AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176370 MtrunA17_Chr8g0346551 97.398 269 5 1 7 273 1 269 0.0 538
Msa1176370 MtrunA17_Chr3g0127201 46.441 295 125 12 7 273 1 290 2.57e-69 216
Msa1176370 MtrunA17_Chr1g0188851 44.484 281 109 13 1 264 10 260 8.19e-53 173
Msa1176370 MtrunA17_Chr2g0326001 75.000 72 16 1 15 84 23 94 7.76e-34 124
Msa1176370 MtrunA17_Chr3g0117601 52.000 125 45 4 16 136 45 158 1.12e-30 117
Msa1176370 MtrunA17_Chr8g0374251 54.808 104 41 2 27 130 65 162 1.59e-30 116
Msa1176370 MtrunA17_Chr4g0031411 72.059 68 19 0 17 84 62 129 3.64e-30 115
Msa1176370 MtrunA17_Chr8g0367161 66.250 80 24 2 21 98 21 99 1.18e-29 114
Msa1176370 MtrunA17_Chr4g0010151 43.796 137 70 2 17 146 69 205 1.30e-29 114
Msa1176370 MtrunA17_Chr4g0030051 69.014 71 20 1 14 82 23 93 1.78e-29 112
Msa1176370 MtrunA17_Chr3g0126201 76.562 64 13 1 23 84 42 105 2.51e-29 113
Msa1176370 MtrunA17_Chr4g0047001 73.529 68 14 1 32 99 57 120 3.45e-29 114
Msa1176370 MtrunA17_Chr1g0177251 87.037 54 7 0 31 84 13 66 5.43e-29 111
Msa1176370 MtrunA17_Chr8g0374111 48.214 112 48 2 17 122 10 117 6.47e-29 109
Msa1176370 MtrunA17_Chr2g0328021 60.227 88 33 1 18 103 48 135 7.82e-29 111
Msa1176370 MtrunA17_Chr2g0282441 77.966 59 12 1 23 81 19 76 5.74e-28 109
Msa1176370 MtrunA17_Chr5g0411951 78.182 55 12 0 26 80 39 93 7.20e-28 109
Msa1176370 MtrunA17_Chr8g0341671 72.131 61 17 0 27 87 17 77 1.49e-27 105
Msa1176370 MtrunA17_Chr7g0223311 83.019 53 9 0 32 84 79 131 5.09e-27 107
Msa1176370 MtrunA17_Chr7g0237921 79.245 53 11 0 32 84 78 130 6.40e-27 107
Msa1176370 MtrunA17_Chr2g0282051 58.108 74 30 1 12 85 28 100 9.60e-27 105
Msa1176370 MtrunA17_Chr4g0047761 74.138 58 14 1 28 85 70 126 4.11e-26 104
Msa1176370 MtrunA17_Chr3g0092111 69.492 59 18 0 25 83 131 189 6.57e-26 105
Msa1176370 MtrunA17_Chr4g0042481 64.062 64 23 0 25 88 117 180 2.53e-25 104
Msa1176370 MtrunA17_Chr4g0061761 77.358 53 12 0 28 80 38 90 4.20e-25 101
Msa1176370 MtrunA17_Chr2g0308011 81.633 49 9 0 30 78 37 85 5.92e-25 99.0
Msa1176370 MtrunA17_Chr7g0217581 58.974 78 25 1 25 95 227 304 6.62e-25 103
Msa1176370 MtrunA17_Chr7g0254161 61.905 63 24 0 25 87 96 158 7.13e-25 102
Msa1176370 MtrunA17_Chr6g0460721 60.317 63 25 0 25 87 84 146 8.02e-25 101
Msa1176370 MtrunA17_Chr2g0282511 79.592 49 10 0 30 78 45 93 1.51e-24 100
Msa1176370 MtrunA17_Chr2g0283811 63.636 66 22 1 18 83 37 100 1.88e-24 96.3
Msa1176370 MtrunA17_Chr8g0355261 61.290 62 24 0 25 86 113 174 2.78e-24 101
Msa1176370 MtrunA17_Chr6g0460731 46.875 96 49 1 5 100 73 166 3.12e-24 100
Msa1176370 MtrunA17_Chr6g0453321 66.102 59 20 0 25 83 131 189 4.42e-24 100
Msa1176370 MtrunA17_Chr5g0417571 62.712 59 22 0 25 83 133 191 2.76e-23 97.1
Msa1176370 MtrunA17_Chr5g0417601 66.667 54 18 0 30 83 140 193 3.49e-21 92.0
Msa1176370 MtrunA17_Chr5g0417551 53.731 67 31 0 17 83 114 180 1.15e-20 90.1
Msa1176370 MtrunA17_Chr5g0417561 56.250 64 28 0 20 83 109 172 1.16e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176370 AT3G61850.5 51.228 285 80 20 22 273 54 312 5.60e-65 206
Msa1176370 AT3G61850.4 51.246 281 86 19 22 273 66 324 8.07e-65 206
Msa1176370 AT3G61850.2 48.905 274 75 17 22 273 54 284 1.18e-62 199
Msa1176370 AT3G61850.3 48.905 274 75 17 22 273 54 284 1.18e-62 199
Msa1176370 AT3G61850.1 48.889 270 81 16 22 273 66 296 2.07e-62 199
Msa1176370 AT2G46590.1 43.175 315 101 16 21 273 59 357 5.38e-53 176
Msa1176370 AT2G46590.2 43.175 315 101 16 21 273 71 369 9.43e-53 176
Msa1176370 AT4G24060.1 40.328 305 129 14 19 273 40 341 6.34e-45 155
Msa1176370 AT4G00940.1 36.842 247 130 5 24 268 62 284 6.76e-39 138
Msa1176370 AT4G00940.3 36.842 247 130 5 24 268 62 284 6.76e-39 138
Msa1176370 AT4G00940.2 36.842 247 130 5 24 268 62 284 6.76e-39 138
Msa1176370 AT1G64620.1 37.224 317 124 13 16 268 33 338 6.86e-38 137
Msa1176370 AT5G60200.1 48.780 123 57 2 16 136 41 159 7.28e-33 121
Msa1176370 AT3G55370.1 73.529 68 18 0 17 84 63 130 1.80e-31 119
Msa1176370 AT3G55370.3 73.529 68 18 0 17 84 108 175 1.95e-31 120
Msa1176370 AT3G55370.2 71.831 71 20 0 17 87 63 133 2.41e-31 119
Msa1176370 AT2G28510.1 55.357 112 46 2 28 136 46 156 3.20e-31 117
Msa1176370 AT3G45610.1 60.494 81 30 1 22 102 32 110 8.76e-30 112
Msa1176370 AT2G37590.1 75.410 61 15 0 24 84 83 143 1.06e-29 114
Msa1176370 AT1G51700.1 64.103 78 25 2 27 101 30 107 1.85e-29 110
Msa1176370 AT5G65590.1 64.935 77 23 1 24 100 35 107 2.25e-29 113
Msa1176370 AT3G52440.1 82.456 57 10 0 32 88 27 83 2.10e-28 109
Msa1176370 AT5G66940.1 74.138 58 15 0 27 84 29 86 2.19e-28 108
Msa1176370 AT3G52440.2 82.456 57 10 0 32 88 46 102 2.43e-28 109
Msa1176370 AT3G50410.1 74.138 58 15 0 27 84 27 84 3.49e-28 108
Msa1176370 AT5G02460.1 67.647 68 22 0 17 84 82 149 4.06e-28 111
Msa1176370 AT5G60850.1 58.333 84 30 1 28 111 49 127 1.12e-27 108
Msa1176370 AT3G21270.1 53.125 96 24 1 30 104 29 124 1.22e-27 106
Msa1176370 AT2G28810.2 68.182 66 20 1 17 81 63 128 1.75e-27 108
Msa1176370 AT2G28810.1 68.182 66 20 1 17 81 80 145 2.48e-27 108
Msa1176370 AT4G38000.1 64.474 76 24 2 16 89 25 99 2.53e-27 106
Msa1176370 AT1G07640.1 78.182 55 12 0 30 84 21 75 2.56e-27 107
Msa1176370 AT1G07640.2 78.182 55 12 0 30 84 77 131 2.81e-27 108
Msa1176370 AT1G07640.3 78.182 55 12 0 30 84 85 139 3.43e-27 108
Msa1176370 AT1G21340.1 71.212 66 16 1 22 84 27 92 4.39e-27 106
Msa1176370 AT1G28310.1 75.000 56 14 0 30 85 27 82 4.39e-27 107
Msa1176370 AT1G28310.2 75.000 56 14 0 30 85 51 106 7.32e-27 107
Msa1176370 AT1G69570.1 70.312 64 19 0 25 88 127 190 2.11e-26 107
Msa1176370 AT5G62940.1 85.714 49 7 0 32 80 75 123 5.49e-26 105
Msa1176370 AT4G21050.1 68.852 61 19 0 25 85 19 79 9.71e-26 101
Msa1176370 AT1G29160.1 61.765 68 26 0 16 83 48 115 1.13e-25 100
Msa1176370 AT2G34140.1 58.108 74 31 0 10 83 38 111 1.38e-25 99.8
Msa1176370 AT1G47655.1 76.923 52 12 0 28 79 27 78 3.74e-25 99.8
Msa1176370 AT5G39660.3 61.972 71 25 1 13 83 123 191 7.56e-25 103
Msa1176370 AT5G39660.1 61.972 71 25 1 13 83 123 191 7.56e-25 103
Msa1176370 AT5G39660.2 61.972 71 25 1 13 83 123 191 7.56e-25 103
Msa1176370 AT3G47500.1 66.102 59 20 0 25 83 105 163 4.65e-24 100
Msa1176370 AT5G62430.1 64.407 59 21 0 25 83 49 107 5.26e-24 98.6
Msa1176370 AT1G26790.1 66.102 59 20 0 25 83 106 164 8.66e-24 99.4
Msa1176370 AT4G21040.1 75.000 52 13 0 32 83 27 78 1.14e-23 96.3
Msa1176370 AT4G21080.1 71.154 52 15 0 32 83 27 78 1.60e-22 93.6
Msa1176370 AT4G21030.1 58.000 50 21 0 32 81 23 72 2.89e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTAATAACAATAATTT+AGG 0.092469 8_1:-8350990 Msa1176370:CDS
TTTACAATTGATGGAATTAA+TGG 0.156949 8_1:-8350900 Msa1176370:CDS
CCTTGCCTTGGACATGAATT+AGG 0.219906 8_1:+8351476 None:intergenic
TAGAAGAATAGGTGAATATT+AGG 0.224079 8_1:-8350295 Msa1176370:three_prime_UTR
AGTCTTGGATTTACAATTGA+TGG 0.273556 8_1:-8350909 Msa1176370:CDS
AGACAAATGATACCTATTAA+AGG 0.279065 8_1:+8350603 None:intergenic
AAGGAAATTCAACTGGATAT+TGG 0.307009 8_1:-8350740 Msa1176370:CDS
ATGCTAATAACAATAATTTA+GGG 0.313695 8_1:-8350989 Msa1176370:CDS
TCAAATGCTATTTATCCATC+TGG 0.339522 8_1:-8350957 Msa1176370:CDS
TTCTTCTCTAATCCTTGCCT+TGG 0.373577 8_1:+8351464 None:intergenic
AAATTATTGTTATTAGCATA+AGG 0.374908 8_1:+8350993 None:intergenic
GGATAAATAGCATTTGAGTT+TGG 0.376465 8_1:+8350963 None:intergenic
CATGTCTTGCAAAAGTATCT+TGG 0.386535 8_1:+8351353 None:intergenic
TTTAACTACTAACATAATAT+AGG 0.388806 8_1:+8350193 None:intergenic
AGTTGTTCAAAACTAACAAT+AGG 0.388982 8_1:-8350578 Msa1176370:three_prime_UTR
GCAAGACATGTAGAAGGTAT+TGG 0.389030 8_1:-8351340 Msa1176370:CDS
AAAGAAGAATTCATGAATAC+AGG 0.394951 8_1:+8350247 None:intergenic
TTGTATACAATTAATACCTT+TGG 0.396746 8_1:-8350362 Msa1176370:three_prime_UTR
ATGAAAGATGTGAAACTTGT+AGG 0.415991 8_1:+8351192 None:intergenic
CTTGTAGGGTTGGTGGATTT+AGG 0.422116 8_1:+8351207 None:intergenic
GATCAATGCACATGCACTAC+TGG 0.424715 8_1:-8350556 Msa1176370:three_prime_UTR
AGGGTTGGTGGATTTAGGTC+AGG 0.429516 8_1:+8351212 None:intergenic
GATCAACAAGGAAATTCAAC+TGG 0.430255 8_1:-8350747 Msa1176370:CDS
GGACAATTTATTTGCTCTTG+TGG 0.430301 8_1:+8351434 None:intergenic
TAATTAAGAGAAAGAGTTGA+AGG 0.431958 8_1:-8350686 Msa1176370:three_prime_UTR
TTTCTTGAACCACCTCCAAC+AGG 0.434621 8_1:+8351290 None:intergenic
AATTATTGTTATTAGCATAA+GGG 0.435765 8_1:+8350994 None:intergenic
TTAACATTAACATCTCCAAA+TGG 0.436637 8_1:+8350816 None:intergenic
GAAAAGCTAGGTTAAGATCT+TGG 0.443847 8_1:+8351144 None:intergenic
ATGTAGAGGGATAGAAGAAT+AGG 0.444778 8_1:-8350306 Msa1176370:three_prime_UTR
CAAGAAGTTAAACCTAGTCT+TGG 0.453651 8_1:-8350924 Msa1176370:CDS
CTTCAGCTCTTGACCTACTT+AGG 0.461666 8_1:-8351043 Msa1176370:CDS
GTTCAAGAAGGTGGTGGTGG+TGG 0.468196 8_1:-8350852 Msa1176370:CDS
TAACATTAACATCTCCAAAT+GGG 0.469418 8_1:+8350817 None:intergenic
AGAAGAATAGGTGAATATTA+GGG 0.481225 8_1:-8350294 Msa1176370:three_prime_UTR
CTAAGAAATGTTCCTGTTGG+AGG 0.487652 8_1:-8351302 Msa1176370:CDS
GTTATGCATCTCAACATATG+AGG 0.495564 8_1:+8351082 None:intergenic
TGTGAAACTTGTAGGGTTGG+TGG 0.499794 8_1:+8351200 None:intergenic
TGGATATTGGAATGGAATGA+TGG 0.500493 8_1:-8350727 Msa1176370:CDS
TCTCTAAGAAATGTTCCTGT+TGG 0.507663 8_1:-8351305 Msa1176370:CDS
TTCTACAAGTGGTGTTGAAG+TGG 0.514078 8_1:-8350781 Msa1176370:CDS
AGAAATGTTCCTGTTGGAGG+TGG 0.521904 8_1:-8351299 Msa1176370:CDS
ACTATATAGGTATATACTCA+TGG 0.523439 8_1:-8351510 Msa1176370:intron
ACTAGGTTTAACTTCTTGCA+TGG 0.527857 8_1:+8350929 None:intergenic
TGATGAACTATTATTAGGTG+TGG 0.533433 8_1:+8351241 None:intergenic
TGAATACAGGTTGCATGCCA+TGG 0.536484 8_1:+8350260 None:intergenic
TGTAGAAGGTATTGGACTGA+AGG 0.537478 8_1:-8351332 Msa1176370:CDS
AATTCAACTGGATATTGGAA+TGG 0.543811 8_1:-8350735 Msa1176370:CDS
TTAGGTGTGGCTAATGATGA+AGG 0.550310 8_1:+8351254 None:intergenic
TATAGGTATATACTCATGGA+AGG 0.550898 8_1:-8351506 Msa1176370:intron
AATAAACAGCTTTCTACAAG+TGG 0.552575 8_1:-8350792 Msa1176370:CDS
GAATGATGGGTGAAGGATCA+TGG 0.555879 8_1:-8350713 Msa1176370:CDS
ATGCCATGCTTGACCTAAGT+AGG 0.567095 8_1:+8351030 None:intergenic
TCTTGCATGGTGAATCCAGA+TGG 0.582527 8_1:+8350942 None:intergenic
CAAGTTCAAGAAGGTGGTGG+TGG 0.585887 8_1:-8350855 Msa1176370:CDS
AGATGTGAAACTTGTAGGGT+TGG 0.588666 8_1:+8351197 None:intergenic
TGAAAGATGTGAAACTTGTA+GGG 0.592727 8_1:+8351193 None:intergenic
AGAGAAAGAGTTGAAGGACA+AGG 0.595595 8_1:-8350680 Msa1176370:three_prime_UTR
TGCATCTCAACATATGAGGA+TGG 0.597529 8_1:+8351086 None:intergenic
TCTCAAAACCCTAAAATACA+AGG 0.599552 8_1:-8351170 Msa1176370:CDS
TCAATTGTAAATCCAAGACT+AGG 0.600734 8_1:+8350912 None:intergenic
TGGAATGGAATGATGGGTGA+AGG 0.602503 8_1:-8350720 Msa1176370:CDS
GGATATTGGAATGGAATGAT+GGG 0.607936 8_1:-8350726 Msa1176370:CDS
AAGAGCAAATAAATTGTCCA+AGG 0.610950 8_1:-8351430 Msa1176370:CDS
GATCATGTTCAAGTTCAAGA+AGG 0.611680 8_1:-8350864 Msa1176370:CDS
TAGCTCCTAATTCATGTCCA+AGG 0.613211 8_1:-8351481 Msa1176370:CDS
CCTAATTCATGTCCAAGGCA+AGG 0.615681 8_1:-8351476 Msa1176370:CDS
AGAAGGTATTGGACTGAAGG+AGG 0.618740 8_1:-8351329 Msa1176370:CDS
GTTCAAGTTCAAGAAGGTGG+TGG 0.620240 8_1:-8350858 Msa1176370:CDS
AAGGATTAGAGAAGAAAGCA+AGG 0.621824 8_1:-8351457 Msa1176370:CDS
GTATTAATTTGAGTAATGTG+AGG 0.622347 8_1:-8350340 Msa1176370:three_prime_UTR
ATTACTCAAATTAATACCAA+AGG 0.625716 8_1:+8350346 None:intergenic
AGGTCAAGCATGGCATCTAG+AGG 0.626491 8_1:-8351023 Msa1176370:CDS
CATGTTCAAGTTCAAGAAGG+TGG 0.629706 8_1:-8350861 Msa1176370:CDS
TGACCTACTTAGGTCAAGCA+TGG 0.637135 8_1:-8351033 Msa1176370:CDS
GTGTTGGTTGAATTGCACCT+TGG 0.648497 8_1:+8351413 None:intergenic
ATAGGTATATACTCATGGAA+GGG 0.653687 8_1:-8351505 Msa1176370:intron
CAAAACCCTAAAATACAAGG+AGG 0.720797 8_1:-8351167 Msa1176370:CDS
GAACACAATAAAGATCAACA+AGG 0.746748 8_1:-8350759 Msa1176370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACAACATATATA+TGG + chr8_1:8350801-8350820 None:intergenic 10.0%
!!! TGTTATTTTTTAATATTTTG+AGG - chr8_1:8350810-8350829 Msa1176370:CDS 10.0%
!! AAAATAAAATGTAAATGATT+AGG + chr8_1:8350844-8350863 None:intergenic 10.0%
!!! TACTAAAGAAAATAAATTTT+AGG + chr8_1:8352136-8352155 None:intergenic 10.0%
!! AAAAAATAACAACATATATA+TGG + chr8_1:8350801-8350820 None:intergenic 10.0%
!!! TGTTATTTTTTAATATTTTG+AGG - chr8_1:8350810-8350829 Msa1176370:CDS 10.0%
!! AAAATAAAATGTAAATGATT+AGG + chr8_1:8350844-8350863 None:intergenic 10.0%
!!! TACTAAAGAAAATAAATTTT+AGG + chr8_1:8352136-8352155 None:intergenic 10.0%
!! ACTTTATGAATGATATATAA+AGG + chr8_1:8350236-8350255 None:intergenic 15.0%
!! ATATCAACATATATATAGAT+GGG + chr8_1:8350632-8350651 None:intergenic 15.0%
!! AATATCAACATATATATAGA+TGG + chr8_1:8350633-8350652 None:intergenic 15.0%
!!! ATTTTTGATGAACTATTATT+AGG + chr8_1:8351304-8351323 None:intergenic 15.0%
!!! AATTATTGTTATTAGCATAA+GGG + chr8_1:8351546-8351565 None:intergenic 15.0%
!!! AAATTATTGTTATTAGCATA+AGG + chr8_1:8351547-8351566 None:intergenic 15.0%
!! TATGCTAATAACAATAATTT+AGG - chr8_1:8351547-8351566 Msa1176370:intron 15.0%
!! ATGCTAATAACAATAATTTA+GGG - chr8_1:8351548-8351567 Msa1176370:intron 15.0%
!!! TTTTTTTTTTCTCCTTTAAT+AGG - chr8_1:8351922-8351941 Msa1176370:intron 15.0%
!! TTTAACTACTAACATAATAT+AGG + chr8_1:8352347-8352366 None:intergenic 15.0%
!! ACTTTATGAATGATATATAA+AGG + chr8_1:8350236-8350255 None:intergenic 15.0%
!! ATATCAACATATATATAGAT+GGG + chr8_1:8350632-8350651 None:intergenic 15.0%
!! AATATCAACATATATATAGA+TGG + chr8_1:8350633-8350652 None:intergenic 15.0%
!!! ATTTTTGATGAACTATTATT+AGG + chr8_1:8351304-8351323 None:intergenic 15.0%
!!! AATTATTGTTATTAGCATAA+GGG + chr8_1:8351546-8351565 None:intergenic 15.0%
!!! AAATTATTGTTATTAGCATA+AGG + chr8_1:8351547-8351566 None:intergenic 15.0%
!! TATGCTAATAACAATAATTT+AGG - chr8_1:8351547-8351566 Msa1176370:intron 15.0%
!! ATGCTAATAACAATAATTTA+GGG - chr8_1:8351548-8351567 Msa1176370:intron 15.0%
!!! TTTTTTTTTTCTCCTTTAAT+AGG - chr8_1:8351922-8351941 Msa1176370:intron 15.0%
!! TTTAACTACTAACATAATAT+AGG + chr8_1:8352347-8352366 None:intergenic 15.0%
!!! GATCAAAAATTTCCTTTTAT+TGG + chr8_1:8350682-8350701 None:intergenic 20.0%
!!! AAAGTTGAGTTTTTGATATT+AGG + chr8_1:8350709-8350728 None:intergenic 20.0%
!! AAATTATCATATGAGCAAAA+AGG + chr8_1:8350751-8350770 None:intergenic 20.0%
!! TTGAATTTATATGGTGAAAA+GGG + chr8_1:8350868-8350887 None:intergenic 20.0%
!! ATTGAATTTATATGGTGAAA+AGG + chr8_1:8350869-8350888 None:intergenic 20.0%
!! CTCAAACAATTGAATTTATA+TGG + chr8_1:8350877-8350896 None:intergenic 20.0%
!!! ATGTTTGCATAACATATTTT+TGG + chr8_1:8350939-8350958 None:intergenic 20.0%
!! CACATGATATATAACTATAT+AGG - chr8_1:8351014-8351033 Msa1176370:CDS 20.0%
!!! GTAATAACAAAATTTTGTGT+TGG + chr8_1:8351143-8351162 None:intergenic 20.0%
!! AAAAACTATCATCATAATCA+TGG - chr8_1:8351424-8351443 Msa1176370:CDS 20.0%
!! TTTACAATTGATGGAATTAA+TGG - chr8_1:8351637-8351656 Msa1176370:intron 20.0%
!! TTGTATACAATTAATACCTT+TGG - chr8_1:8352175-8352194 Msa1176370:intron 20.0%
!! ATTACTCAAATTAATACCAA+AGG + chr8_1:8352194-8352213 None:intergenic 20.0%
!!! TCTTCTTTTAAGAAGTATAT+TGG - chr8_1:8352305-8352324 Msa1176370:intron 20.0%
!!! GATCAAAAATTTCCTTTTAT+TGG + chr8_1:8350682-8350701 None:intergenic 20.0%
!!! AAAGTTGAGTTTTTGATATT+AGG + chr8_1:8350709-8350728 None:intergenic 20.0%
!! AAATTATCATATGAGCAAAA+AGG + chr8_1:8350751-8350770 None:intergenic 20.0%
!! TTGAATTTATATGGTGAAAA+GGG + chr8_1:8350868-8350887 None:intergenic 20.0%
!! ATTGAATTTATATGGTGAAA+AGG + chr8_1:8350869-8350888 None:intergenic 20.0%
!! CTCAAACAATTGAATTTATA+TGG + chr8_1:8350877-8350896 None:intergenic 20.0%
!!! ATGTTTGCATAACATATTTT+TGG + chr8_1:8350939-8350958 None:intergenic 20.0%
!! CACATGATATATAACTATAT+AGG - chr8_1:8351014-8351033 Msa1176370:CDS 20.0%
!!! GTAATAACAAAATTTTGTGT+TGG + chr8_1:8351143-8351162 None:intergenic 20.0%
!! AAAAACTATCATCATAATCA+TGG - chr8_1:8351424-8351443 Msa1176370:CDS 20.0%
!! TTTACAATTGATGGAATTAA+TGG - chr8_1:8351637-8351656 Msa1176370:intron 20.0%
!! TTGTATACAATTAATACCTT+TGG - chr8_1:8352175-8352194 Msa1176370:intron 20.0%
!! ATTACTCAAATTAATACCAA+AGG + chr8_1:8352194-8352213 None:intergenic 20.0%
!!! TCTTCTTTTAAGAAGTATAT+TGG - chr8_1:8352305-8352324 Msa1176370:intron 20.0%
!!! ATGTTTTTGTTTTCGTTTGT+GGG + chr8_1:8350283-8350302 None:intergenic 25.0%
!!! AATGTTTTTGTTTTCGTTTG+TGG + chr8_1:8350284-8350303 None:intergenic 25.0%
! TTTAATTCATGACCAAAGAA+AGG - chr8_1:8350396-8350415 Msa1176370:three_prime_UTR 25.0%
! TCCTTATAGCTATTTATTCT+GGG - chr8_1:8350462-8350481 Msa1176370:three_prime_UTR 25.0%
!!! CTCTTTTTTCTACCAATAAA+AGG - chr8_1:8350667-8350686 Msa1176370:three_prime_UTR 25.0%
!!! GCATAACATATTTTTGGATT+TGG + chr8_1:8350933-8350952 None:intergenic 25.0%
! ACTATATAGGTATATACTCA+TGG - chr8_1:8351027-8351046 Msa1176370:CDS 25.0%
!! TGATGATAGTTTTTCATAGA+TGG + chr8_1:8351418-8351437 None:intergenic 25.0%
! TAACATTAACATCTCCAAAT+GGG + chr8_1:8351723-8351742 None:intergenic 25.0%
! TTAACATTAACATCTCCAAA+TGG + chr8_1:8351724-8351743 None:intergenic 25.0%
! TAATTAAGAGAAAGAGTTGA+AGG - chr8_1:8351851-8351870 Msa1176370:intron 25.0%
! AGACAAATGATACCTATTAA+AGG + chr8_1:8351937-8351956 None:intergenic 25.0%
! AGTTGTTCAAAACTAACAAT+AGG - chr8_1:8351959-8351978 Msa1176370:intron 25.0%
!! GTATTAATTTGAGTAATGTG+AGG - chr8_1:8352197-8352216 Msa1176370:intron 25.0%
! TAGAAGAATAGGTGAATATT+AGG - chr8_1:8352242-8352261 Msa1176370:intron 25.0%
! AGAAGAATAGGTGAATATTA+GGG - chr8_1:8352243-8352262 Msa1176370:intron 25.0%
! AAAGAAGAATTCATGAATAC+AGG + chr8_1:8352293-8352312 None:intergenic 25.0%
!!! ATGTTTTTGTTTTCGTTTGT+GGG + chr8_1:8350283-8350302 None:intergenic 25.0%
!!! AATGTTTTTGTTTTCGTTTG+TGG + chr8_1:8350284-8350303 None:intergenic 25.0%
! TTTAATTCATGACCAAAGAA+AGG - chr8_1:8350396-8350415 Msa1176370:three_prime_UTR 25.0%
! TCCTTATAGCTATTTATTCT+GGG - chr8_1:8350462-8350481 Msa1176370:three_prime_UTR 25.0%
!!! CTCTTTTTTCTACCAATAAA+AGG - chr8_1:8350667-8350686 Msa1176370:three_prime_UTR 25.0%
!!! GCATAACATATTTTTGGATT+TGG + chr8_1:8350933-8350952 None:intergenic 25.0%
! ACTATATAGGTATATACTCA+TGG - chr8_1:8351027-8351046 Msa1176370:CDS 25.0%
!! TGATGATAGTTTTTCATAGA+TGG + chr8_1:8351418-8351437 None:intergenic 25.0%
! TAACATTAACATCTCCAAAT+GGG + chr8_1:8351723-8351742 None:intergenic 25.0%
! TTAACATTAACATCTCCAAA+TGG + chr8_1:8351724-8351743 None:intergenic 25.0%
! TAATTAAGAGAAAGAGTTGA+AGG - chr8_1:8351851-8351870 Msa1176370:intron 25.0%
! AGACAAATGATACCTATTAA+AGG + chr8_1:8351937-8351956 None:intergenic 25.0%
! AGTTGTTCAAAACTAACAAT+AGG - chr8_1:8351959-8351978 Msa1176370:intron 25.0%
!! GTATTAATTTGAGTAATGTG+AGG - chr8_1:8352197-8352216 Msa1176370:intron 25.0%
! TAGAAGAATAGGTGAATATT+AGG - chr8_1:8352242-8352261 Msa1176370:intron 25.0%
! AGAAGAATAGGTGAATATTA+GGG - chr8_1:8352243-8352262 Msa1176370:intron 25.0%
! AAAGAAGAATTCATGAATAC+AGG + chr8_1:8352293-8352312 None:intergenic 25.0%
AAACATTCTTTCTTGCACTA+AGG - chr8_1:8350297-8350316 Msa1176370:three_prime_UTR 30.0%
CTCCTTATAGCTATTTATTC+TGG - chr8_1:8350461-8350480 Msa1176370:three_prime_UTR 30.0%
ACCCAGAATAAATAGCTATA+AGG + chr8_1:8350466-8350485 None:intergenic 30.0%
!!! CATTTTCTAGCTATACCTAT+AGG - chr8_1:8350566-8350585 Msa1176370:three_prime_UTR 30.0%
ATGAACATATAGTCACCTAT+AGG + chr8_1:8350584-8350603 None:intergenic 30.0%
TCAACATATATATAGATGGG+TGG + chr8_1:8350629-8350648 None:intergenic 30.0%
AAAGGTAAAGAGAAAGGAAA+AGG + chr8_1:8350733-8350752 None:intergenic 30.0%
TATAGGTATATACTCATGGA+AGG - chr8_1:8351031-8351050 Msa1176370:CDS 30.0%
ATAGGTATATACTCATGGAA+GGG - chr8_1:8351032-8351051 Msa1176370:CDS 30.0%
AAGAGCAAATAAATTGTCCA+AGG - chr8_1:8351107-8351126 Msa1176370:CDS 30.0%
TGATGAACTATTATTAGGTG+TGG + chr8_1:8351299-8351318 None:intergenic 30.0%
TGAAAGATGTGAAACTTGTA+GGG + chr8_1:8351347-8351366 None:intergenic 30.0%
ATGAAAGATGTGAAACTTGT+AGG + chr8_1:8351348-8351367 None:intergenic 30.0%
TCTCAAAACCCTAAAATACA+AGG - chr8_1:8351367-8351386 Msa1176370:CDS 30.0%
! TTTTCATAGATGGAAAAGCT+AGG + chr8_1:8351408-8351427 None:intergenic 30.0%
! GGATAAATAGCATTTGAGTT+TGG + chr8_1:8351577-8351596 None:intergenic 30.0%
! TCAAATGCTATTTATCCATC+TGG - chr8_1:8351580-8351599 Msa1176370:intron 30.0%
TCAATTGTAAATCCAAGACT+AGG + chr8_1:8351628-8351647 None:intergenic 30.0%
AGTCTTGGATTTACAATTGA+TGG - chr8_1:8351628-8351647 Msa1176370:intron 30.0%
AATAAACAGCTTTCTACAAG+TGG - chr8_1:8351745-8351764 Msa1176370:intron 30.0%
GAACACAATAAAGATCAACA+AGG - chr8_1:8351778-8351797 Msa1176370:intron 30.0%
AAGGAAATTCAACTGGATAT+TGG - chr8_1:8351797-8351816 Msa1176370:intron 30.0%
AATTCAACTGGATATTGGAA+TGG - chr8_1:8351802-8351821 Msa1176370:intron 30.0%
! AGGATTGTTTTCATATGTAG+AGG - chr8_1:8352217-8352236 Msa1176370:intron 30.0%
! GGATTGTTTTCATATGTAGA+GGG - chr8_1:8352218-8352237 Msa1176370:intron 30.0%
AAACATTCTTTCTTGCACTA+AGG - chr8_1:8350297-8350316 Msa1176370:three_prime_UTR 30.0%
CTCCTTATAGCTATTTATTC+TGG - chr8_1:8350461-8350480 Msa1176370:three_prime_UTR 30.0%
ACCCAGAATAAATAGCTATA+AGG + chr8_1:8350466-8350485 None:intergenic 30.0%
!!! CATTTTCTAGCTATACCTAT+AGG - chr8_1:8350566-8350585 Msa1176370:three_prime_UTR 30.0%
ATGAACATATAGTCACCTAT+AGG + chr8_1:8350584-8350603 None:intergenic 30.0%
TCAACATATATATAGATGGG+TGG + chr8_1:8350629-8350648 None:intergenic 30.0%
AAAGGTAAAGAGAAAGGAAA+AGG + chr8_1:8350733-8350752 None:intergenic 30.0%
TATAGGTATATACTCATGGA+AGG - chr8_1:8351031-8351050 Msa1176370:CDS 30.0%
ATAGGTATATACTCATGGAA+GGG - chr8_1:8351032-8351051 Msa1176370:CDS 30.0%
AAGAGCAAATAAATTGTCCA+AGG - chr8_1:8351107-8351126 Msa1176370:CDS 30.0%
TGATGAACTATTATTAGGTG+TGG + chr8_1:8351299-8351318 None:intergenic 30.0%
TGAAAGATGTGAAACTTGTA+GGG + chr8_1:8351347-8351366 None:intergenic 30.0%
ATGAAAGATGTGAAACTTGT+AGG + chr8_1:8351348-8351367 None:intergenic 30.0%
TCTCAAAACCCTAAAATACA+AGG - chr8_1:8351367-8351386 Msa1176370:CDS 30.0%
! TTTTCATAGATGGAAAAGCT+AGG + chr8_1:8351408-8351427 None:intergenic 30.0%
! GGATAAATAGCATTTGAGTT+TGG + chr8_1:8351577-8351596 None:intergenic 30.0%
! TCAAATGCTATTTATCCATC+TGG - chr8_1:8351580-8351599 Msa1176370:intron 30.0%
TCAATTGTAAATCCAAGACT+AGG + chr8_1:8351628-8351647 None:intergenic 30.0%
AGTCTTGGATTTACAATTGA+TGG - chr8_1:8351628-8351647 Msa1176370:intron 30.0%
AATAAACAGCTTTCTACAAG+TGG - chr8_1:8351745-8351764 Msa1176370:intron 30.0%
GAACACAATAAAGATCAACA+AGG - chr8_1:8351778-8351797 Msa1176370:intron 30.0%
AAGGAAATTCAACTGGATAT+TGG - chr8_1:8351797-8351816 Msa1176370:intron 30.0%
AATTCAACTGGATATTGGAA+TGG - chr8_1:8351802-8351821 Msa1176370:intron 30.0%
! AGGATTGTTTTCATATGTAG+AGG - chr8_1:8352217-8352236 Msa1176370:intron 30.0%
! GGATTGTTTTCATATGTAGA+GGG - chr8_1:8352218-8352237 Msa1176370:intron 30.0%
! AAAAGCATAGAGAGAGAAAG+AGG + chr8_1:8350359-8350378 None:intergenic 35.0%
AATTCATGACCAAAGAAAGG+TGG - chr8_1:8350399-8350418 Msa1176370:three_prime_UTR 35.0%
AATCCATATCCACCTTTCTT+TGG + chr8_1:8350411-8350430 None:intergenic 35.0%
AGCTATTTATTCTGGGTTTG+AGG - chr8_1:8350469-8350488 Msa1176370:three_prime_UTR 35.0%
GCTATTTATTCTGGGTTTGA+GGG - chr8_1:8350470-8350489 Msa1176370:three_prime_UTR 35.0%
GAGCAAAAAGGTAAAGAGAA+AGG + chr8_1:8350739-8350758 None:intergenic 35.0%
AAGGATTAGAGAAGAAAGCA+AGG - chr8_1:8351080-8351099 Msa1176370:CDS 35.0%
GGACAATTTATTTGCTCTTG+TGG + chr8_1:8351106-8351125 None:intergenic 35.0%
!! CATGTCTTGCAAAAGTATCT+TGG + chr8_1:8351187-8351206 None:intergenic 35.0%
! ACTTTTGCAAGACATGTAGA+AGG - chr8_1:8351191-8351210 Msa1176370:CDS 35.0%
! TCTCTAAGAAATGTTCCTGT+TGG - chr8_1:8351232-8351251 Msa1176370:CDS 35.0%
CAAAACCCTAAAATACAAGG+AGG - chr8_1:8351370-8351389 Msa1176370:CDS 35.0%
GAAAAGCTAGGTTAAGATCT+TGG + chr8_1:8351396-8351415 None:intergenic 35.0%
GTTATGCATCTCAACATATG+AGG + chr8_1:8351458-8351477 None:intergenic 35.0%
! ACTAGGTTTAACTTCTTGCA+TGG + chr8_1:8351611-8351630 None:intergenic 35.0%
CAAGAAGTTAAACCTAGTCT+TGG - chr8_1:8351613-8351632 Msa1176370:intron 35.0%
! GATCATGTTCAAGTTCAAGA+AGG - chr8_1:8351673-8351692 Msa1176370:intron 35.0%
GATCAACAAGGAAATTCAAC+TGG - chr8_1:8351790-8351809 Msa1176370:intron 35.0%
TGGATATTGGAATGGAATGA+TGG - chr8_1:8351810-8351829 Msa1176370:intron 35.0%
GGATATTGGAATGGAATGAT+GGG - chr8_1:8351811-8351830 Msa1176370:intron 35.0%
ACATGCACTACTGGAAAAAT+TGG - chr8_1:8351990-8352009 Msa1176370:intron 35.0%
ATGTAGAGGGATAGAAGAAT+AGG - chr8_1:8352231-8352250 Msa1176370:intron 35.0%
!!! TTAGGGATTGTTTTTGTCCA+TGG - chr8_1:8352260-8352279 Msa1176370:intron 35.0%
!! TGTTTTTGACTACACAAGCA+TGG + chr8_1:8350175-8350194 None:intergenic 35.0%
! AAAAGCATAGAGAGAGAAAG+AGG + chr8_1:8350359-8350378 None:intergenic 35.0%
AATTCATGACCAAAGAAAGG+TGG - chr8_1:8350399-8350418 Msa1176370:three_prime_UTR 35.0%
AATCCATATCCACCTTTCTT+TGG + chr8_1:8350411-8350430 None:intergenic 35.0%
AGCTATTTATTCTGGGTTTG+AGG - chr8_1:8350469-8350488 Msa1176370:three_prime_UTR 35.0%
GCTATTTATTCTGGGTTTGA+GGG - chr8_1:8350470-8350489 Msa1176370:three_prime_UTR 35.0%
GAGCAAAAAGGTAAAGAGAA+AGG + chr8_1:8350739-8350758 None:intergenic 35.0%
AAGGATTAGAGAAGAAAGCA+AGG - chr8_1:8351080-8351099 Msa1176370:CDS 35.0%
GGACAATTTATTTGCTCTTG+TGG + chr8_1:8351106-8351125 None:intergenic 35.0%
!! CATGTCTTGCAAAAGTATCT+TGG + chr8_1:8351187-8351206 None:intergenic 35.0%
! ACTTTTGCAAGACATGTAGA+AGG - chr8_1:8351191-8351210 Msa1176370:CDS 35.0%
! TCTCTAAGAAATGTTCCTGT+TGG - chr8_1:8351232-8351251 Msa1176370:CDS 35.0%
CAAAACCCTAAAATACAAGG+AGG - chr8_1:8351370-8351389 Msa1176370:CDS 35.0%
GAAAAGCTAGGTTAAGATCT+TGG + chr8_1:8351396-8351415 None:intergenic 35.0%
GTTATGCATCTCAACATATG+AGG + chr8_1:8351458-8351477 None:intergenic 35.0%
! ACTAGGTTTAACTTCTTGCA+TGG + chr8_1:8351611-8351630 None:intergenic 35.0%
CAAGAAGTTAAACCTAGTCT+TGG - chr8_1:8351613-8351632 Msa1176370:intron 35.0%
! GATCATGTTCAAGTTCAAGA+AGG - chr8_1:8351673-8351692 Msa1176370:intron 35.0%
GATCAACAAGGAAATTCAAC+TGG - chr8_1:8351790-8351809 Msa1176370:intron 35.0%
TGGATATTGGAATGGAATGA+TGG - chr8_1:8351810-8351829 Msa1176370:intron 35.0%
GGATATTGGAATGGAATGAT+GGG - chr8_1:8351811-8351830 Msa1176370:intron 35.0%
ACATGCACTACTGGAAAAAT+TGG - chr8_1:8351990-8352009 Msa1176370:intron 35.0%
ATGTAGAGGGATAGAAGAAT+AGG - chr8_1:8352231-8352250 Msa1176370:intron 35.0%
!!! TTAGGGATTGTTTTTGTCCA+TGG - chr8_1:8352260-8352279 Msa1176370:intron 35.0%
! TGCAGTCTTGTAGACATACA+AGG - chr8_1:8350328-8350347 Msa1176370:three_prime_UTR 40.0%
TGACCAAAGAAAGGTGGATA+TGG - chr8_1:8350405-8350424 Msa1176370:three_prime_UTR 40.0%
! GTTGATAGATGTGTCAGCTT+TGG + chr8_1:8350501-8350520 None:intergenic 40.0%
TAGCTCCTAATTCATGTCCA+AGG - chr8_1:8351056-8351075 Msa1176370:CDS 40.0%
TTCTTCTCTAATCCTTGCCT+TGG + chr8_1:8351076-8351095 None:intergenic 40.0%
! GCAAGACATGTAGAAGGTAT+TGG - chr8_1:8351197-8351216 Msa1176370:CDS 40.0%
!! TGTAGAAGGTATTGGACTGA+AGG - chr8_1:8351205-8351224 Msa1176370:CDS 40.0%
CTAAGAAATGTTCCTGTTGG+AGG - chr8_1:8351235-8351254 Msa1176370:CDS 40.0%
TTAGGTGTGGCTAATGATGA+AGG + chr8_1:8351286-8351305 None:intergenic 40.0%
AGATGTGAAACTTGTAGGGT+TGG + chr8_1:8351343-8351362 None:intergenic 40.0%
! CTTGGCCTCCTTGTATTTTA+GGG + chr8_1:8351378-8351397 None:intergenic 40.0%
! TCTTGGCCTCCTTGTATTTT+AGG + chr8_1:8351379-8351398 None:intergenic 40.0%
TGCATCTCAACATATGAGGA+TGG + chr8_1:8351454-8351473 None:intergenic 40.0%
! CATGTTCAAGTTCAAGAAGG+TGG - chr8_1:8351676-8351695 Msa1176370:intron 40.0%
! GGAAGACTTTTGTTCCCATT+TGG - chr8_1:8351706-8351725 Msa1176370:intron 40.0%
! TTCTACAAGTGGTGTTGAAG+TGG - chr8_1:8351756-8351775 Msa1176370:intron 40.0%
AGAGAAAGAGTTGAAGGACA+AGG - chr8_1:8351857-8351876 Msa1176370:intron 40.0%
! TGCAGTCTTGTAGACATACA+AGG - chr8_1:8350328-8350347 Msa1176370:three_prime_UTR 40.0%
TGACCAAAGAAAGGTGGATA+TGG - chr8_1:8350405-8350424 Msa1176370:three_prime_UTR 40.0%
! GTTGATAGATGTGTCAGCTT+TGG + chr8_1:8350501-8350520 None:intergenic 40.0%
TAGCTCCTAATTCATGTCCA+AGG - chr8_1:8351056-8351075 Msa1176370:CDS 40.0%
TTCTTCTCTAATCCTTGCCT+TGG + chr8_1:8351076-8351095 None:intergenic 40.0%
! GCAAGACATGTAGAAGGTAT+TGG - chr8_1:8351197-8351216 Msa1176370:CDS 40.0%
!! TGTAGAAGGTATTGGACTGA+AGG - chr8_1:8351205-8351224 Msa1176370:CDS 40.0%
CTAAGAAATGTTCCTGTTGG+AGG - chr8_1:8351235-8351254 Msa1176370:CDS 40.0%
TTAGGTGTGGCTAATGATGA+AGG + chr8_1:8351286-8351305 None:intergenic 40.0%
AGATGTGAAACTTGTAGGGT+TGG + chr8_1:8351343-8351362 None:intergenic 40.0%
! CTTGGCCTCCTTGTATTTTA+GGG + chr8_1:8351378-8351397 None:intergenic 40.0%
! TCTTGGCCTCCTTGTATTTT+AGG + chr8_1:8351379-8351398 None:intergenic 40.0%
TGCATCTCAACATATGAGGA+TGG + chr8_1:8351454-8351473 None:intergenic 40.0%
! CATGTTCAAGTTCAAGAAGG+TGG - chr8_1:8351676-8351695 Msa1176370:intron 40.0%
! GGAAGACTTTTGTTCCCATT+TGG - chr8_1:8351706-8351725 Msa1176370:intron 40.0%
! TTCTACAAGTGGTGTTGAAG+TGG - chr8_1:8351756-8351775 Msa1176370:intron 40.0%
AGAGAAAGAGTTGAAGGACA+AGG - chr8_1:8351857-8351876 Msa1176370:intron 40.0%
TTTCTTGCACTAAGGAGAGC+AGG - chr8_1:8350305-8350324 Msa1176370:three_prime_UTR 45.0%
CCTTGCCTTGGACATGAATT+AGG + chr8_1:8351064-8351083 None:intergenic 45.0%
CCTAATTCATGTCCAAGGCA+AGG - chr8_1:8351061-8351080 Msa1176370:CDS 45.0%
!! GTGTTGGTTGAATTGCACCT+TGG + chr8_1:8351127-8351146 None:intergenic 45.0%
!! AGAAGGTATTGGACTGAAGG+AGG - chr8_1:8351208-8351227 Msa1176370:CDS 45.0%
AGAAATGTTCCTGTTGGAGG+TGG - chr8_1:8351238-8351257 Msa1176370:CDS 45.0%
TTTCTTGAACCACCTCCAAC+AGG + chr8_1:8351250-8351269 None:intergenic 45.0%
!! CTTGTAGGGTTGGTGGATTT+AGG + chr8_1:8351333-8351352 None:intergenic 45.0%
TGTGAAACTTGTAGGGTTGG+TGG + chr8_1:8351340-8351359 None:intergenic 45.0%
CTTCAGCTCTTGACCTACTT+AGG - chr8_1:8351494-8351513 Msa1176370:CDS 45.0%
TGACCTACTTAGGTCAAGCA+TGG - chr8_1:8351504-8351523 Msa1176370:CDS 45.0%
ATGCCATGCTTGACCTAAGT+AGG + chr8_1:8351510-8351529 None:intergenic 45.0%
TCTTGCATGGTGAATCCAGA+TGG + chr8_1:8351598-8351617 None:intergenic 45.0%
! GTTCAAGTTCAAGAAGGTGG+TGG - chr8_1:8351679-8351698 Msa1176370:intron 45.0%
!! TGGAATGGAATGATGGGTGA+AGG - chr8_1:8351817-8351836 Msa1176370:intron 45.0%
!! GAATGATGGGTGAAGGATCA+TGG - chr8_1:8351824-8351843 Msa1176370:intron 45.0%
GATCAATGCACATGCACTAC+TGG - chr8_1:8351981-8352000 Msa1176370:intron 45.0%
TGAATACAGGTTGCATGCCA+TGG + chr8_1:8352280-8352299 None:intergenic 45.0%
TTTCTTGCACTAAGGAGAGC+AGG - chr8_1:8350305-8350324 Msa1176370:three_prime_UTR 45.0%
CCTTGCCTTGGACATGAATT+AGG + chr8_1:8351064-8351083 None:intergenic 45.0%
CCTAATTCATGTCCAAGGCA+AGG - chr8_1:8351061-8351080 Msa1176370:CDS 45.0%
!! GTGTTGGTTGAATTGCACCT+TGG + chr8_1:8351127-8351146 None:intergenic 45.0%
!! AGAAGGTATTGGACTGAAGG+AGG - chr8_1:8351208-8351227 Msa1176370:CDS 45.0%
AGAAATGTTCCTGTTGGAGG+TGG - chr8_1:8351238-8351257 Msa1176370:CDS 45.0%
TTTCTTGAACCACCTCCAAC+AGG + chr8_1:8351250-8351269 None:intergenic 45.0%
!! CTTGTAGGGTTGGTGGATTT+AGG + chr8_1:8351333-8351352 None:intergenic 45.0%
TGTGAAACTTGTAGGGTTGG+TGG + chr8_1:8351340-8351359 None:intergenic 45.0%
CTTCAGCTCTTGACCTACTT+AGG - chr8_1:8351494-8351513 Msa1176370:CDS 45.0%
TGACCTACTTAGGTCAAGCA+TGG - chr8_1:8351504-8351523 Msa1176370:CDS 45.0%
ATGCCATGCTTGACCTAAGT+AGG + chr8_1:8351510-8351529 None:intergenic 45.0%
TCTTGCATGGTGAATCCAGA+TGG + chr8_1:8351598-8351617 None:intergenic 45.0%
! GTTCAAGTTCAAGAAGGTGG+TGG - chr8_1:8351679-8351698 Msa1176370:intron 45.0%
!! TGGAATGGAATGATGGGTGA+AGG - chr8_1:8351817-8351836 Msa1176370:intron 45.0%
!! GAATGATGGGTGAAGGATCA+TGG - chr8_1:8351824-8351843 Msa1176370:intron 45.0%
GATCAATGCACATGCACTAC+TGG - chr8_1:8351981-8352000 Msa1176370:intron 45.0%
TGAATACAGGTTGCATGCCA+TGG + chr8_1:8352280-8352299 None:intergenic 45.0%
!! ATTATATATAACTATATTTA+AGG - chr8_1:8350602-8350621 Msa1176370:three_prime_UTR 5.0%
!!! TTTTATATATTTATATTCTA+TGG - chr8_1:8350983-8351002 Msa1176370:CDS 5.0%
!! ATTATATATAACTATATTTA+AGG - chr8_1:8350602-8350621 Msa1176370:three_prime_UTR 5.0%
!!! TTTTATATATTTATATTCTA+TGG - chr8_1:8350983-8351002 Msa1176370:CDS 5.0%
!! AGGGTTGGTGGATTTAGGTC+AGG + chr8_1:8351328-8351347 None:intergenic 50.0%
AGGTCAAGCATGGCATCTAG+AGG - chr8_1:8351514-8351533 Msa1176370:intron 50.0%
! CAAGTTCAAGAAGGTGGTGG+TGG - chr8_1:8351682-8351701 Msa1176370:intron 50.0%
!! AGGGTTGGTGGATTTAGGTC+AGG + chr8_1:8351328-8351347 None:intergenic 50.0%
AGGTCAAGCATGGCATCTAG+AGG - chr8_1:8351514-8351533 Msa1176370:intron 50.0%
! CAAGTTCAAGAAGGTGGTGG+TGG - chr8_1:8351682-8351701 Msa1176370:intron 50.0%
!! GTTCAAGAAGGTGGTGGTGG+TGG - chr8_1:8351685-8351704 Msa1176370:intron 55.0%
!! GTTCAAGAAGGTGGTGGTGG+TGG - chr8_1:8351685-8351704 Msa1176370:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8350174 8352385 8350174 ID=Msa1176370;Name=Msa1176370
chr8_1 mRNA 8350174 8352385 8350174 ID=Msa1176370-mRNA-1;Parent=Msa1176370;Name=Msa1176370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.5|1|0|0|2|536|273
chr8_1 exon 8350174 8351523 8350174 ID=Msa1176370-mRNA-1:exon:2874;Parent=Msa1176370-mRNA-1
chr8_1 exon 8352378 8352385 8352378 ID=Msa1176370-mRNA-1:exon:2873;Parent=Msa1176370-mRNA-1
chr8_1 CDS 8352378 8352385 8352378 ID=Msa1176370-mRNA-1:cds;Parent=Msa1176370-mRNA-1
chr8_1 CDS 8350710 8351523 8350710 ID=Msa1176370-mRNA-1:cds;Parent=Msa1176370-mRNA-1
chr8_1 three_prime_UTR 8350174 8350709 8350174 ID=Msa1176370-mRNA-1:three_prime_utr;Parent=Msa1176370-mRNA-1
Gene Sequence

>Msa1176370

ATGCTTGTGTATATACTCATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTTCATCAAAAATTCCTGACCTAAATCCACCAACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGAAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCATCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAACAATAATTTAGGGTTGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTACAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA
Protein sequence

>Msa1176370

MLVYILMEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMKNYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNLGLPNSNAIYPSGFTMQEVKPSLGFTIDGINGNRSYDHVQVQEGGGGGRLLFPFGDVNVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW*