AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1181210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181210 MtrunA17_Chr8g0339971 93.062 663 41 3 53 712 1 661 0.0 1223
Msa1181210 MtrunA17_Chr8g0339991 83.860 601 82 1 53 653 1 586 0.0 1014
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181210 AT3G07140.1 62.124 631 219 6 81 710 29 640 0.0 783
Msa1181210 AT3G07140.2 62.559 633 212 7 81 710 29 639 0.0 781

Find 147 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCCAACATATATAATT+TGG 0.098893 8_1:+15526295 None:intergenic
ACACTTCTCTTCAACATTAT+TGG 0.141474 8_1:+15523801 None:intergenic
CTCCAGGAGGCTTTGCATTT+TGG 0.152387 8_1:+15524712 None:intergenic
CACATCAGGTTGATGCTTCT+TGG 0.204467 8_1:-15524659 Msa1181210:CDS
GCTCTTATTCTGCTCCTAAA+TGG 0.218562 8_1:-15524572 Msa1181210:CDS
AGCTGGACTTTCAGCCTTAA+TGG 0.236299 8_1:-15524442 Msa1181210:CDS
AATTGTGCCTTGGTATATTA+AGG 0.245068 8_1:-15523755 Msa1181210:CDS
CATATGCAGCAGTATTCTTT+TGG 0.251853 8_1:+15524124 None:intergenic
AATGGGTTCTAAACAAGTTT+TGG 0.299059 8_1:-15520862 Msa1181210:three_prime_UTR
TGGATAGACCATCTATTTAC+AGG 0.306661 8_1:-15524422 Msa1181210:CDS
GCCAATGTTGTCTAGATTAC+AGG 0.307072 8_1:-15521964 Msa1181210:intron
TGGTCTTTGAGCTCAATATT+TGG 0.318281 8_1:-15524237 Msa1181210:CDS
GCTGACTGAGATGCCCATTT+AGG 0.323816 8_1:+15524558 None:intergenic
ACCAGCTGAGAAATGGATTT+GGG 0.333090 8_1:+15525921 None:intergenic
AATCAATGGTAGGTGTGTTT+TGG 0.341691 8_1:-15524208 Msa1181210:CDS
CCTGCAGATGGGTTAGATTC+AGG 0.347012 8_1:-15524354 Msa1181210:CDS
AATTTAACCCATTCTCTATC+AGG 0.347377 8_1:-15524633 Msa1181210:CDS
AATAGATGGTCTATCCATTA+AGG 0.350489 8_1:+15524428 None:intergenic
ATACCCACCAGATGCTAATC+AGG 0.352369 8_1:-15522069 Msa1181210:CDS
CATGGAAGTATCCAGTTGTT+TGG 0.361469 8_1:-15523939 Msa1181210:CDS
CTTTGATGTCCCTCCACATC+AGG 0.367222 8_1:-15524673 Msa1181210:CDS
TTGGCCAACATATATAATTT+GGG 0.372535 8_1:+15526296 None:intergenic
GGTCAATTCTGTAGATTTCA+AGG 0.377594 8_1:+15523840 None:intergenic
CACCAGCTGAGAAATGGATT+TGG 0.379188 8_1:+15525920 None:intergenic
TTCATCAACTAATAATTGTA+AGG 0.388494 8_1:+15523720 None:intergenic
TTGCCACACAACAGCAATTC+CGG 0.391084 8_1:+15521058 None:intergenic
CGTTGCTTGCTTGCTAACTT+TGG 0.396458 8_1:+15526151 None:intergenic
TGGCGGAACTTCTGTAGCTT+TGG 0.398643 8_1:-15526206 Msa1181210:CDS
CCTCCTCTCCAACTCGTCTT+CGG 0.402744 8_1:+15521718 None:intergenic
TAACACGTGTAACCAACAAA+TGG 0.404922 8_1:-15520880 Msa1181210:three_prime_UTR
GAGAACTTTGCGATCGGGTA+AGG 0.407421 8_1:+15526013 None:intergenic
CCCCAAATCCATTTCTCAGC+TGG 0.408253 8_1:-15525922 Msa1181210:intron
ATACCAGCTTTCTGAAAATC+AGG 0.412645 8_1:+15524294 None:intergenic
GCCTTAGGTAGTTTAAGATA+TGG 0.428821 8_1:-15524537 Msa1181210:CDS
CTAGACCTCTCTCCACTTGA+AGG 0.430577 8_1:+15524166 None:intergenic
CTTGTTTAGAACCCATTTGT+TGG 0.432029 8_1:+15520868 None:intergenic
CAGCAATAGGAGCTTCGGTT+TGG 0.432898 8_1:+15525976 None:intergenic
CTCTTATTCTGCTCCTAAAT+GGG 0.435892 8_1:-15524571 Msa1181210:CDS
GTCACTGTGCGAGCGAGCTT+CGG 0.436544 8_1:+15526238 None:intergenic
ACTTCTGTGTAAGAGAGAAC+AGG 0.439686 8_1:+15521846 None:intergenic
GAAGACGATGATAGAATCAT+TGG 0.440287 8_1:+15526083 None:intergenic
CAGGAACTCTGGATGCTGTC+AGG 0.440783 8_1:+15524373 None:intergenic
GAAATTAATGCAAGTACAAT+GGG 0.442761 8_1:+15520940 None:intergenic
TACAACTAACACTACAAAGT+TGG 0.444422 8_1:+15521014 None:intergenic
AAGACACACCAGCTGAGAAA+TGG 0.447027 8_1:+15525914 None:intergenic
TGTGAGGAGGACCAAACAAC+TGG 0.456188 8_1:+15523928 None:intergenic
AACACGTGTAACCAACAAAT+GGG 0.458583 8_1:-15520879 Msa1181210:three_prime_UTR
GGAAAGCTTATTATTGCTGA+TGG 0.462385 8_1:+15522035 None:intergenic
GCGAAGGAATGATCAGCAAT+AGG 0.464335 8_1:+15525963 None:intergenic
TAACCCATCTGCAGGAACTC+TGG 0.466017 8_1:+15524362 None:intergenic
AATGATTCTATCATCGTCTT+CGG 0.467915 8_1:-15526081 Msa1181210:CDS
TGCAAACCAGCATGAAAGTC+AGG 0.468927 8_1:+15522014 None:intergenic
GAAATTTCACGTTAAAGCAA+TGG 0.469817 8_1:-15524799 Msa1181210:CDS
TCTAAATATAGAGTTTGATA+AGG 0.472380 8_1:-15523578 Msa1181210:intron
AGAAGAGACCTGATAGAGAA+TGG 0.474703 8_1:+15524625 None:intergenic
GTCGATGGAACTATGAAAGA+TGG 0.474999 8_1:-15524758 Msa1181210:CDS
ATGATCAGCAATAGGAGCTT+CGG 0.480173 8_1:+15525971 None:intergenic
AGCCAAAATGCAAAGCCTCC+TGG 0.482782 8_1:-15524714 Msa1181210:CDS
AAGTATCTAATACGCCAGAC+AGG 0.484756 8_1:-15524053 Msa1181210:CDS
TTGTAAGGCATACTGAAATC+AGG 0.485942 8_1:+15521801 None:intergenic
TGCGCGAGAACTTTGCGATC+GGG 0.486282 8_1:+15526008 None:intergenic
AATAAGAGCTAGAGGACTCT+AGG 0.491775 8_1:+15524586 None:intergenic
AGACAGGGTTCATAGAGAAC+TGG 0.493028 8_1:-15524037 Msa1181210:CDS
TGGGCATCTCAGTCAGCCTT+AGG 0.494821 8_1:-15524552 Msa1181210:CDS
GTAATTGTGATGACGTTGTA+AGG 0.498233 8_1:+15521786 None:intergenic
AGCTTTCCTGACTTTCATGC+TGG 0.501238 8_1:-15522020 Msa1181210:CDS
AGTTCTCTATGAACCCTGTC+TGG 0.503743 8_1:+15524039 None:intergenic
ATTGGCTGCTATGAAGTCCT+TGG 0.505818 8_1:+15523819 None:intergenic
TCAAATCCCTGATTAGCATC+TGG 0.512612 8_1:+15522062 None:intergenic
GCATCCAGAGTTCCTGCAGA+TGG 0.518163 8_1:-15524366 Msa1181210:CDS
AGAAATTAATGCAAGTACAA+TGG 0.518974 8_1:+15520939 None:intergenic
CAAAGTATCACCAGGAGTGA+TGG 0.519873 8_1:-15523641 Msa1181210:CDS
CTGTGGTTCTTGTGGTTGAG+TGG 0.525282 8_1:+15521136 None:intergenic
CCTGAATCTAACCCATCTGC+AGG 0.526279 8_1:+15524354 None:intergenic
GCCATATCTTAAACTACCTA+AGG 0.530459 8_1:+15524536 None:intergenic
ACAAAGTCTGTGACAGCTTG+AGG 0.532872 8_1:+15523694 None:intergenic
AATGTACTCCGAAGACGAGT+TGG 0.532960 8_1:-15521726 Msa1181210:CDS
GAAGAGACCTGATAGAGAAT+GGG 0.534708 8_1:+15524626 None:intergenic
AGGACCAGCTCCATCACTCC+TGG 0.536063 8_1:+15523631 None:intergenic
TGGTTGAATCTTTATTTCAT+CGG 0.538298 8_1:+15524263 None:intergenic
TCGATGGAACTATGAAAGAT+GGG 0.539612 8_1:-15524757 Msa1181210:CDS
GCCTCCTGGAGTTGAACTGT+GGG 0.543091 8_1:-15524700 Msa1181210:CDS
TTTAAAGTGCTATTGGTGGC+CGG 0.543345 8_1:-15521077 Msa1181210:CDS
AAATAAAGATTCAACCAAGC+TGG 0.544261 8_1:-15524257 Msa1181210:CDS
AGAACTTTGCGATCGGGTAA+GGG 0.546258 8_1:+15526014 None:intergenic
AATGGGCAGTGGAAACGAAA+GGG 0.546414 8_1:-15523878 Msa1181210:CDS
TATCTTTCACACAAGGTCGA+TGG 0.560484 8_1:-15524773 Msa1181210:CDS
GGTGATACTTTGTCTTCAGA+AGG 0.560976 8_1:+15523652 None:intergenic
GAAAGCTTATTATTGCTGAT+GGG 0.561165 8_1:+15522036 None:intergenic
CAAGAAGCATCAACCTGATG+TGG 0.562937 8_1:+15524660 None:intergenic
AGGGCCCAAATTATATATGT+TGG 0.563289 8_1:-15526300 Msa1181210:exon
CTTCCTTGTCGAGATAAAGC+TGG 0.565607 8_1:-15524459 Msa1181210:CDS
CATCCAGAGTTCCTGCAGAT+GGG 0.568693 8_1:-15524365 Msa1181210:CDS
ATTGAGCTCAAAGACCAGCT+TGG 0.574813 8_1:+15524243 None:intergenic
GACGACGACTGTGGTTCTTG+TGG 0.578532 8_1:+15521128 None:intergenic
AAATGGATTTGGGGAAGAGA+TGG 0.580152 8_1:+15525931 None:intergenic
GGCATAGAAAGGTGCATGTG+AGG 0.582490 8_1:+15523912 None:intergenic
AATGCAAGTACAATGGGCAG+TGG 0.583341 8_1:+15520946 None:intergenic
TAATGGGCAGTGGAAACGAA+AGG 0.583530 8_1:-15523879 Msa1181210:CDS
GAAGCATCAACCTGATGTGG+AGG 0.588264 8_1:+15524663 None:intergenic
ATGTGCTGCAAATTGTGCCT+TGG 0.588552 8_1:-15523765 Msa1181210:CDS
AGGAGCAGAATAAGAGCTAG+AGG 0.588996 8_1:+15524578 None:intergenic
CTTCTGTGTAAGAGAGAACA+GGG 0.589432 8_1:+15521847 None:intergenic
GCACAGAAAATCTTACTCCA+TGG 0.592172 8_1:-15524491 Msa1181210:CDS
CAGCTTTATCTCGACAAGGA+AGG 0.593637 8_1:+15524460 None:intergenic
ACTAACACTACAAAGTTGGA+TGG 0.594547 8_1:+15521018 None:intergenic
GTCGAATACTGAATAAACTC+AGG 0.595554 8_1:-15521175 Msa1181210:CDS
GAGTAATGTCTACCTTCAAG+TGG 0.595849 8_1:-15524178 Msa1181210:CDS
ACTGAAATCAGGAGTTGTCA+AGG 0.599468 8_1:+15521812 None:intergenic
ATGCGCGAGAACTTTGCGAT+CGG 0.602830 8_1:+15526007 None:intergenic
AATCCCTGATTAGCATCTGG+TGG 0.604542 8_1:+15522065 None:intergenic
TCTTCGGAGTACATTTAGCA+AGG 0.605313 8_1:+15521734 None:intergenic
GAGATGGTGATGACGAGCGA+AGG 0.605747 8_1:+15525947 None:intergenic
ACTGCCCACAGTTCAACTCC+AGG 0.606672 8_1:+15524696 None:intergenic
ATCCCTGATTAGCATCTGGT+GGG 0.615470 8_1:+15522066 None:intergenic
AGCCTCCTGGAGTTGAACTG+TGG 0.620819 8_1:-15524701 Msa1181210:CDS
GTCTACCTTCAAGTGGAGAG+AGG 0.621948 8_1:-15524171 Msa1181210:CDS
TACCCACCAGATGCTAATCA+GGG 0.624583 8_1:-15522068 Msa1181210:CDS
CTGAAATCAGGAGTTGTCAA+GGG 0.625231 8_1:+15521813 None:intergenic
ATCACCAGGAGTGATGGAGC+TGG 0.626886 8_1:-15523635 Msa1181210:CDS
ACCTGTAATCTAGACAACAT+TGG 0.628281 8_1:+15521963 None:intergenic
AATTTGATTTAAGCTTAACA+TGG 0.630678 8_1:-15523957 Msa1181210:CDS
AGTTAGCAAGCAAGCAACGA+TGG 0.632175 8_1:-15526147 Msa1181210:CDS
CCAGCTGAGAAATGGATTTG+GGG 0.632982 8_1:+15525922 None:intergenic
TGGAACTATGAAAGATGGGG+TGG 0.633974 8_1:-15524753 Msa1181210:CDS
TTGGTTACACGTGTTAAATG+TGG 0.636715 8_1:+15520887 None:intergenic
CCGAAGACGAGTTGGAGAGG+AGG 0.641791 8_1:-15521718 Msa1181210:CDS
ATGGGCAGTGGAAACGAAAG+GGG 0.643566 8_1:-15523877 Msa1181210:CDS
ACTCCGAAGACGAGTTGGAG+AGG 0.645411 8_1:-15521721 Msa1181210:CDS
TCTGAAGACAAAGTATCACC+AGG 0.647486 8_1:-15523649 Msa1181210:CDS
AAGCATCAACCTGATGTGGA+GGG 0.647641 8_1:+15524664 None:intergenic
ATAGAAAGGTGCATGTGAGG+AGG 0.648484 8_1:+15523915 None:intergenic
TAATCTCACAAGGAAATCTG+AGG 0.648866 8_1:+15523611 None:intergenic
GTTTATTCAGTATTCGACGA+AGG 0.650092 8_1:+15521180 None:intergenic
ACAGCAGATTTAATCTCACA+AGG 0.652768 8_1:+15523601 None:intergenic
TAATATACCTTAATATACCA+AGG 0.654694 8_1:+15523748 None:intergenic
TGGCCGGAATTGCTGTTGTG+TGG 0.659350 8_1:-15521061 Msa1181210:CDS
AGTATCTAATACGCCAGACA+GGG 0.665813 8_1:-15524052 Msa1181210:CDS
CGATGGAACTATGAAAGATG+GGG 0.668439 8_1:-15524756 Msa1181210:CDS
GAAATCTACAGAATTGACCA+AGG 0.675528 8_1:-15523836 Msa1181210:CDS
ATGGAATTATCTTTCACACA+AGG 0.675732 8_1:-15524780 Msa1181210:CDS
CAAGGAAGGAGTTTCAACCA+TGG 0.692207 8_1:+15524474 None:intergenic
AGTCCAGCTTTATCTCGACA+AGG 0.709264 8_1:+15524456 None:intergenic
GCCCACAGTTCAACTCCAGG+AGG 0.711482 8_1:+15524699 None:intergenic
AAGGATGATGACGACGACTG+TGG 0.723942 8_1:+15521119 None:intergenic
TCTGTGCAGACAGCTTCACG+CGG 0.737448 8_1:+15524507 None:intergenic
ACAGTGACGTTCGTTCATGG+CGG 0.743306 8_1:-15526223 Msa1181210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTCTTTTTCTTT+TGG - chr8_1:15523624-15523643 Msa1181210:CDS 10.0%
!! TATAAAAAAATGTAAATCAT+AGG + chr8_1:15524170-15524189 None:intergenic 10.0%
!! TTCTGTATAAATTGTTAATT+TGG - chr8_1:15521341-15521360 Msa1181210:intron 15.0%
!! AATCAAGAATTTAATAATCT+AGG + chr8_1:15524346-15524365 None:intergenic 15.0%
!! AAAAACAATAAAAAAAGGCT+AGG - chr8_1:15520833-15520852 Msa1181210:three_prime_UTR 20.0%
!! AAAACAATAAAAAAAGGCTA+GGG - chr8_1:15520834-15520853 Msa1181210:three_prime_UTR 20.0%
!! TATGTAAAAGAATGTTGATA+AGG - chr8_1:15522080-15522099 Msa1181210:CDS 20.0%
!! ACATGTTAATTAGTATATTC+AGG + chr8_1:15522308-15522327 None:intergenic 20.0%
!!! AATTTGATTTAAGCTTAACA+TGG - chr8_1:15523196-15523215 Msa1181210:intron 20.0%
!! TAATATACCTTAATATACCA+AGG + chr8_1:15523408-15523427 None:intergenic 20.0%
!! TTCATCAACTAATAATTGTA+AGG + chr8_1:15523436-15523455 None:intergenic 20.0%
!! TCTAAATATAGAGTTTGATA+AGG - chr8_1:15523575-15523594 Msa1181210:intron 20.0%
!! TGTTTAATAACATTAACTTC+CGG + chr8_1:15523684-15523703 None:intergenic 20.0%
!! TAGACTGTTAATGATATTAT+AGG - chr8_1:15523744-15523763 Msa1181210:CDS 20.0%
!! TAATGATATTATAGGAAAGT+AGG - chr8_1:15523752-15523771 Msa1181210:CDS 20.0%
!!! TTGAATTTGAGTTATCATAA+AGG - chr8_1:15524470-15524489 Msa1181210:CDS 20.0%
!!! TGAATTTGAGTTATCATAAA+GGG - chr8_1:15524471-15524490 Msa1181210:CDS 20.0%
!! AAGAAGATAAATGCTTAAAT+AGG + chr8_1:15524730-15524749 None:intergenic 20.0%
!!! TTGTTCTAACATATTTTTGT+TGG - chr8_1:15525030-15525049 Msa1181210:intron 20.0%
!! GAAAACAATCTTATATTTAC+TGG + chr8_1:15525249-15525268 None:intergenic 20.0%
!! AAAAAAAAAAACCATGTAGA+AGG + chr8_1:15525670-15525689 None:intergenic 20.0%
!! ATTGCAAAAAAAATTAGTCA+TGG + chr8_1:15525727-15525746 None:intergenic 20.0%
!! ATCTAAAAACAGAAAAATGT+CGG + chr8_1:15525936-15525955 None:intergenic 20.0%
!!! AGCACTTTAAAAATCAATTT+TGG + chr8_1:15526067-15526086 None:intergenic 20.0%
!!! ATTGATTTTTAAAGTGCTAT+TGG - chr8_1:15526069-15526088 Msa1181210:CDS 20.0%
! TTGGCCAACATATATAATTT+GGG + chr8_1:15520860-15520879 None:intergenic 25.0%
! TAATAAACTGCATAAAGCAT+GGG - chr8_1:15521806-15521825 Msa1181210:CDS 25.0%
! CTTAAAGTACAATACTTAGA+CGG + chr8_1:15521855-15521874 None:intergenic 25.0%
!! ATTCTTTTACATAGTAGCAT+AGG + chr8_1:15522073-15522092 None:intergenic 25.0%
! TGAATAATGCAAGAATTTAG+AGG + chr8_1:15522118-15522137 None:intergenic 25.0%
!! ATAATGCTTCTATAATTTGC+AGG + chr8_1:15522274-15522293 None:intergenic 25.0%
! TAAAAACTCCTGTAAATAGA+TGG + chr8_1:15522742-15522761 None:intergenic 25.0%
!! TGGTTGAATCTTTATTTCAT+CGG + chr8_1:15522893-15522912 None:intergenic 25.0%
! ATATTTGGACGAAAAATCAA+TGG - chr8_1:15522931-15522950 Msa1181210:intron 25.0%
!! TATGCCAGTAGATTTTTAAT+GGG - chr8_1:15523258-15523277 Msa1181210:intron 25.0%
! GGCTTACACTTAAAAAAAAA+GGG + chr8_1:15524078-15524097 None:intergenic 25.0%
!!! TTTTTTTATATTTCTGCCAC+AGG - chr8_1:15524575-15524594 Msa1181210:CDS 25.0%
! CCTACATTCATGTTTAATTA+GGG + chr8_1:15524820-15524839 None:intergenic 25.0%
! ACCTACATTCATGTTTAATT+AGG + chr8_1:15524821-15524840 None:intergenic 25.0%
! CATATCTACAAATAAGTTCT+TGG + chr8_1:15524896-15524915 None:intergenic 25.0%
!! TATGTTCATTAGACCATTTT+AGG - chr8_1:15524923-15524942 Msa1181210:intron 25.0%
!! ACAGTTTTTGCTTTGTATTT+TGG - chr8_1:15525394-15525413 Msa1181210:intron 25.0%
!!! GAAAGACTTTTGAAAAACAA+AGG - chr8_1:15525457-15525476 Msa1181210:intron 25.0%
!! AATCAATTTTGGACTAATGA+AGG + chr8_1:15526056-15526075 None:intergenic 25.0%
! GAAATTAATGCAAGTACAAT+GGG + chr8_1:15526216-15526235 None:intergenic 25.0%
! AGAAATTAATGCAAGTACAA+TGG + chr8_1:15526217-15526236 None:intergenic 25.0%
GTTGGCCAACATATATAATT+TGG + chr8_1:15520861-15520880 None:intergenic 30.0%
!! TGAATTTTTGGGCTTTATGT+TGG + chr8_1:15520879-15520898 None:intergenic 30.0%
! CTTTCTCGTGTTGAATTTTT+GGG + chr8_1:15520890-15520909 None:intergenic 30.0%
! ACTTTCTCGTGTTGAATTTT+TGG + chr8_1:15520891-15520910 None:intergenic 30.0%
AATGATTCTATCATCGTCTT+CGG - chr8_1:15521072-15521091 Msa1181210:CDS 30.0%
! AGTAGATGAAGAATTTTCAG+AGG - chr8_1:15521102-15521121 Msa1181210:CDS 30.0%
! ACTTTCCTCTTTCTCATTTT+AGG - chr8_1:15521266-15521285 Msa1181210:intron 30.0%
! CTTTCCTCTTTCTCATTTTA+GGG - chr8_1:15521267-15521286 Msa1181210:intron 30.0%
TATACAGAAAGCAACGAATA+AGG + chr8_1:15521330-15521349 None:intergenic 30.0%
CAGATCTTGTATTCAATTTG+AGG + chr8_1:15521388-15521407 None:intergenic 30.0%
! GAGTTTAAGGTATAACTGAA+GGG + chr8_1:15521452-15521471 None:intergenic 30.0%
! AGAGTTTAAGGTATAACTGA+AGG + chr8_1:15521453-15521472 None:intergenic 30.0%
GTAATAAACTGCATAAAGCA+TGG - chr8_1:15521805-15521824 Msa1181210:CDS 30.0%
AATAAACTGCATAAAGCATG+GGG - chr8_1:15521807-15521826 Msa1181210:CDS 30.0%
TAGTTTAACCCTTCAATAGT+TGG - chr8_1:15521889-15521908 Msa1181210:intron 30.0%
GAAACAAACCAACTATTGAA+GGG + chr8_1:15521900-15521919 None:intergenic 30.0%
TGAAACAAACCAACTATTGA+AGG + chr8_1:15521901-15521920 None:intergenic 30.0%
TTTGCACATTCACATTATGA+AGG - chr8_1:15521926-15521945 Msa1181210:intron 30.0%
TTGCACATTCACATTATGAA+GGG - chr8_1:15521927-15521946 Msa1181210:intron 30.0%
CAAAAGCAAAATCCTTTACT+TGG - chr8_1:15522140-15522159 Msa1181210:intron 30.0%
! ATTAACATGTTGATTAGTGC+TGG - chr8_1:15522318-15522337 Msa1181210:intron 30.0%
GAAATTTCACGTTAAAGCAA+TGG - chr8_1:15522354-15522373 Msa1181210:intron 30.0%
ATGGAATTATCTTTCACACA+AGG - chr8_1:15522373-15522392 Msa1181210:intron 30.0%
!!! TTTGCATTTTGGCTTGATAT+TGG + chr8_1:15522433-15522452 None:intergenic 30.0%
AATTTAACCCATTCTCTATC+AGG - chr8_1:15522520-15522539 Msa1181210:intron 30.0%
AATAGATGGTCTATCCATTA+AGG + chr8_1:15522728-15522747 None:intergenic 30.0%
AAATAAAGATTCAACCAAGC+TGG - chr8_1:15522896-15522915 Msa1181210:intron 30.0%
AAAAATCTACTGGCATAGAA+AGG + chr8_1:15523255-15523274 None:intergenic 30.0%
! CTATGCCAGTAGATTTTTAA+TGG - chr8_1:15523257-15523276 Msa1181210:intron 30.0%
ACACTTCTCTTCAACATTAT+TGG + chr8_1:15523355-15523374 None:intergenic 30.0%
AATTGTGCCTTGGTATATTA+AGG - chr8_1:15523398-15523417 Msa1181210:intron 30.0%
CAAACTTTGAATAGTTCAGA+AGG + chr8_1:15523819-15523838 None:intergenic 30.0%
CTTCTGAACTATTCAAAGTT+TGG - chr8_1:15523817-15523836 Msa1181210:CDS 30.0%
! TAAAAAGCCAAGTTTGAGAT+GGG + chr8_1:15523900-15523919 None:intergenic 30.0%
TTAAAAAGCCAAGTTTGAGA+TGG + chr8_1:15523901-15523920 None:intergenic 30.0%
GGGCTTACACTTAAAAAAAA+AGG + chr8_1:15524079-15524098 None:intergenic 30.0%
TGAAGTATGAACCAGAAAAT+GGG + chr8_1:15524099-15524118 None:intergenic 30.0%
TCATTATGAGTTACTTGAGA+TGG - chr8_1:15524120-15524139 Msa1181210:CDS 30.0%
AAAACTGACAATGTTGTAAC+TGG - chr8_1:15524386-15524405 Msa1181210:CDS 30.0%
CAAACTTTGTTAGAATGTCT+TGG + chr8_1:15524453-15524472 None:intergenic 30.0%
! TTTGAGTTATCATAAAGGGT+AGG - chr8_1:15524475-15524494 Msa1181210:CDS 30.0%
CTCAATCAAAAGAGTAACTA+GGG + chr8_1:15524630-15524649 None:intergenic 30.0%
ACTCAATCAAAAGAGTAACT+AGG + chr8_1:15524631-15524650 None:intergenic 30.0%
! ATCAATGAGTTGAAGAAACT+GGG - chr8_1:15524765-15524784 Msa1181210:CDS 30.0%
TTTAATTAGGGCCAATTAAC+AGG + chr8_1:15524808-15524827 None:intergenic 30.0%
CCCTAATTAAACATGAATGT+AGG - chr8_1:15524817-15524836 Msa1181210:intron 30.0%
!! TTCATTAGACCATTTTAGGA+TGG - chr8_1:15524927-15524946 Msa1181210:intron 30.0%
! TTTTTCCATCCATCCTAAAA+TGG + chr8_1:15524939-15524958 None:intergenic 30.0%
!!! ATTTTTGTTGGTTTGCACAT+AGG - chr8_1:15525042-15525061 Msa1181210:intron 30.0%
!!! TTTTTGTTGGTTTGCACATA+GGG - chr8_1:15525043-15525062 Msa1181210:intron 30.0%
GAAAGCTTATTATTGCTGAT+GGG + chr8_1:15525120-15525139 None:intergenic 30.0%
TTGTCTAGATTACAGGTTAT+TGG - chr8_1:15525196-15525215 Msa1181210:intron 30.0%
GAGTTATGACCAAAAAAAGA+GGG + chr8_1:15525227-15525246 None:intergenic 30.0%
! TGTGTTCTATTTTATGCTTC+AGG + chr8_1:15525601-15525620 None:intergenic 30.0%
TACATGTAGTAATCGAAAAC+TGG + chr8_1:15525793-15525812 None:intergenic 30.0%
GTTATCTAATATCTAGTGCA+TGG - chr8_1:15525856-15525875 Msa1181210:intron 30.0%
!!! GATTTTTAAAGTGCTATTGG+TGG - chr8_1:15526072-15526091 Msa1181210:CDS 30.0%
TACAACTAACACTACAAAGT+TGG + chr8_1:15526142-15526161 None:intergenic 30.0%
!!! AATGGGTTCTAAACAAGTTT+TGG - chr8_1:15526291-15526310 Msa1181210:exon 30.0%
AGGGCCCAAATTATATATGT+TGG - chr8_1:15520853-15520872 Msa1181210:three_prime_UTR 35.0%
GAAGACGATGATAGAATCAT+TGG + chr8_1:15521073-15521092 None:intergenic 35.0%
CTAACCCTAAAATGAGAAAG+AGG + chr8_1:15521274-15521293 None:intergenic 35.0%
!!! CTCTTTCTCATTTTAGGGTT+AGG - chr8_1:15521272-15521291 Msa1181210:intron 35.0%
AGGGTTTAACGATCATATCT+TGG + chr8_1:15521433-15521452 None:intergenic 35.0%
TCGACTCATAGAAGAGTTTA+AGG + chr8_1:15521465-15521484 None:intergenic 35.0%
! GACTGACTCAAATTCTACTA+TGG - chr8_1:15521635-15521654 Msa1181210:intron 35.0%
ATTCAACTCTCTTCGTCAAA+TGG + chr8_1:15521692-15521711 None:intergenic 35.0%
ATAAACTGCATAAAGCATGG+GGG - chr8_1:15521808-15521827 Msa1181210:CDS 35.0%
CATAGTAGCATAGGACAAAA+TGG + chr8_1:15522064-15522083 None:intergenic 35.0%
TCGATGGAACTATGAAAGAT+GGG - chr8_1:15522396-15522415 Msa1181210:intron 35.0%
CTCTTATTCTGCTCCTAAAT+GGG - chr8_1:15522582-15522601 Msa1181210:intron 35.0%
! GCCTTAGGTAGTTTAAGATA+TGG - chr8_1:15522616-15522635 Msa1181210:intron 35.0%
GCCATATCTTAAACTACCTA+AGG + chr8_1:15522620-15522639 None:intergenic 35.0%
TGGATAGACCATCTATTTAC+AGG - chr8_1:15522731-15522750 Msa1181210:intron 35.0%
! ATACCAGCTTTCTGAAAATC+AGG + chr8_1:15522862-15522881 None:intergenic 35.0%
TGGTCTTTGAGCTCAATATT+TGG - chr8_1:15522916-15522935 Msa1181210:intron 35.0%
TTGGACGAAAAATCAATGGT+AGG - chr8_1:15522935-15522954 Msa1181210:intron 35.0%
! AATCAATGGTAGGTGTGTTT+TGG - chr8_1:15522945-15522964 Msa1181210:intron 35.0%
! CATATGCAGCAGTATTCTTT+TGG + chr8_1:15523032-15523051 None:intergenic 35.0%
!!! CAAGTATAGACGTTTTGAGA+AGG - chr8_1:15523064-15523083 Msa1181210:intron 35.0%
ACTGCCCATTAAAAATCTAC+TGG + chr8_1:15523265-15523284 None:intergenic 35.0%
!! AGTAGATTTTTAATGGGCAG+TGG - chr8_1:15523264-15523283 Msa1181210:intron 35.0%
GGTCAATTCTGTAGATTTCA+AGG + chr8_1:15523316-15523335 None:intergenic 35.0%
GAAATCTACAGAATTGACCA+AGG - chr8_1:15523317-15523336 Msa1181210:intron 35.0%
TAATCTCACAAGGAAATCTG+AGG + chr8_1:15523545-15523564 None:intergenic 35.0%
ACAGCAGATTTAATCTCACA+AGG + chr8_1:15523555-15523574 None:intergenic 35.0%
TTGGATATTTACCTCACTCT+TGG - chr8_1:15523643-15523662 Msa1181210:CDS 35.0%
! TTGGTTTGATTAACCAACTC+CGG - chr8_1:15523662-15523681 Msa1181210:CDS 35.0%
ATAACATTAACTTCCGGAGT+TGG + chr8_1:15523678-15523697 None:intergenic 35.0%
! TTAAGTGTAAGCCCATTTTC+TGG - chr8_1:15524085-15524104 Msa1181210:CDS 35.0%
GTGAAGTATGAACCAGAAAA+TGG + chr8_1:15524100-15524119 None:intergenic 35.0%
TCAAGCCCATTTCGTTAAAT+TGG - chr8_1:15524317-15524336 Msa1181210:CDS 35.0%
CAAGCCCATTTCGTTAAATT+GGG - chr8_1:15524318-15524337 Msa1181210:CDS 35.0%
TCAAAAGAGTAACTAGGGAA+AGG + chr8_1:15524625-15524644 None:intergenic 35.0%
CTAAACATCTAAACCAAGTC+AGG + chr8_1:15524663-15524682 None:intergenic 35.0%
! GATCAATGAGTTGAAGAAAC+TGG - chr8_1:15524764-15524783 Msa1181210:CDS 35.0%
ATAAGTTCTTGGCACATTGA+TGG + chr8_1:15524885-15524904 None:intergenic 35.0%
!!! TTAGACCATTTTAGGATGGA+TGG - chr8_1:15524931-15524950 Msa1181210:intron 35.0%
CACAACTTATGTCACTAAGA+GGG + chr8_1:15525006-15525025 None:intergenic 35.0%
GGAAAGCTTATTATTGCTGA+TGG + chr8_1:15525121-15525140 None:intergenic 35.0%
ACCTGTAATCTAGACAACAT+TGG + chr8_1:15525193-15525212 None:intergenic 35.0%
!!! TTGGAGTTTCCCTCTTTTTT+TGG - chr8_1:15525215-15525234 Msa1181210:intron 35.0%
GGAGTTATGACCAAAAAAAG+AGG + chr8_1:15525228-15525247 None:intergenic 35.0%
! TGTTTTCATACCTAACAGTC+TGG - chr8_1:15525262-15525281 Msa1181210:intron 35.0%
CATTAAAGATCCAGACTGTT+AGG + chr8_1:15525275-15525294 None:intergenic 35.0%
TTGTAAGGCATACTGAAATC+AGG + chr8_1:15525355-15525374 None:intergenic 35.0%
! GTAATTGTGATGACGTTGTA+AGG + chr8_1:15525370-15525389 None:intergenic 35.0%
! GTGTAACATCTGATAGTGTT+TGG - chr8_1:15525533-15525552 Msa1181210:intron 35.0%
TTTGGTAGACATGTTAGAAC+AGG - chr8_1:15525551-15525570 Msa1181210:intron 35.0%
AAAAAACCATGTAGAAGGTG+AGG + chr8_1:15525665-15525684 None:intergenic 35.0%
! AGTGTGTGCGTGTAATATTT+TGG - chr8_1:15525752-15525771 Msa1181210:intron 35.0%
AGATATGGCTATATAGCTCA+TGG + chr8_1:15525888-15525907 None:intergenic 35.0%
GTTTATTCAGTATTCGACGA+AGG + chr8_1:15525976-15525995 None:intergenic 35.0%
GTCGAATACTGAATAAACTC+AGG - chr8_1:15525978-15525997 Msa1181210:CDS 35.0%
ACTAACACTACAAAGTTGGA+TGG + chr8_1:15526138-15526157 None:intergenic 35.0%
TTGGTTACACGTGTTAAATG+TGG + chr8_1:15526269-15526288 None:intergenic 35.0%
TAACACGTGTAACCAACAAA+TGG - chr8_1:15526273-15526292 Msa1181210:CDS 35.0%
AACACGTGTAACCAACAAAT+GGG - chr8_1:15526274-15526293 Msa1181210:CDS 35.0%
! CTTGTTTAGAACCCATTTGT+TGG + chr8_1:15526288-15526307 None:intergenic 35.0%
ATGATCAGCAATAGGAGCTT+CGG + chr8_1:15521185-15521204 None:intergenic 40.0%
! AAATGGATTTGGGGAAGAGA+TGG + chr8_1:15521225-15521244 None:intergenic 40.0%
! ACCAGCTGAGAAATGGATTT+GGG + chr8_1:15521235-15521254 None:intergenic 40.0%
CAGACTGATGATCACAGAAA+AGG + chr8_1:15521745-15521764 None:intergenic 40.0%
TAAACTGCATAAAGCATGGG+GGG - chr8_1:15521809-15521828 Msa1181210:CDS 40.0%
CAAAATCCTTTACTTGGCAC+CGG - chr8_1:15522146-15522165 Msa1181210:intron 40.0%
AGTCCCATTACATTAGCATC+CGG + chr8_1:15522168-15522187 None:intergenic 40.0%
! TGCTAATGTAATGGGACTTC+TGG - chr8_1:15522170-15522189 Msa1181210:intron 40.0%
! GCTAATGTAATGGGACTTCT+GGG - chr8_1:15522171-15522190 Msa1181210:intron 40.0%
! ACATGTTGATTAGTGCTGGA+TGG - chr8_1:15522322-15522341 Msa1181210:intron 40.0%
TATCTTTCACACAAGGTCGA+TGG - chr8_1:15522380-15522399 Msa1181210:intron 40.0%
GTCGATGGAACTATGAAAGA+TGG - chr8_1:15522395-15522414 Msa1181210:intron 40.0%
CGATGGAACTATGAAAGATG+GGG - chr8_1:15522397-15522416 Msa1181210:intron 40.0%
GAAGAGACCTGATAGAGAAT+GGG + chr8_1:15522530-15522549 None:intergenic 40.0%
AGAAGAGACCTGATAGAGAA+TGG + chr8_1:15522531-15522550 None:intergenic 40.0%
AATAAGAGCTAGAGGACTCT+AGG + chr8_1:15522570-15522589 None:intergenic 40.0%
GCTCTTATTCTGCTCCTAAA+TGG - chr8_1:15522581-15522600 Msa1181210:intron 40.0%
GCACAGAAAATCTTACTCCA+TGG - chr8_1:15522662-15522681 Msa1181210:intron 40.0%
GAGTAATGTCTACCTTCAAG+TGG - chr8_1:15522975-15522994 Msa1181210:intron 40.0%
AAGTATCTAATACGCCAGAC+AGG - chr8_1:15523100-15523119 Msa1181210:intron 40.0%
AGTATCTAATACGCCAGACA+GGG - chr8_1:15523101-15523120 Msa1181210:intron 40.0%
!! CATGGAAGTATCCAGTTGTT+TGG - chr8_1:15523214-15523233 Msa1181210:intron 40.0%
GGTGATACTTTGTCTTCAGA+AGG + chr8_1:15523504-15523523 None:intergenic 40.0%
! TCTGAAGACAAAGTATCACC+AGG - chr8_1:15523504-15523523 Msa1181210:intron 40.0%
AAGGTGTGCTCAAATTCTTC+TGG - chr8_1:15523594-15523613 Msa1181210:CDS 40.0%
GGTTAATCAAACCAAGAGTG+AGG + chr8_1:15523657-15523676 None:intergenic 40.0%
AGCTAAGCCTGACTTATCTT+AGG - chr8_1:15523854-15523873 Msa1181210:CDS 40.0%
AGTAAGCCCTTAAACCCATT+TGG - chr8_1:15523924-15523943 Msa1181210:CDS 40.0%
! GCCAATCCAAATGGGTTTAA+GGG + chr8_1:15523933-15523952 None:intergenic 40.0%
AGATGGATGAGTCATGAGTT+AGG - chr8_1:15524137-15524156 Msa1181210:CDS 40.0%
GGCTCCCAATTTAACGAAAT+GGG + chr8_1:15524325-15524344 None:intergenic 40.0%
AGGCTCCCAATTTAACGAAA+TGG + chr8_1:15524326-15524345 None:intergenic 40.0%
ATACTACCTTTAAACCAGCC+CGG - chr8_1:15524508-15524527 Msa1181210:CDS 40.0%
ACTTCATGGAAAGAAACCTG+TGG + chr8_1:15524594-15524613 None:intergenic 40.0%
!!! GAAACTGGGTTTTATTGTGC+TGG - chr8_1:15524779-15524798 Msa1181210:CDS 40.0%
AGGTATATACCATTGCAGCA+TGG - chr8_1:15524837-15524856 Msa1181210:intron 40.0%
CTTATGTCACTAAGAGGGAT+CGG + chr8_1:15525001-15525020 None:intergenic 40.0%
CCACAACTTATGTCACTAAG+AGG + chr8_1:15525007-15525026 None:intergenic 40.0%
CCTCTTAGTGACATAAGTTG+TGG - chr8_1:15525004-15525023 Msa1181210:intron 40.0%
TCAAATCCCTGATTAGCATC+TGG + chr8_1:15525094-15525113 None:intergenic 40.0%
GCCAATGTTGTCTAGATTAC+AGG - chr8_1:15525189-15525208 Msa1181210:intron 40.0%
ACAGTCTGGATCTTTAATGC+AGG - chr8_1:15525276-15525295 Msa1181210:intron 40.0%
CTTCTGTGTAAGAGAGAACA+GGG + chr8_1:15525309-15525328 None:intergenic 40.0%
ACTTCTGTGTAAGAGAGAAC+AGG + chr8_1:15525310-15525329 None:intergenic 40.0%
CTGAAATCAGGAGTTGTCAA+GGG + chr8_1:15525343-15525362 None:intergenic 40.0%
ACTGAAATCAGGAGTTGTCA+AGG + chr8_1:15525344-15525363 None:intergenic 40.0%
TCTTCGGAGTACATTTAGCA+AGG + chr8_1:15525422-15525441 None:intergenic 40.0%
!! GAAGGTGAGGATGTTTTTGT+GGG + chr8_1:15525652-15525671 None:intergenic 40.0%
!! AGAAGGTGAGGATGTTTTTG+TGG + chr8_1:15525653-15525672 None:intergenic 40.0%
AAACATCCTCACCTTCTACA+TGG - chr8_1:15525656-15525675 Msa1181210:intron 40.0%
!!! GTGCGTGTAATATTTTGGCT+TGG - chr8_1:15525757-15525776 Msa1181210:intron 40.0%
CTCAGCATGAGTGAAAGATA+TGG + chr8_1:15525903-15525922 None:intergenic 40.0%
! TTTAAAGTGCTATTGGTGGC+CGG - chr8_1:15526076-15526095 Msa1181210:CDS 40.0%
! CGTTGCTTGCTTGCTAACTT+TGG + chr8_1:15521005-15521024 None:intergenic 45.0%
AGTTAGCAAGCAAGCAACGA+TGG - chr8_1:15521006-15521025 Msa1181210:three_prime_UTR 45.0%
AGAACTTTGCGATCGGGTAA+GGG + chr8_1:15521142-15521161 None:intergenic 45.0%
GCGAAGGAATGATCAGCAAT+AGG + chr8_1:15521193-15521212 None:intergenic 45.0%
! CCAGCTGAGAAATGGATTTG+GGG + chr8_1:15521234-15521253 None:intergenic 45.0%
! CACCAGCTGAGAAATGGATT+TGG + chr8_1:15521236-15521255 None:intergenic 45.0%
AAGACACACCAGCTGAGAAA+TGG + chr8_1:15521242-15521261 None:intergenic 45.0%
TCTATGAGTCGAGTCTGTGT+AGG - chr8_1:15521473-15521492 Msa1181210:intron 45.0%
CACGAGATTACCTAGACTCT+CGG - chr8_1:15521499-15521518 Msa1181210:intron 45.0%
ACGAGATTACCTAGACTCTC+GGG - chr8_1:15521500-15521519 Msa1181210:intron 45.0%
GCGAGACAACTTCAACTCAA+TGG + chr8_1:15521723-15521742 None:intergenic 45.0%
AAACTGCATAAAGCATGGGG+GGG - chr8_1:15521810-15521829 Msa1181210:CDS 45.0%
GCACCGGATGCTAATGTAAT+GGG - chr8_1:15522162-15522181 Msa1181210:intron 45.0%
! TTGATTAGTGCTGGATGGAC+AGG - chr8_1:15522327-15522346 Msa1181210:intron 45.0%
TGGAACTATGAAAGATGGGG+TGG - chr8_1:15522400-15522419 Msa1181210:intron 45.0%
AAGCATCAACCTGATGTGGA+GGG + chr8_1:15522492-15522511 None:intergenic 45.0%
!! CAAGAAGCATCAACCTGATG+TGG + chr8_1:15522496-15522515 None:intergenic 45.0%
!! CACATCAGGTTGATGCTTCT+TGG - chr8_1:15522494-15522513 Msa1181210:intron 45.0%
AGGAGCAGAATAAGAGCTAG+AGG + chr8_1:15522578-15522597 None:intergenic 45.0%
CAAGGAAGGAGTTTCAACCA+TGG + chr8_1:15522682-15522701 None:intergenic 45.0%
! CAGCTTTATCTCGACAAGGA+AGG + chr8_1:15522696-15522715 None:intergenic 45.0%
CTTCCTTGTCGAGATAAAGC+TGG - chr8_1:15522694-15522713 Msa1181210:intron 45.0%
! AGTCCAGCTTTATCTCGACA+AGG + chr8_1:15522700-15522719 None:intergenic 45.0%
AGCTGGACTTTCAGCCTTAA+TGG - chr8_1:15522711-15522730 Msa1181210:intron 45.0%
! CAGCCTGATTTTCAGAAAGC+TGG - chr8_1:15522856-15522875 Msa1181210:intron 45.0%
ATTGAGCTCAAAGACCAGCT+TGG + chr8_1:15522913-15522932 None:intergenic 45.0%
AGTTCTCTATGAACCCTGTC+TGG + chr8_1:15523117-15523136 None:intergenic 45.0%
AGACAGGGTTCATAGAGAAC+TGG - chr8_1:15523116-15523135 Msa1181210:intron 45.0%
! ATAGAAAGGTGCATGTGAGG+AGG + chr8_1:15523241-15523260 None:intergenic 45.0%
! TAATGGGCAGTGGAAACGAA+AGG - chr8_1:15523274-15523293 Msa1181210:intron 45.0%
AATGGGCAGTGGAAACGAAA+GGG - chr8_1:15523275-15523294 Msa1181210:intron 45.0%
ATTGGCTGCTATGAAGTCCT+TGG + chr8_1:15523337-15523356 None:intergenic 45.0%
ATGTGCTGCAAATTGTGCCT+TGG - chr8_1:15523388-15523407 Msa1181210:intron 45.0%
ACAAAGTCTGTGACAGCTTG+AGG + chr8_1:15523462-15523481 None:intergenic 45.0%
! CAAAGTATCACCAGGAGTGA+TGG - chr8_1:15523512-15523531 Msa1181210:intron 45.0%
AGGTGAGCCTAAGATAAGTC+AGG + chr8_1:15523864-15523883 None:intergenic 45.0%
GACTTATCTTAGGCTCACCT+TGG - chr8_1:15523864-15523883 Msa1181210:CDS 45.0%
! AGTTTGAGATGGGCTTCTTC+TGG + chr8_1:15523890-15523909 None:intergenic 45.0%
GAAGAAGCCCATCTCAAACT+TGG - chr8_1:15523890-15523909 Msa1181210:CDS 45.0%
GCCCTTAAACCCATTTGGAT+TGG - chr8_1:15523929-15523948 Msa1181210:CDS 45.0%
! GGCCAATCCAAATGGGTTTA+AGG + chr8_1:15523934-15523953 None:intergenic 45.0%
!! TAAACCCATTTGGATTGGCC+TGG - chr8_1:15523934-15523953 Msa1181210:CDS 45.0%
ATTGAACCTGAGACCTTGAG+AGG + chr8_1:15523990-15524009 None:intergenic 45.0%
CCAAACAAACCCACCGAAAT+TGG + chr8_1:15524024-15524043 None:intergenic 45.0%
! CCAATTTCGGTGGGTTTGTT+TGG - chr8_1:15524021-15524040 Msa1181210:CDS 45.0%
! TGTCTTGGCTTGAGCTTCTA+TGG + chr8_1:15524438-15524457 None:intergenic 45.0%
TCTTCAATAGTCCACTCTGC+CGG + chr8_1:15524530-15524549 None:intergenic 45.0%
! GAAAGGCACAAAGCACTTCA+TGG + chr8_1:15524608-15524627 None:intergenic 45.0%
!! TGTGCTGGCTACCTGTTAAT+TGG - chr8_1:15524794-15524813 Msa1181210:CDS 45.0%
TCATCACATCCATGCTGCAA+TGG + chr8_1:15524849-15524868 None:intergenic 45.0%
ATACCCACCAGATGCTAATC+AGG - chr8_1:15525084-15525103 Msa1181210:intron 45.0%
TACCCACCAGATGCTAATCA+GGG - chr8_1:15525085-15525104 Msa1181210:intron 45.0%
ATCCCTGATTAGCATCTGGT+GGG + chr8_1:15525090-15525109 None:intergenic 45.0%
AATCCCTGATTAGCATCTGG+TGG + chr8_1:15525091-15525110 None:intergenic 45.0%
AGCTTTCCTGACTTTCATGC+TGG - chr8_1:15525133-15525152 Msa1181210:intron 45.0%
TGCAAACCAGCATGAAAGTC+AGG + chr8_1:15525142-15525161 None:intergenic 45.0%
AATGTACTCCGAAGACGAGT+TGG - chr8_1:15525427-15525446 Msa1181210:intron 45.0%
!! ATGTTTTTGTGGGTGGGTGA+GGG + chr8_1:15525642-15525661 None:intergenic 45.0%
!! GTGAGGATGTTTTTGTGGGT+GGG + chr8_1:15525648-15525667 None:intergenic 45.0%
TTGCCACACAACAGCAATTC+CGG + chr8_1:15526098-15526117 None:intergenic 45.0%
AATGCAAGTACAATGGGCAG+TGG + chr8_1:15526210-15526229 None:intergenic 45.0%
!! AAAAAAAAAACAATAAAAAA+AGG - chr8_1:15520828-15520847 Msa1181210:three_prime_UTR 5.0%
!!! TTTTTTTTTTTTTTTTGTAA+TGG - chr8_1:15525697-15525716 Msa1181210:intron 5.0%
ACAGTGACGTTCGTTCATGG+CGG - chr8_1:15520930-15520949 Msa1181210:three_prime_UTR 50.0%
TGGCGGAACTTCTGTAGCTT+TGG - chr8_1:15520947-15520966 Msa1181210:three_prime_UTR 50.0%
GAGAACTTTGCGATCGGGTA+AGG + chr8_1:15521143-15521162 None:intergenic 50.0%
ATGCGCGAGAACTTTGCGAT+CGG + chr8_1:15521149-15521168 None:intergenic 50.0%
CAGCAATAGGAGCTTCGGTT+TGG + chr8_1:15521180-15521199 None:intergenic 50.0%
CCCCAAATCCATTTCTCAGC+TGG - chr8_1:15521231-15521250 Msa1181210:intron 50.0%
GAGAAGCTAGTGCTTCTGCT+CGG + chr8_1:15521541-15521560 None:intergenic 50.0%
! TAGCATCCGGTGCCAAGTAA+AGG + chr8_1:15522155-15522174 None:intergenic 50.0%
! GGCACCGGATGCTAATGTAA+TGG - chr8_1:15522161-15522180 Msa1181210:intron 50.0%
AGCCAAAATGCAAAGCCTCC+TGG - chr8_1:15522439-15522458 Msa1181210:intron 50.0%
! CTCCAGGAGGCTTTGCATTT+TGG + chr8_1:15522444-15522463 None:intergenic 50.0%
CTTTGATGTCCCTCCACATC+AGG - chr8_1:15522480-15522499 Msa1181210:intron 50.0%
! GAAGCATCAACCTGATGTGG+AGG + chr8_1:15522493-15522512 None:intergenic 50.0%
GCTGACTGAGATGCCCATTT+AGG + chr8_1:15522598-15522617 None:intergenic 50.0%
CATCCAGAGTTCCTGCAGAT+GGG - chr8_1:15522788-15522807 Msa1181210:intron 50.0%
TAACCCATCTGCAGGAACTC+TGG + chr8_1:15522794-15522813 None:intergenic 50.0%
CCTGAATCTAACCCATCTGC+AGG + chr8_1:15522802-15522821 None:intergenic 50.0%
!! CCTGCAGATGGGTTAGATTC+AGG - chr8_1:15522799-15522818 Msa1181210:intron 50.0%
GTCTACCTTCAAGTGGAGAG+AGG - chr8_1:15522982-15523001 Msa1181210:intron 50.0%
CTAGACCTCTCTCCACTTGA+AGG + chr8_1:15522990-15523009 None:intergenic 50.0%
TGTGAGGAGGACCAAACAAC+TGG + chr8_1:15523228-15523247 None:intergenic 50.0%
! GGCATAGAAAGGTGCATGTG+AGG + chr8_1:15523244-15523263 None:intergenic 50.0%
ATGGGCAGTGGAAACGAAAG+GGG - chr8_1:15523276-15523295 Msa1181210:intron 50.0%
ACCACCAGGCCAATCCAAAT+GGG + chr8_1:15523941-15523960 None:intergenic 50.0%
! CTTGAGAGGAGCACACTTCA+AGG + chr8_1:15523976-15523995 None:intergenic 50.0%
CTTGAAGTGTGCTCCTCTCA+AGG - chr8_1:15523974-15523993 Msa1181210:CDS 50.0%
GTCTCAGGTTCAATTCTCCC+CGG - chr8_1:15523996-15524015 Msa1181210:CDS 50.0%
! ATTCTCCCCGGTGCCAATTT+CGG - chr8_1:15524008-15524027 Msa1181210:CDS 50.0%
AAACCCACCGAAATTGGCAC+CGG + chr8_1:15524018-15524037 None:intergenic 50.0%
CTTCAATAGTCCACTCTGCC+GGG + chr8_1:15524529-15524548 None:intergenic 50.0%
GAGTTTGTGTGAGCCTGACT+TGG - chr8_1:15524647-15524666 Msa1181210:CDS 50.0%
! ATGTGCCGACACGATTGTGT+CGG - chr8_1:15524687-15524706 Msa1181210:CDS 50.0%
!! TGTTTTTGTGGGTGGGTGAG+GGG + chr8_1:15525641-15525660 None:intergenic 50.0%
!! GATGTTTTTGTGGGTGGGTG+AGG + chr8_1:15525643-15525662 None:intergenic 50.0%
!! GGTGAGGATGTTTTTGTGGG+TGG + chr8_1:15525649-15525668 None:intergenic 50.0%
CTGTGGTTCTTGTGGTTGAG+TGG + chr8_1:15526020-15526039 None:intergenic 50.0%
! AAGGATGATGACGACGACTG+TGG + chr8_1:15526037-15526056 None:intergenic 50.0%
CGCACAGTGACGTTCGTTCA+TGG - chr8_1:15520927-15520946 Msa1181210:three_prime_UTR 55.0%
TGCGCGAGAACTTTGCGATC+GGG + chr8_1:15521148-15521167 None:intergenic 55.0%
! GAGATGGTGATGACGAGCGA+AGG + chr8_1:15521209-15521228 None:intergenic 55.0%
AGTGCTTCTGCTCGGCACAA+GGG + chr8_1:15521533-15521552 None:intergenic 55.0%
TAGTGCTTCTGCTCGGCACA+AGG + chr8_1:15521534-15521553 None:intergenic 55.0%
AGCCTCCTGGAGTTGAACTG+TGG - chr8_1:15522452-15522471 Msa1181210:intron 55.0%
GCCTCCTGGAGTTGAACTGT+GGG - chr8_1:15522453-15522472 Msa1181210:intron 55.0%
ACTGCCCACAGTTCAACTCC+AGG + chr8_1:15522460-15522479 None:intergenic 55.0%
TGGGCATCTCAGTCAGCCTT+AGG - chr8_1:15522601-15522620 Msa1181210:intron 55.0%
TCTGTGCAGACAGCTTCACG+CGG + chr8_1:15522649-15522668 None:intergenic 55.0%
CAGGAACTCTGGATGCTGTC+AGG + chr8_1:15522783-15522802 None:intergenic 55.0%
GCATCCAGAGTTCCTGCAGA+TGG - chr8_1:15522787-15522806 Msa1181210:intron 55.0%
! ATCACCAGGAGTGATGGAGC+TGG - chr8_1:15523518-15523537 Msa1181210:intron 55.0%
! AGATGGGCTTCTTCTGGCCA+AGG + chr8_1:15523884-15523903 None:intergenic 55.0%
!! ACCCATTTGGATTGGCCTGG+TGG - chr8_1:15523937-15523956 Msa1181210:CDS 55.0%
CACCACCAGGCCAATCCAAA+TGG + chr8_1:15523942-15523961 None:intergenic 55.0%
!! TTGGATTGGCCTGGTGGTGT+TGG - chr8_1:15523943-15523962 Msa1181210:CDS 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr8_1:15523981-15524000 Msa1181210:CDS 55.0%
AACCCACCGAAATTGGCACC+GGG + chr8_1:15524017-15524036 None:intergenic 55.0%
!! ACTCTGCCGGGCTGGTTTAA+AGG + chr8_1:15524517-15524536 None:intergenic 55.0%
TTTAAACCAGCCCGGCAGAG+TGG - chr8_1:15524516-15524535 Msa1181210:CDS 55.0%
! GACACAATCGTGTCGGCACA+TGG + chr8_1:15524688-15524707 None:intergenic 55.0%
!! CAGCACCGACACAATCGTGT+CGG + chr8_1:15524695-15524714 None:intergenic 55.0%
! ACTCCGAAGACGAGTTGGAG+AGG - chr8_1:15525432-15525451 Msa1181210:intron 55.0%
CCTCCTCTCCAACTCGTCTT+CGG + chr8_1:15525438-15525457 None:intergenic 55.0%
GACGACGACTGTGGTTCTTG+TGG + chr8_1:15526028-15526047 None:intergenic 55.0%
! TGGCCGGAATTGCTGTTGTG+TGG - chr8_1:15526092-15526111 Msa1181210:CDS 55.0%
GTCACTGTGCGAGCGAGCTT+CGG + chr8_1:15520918-15520937 None:intergenic 60.0%
! GGTGTCGAACCCGAGAGTCT+AGG + chr8_1:15521512-15521531 None:intergenic 60.0%
GCCCACAGTTCAACTCCAGG+AGG + chr8_1:15522457-15522476 None:intergenic 60.0%
AGGACCAGCTCCATCACTCC+TGG + chr8_1:15523525-15523544 None:intergenic 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr8_1:15523948-15523967 Msa1181210:CDS 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr8_1:15523949-15523968 Msa1181210:CDS 60.0%
! TCCCCGGTGCCAATTTCGGT+GGG - chr8_1:15524012-15524031 Msa1181210:CDS 60.0%
ACCCACCGAAATTGGCACCG+GGG + chr8_1:15524016-15524035 None:intergenic 60.0%
AATAGTCCACTCTGCCGGGC+TGG + chr8_1:15524525-15524544 None:intergenic 60.0%
! CGACACGATTGTGTCGGTGC+TGG - chr8_1:15524693-15524712 Msa1181210:CDS 60.0%
! CCGAAGACGAGTTGGAGAGG+AGG - chr8_1:15525435-15525454 Msa1181210:intron 60.0%
GGACCCAAGCCAACACCACC+AGG + chr8_1:15523955-15523974 None:intergenic 65.0%
! CTCCCCGGTGCCAATTTCGG+TGG - chr8_1:15524011-15524030 Msa1181210:CDS 65.0%
GGGTGGGTGAGGGGAAGTTG+CGG + chr8_1:15525632-15525651 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 15520828 15526347 15520828 ID=Msa1181210;Name=Msa1181210
chr8_1 mRNA 15520828 15526347 15520828 ID=Msa1181210-mRNA-1;Parent=Msa1181210;Name=Msa1181210-mRNA-1;_AED=0.25;_eAED=0.25;_QI=41|1|1|1|1|1|5|215|712
chr8_1 exon 15520828 15521221 15520828 ID=Msa1181210-mRNA-1:exon:5861;Parent=Msa1181210-mRNA-1
chr8_1 exon 15521697 15521877 15521697 ID=Msa1181210-mRNA-1:exon:5860;Parent=Msa1181210-mRNA-1
chr8_1 exon 15521965 15522111 15521965 ID=Msa1181210-mRNA-1:exon:5859;Parent=Msa1181210-mRNA-1
chr8_1 exon 15523579 15524826 15523579 ID=Msa1181210-mRNA-1:exon:5858;Parent=Msa1181210-mRNA-1
chr8_1 exon 15525923 15526347 15525923 ID=Msa1181210-mRNA-1:exon:5857;Parent=Msa1181210-mRNA-1
chr8_1 five_prime_UTR 15526307 15526347 15526307 ID=Msa1181210-mRNA-1:five_prime_utr;Parent=Msa1181210-mRNA-1
chr8_1 CDS 15525923 15526306 15525923 ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1 CDS 15523579 15524826 15523579 ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1 CDS 15521965 15522111 15521965 ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1 CDS 15521697 15521877 15521697 ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1 CDS 15521043 15521221 15521043 ID=Msa1181210-mRNA-1:cds;Parent=Msa1181210-mRNA-1
chr8_1 three_prime_UTR 15520828 15521042 15520828 ID=Msa1181210-mRNA-1:three_prime_utr;Parent=Msa1181210-mRNA-1
Gene Sequence

>Msa1181210

ATGTTGGCCAACATAAAGCCCAAAAATTCAACACGAGAAAGTAACTCCGAAGCTCGCTCGCACAGTGACGTTCGTTCATGGCGGAACTTCTGTAGCTTTGGTACTCTGTACACATCTCTCACAGCAATAAGTTCCAAAGTTAGCAAGCAAGCAACGATGGCTGTTGCTTCAACAACGATTCTCTCTTTTCTTCTCTTTCTTCCAATGATTCTATCATCGTCTTCGGCAAAAGTAGTAGATGAAGAATTTTCAGAGGAATTGCTACTTAAACCCTTACCCGATCGCAAAGTTCTCGCGCATTTTCATTTCCAAACCGAAGCTCCTATTGCTGATCATTCCTTCGCTCGTCATCACCATCTCTTCCCCAAATCCATTTCTCAGCTGGTTAAGAAATTTCACGTTAAAGCAATGGAATTATCTTTCACACAAGGTCGATGGAACTATGAAAGATGGGGTGGATTTGATCCAATATCAAGCCAAAATGCAAAGCCTCCTGGAGTTGAACTGTGGGCAGTCTTTGATGTCCCTCCACATCAGGTTGATGCTTCTTGGAAAAATTTAACCCATTCTCTATCAGGTCTCTTCTGTGCTTCAATAAACTTCCTAGAGTCCTCTAGCTCTTATTCTGCTCCTAAATGGGCATCTCAGTCAGCCTTAGGTAGTTTAAGATATGGCTCACTGCCGCGTGAAGCTGTCTGCACAGAAAATCTTACTCCATGGTTGAAACTCCTTCCTTGTCGAGATAAAGCTGGACTTTCAGCCTTAATGGATAGACCATCTATTTACAGGAGTTTTTATCATTCACAACGATTGCACCTGACAGCATCCAGAGTTCCTGCAGATGGGTTAGATTCAGGAATTATTCTAGAACAAACACTTACAGTTGTACTTCAGCCTGATTTTCAGAAAGCTGGTATGAGCTCTTCCGATGAAATAAAGATTCAACCAAGCTGGTCTTTGAGCTCAATATTTGGACGAAAAATCAATGGTAGGTGTGTTTTGGCTAAGTCGAGTAATGTCTACCTTCAAGTGGAGAGAGGTCTAGTCAATCAACTTGAGAATCTCCAAAAGAATACTGCTGCATATGCTGCTAATGACACAAGTATAGACGTTTTGAGAAGGAATCTTGTCTTTGAAGTATCTAATACGCCAGACAGGGTTCATAGAGAACTGGAAAAGAGCTCATCAATTATGTATGAATATTCAATCAAAGAATACAATGACACTGAACAATTTGATTTAAGCTTAACATGGAAGTATCCAGTTGTTTGGTCCTCCTCACATGCACCTTTCTATGCCAGTAGATTTTTAATGGGCAGTGGAAACGAAAGGGGTTCGATTGCAATATCCTTGAAATCTACAGAATTGACCAAGGACTTCATAGCAGCCAATAATGTTGAAGAGAAGTGTAAGTTACAAGTTAATGTGCTGCAAATTGTGCCTTGGTATATTAAGGTATATTATCATACCTTACAATTATTAGTTGATGAAAAGCCTCAAGCTGTCACAGACTTTGTTGAGAAAATGAGTGTTTCGCCTTCTGAAGACAAAGTATCACCAGGAGTGATGGAGCTGGTCCTCAGATTTCCTTGTGAGATTAAATCTGCTGTTCTAAATATAGAGTTTGATAAGGGCTTCTTACACATTGATGAATACCCACCAGATGCTAATCAGGGATTTGACATCCCATCAGCAATAATAAGCTTTCCTGACTTTCATGCTGGTTTGCAATTTTCTGATGAGTCTATAAGCAAGTCGCCAATGTTGTCTAGATTACAGGAAAAGAGCCCTGTTCTCTCTTACACAGAAGTTTTGCTTGTACCCTTGACAACTCCTGATTTCAGTATGCCTTACAACGTCATCACAATTACTTGCACAGTTTTTGCTTTGTATTTTGGATCCTTGCTAAATGTACTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGATGCAAACAAAGTTGTGTTCCTTCGTCGAATACTGAATAAACTCAGGAGAAGATCATCAGAATCCACTCAACCACAAGAACCACAGTCGTCGTCATCATCCTTCATTAGTCCAAAATTGATTTTTAAAGTGCTATTGGTGGCCGGAATTGCTGTTGTGTGGCAATACTACTTGAAATGA

Protein sequence

>Msa1181210

MLANIKPKNSTRESNSEARSHSDVRSWRNFCSFGTLYTSLTAISSKVSKQATMAVASTTILSFLLFLPMILSSSSAKVVDEEFSEELLLKPLPDRKVLAHFHFQTEAPIADHSFARHHHLFPKSISQLVKKFHVKAMELSFTQGRWNYERWGGFDPISSQNAKPPGVELWAVFDVPPHQVDASWKNLTHSLSGLFCASINFLESSSSYSAPKWASQSALGSLRYGSLPREAVCTENLTPWLKLLPCRDKAGLSALMDRPSIYRSFYHSQRLHLTASRVPADGLDSGIILEQTLTVVLQPDFQKAGMSSSDEIKIQPSWSLSSIFGRKINGRCVLAKSSNVYLQVERGLVNQLENLQKNTAAYAANDTSIDVLRRNLVFEVSNTPDRVHRELEKSSSIMYEYSIKEYNDTEQFDLSLTWKYPVVWSSSHAPFYASRFLMGSGNERGSIAISLKSTELTKDFIAANNVEEKCKLQVNVLQIVPWYIKVYYHTLQLLVDEKPQAVTDFVEKMSVSPSEDKVSPGVMELVLRFPCEIKSAVLNIEFDKGFLHIDEYPPDANQGFDIPSAIISFPDFHAGLQFSDESISKSPMLSRLQEKSPVLSYTEVLLVPLTTPDFSMPYNVITITCTVFALYFGSLLNVLRRRVGEEERLLKNKDANKVVFLRRILNKLRRRSSESTQPQEPQSSSSSFISPKLIFKVLLVAGIAVVWQYYLK*