AlfalfaGEDB | Msa1181210

M. sativa cultivar zhongmu-4 / Msa1181210

KEGG: K05292
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0019538 GO:0019637 GO:0022008 GO:0030154 GO:0030176 GO:0030182 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051402 GO:0070997 GO:0071704 GO:0090407 GO:0097708 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509
PFAM: PF04113.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1181210	sp\|Q969N2\|PIGT_HUMAN	33.841	591	304	18	81	647	28	555	1.43e-82	276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1181210	A0A396GBW5	93.062	663	41	3	53	712	1	661	0.0	1223

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0136090	Msa1181210	0.800208	1.605440e-48	-8.615850e-47
Msa0183990	Msa1181210	0.804960	1.680399e-49	-8.615850e-47
Msa0291320	Msa1181210	0.814073	1.855135e-51	-8.615850e-47
Msa0357530	Msa1181210	0.801551	8.535056e-49	-8.615850e-47
Msa1026650	Msa1181210	0.814899	1.217970e-51	-8.615850e-47
Msa1181210	Msa1273320	0.804192	2.431162e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1181210	MtrunA17_Chr8g0339971	93.062	663	41	3	53	712	1	661	0.0	1223
Msa1181210	MtrunA17_Chr8g0339991	83.860	601	82	1	53	653	1	586	0.0	1014

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1181210	AT3G07140.1	62.124	631	219	6	81	710	29	640	0.0	783
Msa1181210	AT3G07140.2	62.559	633	212	7	81	710	29	639	0.0	781

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Find 147 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAGATTCAACCAAGC+TGG	0.544261	8_1:-15524257	Msa1181210:CDS
AAATGGATTTGGGGAAGAGA+TGG	0.580152	8_1:+15525931	None:intergenic
AACACGTGTAACCAACAAAT+GGG	0.458583	8_1:-15520879	Msa1181210:three_prime_UTR
AAGACACACCAGCTGAGAAA+TGG	0.447027	8_1:+15525914	None:intergenic
AAGCATCAACCTGATGTGGA+GGG	0.647641	8_1:+15524664	None:intergenic
AAGGATGATGACGACGACTG+TGG	0.723942	8_1:+15521119	None:intergenic
AAGTATCTAATACGCCAGAC+AGG	0.484756	8_1:-15524053	Msa1181210:CDS
AATAAGAGCTAGAGGACTCT+AGG	0.491775	8_1:+15524586	None:intergenic
AATAGATGGTCTATCCATTA+AGG	0.350489	8_1:+15524428	None:intergenic
AATCAATGGTAGGTGTGTTT+TGG	0.341691	8_1:-15524208	Msa1181210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGGCCAACATATATAATT+TGG	+	chr8_1:15520861-15520880	None:intergenic	30.0%
AATGATTCTATCATCGTCTT+CGG	-	chr8_1:15521072-15521091	Msa1181210:CDS	30.0%
TATACAGAAAGCAACGAATA+AGG	+	chr8_1:15521330-15521349	None:intergenic	30.0%
CAGATCTTGTATTCAATTTG+AGG	+	chr8_1:15521388-15521407	None:intergenic	30.0%
GTAATAAACTGCATAAAGCA+TGG	-	chr8_1:15521805-15521824	Msa1181210:CDS	30.0%
AATAAACTGCATAAAGCATG+GGG	-	chr8_1:15521807-15521826	Msa1181210:CDS	30.0%
TAGTTTAACCCTTCAATAGT+TGG	-	chr8_1:15521889-15521908	Msa1181210:intron	30.0%
GAAACAAACCAACTATTGAA+GGG	+	chr8_1:15521900-15521919	None:intergenic	30.0%
TGAAACAAACCAACTATTGA+AGG	+	chr8_1:15521901-15521920	None:intergenic	30.0%
TTTGCACATTCACATTATGA+AGG	-	chr8_1:15521926-15521945	Msa1181210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	15520828	15526347	15520828	ID=Msa1181210;Name=Msa1181210
chr8_1	mRNA	15520828	15526347	15520828	ID=Msa1181210-mRNA-1;Parent=Msa1181210;Name=Msa1181210-mRNA-1;_AED=0.25;_eAED=0.25;_QI=41\|1\|1\|1\|1\|1\|5\|215\|712
chr8_1	exon	15520828	15521221	15520828	ID=Msa1181210-mRNA-1:exon:5861;Parent=Msa1181210-mRNA-1
chr8_1	exon	15521697	15521877	15521697	ID=Msa1181210-mRNA-1:exon:5860;Parent=Msa1181210-mRNA-1
chr8_1	exon	15521965	15522111	15521965	ID=Msa1181210-mRNA-1:exon:5859;Parent=Msa1181210-mRNA-1
chr8_1	exon	15523579	15524826	15523579	ID=Msa1181210-mRNA-1:exon:5858;Parent=Msa1181210-mRNA-1
chr8_1	exon	15525923	15526347	15525923	ID=Msa1181210-mRNA-1:exon:5857;Parent=Msa1181210-mRNA-1
chr8_1	five_prime_UTR	15526307	15526347	15526307	ID=Msa1181210-mRNA-1:five_prime_utr;Parent=Msa1181210-mRNA-1
chr8_1	CDS	15525923	15526306	15525923	ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1	CDS	15523579	15524826	15523579	ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1	CDS	15521965	15522111	15521965	ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1	CDS	15521697	15521877	15521697	ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1	CDS	15521043	15521221	15521043	ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1	three_prime_UTR	15520828	15521042	15520828	ID=Msa1181210-mRNA-1:three_prime_utr;Parent=Msa1181210-mRNA-1

Gene Sequence

>Msa1181210

ATGTTGGCCAACATAAAGCCCAAAAATTCAACACGAGAAAGTAACTCCGAAGCTCGCTCGCACAGTGACGTTCGTTCATGGCGGAACTTCTGTAGCTTTGGTACTCTGTACACATCTCTCACAGCAATAAGTTCCAAAGTTAGCAAGCAAGCAACGATGGCTGTTGCTTCAACAACGATTCTCTCTTTTCTTCTCTTTCTTCCAATGATTCTATCATCGTCTTCGGCAAAAGTAGTAGATGAAGAATTTTCAGAGGAATTGCTACTTAAACCCTTACCCGATCGCAAAGTTCTCGCGCATTTTCATTTCCAAACCGAAGCTCCTATTGCTGATCATTCCTTCGCTCGTCATCACCATCTCTTCCCCAAATCCATTTCTCAGCTGGTTAAGAAATTTCACGTTAAAGCAATGGAATTATCTTTCACACAAGGTCGATGGAACTATGAAAGATGGGGTGGATTTGATCCAATATCAAGCCAAAATGCAAAGCCTCCTGGAGTTGAACTGTGGGCAGTCTTTGATGTCCCTCCACATCAGGTTGATGCTTCTTGGAAAAATTTAACCCATTCTCTATCAGGTCTCTTCTGTGCTTCAATAAACTTCCTAGAGTCCTCTAGCTCTTATTCTGCTCCTAAATGGGCATCTCAGTCAGCCTTAGGTAGTTTAAGATATGGCTCACTGCCGCGTGAAGCTGTCTGCACAGAAAATCTTACTCCATGGTTGAAACTCCTTCCTTGTCGAGATAAAGCTGGACTTTCAGCCTTAATGGATAGACCATCTATTTACAGGAGTTTTTATCATTCACAACGATTGCACCTGACAGCATCCAGAGTTCCTGCAGATGGGTTAGATTCAGGAATTATTCTAGAACAAACACTTACAGTTGTACTTCAGCCTGATTTTCAGAAAGCTGGTATGAGCTCTTCCGATGAAATAAAGATTCAACCAAGCTGGTCTTTGAGCTCAATATTTGGACGAAAAATCAATGGTAGGTGTGTTTTGGCTAAGTCGAGTAATGTCTACCTTCAAGTGGAGAGAGGTCTAGTCAATCAACTTGAGAATCTCCAAAAGAATACTGCTGCATATGCTGCTAATGACACAAGTATAGACGTTTTGAGAAGGAATCTTGTCTTTGAAGTATCTAATACGCCAGACAGGGTTCATAGAGAACTGGAAAAGAGCTCATCAATTATGTATGAATATTCAATCAAAGAATACAATGACACTGAACAATTTGATTTAAGCTTAACATGGAAGTATCCAGTTGTTTGGTCCTCCTCACATGCACCTTTCTATGCCAGTAGATTTTTAATGGGCAGTGGAAACGAAAGGGGTTCGATTGCAATATCCTTGAAATCTACAGAATTGACCAAGGACTTCATAGCAGCCAATAATGTTGAAGAGAAGTGTAAGTTACAAGTTAATGTGCTGCAAATTGTGCCTTGGTATATTAAGGTATATTATCATACCTTACAATTATTAGTTGATGAAAAGCCTCAAGCTGTCACAGACTTTGTTGAGAAAATGAGTGTTTCGCCTTCTGAAGACAAAGTATCACCAGGAGTGATGGAGCTGGTCCTCAGATTTCCTTGTGAGATTAAATCTGCTGTTCTAAATATAGAGTTTGATAAGGGCTTCTTACACATTGATGAATACCCACCAGATGCTAATCAGGGATTTGACATCCCATCAGCAATAATAAGCTTTCCTGACTTTCATGCTGGTTTGCAATTTTCTGATGAGTCTATAAGCAAGTCGCCAATGTTGTCTAGATTACAGGAAAAGAGCCCTGTTCTCTCTTACACAGAAGTTTTGCTTGTACCCTTGACAACTCCTGATTTCAGTATGCCTTACAACGTCATCACAATTACTTGCACAGTTTTTGCTTTGTATTTTGGATCCTTGCTAAATGTACTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGATGCAAACAAAGTTGTGTTCCTTCGTCGAATACTGAATAAACTCAGGAGAAGATCATCAGAATCCACTCAACCACAAGAACCACAGTCGTCGTCATCATCCTTCATTAGTCCAAAATTGATTTTTAAAGTGCTATTGGTGGCCGGAATTGCTGTTGTGTGGCAATACTACTTGAAATGA

Protein sequence

>Msa1181210

MLANIKPKNSTRESNSEARSHSDVRSWRNFCSFGTLYTSLTAISSKVSKQATMAVASTTILSFLLFLPMILSSSSAKVVDEEFSEELLLKPLPDRKVLAHFHFQTEAPIADHSFARHHHLFPKSISQLVKKFHVKAMELSFTQGRWNYERWGGFDPISSQNAKPPGVELWAVFDVPPHQVDASWKNLTHSLSGLFCASINFLESSSSYSAPKWASQSALGSLRYGSLPREAVCTENLTPWLKLLPCRDKAGLSALMDRPSIYRSFYHSQRLHLTASRVPADGLDSGIILEQTLTVVLQPDFQKAGMSSSDEIKIQPSWSLSSIFGRKINGRCVLAKSSNVYLQVERGLVNQLENLQKNTAAYAANDTSIDVLRRNLVFEVSNTPDRVHRELEKSSSIMYEYSIKEYNDTEQFDLSLTWKYPVVWSSSHAPFYASRFLMGSGNERGSIAISLKSTELTKDFIAANNVEEKCKLQVNVLQIVPWYIKVYYHTLQLLVDEKPQAVTDFVEKMSVSPSEDKVSPGVMELVLRFPCEIKSAVLNIEFDKGFLHIDEYPPDANQGFDIPSAIISFPDFHAGLQFSDESISKSPMLSRLQEKSPVLSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLNVLRRRVGEEERLLKNKDANKVVFLRRILNKLRRRSSESTQPQEPQSSSSSFISPKLIFKVLLVAGIAVVWQYYLK*