Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171960 | GAU46583.1 | 99.487 | 195 | 1 | 0 | 1 | 195 | 347 | 541 | 1.46e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171960 | sp|Q9FL12|DEGP9_ARATH | 80.513 | 195 | 38 | 0 | 1 | 195 | 394 | 588 | 3.22e-104 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171960 | A0A2Z6NWA2 | 99.487 | 195 | 1 | 0 | 1 | 195 | 347 | 541 | 6.98e-136 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1171960 | Msa1266060 | 0.810537 | 1.097041e-50 | -8.615850e-47 |
| Msa1171960 | Msa1298620 | 0.843211 | 1.610523e-58 | -8.615850e-47 |
| Msa1171960 | Msa1362790 | 0.804791 | 1.823628e-49 | -8.615850e-47 |
| Msa1171960 | Msa1410440 | 0.807132 | 5.869050e-50 | -8.615850e-47 |
| Msa0867060 | Msa1171960 | 0.809623 | 1.726702e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171960 | MtrunA17_Chr4g0059321 | 99.487 | 195 | 1 | 0 | 1 | 195 | 396 | 590 | 8.19e-139 | 400 |
| Msa1171960 | MtrunA17_Chr6g0448981 | 43.523 | 193 | 108 | 1 | 1 | 193 | 346 | 537 | 1.59e-49 | 168 |
| Msa1171960 | MtrunA17_Chr1g0196111 | 39.378 | 193 | 113 | 1 | 1 | 193 | 242 | 430 | 1.53e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171960 | AT5G40200.1 | 80.513 | 195 | 38 | 0 | 1 | 195 | 394 | 588 | 3.27e-105 | 314 |
| Msa1171960 | AT5G36950.1 | 43.814 | 194 | 107 | 2 | 1 | 193 | 378 | 570 | 8.87e-45 | 156 |
| Msa1171960 | AT2G47940.2 | 40.933 | 193 | 110 | 1 | 1 | 193 | 382 | 570 | 7.46e-42 | 149 |
| Msa1171960 | AT2G47940.1 | 40.933 | 193 | 110 | 1 | 1 | 193 | 383 | 571 | 7.53e-42 | 149 |
| Msa1171960 | AT1G65630.1 | 38.342 | 193 | 108 | 1 | 2 | 194 | 361 | 542 | 4.07e-32 | 121 |
| Msa1171960 | AT1G65640.2 | 39.572 | 187 | 97 | 2 | 2 | 188 | 339 | 509 | 6.36e-32 | 120 |
| Msa1171960 | AT3G16540.1 | 36.269 | 193 | 97 | 1 | 1 | 193 | 364 | 530 | 8.54e-29 | 112 |
| Msa1171960 | AT3G16550.1 | 35.294 | 187 | 101 | 1 | 6 | 192 | 333 | 499 | 1.01e-25 | 103 |
| Msa1171960 | AT5G40560.1 | 35.789 | 190 | 98 | 3 | 6 | 195 | 309 | 474 | 3.03e-23 | 96.3 |
| Msa1171960 | AT1G65640.1 | 35.780 | 109 | 59 | 1 | 2 | 110 | 339 | 436 | 6.20e-13 | 66.6 |
Find 32 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTCCAGTCAAGATTT+TGG | 0.209977 | 8_1:+1890836 | Msa1171960:CDS |
| CCCTCATATTATATCATTGC+AGG | 0.292872 | 8_1:+1890483 | Msa1171960:CDS |
| AAATTCAATATTAAACTTGA+TGG | 0.313467 | 8_1:+1890420 | Msa1171960:CDS |
| GGCTTGCCCTTGCTGTGTGC+TGG | 0.318695 | 8_1:-1890459 | None:intergenic |
| CTCATATCACAGAAATATAC+TGG | 0.394005 | 8_1:+1890354 | Msa1171960:CDS |
| TTAAACTTGATGGTCATAGA+AGG | 0.395091 | 8_1:+1890430 | Msa1171960:CDS |
| ATTACAACAAGTTGTTCATC+TGG | 0.408369 | 8_1:-1890888 | None:intergenic |
| TCCTGCAATGATATAATATG+AGG | 0.430469 | 8_1:-1890484 | None:intergenic |
| ATGCGCTCTCCATGGCGAAA+TGG | 0.455675 | 8_1:-1890318 | None:intergenic |
| TCTGTATTTCTGAAGGTCGT+TGG | 0.456981 | 8_1:+1891145 | Msa1171960:intron |
| ACAACTTGTTGTAATTTCTC+AGG | 0.458392 | 8_1:+1890896 | Msa1171960:CDS |
| CAAACCTCAGAACGAAGATA+AGG | 0.514741 | 8_1:-1890531 | None:intergenic |
| TCTTAAGAGCTTGGCCGCAA+TGG | 0.525473 | 8_1:+1891192 | Msa1171960:CDS |
| ATTTGATTTAGATTATGAGC+AGG | 0.539800 | 8_1:+1891243 | Msa1171960:CDS |
| GGTTCCTTATCTTCGTTCTG+AGG | 0.546360 | 8_1:+1890527 | Msa1171960:CDS |
| TTTCGCCATGGAGAGCGCAT+TGG | 0.546950 | 8_1:+1890321 | Msa1171960:CDS |
| AGTTTATCCAAAATCTTGAC+TGG | 0.552356 | 8_1:-1890843 | None:intergenic |
| AGATCGTCAGACATTGCTGA+TGG | 0.570063 | 8_1:-1891412 | Msa1171970:three_prime_UTR |
| GCTTATTCCAGCACACAGCA+AGG | 0.586438 | 8_1:+1890452 | Msa1171960:CDS |
| TGAAACCAATGCGCTCTCCA+TGG | 0.591141 | 8_1:-1890326 | None:intergenic |
| CCTGCAATGATATAATATGA+GGG | 0.598553 | 8_1:-1890483 | None:intergenic |
| AGTTGTTCATCTGGTGATTG+TGG | 0.604082 | 8_1:-1890879 | None:intergenic |
| TTTCCAGTTCCATTTCGCCA+TGG | 0.606699 | 8_1:+1890309 | None:intergenic |
| CTTATTCCAGCACACAGCAA+GGG | 0.624783 | 8_1:+1890453 | Msa1171960:CDS |
| TTGACACATATAGGTGCTGG+TGG | 0.631847 | 8_1:+1890989 | Msa1171960:intron |
| CATGTATAAACAGTACGGGA+AGG | 0.634604 | 8_1:+1890803 | Msa1171960:intron |
| ATCACAGCTCTCTACCATTG+CGG | 0.652168 | 8_1:-1891206 | None:intergenic |
| ATGCAGCAATCAAAGTATTG+CGG | 0.658146 | 8_1:+1890382 | Msa1171960:CDS |
| TGAAGAGATCGTTAACACCC+AGG | 0.659316 | 8_1:+1891031 | Msa1171960:CDS |
| CTGGTGGCTGATATTAACAT+CGG | 0.661404 | 8_1:+1891005 | Msa1171960:CDS |
| TGTTGCAAGAATATCTAGCG+TGG | 0.690556 | 8_1:-1891380 | Msa1171970:three_prime_UTR |
| GCAATGATATAATATGAGGG+AGG | 0.693321 | 8_1:-1890480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTTACTTTACTTT+TGG | + | chr8_1:1890706-1890725 | Msa1171960:intron | 10.0% |
| !!! | TTTATATTTTACTTTACTTT+TGG | + | chr8_1:1890706-1890725 | Msa1171960:intron | 10.0% |
| !! | AAATTCAATATTAAACTTGA+TGG | + | chr8_1:1890420-1890439 | Msa1171960:CDS | 15.0% |
| !! | AAATTCAATATTAAACTTGA+TGG | + | chr8_1:1890420-1890439 | Msa1171960:CDS | 15.0% |
| !! | AAATTGAGTTAGAAAAGAAT+GGG | - | chr8_1:1890781-1890800 | None:intergenic | 20.0% |
| !! | AAAATTGAGTTAGAAAAGAA+TGG | - | chr8_1:1890782-1890801 | None:intergenic | 20.0% |
| !!! | TTTTTCATGTATAAACAGTA+CGG | + | chr8_1:1890798-1890817 | Msa1171960:intron | 20.0% |
| !! | AAATTGAGTTAGAAAAGAAT+GGG | - | chr8_1:1890781-1890800 | None:intergenic | 20.0% |
| !! | AAAATTGAGTTAGAAAAGAA+TGG | - | chr8_1:1890782-1890801 | None:intergenic | 20.0% |
| !!! | TTTTTCATGTATAAACAGTA+CGG | + | chr8_1:1890798-1890817 | Msa1171960:intron | 20.0% |
| !!! | ATTTGTTTTTTCAACGGTTT+CGG | + | chr8_1:1890506-1890525 | Msa1171960:CDS | 25.0% |
| !!! | ATTAGTTTTTCGTAGAATTC+TGG | + | chr8_1:1890561-1890580 | Msa1171960:intron | 25.0% |
| ! | ATATAAAGCTGCATATTACA+AGG | - | chr8_1:1890667-1890686 | None:intergenic | 25.0% |
| ! | ATATAAAGCTGCATATAACA+AGG | - | chr8_1:1890693-1890712 | None:intergenic | 25.0% |
| !! | TTTTCATGTATAAACAGTAC+GGG | + | chr8_1:1890799-1890818 | Msa1171960:intron | 25.0% |
| !!! | CATATTTTTGTTTTCCATGT+TGG | + | chr8_1:1891072-1891091 | Msa1171960:intron | 25.0% |
| !!! | AAGCTCTTAAGATTTTTTAC+AGG | - | chr8_1:1891184-1891203 | None:intergenic | 25.0% |
| ! | TGTAAAAAATCTTAAGAGCT+TGG | + | chr8_1:1891183-1891202 | Msa1171960:CDS | 25.0% |
| !! | ATTTGATTTAGATTATGAGC+AGG | + | chr8_1:1891243-1891262 | Msa1171960:CDS | 25.0% |
| !!! | ATTTGTTTTTTCAACGGTTT+CGG | + | chr8_1:1890506-1890525 | Msa1171960:CDS | 25.0% |
| !!! | ATTAGTTTTTCGTAGAATTC+TGG | + | chr8_1:1890561-1890580 | Msa1171960:intron | 25.0% |
| ! | ATATAAAGCTGCATATTACA+AGG | - | chr8_1:1890667-1890686 | None:intergenic | 25.0% |
| ! | ATATAAAGCTGCATATAACA+AGG | - | chr8_1:1890693-1890712 | None:intergenic | 25.0% |
| !! | TTTTCATGTATAAACAGTAC+GGG | + | chr8_1:1890799-1890818 | Msa1171960:intron | 25.0% |
| !!! | CATATTTTTGTTTTCCATGT+TGG | + | chr8_1:1891072-1891091 | Msa1171960:intron | 25.0% |
| !!! | AAGCTCTTAAGATTTTTTAC+AGG | - | chr8_1:1891184-1891203 | None:intergenic | 25.0% |
| ! | TGTAAAAAATCTTAAGAGCT+TGG | + | chr8_1:1891183-1891202 | Msa1171960:CDS | 25.0% |
| !! | ATTTGATTTAGATTATGAGC+AGG | + | chr8_1:1891243-1891262 | Msa1171960:CDS | 25.0% |
| CTCATATCACAGAAATATAC+TGG | + | chr8_1:1890354-1890373 | Msa1171960:CDS | 30.0% | |
| ! | TTAAACTTGATGGTCATAGA+AGG | + | chr8_1:1890430-1890449 | Msa1171960:CDS | 30.0% |
| CCTGCAATGATATAATATGA+GGG | - | chr8_1:1890486-1890505 | None:intergenic | 30.0% | |
| TCCTGCAATGATATAATATG+AGG | - | chr8_1:1890487-1890506 | None:intergenic | 30.0% | |
| !!! | TGCAGGATTTGTTTTTTCAA+CGG | + | chr8_1:1890500-1890519 | Msa1171960:CDS | 30.0% |
| AGTTTATCCAAAATCTTGAC+TGG | - | chr8_1:1890846-1890865 | None:intergenic | 30.0% | |
| ATTACAACAAGTTGTTCATC+TGG | - | chr8_1:1890891-1890910 | None:intergenic | 30.0% | |
| !! | ACAACTTGTTGTAATTTCTC+AGG | + | chr8_1:1890896-1890915 | Msa1171960:CDS | 30.0% |
| AGAGATACTCAGATACAATA+AGG | - | chr8_1:1890969-1890988 | None:intergenic | 30.0% | |
| AGTATCTCTTTGACACATAT+AGG | + | chr8_1:1890980-1890999 | Msa1171960:intron | 30.0% | |
| GACAGATTGAGAAATAAAGA+CGG | - | chr8_1:1891270-1891289 | None:intergenic | 30.0% | |
| CTCATATCACAGAAATATAC+TGG | + | chr8_1:1890354-1890373 | Msa1171960:CDS | 30.0% | |
| ! | TTAAACTTGATGGTCATAGA+AGG | + | chr8_1:1890430-1890449 | Msa1171960:CDS | 30.0% |
| CCTGCAATGATATAATATGA+GGG | - | chr8_1:1890486-1890505 | None:intergenic | 30.0% | |
| TCCTGCAATGATATAATATG+AGG | - | chr8_1:1890487-1890506 | None:intergenic | 30.0% | |
| !!! | TGCAGGATTTGTTTTTTCAA+CGG | + | chr8_1:1890500-1890519 | Msa1171960:CDS | 30.0% |
| AGTTTATCCAAAATCTTGAC+TGG | - | chr8_1:1890846-1890865 | None:intergenic | 30.0% | |
| ATTACAACAAGTTGTTCATC+TGG | - | chr8_1:1890891-1890910 | None:intergenic | 30.0% | |
| !! | ACAACTTGTTGTAATTTCTC+AGG | + | chr8_1:1890896-1890915 | Msa1171960:CDS | 30.0% |
| AGAGATACTCAGATACAATA+AGG | - | chr8_1:1890969-1890988 | None:intergenic | 30.0% | |
| AGTATCTCTTTGACACATAT+AGG | + | chr8_1:1890980-1890999 | Msa1171960:intron | 30.0% | |
| GACAGATTGAGAAATAAAGA+CGG | - | chr8_1:1891270-1891289 | None:intergenic | 30.0% | |
| !! | ATGCAGCAATCAAAGTATTG+CGG | + | chr8_1:1890382-1890401 | Msa1171960:CDS | 35.0% |
| GCAATGATATAATATGAGGG+AGG | - | chr8_1:1890483-1890502 | None:intergenic | 35.0% | |
| CCCTCATATTATATCATTGC+AGG | + | chr8_1:1890483-1890502 | Msa1171960:CDS | 35.0% | |
| ! | ACAATATGCTTGCTAGAAGT+TGG | + | chr8_1:1890603-1890622 | Msa1171960:intron | 35.0% |
| ! | CAATATGCTTGCTAGAAGTT+GGG | + | chr8_1:1890604-1890623 | Msa1171960:intron | 35.0% |
| AAATTCGCTAAGCTTTCTTG+TGG | + | chr8_1:1890754-1890773 | Msa1171960:intron | 35.0% | |
| TACTCAGCAAAAACAGCAAA+AGG | - | chr8_1:1890946-1890965 | None:intergenic | 35.0% | |
| AACATTGCTCATATCAACCT+GGG | - | chr8_1:1891051-1891070 | None:intergenic | 35.0% | |
| AAACATTGCTCATATCAACC+TGG | - | chr8_1:1891052-1891071 | None:intergenic | 35.0% | |
| ! | TCTACTCTCTGTATTTCTGA+AGG | + | chr8_1:1891138-1891157 | Msa1171960:intron | 35.0% |
| CTAATCATCTATGCAGATAG+TGG | + | chr8_1:1891330-1891349 | Msa1171960:intron | 35.0% | |
| !! | ATGCAGCAATCAAAGTATTG+CGG | + | chr8_1:1890382-1890401 | Msa1171960:CDS | 35.0% |
| GCAATGATATAATATGAGGG+AGG | - | chr8_1:1890483-1890502 | None:intergenic | 35.0% | |
| CCCTCATATTATATCATTGC+AGG | + | chr8_1:1890483-1890502 | Msa1171960:CDS | 35.0% | |
| ! | ACAATATGCTTGCTAGAAGT+TGG | + | chr8_1:1890603-1890622 | Msa1171960:intron | 35.0% |
| ! | CAATATGCTTGCTAGAAGTT+GGG | + | chr8_1:1890604-1890623 | Msa1171960:intron | 35.0% |
| AAATTCGCTAAGCTTTCTTG+TGG | + | chr8_1:1890754-1890773 | Msa1171960:intron | 35.0% | |
| TACTCAGCAAAAACAGCAAA+AGG | - | chr8_1:1890946-1890965 | None:intergenic | 35.0% | |
| AACATTGCTCATATCAACCT+GGG | - | chr8_1:1891051-1891070 | None:intergenic | 35.0% | |
| AAACATTGCTCATATCAACC+TGG | - | chr8_1:1891052-1891071 | None:intergenic | 35.0% | |
| ! | TCTACTCTCTGTATTTCTGA+AGG | + | chr8_1:1891138-1891157 | Msa1171960:intron | 35.0% |
| CTAATCATCTATGCAGATAG+TGG | + | chr8_1:1891330-1891349 | Msa1171960:intron | 35.0% | |
| CAAACCTCAGAACGAAGATA+AGG | - | chr8_1:1890534-1890553 | None:intergenic | 40.0% | |
| CTTCTAGCAAGCATATTGTG+AGG | - | chr8_1:1890602-1890621 | None:intergenic | 40.0% | |
| CATGTATAAACAGTACGGGA+AGG | + | chr8_1:1890803-1890822 | Msa1171960:intron | 40.0% | |
| ! | TGAAGCTCCAGTCAAGATTT+TGG | + | chr8_1:1890836-1890855 | Msa1171960:CDS | 40.0% |
| AGTTGTTCATCTGGTGATTG+TGG | - | chr8_1:1890882-1890901 | None:intergenic | 40.0% | |
| TCTTTGACACATATAGGTGC+TGG | + | chr8_1:1890986-1891005 | Msa1171960:intron | 40.0% | |
| CTGGTGGCTGATATTAACAT+CGG | + | chr8_1:1891005-1891024 | Msa1171960:CDS | 40.0% | |
| ! | TCTGTATTTCTGAAGGTCGT+TGG | + | chr8_1:1891145-1891164 | Msa1171960:intron | 40.0% |
| !!! | CTGAAGGTCGTTGGTTTTAA+TGG | + | chr8_1:1891154-1891173 | Msa1171960:intron | 40.0% |
| GTCTTGCGTGCTTAGAAAAA+TGG | + | chr8_1:1891287-1891306 | Msa1171960:intron | 40.0% | |
| TGTTGCAAGAATATCTAGCG+TGG | - | chr8_1:1891383-1891402 | Msa1171970:three_prime_UTR | 40.0% | |
| CAAACCTCAGAACGAAGATA+AGG | - | chr8_1:1890534-1890553 | None:intergenic | 40.0% | |
| CTTCTAGCAAGCATATTGTG+AGG | - | chr8_1:1890602-1890621 | None:intergenic | 40.0% | |
| CATGTATAAACAGTACGGGA+AGG | + | chr8_1:1890803-1890822 | Msa1171960:intron | 40.0% | |
| ! | TGAAGCTCCAGTCAAGATTT+TGG | + | chr8_1:1890836-1890855 | Msa1171960:CDS | 40.0% |
| AGTTGTTCATCTGGTGATTG+TGG | - | chr8_1:1890882-1890901 | None:intergenic | 40.0% | |
| TCTTTGACACATATAGGTGC+TGG | + | chr8_1:1890986-1891005 | Msa1171960:intron | 40.0% | |
| CTGGTGGCTGATATTAACAT+CGG | + | chr8_1:1891005-1891024 | Msa1171960:CDS | 40.0% | |
| ! | TCTGTATTTCTGAAGGTCGT+TGG | + | chr8_1:1891145-1891164 | Msa1171960:intron | 40.0% |
| !!! | CTGAAGGTCGTTGGTTTTAA+TGG | + | chr8_1:1891154-1891173 | Msa1171960:intron | 40.0% |
| GTCTTGCGTGCTTAGAAAAA+TGG | + | chr8_1:1891287-1891306 | Msa1171960:intron | 40.0% | |
| TGTTGCAAGAATATCTAGCG+TGG | - | chr8_1:1891383-1891402 | Msa1171970:three_prime_UTR | 40.0% | |
| CTTATTCCAGCACACAGCAA+GGG | + | chr8_1:1890453-1890472 | Msa1171960:CDS | 45.0% | |
| GGTTCCTTATCTTCGTTCTG+AGG | + | chr8_1:1890527-1890546 | Msa1171960:CDS | 45.0% | |
| !! | TTGACACATATAGGTGCTGG+TGG | + | chr8_1:1890989-1891008 | Msa1171960:intron | 45.0% |
| TGAAGAGATCGTTAACACCC+AGG | + | chr8_1:1891031-1891050 | Msa1171960:CDS | 45.0% | |
| AGAGTTATCAGCGTCCAACA+TGG | - | chr8_1:1891089-1891108 | None:intergenic | 45.0% | |
| TGTTGGACGCTGATAACTCT+TGG | + | chr8_1:1891089-1891108 | Msa1171960:intron | 45.0% | |
| ATCACAGCTCTCTACCATTG+CGG | - | chr8_1:1891209-1891228 | None:intergenic | 45.0% | |
| AGATCGTCAGACATTGCTGA+TGG | - | chr8_1:1891415-1891434 | Msa1171970:three_prime_UTR | 45.0% | |
| CTTATTCCAGCACACAGCAA+GGG | + | chr8_1:1890453-1890472 | Msa1171960:CDS | 45.0% | |
| GGTTCCTTATCTTCGTTCTG+AGG | + | chr8_1:1890527-1890546 | Msa1171960:CDS | 45.0% | |
| !! | TTGACACATATAGGTGCTGG+TGG | + | chr8_1:1890989-1891008 | Msa1171960:intron | 45.0% |
| TGAAGAGATCGTTAACACCC+AGG | + | chr8_1:1891031-1891050 | Msa1171960:CDS | 45.0% | |
| AGAGTTATCAGCGTCCAACA+TGG | - | chr8_1:1891089-1891108 | None:intergenic | 45.0% | |
| TGTTGGACGCTGATAACTCT+TGG | + | chr8_1:1891089-1891108 | Msa1171960:intron | 45.0% | |
| ATCACAGCTCTCTACCATTG+CGG | - | chr8_1:1891209-1891228 | None:intergenic | 45.0% | |
| AGATCGTCAGACATTGCTGA+TGG | - | chr8_1:1891415-1891434 | Msa1171970:three_prime_UTR | 45.0% | |
| TGAAACCAATGCGCTCTCCA+TGG | - | chr8_1:1890329-1890348 | None:intergenic | 50.0% | |
| GCTTATTCCAGCACACAGCA+AGG | + | chr8_1:1890452-1890471 | Msa1171960:CDS | 50.0% | |
| TCTTAAGAGCTTGGCCGCAA+TGG | + | chr8_1:1891192-1891211 | Msa1171960:CDS | 50.0% | |
| ! | CTTTTGCAGTCTTCGTGCGA+AGG | - | chr8_1:1891357-1891376 | Msa1171970:three_prime_UTR | 50.0% |
| TGAAACCAATGCGCTCTCCA+TGG | - | chr8_1:1890329-1890348 | None:intergenic | 50.0% | |
| GCTTATTCCAGCACACAGCA+AGG | + | chr8_1:1890452-1890471 | Msa1171960:CDS | 50.0% | |
| TCTTAAGAGCTTGGCCGCAA+TGG | + | chr8_1:1891192-1891211 | Msa1171960:CDS | 50.0% | |
| ! | CTTTTGCAGTCTTCGTGCGA+AGG | - | chr8_1:1891357-1891376 | Msa1171970:three_prime_UTR | 50.0% |
| ATGCGCTCTCCATGGCGAAA+TGG | - | chr8_1:1890321-1890340 | None:intergenic | 55.0% | |
| ! | TTTCGCCATGGAGAGCGCAT+TGG | + | chr8_1:1890321-1890340 | Msa1171960:CDS | 55.0% |
| ATGCGCTCTCCATGGCGAAA+TGG | - | chr8_1:1890321-1890340 | None:intergenic | 55.0% | |
| ! | TTTCGCCATGGAGAGCGCAT+TGG | + | chr8_1:1890321-1890340 | Msa1171960:CDS | 55.0% |
| ! | GGCTTGCCCTTGCTGTGTGC+TGG | - | chr8_1:1890462-1890481 | None:intergenic | 65.0% |
| ! | GGCTTGCCCTTGCTGTGTGC+TGG | - | chr8_1:1890462-1890481 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1890318 | 1891444 | 1890318 | ID=Msa1171960;Name=Msa1171960 |
| chr8_1 | mRNA | 1890318 | 1891444 | 1890318 | ID=Msa1171960-mRNA-1;Parent=Msa1171960;Name=Msa1171960-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0.25|0|0.4|1|0.8|5|0|195 |
| chr8_1 | exon | 1890318 | 1890548 | 1890318 | ID=Msa1171960-mRNA-1:exon:726;Parent=Msa1171960-mRNA-1 |
| chr8_1 | exon | 1890816 | 1890917 | 1890816 | ID=Msa1171960-mRNA-1:exon:727;Parent=Msa1171960-mRNA-1 |
| chr8_1 | exon | 1891002 | 1891052 | 1891002 | ID=Msa1171960-mRNA-1:exon:728;Parent=Msa1171960-mRNA-1 |
| chr8_1 | exon | 1891160 | 1891264 | 1891160 | ID=Msa1171960-mRNA-1:exon:729;Parent=Msa1171960-mRNA-1 |
| chr8_1 | exon | 1891346 | 1891444 | 1891346 | ID=Msa1171960-mRNA-1:exon:730;Parent=Msa1171960-mRNA-1 |
| chr8_1 | CDS | 1890318 | 1890548 | 1890318 | ID=Msa1171960-mRNA-1:cds;Parent=Msa1171960-mRNA-1 |
| chr8_1 | CDS | 1890816 | 1890917 | 1890816 | ID=Msa1171960-mRNA-1:cds;Parent=Msa1171960-mRNA-1 |
| chr8_1 | CDS | 1891002 | 1891052 | 1891002 | ID=Msa1171960-mRNA-1:cds;Parent=Msa1171960-mRNA-1 |
| chr8_1 | CDS | 1891160 | 1891264 | 1891160 | ID=Msa1171960-mRNA-1:cds;Parent=Msa1171960-mRNA-1 |
| chr8_1 | CDS | 1891346 | 1891444 | 1891346 | ID=Msa1171960-mRNA-1:cds;Parent=Msa1171960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
