGCATA+AGG - tig0020703:13088-13107 Msa1385000:three_prime_UTR 35.0%
ACTTTGACATTGTTTGTGGT+TGG - tig0020703:13244-13263 Msa1385000:three_prime_UTR 35.0%
AAAATCTAGAGATACGGAGT+TGG - tig0020703:13546-13565 Msa1385000:intron 35.0%
TTGAAGCTATCACATTGAGT+AGG - tig0020703:13967-13986 Msa1385000:intron 35.0%
TGATCATTGCGCAAATTACA+AGG + tig0020703:14108-14127 None:intergenic 35.0%
GAAGGATATATGCAATGAGA+GGG + tig0020703:14236-14255 None:intergenic 35.0%
CTATAATACACACACATGGA+AGG + tig0020703:14254-14273 None:intergenic 35.0%
ACAGTGACCATTCATGTTAT+TGG - tig0020703:14622-14641 Msa1385000:CDS 35.0%
AGCTAACGCAGATTTATTCA+TGG + tig0020703:14818-14837 None:intergenic 35.0%
CGTTAGCTGAATCAAGAAAA+CGG - tig0020703:14830-14849 Msa1385000:CDS 35.0%
GTTAGCTGAATCAAGAAAAC+GGG - tig0020703:14831-14850 Msa1385000:CDS 35.0%
!!! TTGCTTTTTGAAGCTTGAGA+AGG - tig0020703:15037-15056 Msa1385000:CDS 35.0%
AGCAGAAAAGAAATTTACGG+AGG - tig0020703:15145-15164 Msa1385000:CDS 35.0%
GATATAACAGTGTTGCAGAA+AGG - tig0020703:15216-15235 Msa1385000:CDS 35.0%
CAGCTGTGATGAAAAAGATA+AGG - tig0020703:15450-15469 Msa1385000:CDS 35.0%
ATAAGGAGATGAATCTTGAG+AGG - tig0020703:15467-15486 Msa1385000:CDS 35.0%
! AACCTTTTGCCTTTCAGAAA+GGG + tig0020703:15497-15516 None:intergenic 35.0%
! AAACCTTTTGCCTTTCAGAA+AGG + tig0020703:15498-15517 None:intergenic 35.0%
!! TCATCTTTTTAGTAGATCCC+AGG - tig0020703:15576-15595 Msa1385000:CDS 35.0%
TTGAAGACGATCTAATTCCT+GGG + tig0020703:15596-15615 None:intergenic 35.0%
TTTGAAGACGATCTAATTCC+TGG + tig0020703:15597-15616 None:intergenic 35.0%
AGATCGTCTTCAAAAAGAGT+TGG - tig0020703:15603-15622 Msa1385000:CDS 35.0%
! AACCTGTTCTTGTTGTGTAA+GGG + tig0020703:15707-15726 None:intergenic 35.0%
ATCTGTATGTTCTCTTCCTA+TGG - tig0020703:15904-15923 Msa1385000:CDS 35.0%
AATGTAGGATGAAACTCAGA+AGG - tig0020703:16049-16068 Msa1385000:CDS 35.0%
! AGGAGGTTGATCTTAAACAA+CGG - tig0020703:16192-16211 Msa1385000:CDS 35.0%
! AAACACAACCCTTTTGCAAA+AGG - tig0020703:16358-16377 Msa1385000:intron 35.0%
! CATCTTTCTCCTTTTGCAAA+AGG + tig0020703:16370-16389 None:intergenic 35.0%
! ATCTCAGAATTTGGAGCTAT+TGG - tig0020703:16553-16572 Msa1385000:CDS 35.0%
! TGATAAGTTGAAAGCTGAGA+AGG - tig0020703:16583-16602 Msa1385000:CDS 35.0%
GCGCTCATTCTTAATAAAAG+TGG + tig0020703:16702-16721 None:intergenic 35.0%
GGGATATTGAGATGCAAAAA+AGG - tig0020703:16876-16895 Msa1385000:intron 35.0%
ATAACCTTATTGAGAAGAGG+CGG - tig0020703:16906-16925 Msa1385000:intron 35.0%
!! CTTTTGAGGAAGAGAAGAAT+AGG - tig0020703:16966-16985 Msa1385000:CDS 35.0%
GTGACCTAAGAAATAGAGAA+TGG - tig0020703:17098-17117 Msa1385000:CDS 35.0%
!! GATGTGGATGTTGATAACAT+TGG - tig0020703:17388-17407 Msa1385000:CDS 35.0%
!! GATGTTGATAACATTGGCAA+TGG - tig0020703:17394-17413 Msa1385000:CDS 35.0%
GAAAAAAGGAAATTTGGCTG+TGG - tig0020703:17537-17556 Msa1385000:CDS 35.0%
GTGGCTTCTGATACAAATAA+TGG - tig0020703:17556-17575 Msa1385000:intron 35.0%
!!! TTTTAGTAATGGACGGCAAA+TGG - tig0020703:17624-17643 Msa1385000:intron 35.0%
!! TTTAGTAATGGACGGCAAAT+GGG - tig0020703:17625-17644 Msa1385000:intron 35.0%
AAATTTGTACCAGTAGGTAG+TGG + tig0020703:17905-17924 None:intergenic 35.0%
TAAGTAGTCTAGGTGTAGTA+TGG - tig0020703:18286-18305 Msa1385000:intron 35.0%
GAATCTCTGATATATCTGAC+TGG + tig0020703:18356-18375 None:intergenic 35.0%
AGATATATCAGAGATTCAGC+AGG - tig0020703:18359-18378 Msa1385000:intron 35.0%
! TCGTGTAGTAATGGTTGATA+AGG - tig0020703:18425-18444 Msa1385000:intron 35.0%
CTGTGCAGATTATCTTGATT+GGG + tig0020703:18501-18520 None:intergenic 35.0%
TCTGTGCAGATTATCTTGAT+TGG + tig0020703:18502-18521 None:intergenic 35.0%
ACCACAAGGCAAAATTTCTT+CGG + tig0020703:18559-18578 None:intergenic 35.0%
! TGTAACTTCTTTTCTAGGCT+AGG - tig0020703:18678-18697 Msa1385000:intron 35.0%
! AAGTTCTTTTCTTGCAATGC+AGG - tig0020703:18957-18976 Msa1385000:intron 35.0%
! GATGTCATTTGTTGGTGTAT+TGG - tig0020703:18979-18998 Msa1385000:intron 35.0%
TGCAAATTGCAATTAGGATG+AGG - tig0020703:19068-19087 Msa1385000:intron 35.0%
GCAAATTGCAATTAGGATGA+GGG - tig0020703:19069-19088 Msa1385000:intron 35.0%
GAAAGCAACAATCAAAACCA+TGG + tig0020703:19206-19225 None:intergenic 35.0%
GTATTATGTTGATGCTGTAC+TGG - tig0020703:19413-19432 Msa1385000:five_prime_UTR 35.0%
AACTCTTGAGTTTCTGTTGT+CGG + tig0020703:19464-19483 None:intergenic 35.0%
AAGCTTAGGATAATCGCGTT+TGG - tig0020703:12938-12957 Msa1385000:three_prime_UTR 40.0%
TGTCAATTACTCCGAGTTCT+AGG - tig0020703:13003-13022 Msa1385000:three_prime_UTR 40.0%
GTCAATTACTCCGAGTTCTA+GGG - tig0020703:13004-13023 Msa1385000:three_prime_UTR 40.0%
CTTCTCAAAACCCTAGAACT+CGG + tig0020703:13017-13036 None:intergenic 40.0%
TATTGCTAAGCTTGAAGCTG+AGG - tig0020703:13133-13152 Msa1385000:three_prime_UTR 40.0%
GGGGATTAATAGGTTTCATC+AGG - tig0020703:13216-13235 Msa1385000:three_prime_UTR 40.0%
! GATTATTTGTGATGGTTCGG+TGG - tig0020703:13359-13378 Msa1385000:intron 40.0%
! TGTAAGACTGGTGATGTAGT+TGG - tig0020703:13394-13413 Msa1385000:intron 40.0%
! GTAAGACTGGTGATGTAGTT+GGG - tig0020703:13395-13414 Msa1385000:intron 40.0%
TTGATAAATTGGCGCTGCAA+TGG - tig0020703:13856-13875 Msa1385000:CDS 40.0%
GGACTTTACCTAATCAGTTC+CGG - tig0020703:13988-14007 Msa1385000:intron 40.0%
GGAAGGATATATGCAATGAG+AGG + tig0020703:14237-14256 None:intergenic 40.0%
TGAACTGACCATGAAAGCTA+AGG + tig0020703:14456-14475 None:intergenic 40.0%
TCATATGGGCCTTCTCATAT+TGG - tig0020703:14711-14730 Msa1385000:CDS 40.0%
CATATTGGAGAGGAAGGAAT+TGG - tig0020703:14726-14745 Msa1385000:CDS 40.0%
TACGGAATGTGCTGAAACAA+AGG - tig0020703:15076-15095 Msa1385000:CDS 40.0%
! AAGATATAATTTGCCGCCTG+AGG + tig0020703:15274-15293 None:intergenic 40.0%
! ATCCCTTTCTGAAAGGCAAA+AGG - tig0020703:15492-15511 Msa1385000:CDS 40.0%
TCGTCTTCAAAAAGAGTTGG+AGG - tig0020703:15606-15625 Msa1385000:CDS 40.0%
! GAACCTGTTCTTGTTGTGTA+AGG + tig0020703:15708-15727 None:intergenic 40.0%
TTATCACAACGCATATCCAC+GGG + tig0020703:15801-15820 None:intergenic 40.0%
GTTATCACAACGCATATCCA+CGG + tig0020703:15802-15821 None:intergenic 40.0%
TGGATATGCGTTGTGATAAC+AGG - tig0020703:15802-15821 Msa1385000:CDS 40.0%
GATAACAGGCACTCACTAAA+TGG - tig0020703:15816-15835 Msa1385000:CDS 40.0%
TGTTCTCTTCCTATGGTCAA+TGG - tig0020703:15911-15930 Msa1385000:CDS 40.0%
! GGAGGTTGATCTTAAACAAC+GGG - tig0020703:16193-16212 Msa1385000:intron 40.0%
ATCAAGATCACTGAGTGAGA+AGG - tig0020703:16256-16275 Msa1385000:intron 40.0%
! TGATAACGCAAAGCAGAGAT+TGG - tig0020703:16457-16476 Msa1385000:intron 40.0%
CGACAAGCTAAGAGAAGAAA+AGG - tig0020703:16721-16740 Msa1385000:CDS 40.0%
TAACCTTATTGAGAAGAGGC+GGG - tig0020703:16907-16926 Msa1385000:intron 40.0%
! GGAAAGAGAAACAGCTTTTG+AGG - tig0020703:16952-16971 Msa1385000:intron 40.0%
!! CCTTAAGAGCATCAATATGC+TGG + tig0020703:16997-17016 None:intergenic 40.0%
CCAGCATATTGATGCTCTTA+AGG - tig0020703:16994-17013 Msa1385000:CDS 40.0%
GGAGAAAGCTGCAAAAGAAT+TGG - tig0020703:17015-17034 Msa1385000:CDS 40.0%
AGCTGCAAAAGAATTGGAAC+AGG - tig0020703:17021-17040 Msa1385000:CDS 40.0%
AGAATTGGAACAGGTTTCCT+TGG - tig0020703:17030-17049 Msa1385000:CDS 40.0%
AGGTTTCCTTGGAGATGAAA+AGG - tig0020703:17041-17060 Msa1385000:CDS 40.0%
! TTGAAGCCTTTTCATCTCCA+AGG + tig0020703:17050-17069 None:intergenic 40.0%
TGAAAAGGCTTCAAACTGAG+CGG - tig0020703:17056-17075 Msa1385000:CDS 40.0%
!! TGAGCGGACTGAGATAAATT+TGG - tig0020703:17072-17091 Msa1385000:CDS 40.0%
! CAGCCCATTCTCTATTTCTT+AGG + tig0020703:17105-17124 None:intergenic 40.0%
AAGCATCAGACTCTTACACA+AGG - tig0020703:17343-17362 Msa1385000:intron 40.0%
ATCAACATCCACATCTTTGC+AGG + tig0020703:17383-17402 None:intergenic 40.0%
TTGGAAAATGACAAGCCACT+TGG - tig0020703:17598-17617 Msa1385000:intron 40.0%
!! TTAGTAATGGACGGCAAATG+GGG - tig0020703:17626-17645 Msa1385000:intron 40.0%
CTAGCATTTCCATCTAGAGA+GGG + tig0020703:17688-17707 None:intergenic 40.0%
! TACTTGGCGTTCTTCTGAAA+AGG + tig0020703:17761-17780 None:intergenic 40.0%
! TTTTCAGAAGAACGCCAAGT+AGG - tig0020703:17760-17779 Msa1385000:intron 40.0%
GGCCAAAAATCCTTTAGATC+AGG - tig0020703:17879-17898 Msa1385000:intron 40.0%
! GGCCTGATCTAAAGGATTTT+TGG + tig0020703:17884-17903 None:intergenic 40.0%
TAGGGCAAATTTGTACCAGT+AGG + tig0020703:17911-17930 None:intergenic 40.0%
! TAAGCCAATGAAAGCACAAG+TGG - tig0020703:18187-18206 Msa1385000:intron 40.0%
CATTACTACACGAGCTTCTT+CGG + tig0020703:18418-18437 None:intergenic 40.0%
! TCCGAAGAAATTTTGCCTTG+TGG - tig0020703:18555-18574 Msa1385000:intron 40.0%
TCCAATACACTAGAACCACA+AGG + tig0020703:18573-18592 None:intergenic 40.0%
AGTGTATTGGAGAACACAGA+AGG - tig0020703:18582-18601 Msa1385000:intron 40.0%
TGGAGAACACAGAAGGAATA+CGG - tig0020703:18589-18608 Msa1385000:intron 40.0%
ACCTGTTTCCGATTACTGTT+AGG - tig0020703:18626-18645 Msa1385000:intron 40.0%
ACCTAACAGTAATCGGAAAC+AGG + tig0020703:18630-18649 None:intergenic 40.0%
AGCCAGCATTAAGTTATGAG+CGG + tig0020703:18751-18770 None:intergenic 40.0%
!! ACTTAATGCTGGCTTTGTAC+AGG - tig0020703:18757-18776 Msa1385000:intron 40.0%
!! CTTAATGCTGGCTTTGTACA+GGG - tig0020703:18758-18777 Msa1385000:intron 40.0%
! CAATGCAGGATGTCATTTGT+TGG - tig0020703:18971-18990 Msa1385000:intron 40.0%
CATTGTGCCAAAAGCAAATC+TGG + tig0020703:19233-19252 None:intergenic 40.0%
!! ATTTGCTTTTGGCACAATGC+TGG - tig0020703:19234-19253 Msa1385000:CDS 40.0%
!! TTTGCTTTTGGCACAATGCT+GGG - tig0020703:19235-19254 Msa1385000:CDS 40.0%
GGCGTGATTGATAGAATCGA+AGG + tig0020703:12819-12838 None:intergenic 45.0%
! AATAAGTGCTGTGAGTGCGT+TGG + tig0020703:12840-12859 None:intergenic 45.0%
AAGCGAAACGCGATAAGCTT+AGG - tig0020703:12924-12943 Msa1385000:three_prime_UTR 45.0%
CGGAGTAATTGACAGAGGTT+TGG + tig0020703:12997-13016 None:intergenic 45.0%
GAACTCGGAGTAATTGACAG+AGG + tig0020703:13002-13021 None:intergenic 45.0%
CAGATCTGTTCATCGGAAAG+CGG + tig0020703:13041-13060 None:intergenic 45.0%
CCGTTTCCAGATCTGTTCAT+CGG + tig0020703:13048-13067 None:intergenic 45.0%
CCGATGAACAGATCTGGAAA+CGG - tig0020703:13045-13064 Msa1385000:three_prime_UTR 45.0%
AACAGATCTGGAAACGGCTT+AGG - tig0020703:13051-13070 Msa1385000:three_prime_UTR 45.0%
ACAGATCTGGAAACGGCTTA+GGG - tig0020703:13052-13071 Msa1385000:three_prime_UTR 45.0%
ATGTAGTTGGGCCGTAAAGA+TGG - tig0020703:13407-13426 Msa1385000:intron 45.0%
AGTCAAATTACTAGGGCCAG+AGG - tig0020703:13489-13508 Msa1385000:intron 45.0%
AAATTACTAGGGCCAGAGGA+AGG - tig0020703:13493-13512 Msa1385000:intron 45.0%
! TAGTTTTCTAGGCCTTCCTC+TGG + tig0020703:13508-13527 None:intergenic 45.0%
ACTTAGTGAGGTCGGCTAAA+TGG + tig0020703:13608-13627 None:intergenic 45.0%
ATTTAGCCGACCTCACTAAG+TGG - tig0020703:13607-13626 Msa1385000:intron 45.0%
TTTAGCCGACCTCACTAAGT+GGG - tig0020703:13608-13627 Msa1385000:intron 45.0%
AAGTCTTACCCCACTTAGTG+AGG + tig0020703:13620-13639 None:intergenic 45.0%
CACTAAGTGGGGTAAGACTT+TGG - tig0020703:13620-13639 Msa1385000:CDS 45.0%
!! AGAGTATTGATACGTGCCTG+CGG - tig0020703:13770-13789 Msa1385000:CDS 45.0%
!! CTGGTAGTGGTTGATTGTAG+TGG - tig0020703:13898-13917 Msa1385000:CDS 45.0%
! GCACAGTGATTCGTGTTGAT+CGG - tig0020703:14376-14395 Msa1385000:CDS 45.0%
! TAACCACGCCTTAGCTTTCA+TGG - tig0020703:14445-14464 Msa1385000:CDS 45.0%
GCTGGCACCAATAACATGAA+TGG + tig0020703:14632-14651 None:intergenic 45.0%
CCTTCCTCTCCAATATGAGA+AGG + tig0020703:14723-14742 None:intergenic 45.0%
CCTTCTCATATTGGAGAGGA+AGG - tig0020703:14720-14739 Msa1385000:CDS 45.0%
TAACTCAGATGACTCGACCA+TGG + tig0020703:14776-14795 None:intergenic 45.0%
TAAAGATCACTCGCTTGCTC+AGG + tig0020703:15351-15370 None:intergenic 45.0%
TTCATCACAGCTGTGAGAGA+CGG + tig0020703:15443-15462 None:intergenic 45.0%
AGAGGCAATCCCTTTCTGAA+AGG - tig0020703:15485-15504 Msa1385000:CDS 45.0%
!!! GCTGGTTTTCTTGTCATGGA+GGG + tig0020703:15665-15684 None:intergenic 45.0%
!!! GTAGGCTGGTTTTCTTGTCA+TGG + tig0020703:15669-15688 None:intergenic 45.0%
GAAAACCAGCCTACAACTAC+TGG - tig0020703:15675-15694 Msa1385000:CDS 45.0%
! CTGTTCTTGTTGTGTAAGGG+TGG + tig0020703:15704-15723 None:intergenic 45.0%
CACCCTTACACAACAAGAAC+AGG - tig0020703:15702-15721 Msa1385000:CDS 45.0%
! ATTTCTGTCTTGTTCACCCG+TGG - tig0020703:15782-15801 Msa1385000:CDS 45.0%
CTCAGAAGGCTATAGCAGAT+CGG - tig0020703:16063-16082 Msa1385000:CDS 45.0%
TCAGAAGGCTATAGCAGATC+GGG - tig0020703:16064-16083 Msa1385000:CDS 45.0%
GCTACAAATGCAGCGCAAAT+CGG - tig0020703:16127-16146 Msa1385000:CDS 45.0%
TTGAGACTAAGAGACGAGCT+TGG - tig0020703:16162-16181 Msa1385000:CDS 45.0%
TGAGACTAAGAGACGAGCTT+GGG - tig0020703:16163-16182 Msa1385000:CDS 45.0%
GGTTGATCTTAAACAACGGG+AGG - tig0020703:16196-16215 Msa1385000:intron 45.0%
CATGTTCCCTTTCCAGGATT+TGG + tig0020703:16223-16242 None:intergenic 45.0%
TGAGAAGGAGAAAGACCTAG+TGG - tig0020703:16271-16290 Msa1385000:intron 45.0%
ACAAGCCAAGAAAGATCTGC+AGG - tig0020703:16397-16416 Msa1385000:CDS 45.0%
AGACTCCTGCAGATCTTTCT+TGG + tig0020703:16405-16424 None:intergenic 45.0%
GAAAGATCTGCAGGAGTCTT+TGG - tig0020703:16406-16425 Msa1385000:CDS 45.0%
TAACGCAAAGCAGAGATTGG+AGG - tig0020703:16460-16479 Msa1385000:intron 45.0%
GAGGTCATCCAAAGTGAAAC+AGG - tig0020703:16479-16498 Msa1385000:intron 45.0%
ACAAGTCGCCTGTTTCACTT+TGG + tig0020703:16490-16509 None:intergenic 45.0%
! GAATTTGGAGCTATTGGCTG+AGG - tig0020703:16559-16578 Msa1385000:CDS 45.0%
! AGGCCAAGTTTGAAGTTGAG+TGG - tig0020703:16603-16622 Msa1385000:CDS 45.0%
! GGCCAAGTTTGAAGTTGAGT+GGG - tig0020703:16604-16623 Msa1385000:CDS 45.0%
CTCCCACTCAACTTCAAACT+TGG + tig0020703:16609-16628 None:intergenic 45.0%
AACAGTACACCCATGACTTG+GGG - tig0020703:16756-16775 Msa1385000:CDS 45.0%
AGCAAGTAACCCCAAGTCAT+GGG + tig0020703:16768-16787 None:intergenic 45.0%
TAGCAAGTAACCCCAAGTCA+TGG + tig0020703:16769-16788 None:intergenic 45.0%
! TGGGGTTACTTGCTAGTGAA+CGG - tig0020703:16774-16793 Msa1385000:CDS 45.0%
CATGAACATGCTGAGTGGTT+TGG - tig0020703:16821-16840 Msa1385000:intron 45.0%
CATCAGACTCTTACACAAGG+TGG - tig0020703:17346-17365 Msa1385000:intron 45.0%
CATCTTTGCAGGAACTCAAG+CGG + tig0020703:17372-17391 None:intergenic 45.0%
CTTGAGTTCCTGCAAAGATG+TGG - tig0020703:17372-17391 Msa1385000:CDS 45.0%
CCTGATGACTTCTGCACAAA+TGG + tig0020703:17430-17449 None:intergenic 45.0%
CCATTTGTGCAGAAGTCATC+AGG - tig0020703:17427-17446 Msa1385000:CDS 45.0%
! CTCTGTGCATCGTTTTATCC+AGG + tig0020703:17482-17501 None:intergenic 45.0%
GTGGCGTATCAGGAGAATTT+CGG + tig0020703:17513-17532 None:intergenic 45.0%
! TTTTTCGTGAGTGGCGTATC+AGG + tig0020703:17523-17542 None:intergenic 45.0%
GATACGCCACTCACGAAAAA+AGG - tig0020703:17523-17542 Msa1385000:CDS 45.0%
!! TAGCAATGGGCAAAAGCACT+TGG - tig0020703:17579-17598 Msa1385000:intron 45.0%
! CGGCAAATGGGGTTTTCTTT+TGG - tig0020703:17637-17656 Msa1385000:intron 45.0%
! GTTGAAGTACCCTCTCTAGA+TGG - tig0020703:17676-17695 Msa1385000:intron 45.0%
GCTAGCATTTCCATCTAGAG+AGG + tig0020703:17689-17708 None:intergenic 45.0%
TGCTGATCCACTTGTAGATC+TGG - tig0020703:17822-17841 Msa1385000:intron 45.0%
ACCAAGAGCAGAAGAACGAA+TGG - tig0020703:17858-17877 Msa1385000:intron 45.0%
! TAGGTAGTGGCCTGATCTAA+AGG + tig0020703:17892-17911 None:intergenic 45.0%
AGCACCACTTGTGCTTTCAT+TGG + tig0020703:18194-18213 None:intergenic 45.0%
CGAAGAAGCTCGTGTAGTAA+TGG - tig0020703:18416-18435 Msa1385000:intron 45.0%
!! GCCTTGTGGTTCTAGTGTAT+TGG - tig0020703:18569-18588 Msa1385000:intron 45.0%
CTCCGCTCATAACTTAATGC+TGG - tig0020703:18746-18765 Msa1385000:intron 45.0%
TTGTACAGGGACTTTGGATG+TGG - tig0020703:18771-18790 Msa1385000:intron 45.0%
TGTACAGGGACTTTGGATGT+GGG - tig0020703:18772-18791 Msa1385000:intron 45.0%
!! AATTTAACAAATATTATTTA+TGG - tig0020703:13328-13347 Msa1385000:intron 5.0%
AGAGCGTGGTGCGCTTTATA+CGG - tig0020703:12763-12782 Msa1385000:three_prime_UTR 50.0%
! ATCGCGTTTGGAGTTTGCGA+TGG - tig0020703:12950-12969 Msa1385000:three_prime_UTR 50.0%
CGCTTTCCGATGAACAGATC+TGG - tig0020703:13039-13058 Msa1385000:three_prime_UTR 50.0%
TAGGGAGGCTGGATTTGATG+AGG - tig0020703:13070-13089 Msa1385000:three_prime_UTR 50.0%
TAGTTGGGCCGTAAAGATGG+TGG - tig0020703:13410-13429 Msa1385000:intron 50.0%
AGTTGGGCCGTAAAGATGGT+GGG - tig0020703:13411-13430 Msa1385000:intron 50.0%
CCGAGTTCCCACCATCTTTA+CGG + tig0020703:13421-13440 None:intergenic 50.0%
!! CCGTAAAGATGGTGGGAACT+CGG - tig0020703:13418-13437 Msa1385000:intron 50.0%
TTAGCCGACCTCACTAAGTG+GGG - tig0020703:13609-13628 Msa1385000:intron 50.0%
CTTACCCCACTTAGTGAGGT+CGG + tig0020703:13616-13635 None:intergenic 50.0%
TCATGCGGCGTGTTCCTTAT+AGG - tig0020703:13673-13692 Msa1385000:CDS 50.0%
AGCATGGACCGGAACTGATT+AGG + tig0020703:13999-14018 None:intergenic 50.0%
TGACCATGAAAGCTAAGGCG+TGG + tig0020703:14451-14470 None:intergenic 50.0%
TGGGCCTTCTCATATTGGAG+AGG - tig0020703:14716-14735 Msa1385000:CDS 50.0%
GGCGTCAAAGATGCATGCAT+AGG - tig0020703:14877-14896 Msa1385000:CDS 50.0%
TTCCGTACGCATCTCATGCA+AGG + tig0020703:15063-15082 None:intergenic 50.0%
AAGCGCGTGAAGATATCCTC+AGG - tig0020703:15255-15274 Msa1385000:CDS 50.0%
TCATCACAGCTGTGAGAGAC+GGG + tig0020703:15442-15461 None:intergenic 50.0%
ATCCTCGCTCAACCAAAGAG+AGG - tig0020703:15552-15571 Msa1385000:CDS 50.0%
ATCCTCTCTTTGGTTGAGCG+AGG + tig0020703:15557-15576 None:intergenic 50.0%
!!! GGCTGGTTTTCTTGTCATGG+AGG + tig0020703:15666-15685 None:intergenic 50.0%
AACCAGCCTACAACTACTGG+AGG - tig0020703:15678-15697 Msa1385000:CDS 50.0%
GAGACGAGCTTGGGAATTGA+AGG - tig0020703:16172-16191 Msa1385000:CDS 50.0%
ACGAGCTTGGGAATTGAAGG+AGG - tig0020703:16175-16194 Msa1385000:CDS 50.0%
GGAGGACCAAATCCTGGAAA+GGG - tig0020703:16214-16233 Msa1385000:intron 50.0%
CCAACTCATGTTCCCTTTCC+AGG + tig0020703:16229-16248 None:intergenic 50.0%
CCTGGAAAGGGAACATGAGT+TGG - tig0020703:16226-16245 Msa1385000:intron 50.0%
GAGCAGTTGACAGTTCCACT+AGG + tig0020703:16289-16308 None:intergenic 50.0%
! AAGCCTCAAAGCGTCTGAGA+AGG - tig0020703:16325-16344 Msa1385000:intron 50.0%
ACTCCTTCTCAGACGCTTTG+AGG + tig0020703:16331-16350 None:intergenic 50.0%
GCAGGAGTCTTTGGCATCTT+TGG - tig0020703:16415-16434 Msa1385000:CDS 50.0%
! GGGGTTACTTGCTAGTGAAC+GGG - tig0020703:16775-16794 Msa1385000:CDS 50.0%
TGGCACATGAACATGCTGAG+TGG - tig0020703:16816-16835 Msa1385000:intron 50.0%
CTTCCCGCCTCTTCTCAATA+AGG + tig0020703:16913-16932 None:intergenic 50.0%
! TGGCGTTCTTCTGAAAAGGC+AGG + tig0020703:17757-17776 None:intergenic 50.0%
AAGAACGCCAAGTAGGCAGA+GGG - tig0020703:17767-17786 Msa1385000:intron 50.0%
! CTCTTTTCCCTCTGCCTACT+TGG + tig0020703:17777-17796 None:intergenic 50.0%
CAAGTAGGCAGAGGGAAAAG+AGG - tig0020703:17775-17794 Msa1385000:intron 50.0%
TTCTGCGCCAGATCTACAAG+TGG + tig0020703:17832-17851 None:intergenic 50.0%
GCCATTCGTTCTTCTGCTCT+TGG + tig0020703:17862-17881 None:intergenic 50.0%
TAGATCAGGCCACTACCTAC+TGG - tig0020703:17893-17912 Msa1385000:intron 50.0%
TCAGAGATTCAGCAGGTGTC+AGG - tig0020703:18366-18385 Msa1385000:intron 50.0%
!! CTGGCTTTGTACAGGGACTT+TGG - tig0020703:18765-18784 Msa1385000:intron 50.0%
!! TGGATGTGGGCATTGGTAGT+TGG - tig0020703:18785-18804 Msa1385000:intron 50.0%
TGTTGATGCTGTACTGGGCT+AGG - tig0020703:19419-19438 Msa1385000:five_prime_UTR 50.0%
GACAGAGGTTTGGCAGAGCT+AGG + tig0020703:12987-13006 None:intergenic 55.0%
GATCTGGAAACGGCTTAGGG+AGG - tig0020703:13055-13074 Msa1385000:three_prime_UTR 55.0%
!! AGATGGTGGGAACTCGGCAT+CGG - tig0020703:13424-13443 Msa1385000:intron 55.0%
!! GAACTCGGCATCGGTGGTTT+GGG - tig0020703:13433-13452 Msa1385000:three_prime_UTR 55.0%
ACAAATGGCTGCAGATCCGC+AGG + tig0020703:13789-13808 None:intergenic 55.0%
GGCCTTGCATGAGATGCGTA+CGG - tig0020703:15058-15077 Msa1385000:CDS 55.0%
CGCGTGAAGATATCCTCAGG+CGG - tig0020703:15258-15277 Msa1385000:CDS 55.0%
GCTGTGAGAGACGGGAAAGA+GGG + tig0020703:15434-15453 None:intergenic 55.0%
AGCTGTGAGAGACGGGAAAG+AGG + tig0020703:15435-15454 None:intergenic 55.0%
ACAACGGGAGGACCAAATCC+TGG - tig0020703:16208-16227 Msa1385000:intron 55.0%
GGGAGGACCAAATCCTGGAA+AGG - tig0020703:16213-16232 Msa1385000:intron 55.0%
! GTGGTTTGGCAAGATGCAGC+AGG - tig0020703:16835-16854 Msa1385000:intron 55.0%
!! AGGAGCGAGCGGATTTTCAG+CGG - tig0020703:16855-16874 Msa1385000:intron 55.0%
TGAGAAGAGGCGGGAAGAAG+TGG - tig0020703:16916-16935 Msa1385000:intron 55.0%
GAGAATCGAGCAGCACTAGC+AGG + tig0020703:17460-17479 None:intergenic 55.0%
! CTAGTGCTGCTCGATTCTCC+TGG - tig0020703:17461-17480 Msa1385000:CDS 55.0%
GAAGAACGCCAAGTAGGCAG+AGG - tig0020703:17766-17785 Msa1385000:intron 55.0%
GGGACTTTGGATGTGGGCAT+TGG - tig0020703:18778-18797 Msa1385000:intron 55.0%
! GCTTTTGGCACAATGCTGGG+TGG - tig0020703:19238-19257 Msa1385000:CDS 55.0%
TGGAAACGGCTTAGGGAGGC+TGG - tig0020703:13059-13078 Msa1385000:three_prime_UTR 60.0%
!! GGAACTCGGCATCGGTGGTT+TGG - tig0020703:13432-13451 Msa1385000:three_prime_UTR 60.0%
GGCCTCCAGTAGTTGTAGGC+TGG + tig0020703:15683-15702 None:intergenic 60.0%
GGGTGGCCTCCAGTAGTTGT+AGG + tig0020703:15687-15706 None:intergenic 60.0%
CAAGATGCAGCAGGAGCGAG+CGG - tig0020703:16844-16863 Msa1385000:intron 60.0%
!! GGAGCGAGCGGATTTTCAGC+GGG - tig0020703:16856-16875 Msa1385000:intron 60.0%
! TGGTGGGAACTCGGCATCGG+TGG - tig0020703:13427-13446 Msa1385000:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0020703 gene 12756 19511 12756 ID=Msa1385000;Name=Msa1385000
tig0020703 mRNA 12756 19511 12756 ID=Msa1385000-mRNA-1;Parent=Msa1385000;Name=Msa1385000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=213|1|1|1|0.75|0.77|9|596|1056
tig0020703 exon 12756 13288 12756 ID=Msa1385000-mRNA-1:exon:9400;Parent=Msa1385000-mRNA-1
tig0020703 exon 13426 13488 13426 ID=Msa1385000-mRNA-1:exon:9399;Parent=Msa1385000-mRNA-1
tig0020703 exon 13620 13926 13620 ID=Msa1385000-mRNA-1:exon:9398;Parent=Msa1385000-mRNA-1
tig0020703 exon 14353 16211 14353 ID=Msa1385000-mRNA-1:exon:9397;Parent=Msa1385000-mRNA-1
tig0020703 exon 16360 16443 16360 ID=Msa1385000-mRNA-1:exon:9396;Parent=Msa1385000-mRNA-1
tig0020703 exon 16544 16814 16544 ID=Msa1385000-mRNA-1:exon:9395;Parent=Msa1385000-mRNA-1
tig0020703 exon 16964 17217 16964 ID=Msa1385000-mRNA-1:exon:9394;Parent=Msa1385000-mRNA-1
tig0020703 exon 17364 17573 17364 ID=Msa1385000-mRNA-1:exon:9393;Parent=Msa1385000-mRNA-1
tig0020703 exon 19113 19511 19113 ID=Msa1385000-mRNA-1:exon:9392;Parent=Msa1385000-mRNA-1
tig0020703 five_prime_UTR 19299 19511 19299 ID=Msa1385000-mRNA-1:five_prime_utr;Parent=Msa1385000-mRNA-1
tig0020703 CDS 19113 19298 19113 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 17364 17573 17364 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 16964 17217 16964 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 16544 16814 16544 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 16360 16443 16360 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 14353 16211 14353 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 CDS 13620 13926 13620 ID=Msa1385000-mRNA-1:cds;Parent=Msa1385000-mRNA-1
tig0020703 three_prime_UTR 13426 13488 13426 ID=Msa1385000-mRNA-1:three_prime_utr;Parent=Msa1385000-mRNA-1
tig0020703 three_prime_UTR 12756 13288 12756 ID=Msa1385000-mRNA-1:three_prime_utr;Parent=Msa1385000-mRNA-1
Gene Sequence

>Msa1385000

ATGGAGATTTCGACACCTAGCTCTGCCAAACCTCTGTCAATTACTCCGAGTTCTAGGGTTTTGAGAAGTCCGCTTTCCGATGAACAGATCTGGAAACGGCTTAGGGAGGCTGGATTTGATGAGGAATCGATTAAGCATAAGGATAAAGCTGCGCTTGTAGCTTATATTGCTAAGCTTGAAGCTGAGATATATGATCATCAACATCATATGGGCCTTCTCATATTGGAGAGGAAGGAATTGGTTTCCAAGTATGAACATGTTAAAACCATGGTCGAGTCATCTGAGTTAGTGCATAACCGTGATTTATCCATGAATAAATCTGCGTTAGCTGAATCAAGAAAACGGGAAGAATCTTTGAAGAAGACAATAGGCGTCAAAGATGCATGCATAGGAAGTCTTGAGAAGGCCTTGCATGAGATGCGTACGGAATGTGCTGAAACAAAGGTTGCAGCTGAAAGTAAATTAGCTGAAGCACATCAATTGACAGATGAAGCAGAAAAGAAATTTACGGAGGCTGAAGCTAAAGTGCGTGCTGCAGAATCTTTGCAAGCAGATGCTAATCGATATAACAGTGTTGCAGAAAGGAAGCTTCGTGATGTTGAAGCGCGTGAAGATATCCTCAGGCGGCAAATTATATCTTTCAAGTCAGACTGTGATGAAAAAGATAAGGAGATGAATCTTGAGAGGCAATCCCTTTCTGAAAGGCAAAAGGTTTTACAACAAGAACAGGAAAGGTTACTTCAATCACAATCCTCGCTCAACCAAAGAGAGGATCATCTTTTTAGTAGATCCCAGGAATTAGATCGTCTTCAAAAAGAGTTGGAGGACACAAAGTTTAAACTTGAAAAGGAAAATGAAGCCCTCCATGACAAGAAAACCAGCCTACAACTACTGGAGGCCACCCTTACACAACAAGAACAGGCACTCACTAAATGGAAAACTGAGCTTAACAAGAAAGAGCAAGAGTTGCTTGAATTTGAAGTGAAACTTTCTAATAGAGAATCTGATGAAACTCAGAAGGCTATAGCAGATCGGGAAGCCACAATGAGAGCAAAAAAACATGATTTAGAAGTTGAGCTACAAATGCAGCGCAAATCGGTTGAAAATGAAATTGAGACTAAGAGACGAGCTTGGGAATTGAAGGAGGTTGATCTTAAACAACGGGAGGACCAAATCCTGGAAAGGGAACATGAGTTGGAAGTTCTATCAAGATCACTGAGTGAGAAGGAGAAAGACCTAGTGGAACTGTCAACTGCTCTTAAAGATAAAGATCAAAGCCTCAAAGCGTCTGAGAAGGAGTTTGAATTAAACACAACCCTTTTGCAAAAGGAGAAAGATGATATTGAACAAGCCAAGAAAGATCTGCAGGAGTCTTTGGCATCTTTGGAAAATGAAAAAAGACAAGTTGATAACGCAAAGCAGAGATTGGAGGTCATCCAAAGTGAAACAGGCGACTTGTCAATTTTTGAAGTGAAACTAAAGGAAGAGATTGATCTTGTAAGATCTCAGAATTTGGAGCTATTGGCTGAGGCTGATAAGTTGAAAGCTGAGAAGGCCAAGTTTGAAGTTGAGTGGGAGCTTCTTGATGAAAAAAAAGAAGAGTTGCGGAAAGAAGCAGAATTTATAGAAAATGAAAGGAAGGCAGTTTCCACTTTTATTAAGAATGAGCGCGACAAGCTAAGAGAAGAAAAGGAAAATTTGCGTAAACAGTACACCCATGACTTGGGGTTACTTGCTAGTGAACGGGAAAATTTCATGAAGAAGATGGCACATGAACATGCTGAGTGGTTTGGCAAGATGCAGCAGGAGCGAGCGGATTTTCAGCGGGATATTGAGATGCAAAAAAGGGAGCTAAATAACCTTATTGAGAAGAGGCGGGAAGAAGTGGAAAGTTATTTGAAGGAAAGAGAAACAGCTTTTGAGGAAGAGAAGAATAGGGAGCTCCAGCATATTGATGCTCTTAAGGAGAAAGCTGCAAAAGAATTGGAACAGGTTTCCTTGGAGATGAAAAGGCTTCAAACTGAGCGGACTGAGATAAATTTGGATCGTGACCTAAGAAATAGAGAATGGGCTGAACTAAATAATTGTATTAAAGAACTTGAGGTTCAAAGGGATAAACTACAAAAACAGAGAGAACTGTTGCATGCTGATAGAATCAACATTTATTCTAAGACTGAAGAATTGAAGAAATTGGAAGATTCAAAAGTTGTCTCTGATGACCTTGCTATTGTTGAAATGCTTAAATCTGATATGGAGTATAACCAACAGAAAATATCTTCAAGGAAAAATTTGAAGCATCAGACTCTTACACAAGGTGGCCGCTTGAGTTCCTGCAAAGATGTGGATGTTGATAACATTGGCAATGGGTTTGATACTCCATTTGTGCAGAAGTCATCAGGTGTTTCTCCTGCTAGTGCTGCTCGATTCTCCTGGATAAAACGATGCACAGAGCTAATATTCCGAAATTCTCCTGATACGCCACTCACGAAAAAAGGAAATTTGGCTGTGGCTTCTGATACAAATAATGGTAGCAATGGGCAAAAGCACTTGGAAAATGACAAGCCACTTGGTAATTTTAGTAATGGACGGCAAATGGGGTTTTCTTTTGGAGAACCAAAAGTAATTGTTGAAGTACCCTCTCTAGATGGAAATGCTAGCAGAACAAGCGAGCTCAAATCTGTGACTAAAGATGTTAATGGGAAACCTGCCTTTTCAGAAGAACGCCAAGTAGGCAGAGGGAAAAGAGGCAGAGAGAACTTGATTACTAAAGTTGCTGATCCACTTGTAGATCTGGCGCAGAATAAGAAACCAAGAGCAGAAGAACGAATGGCCAAAAATCCTTTAGATCAGGCCACTACCTACTGTGTGCATTCAACCCAGTCAGATATATCAGAGATTCAGCAGGTGTCAGGTGCTTCAAATCATAAAAAAGGGAACACCGAAGAAGCTCGTGTAGTAATGGTTGATAAGGTTATTCATGTTTCAGAAGTGACTTCTGAAAAAGTTGATACTCTCATCATTCCCAATCAAGATAATCTGCACAGAGAAACAATCGATCAGTCAAACTCTAAAACTAGATCCGAAGAAATTTTGCCTTGTGGTTCTAGTGTATTGGAGAACACAGAAGGAATACGGCAAGAAAACACTGAACCTGTTTCCGATTACTGTTAG

Protein sequence

>Msa1385000

MEISTPSSAKPLSITPSSRVLRSPLSDEQIWKRLREAGFDEESIKHKDKAALVAYIAKLEAEIYDHQHHMGLLILERKELVSKYEHVKTMVESSELVHNRDLSMNKSALAESRKREESLKKTIGVKDACIGSLEKALHEMRTECAETKVAAESKLAEAHQLTDEAEKKFTEAEAKVRAAESLQADANRYNSVAERKLRDVEAREDILRRQIISFKSDCDEKDKEMNLERQSLSERQKVLQQEQERLLQSQSSLNQREDHLFSRSQELDRLQKELEDTKFKLEKENEALHDKKTSLQLLEATLTQQEQALTKWKTELNKKEQELLEFEVKLSNRESDETQKAIADREATMRAKKHDLEVELQMQRKSVENEIETKRRAWELKEVDLKQREDQILEREHELEVLSRSLSEKEKDLVELSTALKDKDQSLKASEKEFELNTTLLQKEKDDIEQAKKDLQESLASLENEKRQVDNAKQRLEVIQSETGDLSIFEVKLKEEIDLVRSQNLELLAEADKLKAEKAKFEVEWELLDEKKEELRKEAEFIENERKAVSTFIKNERDKLREEKENLRKQYTHDLGLLASERENFMKKMAHEHAEWFGKMQQERADFQRDIEMQKRELNNLIEKRREEVESYLKERETAFEEEKNRELQHIDALKEKAAKELEQVSLEMKRLQTERTEINLDRDLRNREWAELNNCIKELEVQRDKLQKQRELLHADRINIYSKTEELKKLEDSKVVSDDLAIVEMLKSDMEYNQQKISSRKNLKHQTLTQGGRLSSCKDVDVDNIGNGFDTPFVQKSSGVSPASAARFSWIKRCTELIFRNSPDTPLTKKGNLAVASDTNNGSNGQKHLENDKPLGNFSNGRQMGFSFGEPKVIVEVPSLDGNASRTSELKSVTKDVNGKPAFSEERQVGRGKRGRENLITKVADPLVDLAQNKKPRAEERMAKNPLDQATTYCVHSTQSDISEIQQVSGASNHKKGNTEEARVVMVDKVIHVSEVTSEKVDTLIIPNQDNLHRETIDQSNSKTRSEEILPCGSSVLENTEGIRQENTEPVSDYC*