AlfalfaGEDB | Msa1245440

M. sativa cultivar zhongmu-4 / Msa1245440

KEGG: K14802
GO: GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0034204 GO:0042623 GO:0043492 GO:0044464 GO:0045332 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035
PFAM: PF16209.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245440	XP_003628144.2	98.554	1176	17	0	2	1177	1	1176	0.0	2407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245440	sp\|P98204\|ALA1_ARATH	69.576	1157	332	7	22	1177	20	1157	0.0	1700

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa1245440	0.800095	1.692340e-48	-8.615850e-47
Msa0028620	Msa1245440	0.816598	5.092358e-52	-8.615850e-47
Msa0035390	Msa1245440	0.806560	7.752508e-50	-8.615850e-47
Msa0053860	Msa1245440	0.824933	6.169618e-54	-8.615850e-47
Msa0056450	Msa1245440	0.806461	8.136405e-50	-8.615850e-47
Msa0065680	Msa1245440	-0.804986	1.660144e-49	-8.615850e-47
Msa0089730	Msa1245440	0.802826	4.666496e-49	-8.615850e-47
Msa0089980	Msa1245440	0.819774	9.732784e-53	-8.615850e-47
Msa0090010	Msa1245440	0.816187	6.292154e-52	-8.615850e-47
Msa0101860	Msa1245440	0.824442	8.052614e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1245440	MtrunA17_Chr8g0355251	98.554	1176	17	0	2	1177	1	1176	2407
Msa1245440	MtrunA17_Chr3g0078371	77.481	1159	237	7	22	1176	73	1211	1831
Msa1245440	MtrunA17_Chr7g0244991	58.311	1137	429	10	65	1160	137	1269	1310
Msa1245440	MtrunA17_Chr8g0363911	37.148	1171	652	24	53	1174	26	1161	707
Msa1245440	MtrunA17_Chr5g0415271	36.796	1136	639	19	71	1158	24	1128	704
Msa1245440	MtrunA17_Chr6g0450601	37.413	1144	646	23	70	1157	37	1166	691
Msa1245440	MtrunA17_Chr8g0368691	36.446	1103	642	19	87	1144	67	1155	681
Msa1245440	MtrunA17_Chr4g0062251	37.209	1075	615	20	70	1101	38	1095	679
Msa1245440	MtrunA17_Chr2g0329991	36.222	1154	649	25	70	1157	40	1172	679
Msa1245440	MtrunA17_Chr8g0342811	35.314	1161	652	28	70	1158	40	1173	661

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1245440	AT5G04930.1	69.576	1157	332	7	22	1177	20	1157	1700
Msa1245440	AT3G27870.1	38.488	1151	617	27	70	1158	37	1158	716
Msa1245440	AT1G59820.1	35.906	1192	676	21	23	1176	11	1152	711
Msa1245440	AT3G13900.1	36.915	1154	640	21	71	1156	41	1174	696
Msa1245440	AT3G25610.1	37.288	1121	639	24	70	1144	39	1141	689
Msa1245440	AT1G17500.2	36.924	1151	641	30	70	1161	40	1164	688
Msa1245440	AT1G17500.1	36.924	1151	641	30	70	1161	40	1164	688
Msa1245440	AT1G54280.2	36.810	1160	635	26	71	1156	41	1176	686
Msa1245440	AT1G54280.3	36.810	1160	635	26	71	1156	41	1176	686
Msa1245440	AT1G54280.1	36.810	1160	635	26	71	1156	41	1176	686

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Find 255 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATCACAAGGAAT+CGG	0.524501	8_2:+35542914	None:intergenic
AAAAGAATGTCTGTTATATT+GGG	0.301829	8_2:-35541258	Msa1245440:CDS
AAAATGGCAACAACAATAGT+TGG	0.499937	8_2:+35539701	None:intergenic
AAACCGAATAGGAATATATA+TGG	0.343990	8_2:-35542743	Msa1245440:CDS
AAAGAATGTCTGTTATATTG+GGG	0.603285	8_2:-35541257	Msa1245440:CDS
AAAGCTATGCTCAATAACTC+AGG	0.590314	8_2:-35542590	Msa1245440:CDS
AAAGGGTAGCTTTGGAGAAA+TGG	0.374344	8_2:+35543845	None:intergenic
AAAGTTATCAATATTATGGA+TGG	0.497507	8_2:-35542382	Msa1245440:CDS
AAAGTTGAGAACAATAGGTT+AGG	0.450930	8_2:-35543022	Msa1245440:CDS
AAATCAGTGATGAAGATGCT+AGG	0.579456	8_2:-35543327	Msa1245440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAGAAGTAGAAGCAAGT+TGG	+	chr8_2:35538114-35538133	None:intergenic	30.0%
TTCTGGTAGAAATTCAACTA+GGG	-	chr8_2:35538562-35538581	Msa1245440:intron	30.0%
AATCTCTCATTTGTTCTATC+AGG	+	chr8_2:35538719-35538738	None:intergenic	30.0%
AATGAGAGATTTGAATTTGC+AGG	-	chr8_2:35538728-35538747	Msa1245440:intron	30.0%
ATGAGAGATTTGAATTTGCA+GGG	-	chr8_2:35538729-35538748	Msa1245440:intron	30.0%
ATTTGAATTTGCAGGGAATT+CGG	-	chr8_2:35538736-35538755	Msa1245440:intron	30.0%
AACTGTTCAAACAAATTCCT+AGG	+	chr8_2:35538797-35538816	None:intergenic	30.0%
CAGATAAAGTTGAGAACAAT+AGG	-	chr8_2:35538975-35538994	Msa1245440:intron	30.0%
AAAGTTGAGAACAATAGGTT+AGG	-	chr8_2:35538980-35538999	Msa1245440:intron	30.0%
GTCATTTCATAGAGAAGAAA+TGG	-	chr8_2:35539020-35539039	Msa1245440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	35538061	35543963	35538061	ID=Msa1245440;Name=Msa1245440
chr8_2	mRNA	35538061	35543963	35538061	ID=Msa1245440-mRNA-1;Parent=Msa1245440;Name=Msa1245440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=424\|1\|1\|1\|1\|1\|7\|262\|1177
chr8_2	exon	35538061	35538539	35538061	ID=Msa1245440-mRNA-1:exon:11275;Parent=Msa1245440-mRNA-1
chr8_2	exon	35539350	35539808	35539350	ID=Msa1245440-mRNA-1:exon:11274;Parent=Msa1245440-mRNA-1
chr8_2	exon	35539998	35540217	35539998	ID=Msa1245440-mRNA-1:exon:11273;Parent=Msa1245440-mRNA-1
chr8_2	exon	35540396	35540519	35540396	ID=Msa1245440-mRNA-1:exon:11272;Parent=Msa1245440-mRNA-1
chr8_2	exon	35540609	35541320	35540609	ID=Msa1245440-mRNA-1:exon:11271;Parent=Msa1245440-mRNA-1
chr8_2	exon	35541574	35541880	35541574	ID=Msa1245440-mRNA-1:exon:11270;Parent=Msa1245440-mRNA-1
chr8_2	exon	35542045	35543963	35542045	ID=Msa1245440-mRNA-1:exon:11269;Parent=Msa1245440-mRNA-1
chr8_2	five_prime_UTR	35543540	35543963	35543540	ID=Msa1245440-mRNA-1:five_prime_utr;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35542045	35543539	35542045	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35541574	35541880	35541574	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35540609	35541320	35540609	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35540396	35540519	35540396	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35539998	35540217	35539998	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35539350	35539808	35539350	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	CDS	35538323	35538539	35538323	ID=Msa1245440-mRNA-1:cds;Parent=Msa1245440-mRNA-1
chr8_2	three_prime_UTR	35538061	35538322	35538061	ID=Msa1245440-mRNA-1:three_prime_utr;Parent=Msa1245440-mRNA-1

Gene Sequence

>Msa1245440

ATGATGGATACAAAAAACCCATCTGAGAATTCTTCAAAGTTTGAAACTTTCATGCATAATTCATCATCAAGAAGAAGTTCTGGTAGAAATTCAACTAGGGAAGTCACTTTTGGTCACTCTGAGTCCAAACCTGTAAGATATGGATCAAAGGGTGCTGTTGATTCTGAAGCATTCAGCATGTCTCAGAAAGAAATCAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGATAGAACAAATGAGAGATTTGAATTTGCAGGGAATTCGGTTCGGACCGGAAAATACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATACTTAATCAGTTACCTCAACTAGCTGTTTTTGGTAGAGGTGTATCAATTTTGCCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGGAGACATAGATCAGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCATTTCATAGAGAAGAAATGGAAAGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAACCGATTCCTTGTGATTTTGTTTTGTTGTCGACGAGTGATCCTACCGGTGTTGCGTATGTTCAAACTCTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATTTAAGTTTCACGAAAAGGAGAGGTTTAGTGGTTTGATTAAGTGCGAGAAACCGAATAGGAATATATATGGATTTCAGGCTACAATGGAGGTTGATGGAAAGAGATTGTCACTTGGTTCCTCGAATATTGTACTTAGAGGATGTGAACTTAAGAATACTAATTGTGTGGTTGGTGTTGCTGTGTATTGTGGCCGTGAGACAAAAGCTATGCTCAATAACTCAGGAGCTCCGTCTAAGAGGAGCCGTCTTGAGACACAAATGAACTCTGAGATCATCATGCTTTCGTTCTTTCTTGTAGTTTTGTGTTCAGTTACTTCAGTTTGTGCTGCTGTTTGGTTAAAGCGAAACAAGAATGAATTGAATCGATTACCTTATTATAGGAAATTGGATTTTTCAAAGGGAAAAGAGGAAAGTTATCAATATTATGGATGGGGAGTGGAAATCCTTTTCACATTCCTCATGTCGGTTATAGTTTACCAGGTTATGATCCCGATATCCTTGTACATTTCTATGGAGCTTGTTCGTGTTGGTCAGGCCTACTTCATGATCAAAGATTCTAGATTGTATGATGAGGCAACGAATTCAAGATTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCAGACAAAACTGGCACTCTGACTGAGAACAAGATGGAGTTTCAATGCGCTAGTATTTGGGGTGTCGATTACAGTTCTGCAAAAGCCAGCCTTGAGAATGAGCAAGTTGAATACTCTCTTCAAGTGAATGGAAAGGTCTTGAAGCCAAAAATGAGGGTGAAAGTTAATCAAGAGCTTATGCGATTAGCAAAAAGTGGATTTGCAAGCAAAGATGGAAAACGGATTTACGATTTCTTTCTTGCACTGGCAGCATGCAATACTATTGTGCCTCTTGTTGTTGACACATCCGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCGTTGACATATGCTGCCGCTGCCTATGGTTTTATGCTTATAGAGCGAACCTCAGGTCACATAATGATTGATATTCTTGGAGAACAACAAAGGTTCAATGTCTTGGGGTTGCATGAATTTGATAGTGATCGGAAAAGAATGTCTGTTATATTGGGGTGCAATGACAATTCGGTGAAACTTTTCGTCAAAGGGGCGGATACATCAATGTTCAGTGTGATCAATAAATCATTGAATACAGACATAATACAGGATACTGAAACCCATCTTCACTCTTATTCTTCTGTGGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTAAATGCTTCAGAATTTGATCAATGGCATTTTGCCTTTGAGGCAGCAAGTACTTCTATGATTGGTAGGGCTGCTTTGCTTCGCAAGGTTGCTGCAAATGTAGAAAATAACCTATGCATATTGGGCGCTACCGCTATTGAAGATAAACTGCAGCAAGGTGTACCAGAAGCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTGTTGACTGGGGACAAACAAGAAACTGCCATATCAATTGGCTACTCGTCAAAGCTACTAACAAGTGGCATGACTCAGTTTAGAATTAAGAGCAATAATCGAGAGTCGTGTAGAAGACGTTTACAGGATGCACTTCTCATGTCTAGAAAAAATGTAGCTGCACCTGAGGTTGGCAACTATATTGAAGGAAGTTCTGATGGAGTTGTTTCAACTCCTATGGCGTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGATAGTGAACTGGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTAGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTCGTAAAGAATAGGACGGCCGACATGACTCTAGCCATCGGAGATGGTGCTAACGATGTATCAATGATCCAAATGGCTGATGTTGGGGTTGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTCGGTTTTTAGTTCCTCTCTTATTTGTACACGGACACTGGAATTACCAACGACTAGGCTACATGGTGCTATACAATTTTTATAGAAATGCTGTCTTTGTGCTAATTCTGTTTTGGTATGTTCTCTTCACTGCCTTCACTTTGACAACAGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGCCATTTTTGACAAGGATCTTAGTAAAAGGACTCTTCTACAGAGTCCTCAGCTTTATGGGGCTGGACAAAGACAAGAGGCCTACAACAAAAAATTGTTTTGGTTGACGATAGCCGATACGTTATGGCAAAGCGTTGTTGTCTTTTTTGTTCCTCTCTTTGCATATTGGGGAAGCACTGTAGATATAGCAAGTATGGGGGATCTTTGGACTATTTCGATAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTTCTCATGCATCCATTTGGGGGTCTATCATCGCAACTTTCATATGTGTCATGGTTGTTGATGCTATACCATCACTTCATGGTTACTGGGCTATCTTTGATGTGGCAAGCACCACATTATTCTGGTTATGTTTGTTTGGAATACTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAGTTTGTTTATCAATATTACTGTCCCGACGATATTCAGATTTCAAGAGAAATCGAGAAGTTTGAGAATAGAAGGGTCAATGGAGATAGACAGATAGAAATGCTTCACATCTCAAATCCACAAAGATAA

Protein sequence

>Msa1245440

MMDTKNPSENSSKFETFMHNSSSRRSSGRNSTREVTFGHSESKPVRYGSKGAVDSEAFSMSQKEISDEDARLIYVDDPDRTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGHFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFSGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVVLCSVTSVCAAVWLKRNKNELNRLPYYRKLDFSKGKEESYQYYGWGVEILFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKASLENEQVEYSLQVNGKVLKPKMRVKVNQELMRLAKSGFASKDGKRIYDFFLALAACNTIVPLVVDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIMIDILGEQQRFNVLGLHEFDSDRKRMSVILGCNDNSVKLFVKGADTSMFSVINKSLNTDIIQDTETHLHSYSSVGLRTLVIGMRDLNASEFDQWHFAFEAASTSMIGRAALLRKVAANVENNLCILGATAIEDKLQQGVPEAIESLRKAGIKVWVLTGDKQETAISIGYSSKLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNVAAPEVGNYIEGSSDGVVSTPMALIIDGTSLVYILDSELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKNRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFVHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVAIFDKDLSKRTLLQSPQLYGAGQRQEAYNKKLFWLTIADTLWQSVVVFFVPLFAYWGSTVDIASMGDLWTISIVILVNLHLAMDVIRWTWISHASIWGSIIATFICVMVVDAIPSLHGYWAIFDVASTTLFWLCLFGILIAALLPRFVVKFVYQYYCPDDIQISREIEKFENRRVNGDRQIEMLHISNPQR*