AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1273320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1273320 MtrunA17_Chr8g0339091 91.211 512 30 4 1 511 1 498 0.0 924
Msa1273320 MtrunA17_Chr7g0234761 59.817 545 146 18 1 503 1 514 0.0 550
Msa1273320 MtrunA17_Chr5g0421111 35.667 457 205 18 106 511 140 558 2.47e-58 202
Msa1273320 MtrunA17_Chr8g0365941 41.554 296 139 11 105 393 125 393 9.69e-50 177
Msa1273320 MtrunA17_Chr3g0144641 40.909 308 145 11 228 511 104 398 6.25e-48 171
Msa1273320 MtrunA17_Chr1g0152131 45.306 245 107 9 198 440 171 390 1.02e-46 168
Msa1273320 MtrunA17_Chr4g0035101 58.442 154 56 3 254 401 88 239 1.45e-46 165
Msa1273320 MtrunA17_Chr8g0363921 61.029 136 48 2 250 385 102 232 2.11e-44 157
Msa1273320 MtrunA17_Chr5g0415291 75.258 97 22 1 281 377 91 185 7.16e-44 155
Msa1273320 MtrunA17_Chr3g0131771 76.531 98 20 1 296 390 139 236 1.33e-41 152
Msa1273320 MtrunA17_Chr8g0385911 76.344 93 19 1 301 390 142 234 4.28e-40 147
Msa1273320 MtrunA17_Chr7g0258161 69.318 88 27 0 301 388 170 257 3.38e-37 140
Msa1273320 MtrunA17_Chr1g0174161 55.932 118 46 2 301 418 157 268 1.01e-36 138
Msa1273320 MtrunA17_Chr6g0484271 62.136 103 39 0 282 384 133 235 2.40e-35 133
Msa1273320 MtrunA17_Chr4g0074161 56.522 92 36 2 278 369 183 270 2.09e-22 99.4
Msa1273320 MtrunA17_Chr1g0190731 62.500 80 29 1 290 369 179 257 6.28e-22 97.4
Msa1273320 MtrunA17_Chr4g0032951 58.462 65 27 0 304 368 355 419 2.41e-15 78.2
Msa1273320 MtrunA17_Chr1g0184841 60.000 75 29 1 295 369 111 184 4.74e-15 75.5
Msa1273320 MtrunA17_Chr2g0329041 53.846 65 30 0 302 366 330 394 5.84e-15 77.0
Msa1273320 MtrunA17_Chr4g0014771 55.385 65 29 0 304 368 118 182 5.87e-15 73.6
Msa1273320 MtrunA17_Chr1g0182791 52.174 69 32 1 306 374 319 386 1.34e-14 76.3
Msa1273320 MtrunA17_Chr7g0258181 45.946 74 40 0 304 377 243 316 4.16e-14 73.6
Msa1273320 MtrunA17_Chr1g0174271 52.239 67 32 0 304 370 298 364 4.33e-14 73.9
Msa1273320 MtrunA17_Chr1g0193321 51.562 64 30 1 306 369 464 526 4.47e-14 75.1
Msa1273320 MtrunA17_Chr3g0087771 50.769 65 32 0 304 368 322 386 5.61e-13 70.9
Msa1273320 MtrunA17_Chr5g0393721 40.625 96 47 2 305 391 225 319 1.71e-12 68.6
Msa1273320 MtrunA17_Chr1g0152651 52.308 65 30 1 304 368 274 337 2.23e-12 68.6
Msa1273320 MtrunA17_Chr8g0351881 47.692 65 34 0 304 368 316 380 2.64e-12 68.6
Msa1273320 MtrunA17_Chr1g0153241 47.692 65 33 1 306 370 87 150 4.14e-12 66.6
Msa1273320 MtrunA17_Chr7g0262691 35.200 125 65 4 257 378 215 326 4.95e-12 68.2
Msa1273320 MtrunA17_Chr3g0134741 53.125 64 29 1 305 368 230 292 1.68e-11 65.5
Msa1273320 MtrunA17_Chr3g0095391 50.000 64 31 1 306 369 311 373 1.91e-11 66.2
Msa1273320 MtrunA17_Chr1g0213791 47.059 68 36 0 304 371 265 332 9.26e-11 63.5
Msa1273320 MtrunA17_Chr7g0270871 31.068 103 69 2 267 369 166 266 9.82e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1273320 AT3G07340.1 41.762 522 179 18 1 485 1 434 2.75e-101 312
Msa1273320 AT3G07340.2 41.061 509 174 18 1 472 1 420 5.49e-92 288
Msa1273320 AT5G48560.1 39.895 569 213 22 1 511 1 498 4.93e-89 282
Msa1273320 AT5G48560.2 40.153 523 198 20 1 465 1 466 5.84e-81 260
Msa1273320 AT3G23690.1 45.556 270 105 10 221 484 113 346 4.32e-56 192
Msa1273320 AT1G68920.3 41.994 331 123 13 84 393 108 390 5.98e-53 186
Msa1273320 AT1G68920.1 41.692 331 125 12 84 393 108 391 8.23e-53 186
Msa1273320 AT1G68920.4 41.692 331 125 12 84 393 108 391 8.23e-53 186
Msa1273320 AT1G68920.2 41.692 331 125 12 84 393 108 391 8.23e-53 186
Msa1273320 AT1G26260.4 37.297 370 160 15 35 395 7 313 2.44e-48 172
Msa1273320 AT1G26260.1 37.297 370 160 15 35 395 7 313 2.44e-48 172
Msa1273320 AT1G26260.6 37.297 370 160 15 35 395 7 313 2.44e-48 172
Msa1273320 AT1G26260.2 37.297 370 160 15 35 395 7 313 2.44e-48 172
Msa1273320 AT1G59640.1 85.227 88 13 0 296 383 128 215 1.26e-46 163
Msa1273320 AT1G59640.2 66.667 123 38 1 261 383 96 215 1.70e-45 163
Msa1273320 AT1G26260.5 42.049 283 112 11 114 395 60 291 1.74e-45 164
Msa1273320 AT1G10120.2 56.338 142 52 3 264 396 157 297 6.73e-45 162
Msa1273320 AT1G10120.1 56.338 142 52 3 264 396 157 297 6.73e-45 162
Msa1273320 AT1G26260.3 54.491 167 70 4 230 395 101 262 1.42e-44 160
Msa1273320 AT5G50915.3 73.267 101 25 1 275 375 109 207 6.17e-43 154
Msa1273320 AT5G50915.4 73.267 101 25 1 275 375 109 207 6.17e-43 154
Msa1273320 AT2G18300.1 58.571 140 52 3 254 392 139 273 7.01e-43 155
Msa1273320 AT5G50915.1 74.000 100 24 1 275 374 109 206 1.23e-42 153
Msa1273320 AT5G50915.2 74.000 100 24 1 275 374 109 206 1.23e-42 153
Msa1273320 AT2G18300.2 58.451 142 51 4 254 394 139 273 3.25e-42 154
Msa1273320 AT2G18300.3 55.921 152 59 4 244 394 129 273 7.83e-42 154
Msa1273320 AT4G34530.1 78.409 88 19 0 298 385 166 253 1.27e-41 152
Msa1273320 AT5G62610.2 76.087 92 17 1 285 376 139 225 1.69e-41 150
Msa1273320 AT5G62610.1 76.087 92 17 1 285 376 139 225 1.69e-41 150
Msa1273320 AT4G36540.2 54.305 151 48 3 245 392 97 229 2.76e-40 147
Msa1273320 AT4G36540.1 56.250 144 42 3 245 385 97 222 7.28e-40 146
Msa1273320 AT2G42300.1 61.682 107 36 1 301 407 182 283 5.23e-38 142
Msa1273320 AT3G57800.2 64.078 103 32 1 301 403 201 298 5.24e-38 143
Msa1273320 AT2G42300.4 68.539 89 28 0 301 389 182 270 6.27e-38 140
Msa1273320 AT1G25330.1 63.636 110 34 3 288 396 91 195 4.26e-36 134
Msa1273320 AT1G18400.2 69.767 86 26 0 302 387 143 228 6.34e-34 129
Msa1273320 AT1G73830.1 70.588 85 25 0 303 387 146 230 7.27e-34 129
Msa1273320 AT1G73830.2 70.588 85 25 0 303 387 146 230 7.53e-34 129
Msa1273320 AT1G18400.1 69.767 86 26 0 302 387 143 228 9.79e-34 129
Msa1273320 AT3G57800.1 40.116 172 51 2 301 425 201 367 1.75e-29 120
Msa1273320 AT2G24260.2 65.753 73 24 1 297 369 28 99 5.30e-23 98.6
Msa1273320 AT2G24260.1 65.753 73 24 1 297 369 131 202 4.04e-22 98.2
Msa1273320 AT4G30980.1 72.727 66 17 1 304 369 130 194 5.09e-22 97.1
Msa1273320 AT4G30980.2 72.727 66 17 1 304 369 178 242 7.60e-22 97.4
Msa1273320 AT5G58010.1 71.642 67 18 1 303 369 98 163 1.27e-21 95.5
Msa1273320 AT2G42300.5 83.721 43 7 0 301 343 182 224 2.03e-18 84.7
Msa1273320 AT2G42300.3 83.721 43 7 0 301 343 182 224 2.03e-18 84.7
Msa1273320 AT2G42300.2 83.721 43 7 0 301 343 182 224 2.33e-18 84.7
Msa1273320 AT2G20180.4 34.426 183 89 6 203 369 175 342 9.01e-16 80.1
Msa1273320 AT2G20180.6 34.426 183 89 6 203 369 175 342 9.01e-16 80.1
Msa1273320 AT2G20180.2 34.426 183 89 6 203 369 175 342 9.01e-16 80.1
Msa1273320 AT2G20180.3 34.426 183 89 6 203 369 175 342 9.01e-16 80.1
Msa1273320 AT2G20180.7 34.426 183 89 6 203 369 104 271 1.19e-15 79.3
Msa1273320 AT2G20180.1 34.426 183 89 6 203 369 104 271 1.19e-15 79.3
Msa1273320 AT2G20180.5 34.426 183 89 6 203 369 104 271 1.19e-15 79.3
Msa1273320 AT4G02590.3 52.874 87 40 1 283 369 62 147 5.90e-15 75.1
Msa1273320 AT4G02590.2 52.874 87 40 1 283 369 125 210 9.60e-15 75.5
Msa1273320 AT4G02590.1 52.874 87 40 1 283 369 125 210 9.60e-15 75.5
Msa1273320 AT4G09180.1 52.239 67 32 0 302 368 182 248 2.10e-14 73.9
Msa1273320 AT2G20180.8 33.889 180 88 6 203 366 175 339 2.91e-14 74.7
Msa1273320 AT1G09530.3 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT1G09530.2 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT1G09530.5 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT1G09530.1 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT1G09530.4 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT1G09530.6 38.614 101 46 2 269 369 317 401 3.24e-14 75.5
Msa1273320 AT2G42280.1 53.125 64 30 0 304 367 279 342 3.62e-14 74.3
Msa1273320 AT1G51140.1 56.250 64 28 0 304 367 304 367 5.03e-14 74.3
Msa1273320 AT1G03040.1 50.476 105 41 4 287 381 124 227 5.53e-14 73.2
Msa1273320 AT1G03040.2 44.531 128 57 6 264 381 99 222 7.10e-14 72.8
Msa1273320 AT2G42280.3 54.545 66 28 1 304 367 279 344 7.41e-14 73.6
Msa1273320 AT1G35460.1 50.746 67 33 0 302 368 179 245 8.84e-14 72.0
Msa1273320 AT1G03040.3 56.977 86 33 3 287 369 124 208 1.16e-13 72.8
Msa1273320 AT4G28815.2 56.897 58 24 1 307 364 71 127 1.86e-13 70.5
Msa1273320 AT4G28815.1 56.897 58 24 1 307 364 147 203 7.13e-13 70.1
Msa1273320 AT2G46970.1 32.090 134 69 4 241 369 171 287 1.29e-12 70.1
Msa1273320 AT2G46970.2 32.090 134 69 4 241 369 140 256 1.43e-12 69.7
Msa1273320 AT4G28800.1 53.226 62 28 1 307 368 252 312 1.57e-12 70.1
Msa1273320 AT2G46970.3 32.090 134 69 4 241 369 149 265 1.70e-12 69.7
Msa1273320 AT4G33880.1 29.412 221 122 5 160 368 131 329 1.81e-12 69.3
Msa1273320 AT4G28800.2 48.611 72 35 2 307 377 264 334 4.83e-12 68.6
Msa1273320 AT4G28790.1 50.000 64 31 1 306 369 273 335 5.88e-12 68.2
Msa1273320 AT1G27740.1 44.186 86 47 1 283 368 146 230 2.48e-11 64.7
Msa1273320 AT4G00050.2 50.769 65 31 1 304 368 105 168 3.38e-11 64.7
Msa1273320 AT2G14760.1 50.769 65 31 1 304 368 237 300 3.62e-11 65.1
Msa1273320 AT2G43140.1 48.485 66 34 0 302 367 132 197 5.20e-11 62.8
Msa1273320 AT4G00050.1 50.769 65 31 1 304 368 207 270 7.42e-11 64.7
Msa1273320 AT4G28790.2 45.455 66 35 1 306 371 273 337 7.72e-11 63.9
Msa1273320 AT4G00050.3 50.769 65 31 1 304 368 207 270 8.26e-11 64.3

Find 126 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGAATTAATAGGAAAAT+TGG 0.171114 8_3:+7046135 Msa1273320:CDS
TATTTCAGTTTCTATTCTTC+TGG 0.187268 8_3:+7049244 Msa1273320:three_prime_UTR
TCCGTTGACTTGTCCCAATT+TGG 0.196239 8_3:-7046007 None:intergenic
TGCATTTGTAGTACCTTCTT+TGG 0.230696 8_3:-7047077 None:intergenic
CTTTAGTGCTTTACCTTTGT+TGG 0.234392 8_3:-7046658 None:intergenic
ATGCATTTACCTTTCCTAAA+TGG 0.234846 8_3:+7048393 Msa1273320:CDS
CACCTTCATTAAATCCATTT+AGG 0.237160 8_3:-7048407 None:intergenic
AATTATTCCTTGTAGGTTAC+TGG 0.240542 8_3:+7047869 Msa1273320:intron
TCTCATACTTTAATGGAAAA+TGG 0.244355 8_3:+7046382 Msa1273320:CDS
AATTCACCAAATGGAGAAAT+TGG 0.246825 8_3:+7046556 Msa1273320:CDS
CTCTTCCTTGAATTCATATC+AGG 0.254742 8_3:-7046592 None:intergenic
ATAGGAAAATTGGGAACTTT+TGG 0.260528 8_3:+7046145 Msa1273320:CDS
TCTTTGTGCCATAATAATAT+TGG 0.268551 8_3:+7048369 Msa1273320:CDS
TAATTAAGCCATTATTAATT+AGG 0.269458 8_3:+7049148 Msa1273320:three_prime_UTR
CTGGGGTTGTTGCCCATAAA+AGG 0.272608 8_3:-7048274 None:intergenic
CAGTGGGTCCCATTTGTATT+AGG 0.280658 8_3:-7048324 None:intergenic
TCAAAGATCTCATACTTTAA+TGG 0.282745 8_3:+7046375 Msa1273320:CDS
TTGAATAATTTGTAAAATAG+AGG 0.288236 8_3:-7049280 None:intergenic
GATCCTCTGGGCTTCAATTC+AGG 0.289630 8_3:-7049070 None:intergenic
TGCAAATTATTAGTGTTATA+TGG 0.294745 8_3:+7049337 Msa1273320:three_prime_UTR
ACCGTTGTTCAGATGGGATT+TGG 0.307096 8_3:+7048818 Msa1273320:CDS
TATATAATTCATGGGGTTGT+TGG 0.309768 8_3:-7049127 None:intergenic
AATGCATGCCAATATTATTA+TGG 0.315999 8_3:-7048377 None:intergenic
TTGAACATGTTGTTGGGATT+TGG 0.322517 8_3:-7046097 None:intergenic
TAGAAACTGAAATAATATAA+AGG 0.323464 8_3:-7049235 None:intergenic
CTTAAATGCAAAGAAAATTA+AGG 0.336175 8_3:+7047003 Msa1273320:CDS
TGAACAGACCTAATTAATAA+TGG 0.340834 8_3:-7049156 None:intergenic
TGTGGCAAAGAGAGACTAAT+TGG 0.341743 8_3:-7045728 None:intergenic
TGCAACCTGGTACAAGATCT+TGG 0.360756 8_3:-7047730 None:intergenic
CTGAATCAAAGTTAAGGTTT+TGG 0.361916 8_3:-7046030 None:intergenic
TGGCTTAATTATATAATTCA+TGG 0.364005 8_3:-7049136 None:intergenic
TTGGCACCAATTTCTCCATT+TGG 0.364119 8_3:-7046562 None:intergenic
CCTTGAAACTAGAAGCAAAA+TGG 0.365564 8_3:-7045806 None:intergenic
CCGTTGACTTGTCCCAATTT+GGG 0.371481 8_3:-7046006 None:intergenic
ATTTCAGTTTCTATTCTTCT+GGG 0.376480 8_3:+7049245 Msa1273320:three_prime_UTR
ACAACATTCTTCTAACCCTT+TGG 0.378957 8_3:+7046177 Msa1273320:CDS
TTGATAAAATGGTTCATCAT+TGG 0.379781 8_3:-7046205 None:intergenic
AATAACATTCCTAATACAAA+TGG 0.381646 8_3:+7048315 Msa1273320:CDS
GTGCTTTACCTTTGTTGGAT+TGG 0.388636 8_3:-7046653 None:intergenic
AGAGAATTAATAGGAAAATT+GGG 0.391350 8_3:+7046136 Msa1273320:CDS
CAACATTGTTCATCACCATT+TGG 0.395399 8_3:-7046345 None:intergenic
GTGTATTCCTGTTTGAAGTT+TGG 0.400671 8_3:-7048841 None:intergenic
TTTGTTGGATTGGAAGAGTT+TGG 0.402500 8_3:-7046643 None:intergenic
AGTCCATCACTCAAAACATT+TGG 0.406046 8_3:+7046430 Msa1273320:CDS
GAATTGAAGCCCAGAGGATC+AGG 0.415764 8_3:+7049073 Msa1273320:three_prime_UTR
CTTCACCTGATATGAATTCA+AGG 0.417266 8_3:+7046587 Msa1273320:CDS
ATTCATATCAGGTGAAGCTT+TGG 0.422324 8_3:-7046581 None:intergenic
AGAAACTGAAATAATATAAA+GGG 0.422594 8_3:-7049234 None:intergenic
TCTTGTACCAGGTTGCAATA+AGG 0.423191 8_3:+7047736 Msa1273320:CDS
GCAGAATTCTCACCTGATCC+TGG 0.425692 8_3:+7046259 Msa1273320:CDS
ATGGTACTGAGGAATCTAAT+TGG 0.426318 8_3:-7048251 None:intergenic
TCATCCTCAGAGAATGCTAA+TGG 0.426501 8_3:-7048788 None:intergenic
TTCCTAAATGGATTTAATGA+AGG 0.429712 8_3:+7048405 Msa1273320:CDS
AGTATTGATTCTGTATTGTA+TGG 0.432380 8_3:+7049314 Msa1273320:three_prime_UTR
GGCTTAATTATATAATTCAT+GGG 0.445635 8_3:-7049135 None:intergenic
GTGGGTGAGAGAAATGAAAA+TGG 0.455045 8_3:+7047031 Msa1273320:CDS
TTTGTGATGAGAGAATTAAT+AGG 0.459641 8_3:+7046127 Msa1273320:CDS
GAATGTTATTATGAATAGCT+TGG 0.462285 8_3:-7048302 None:intergenic
TCTGAGCAAAATTCACCAAA+TGG 0.472106 8_3:+7046547 Msa1273320:CDS
TTGAGAGGAAAGACTCTTTG+AGG 0.474296 8_3:-7045668 None:intergenic
TGAATAATTTGTAAAATAGA+GGG 0.475485 8_3:-7049279 None:intergenic
CTTCTCCAAGATCTTGTACC+AGG 0.477721 8_3:+7047725 Msa1273320:CDS
AAACAATCTTGGGTTTGGTA+AGG 0.480731 8_3:-7045977 None:intergenic
CTTAAACACCGTTGTTCAGA+TGG 0.480880 8_3:+7048811 Msa1273320:CDS
CTTTAGGGTGTAGAAGGTAG+TGG 0.481240 8_3:+7046974 Msa1273320:intron
ACAAAATGAACTTACGTTTG+AGG 0.482939 8_3:-7045872 None:intergenic
GGTGGTGATGATGTAGCTGC+TGG 0.485718 8_3:-7046076 None:intergenic
ATTTAATGAAGGTGGCTCTC+AGG 0.488784 8_3:+7048416 Msa1273320:CDS
CTAAATGGATTTAATGAAGG+TGG 0.490065 8_3:+7048408 Msa1273320:CDS
AAAGAAAATTAAGGTAAATG+TGG 0.490367 8_3:+7047012 Msa1273320:CDS
CCACTGCTCAGTGGAACCAT+TGG 0.495527 8_3:+7048341 Msa1273320:CDS
TTGATTGTAAATAGGTAAGG+AGG 0.496945 8_3:+7047678 Msa1273320:intron
GATTTGGCCAAACTTCAAAC+AGG 0.499864 8_3:+7048834 Msa1273320:CDS
TTGAAACTTGGGGAGTGTAT+TGG 0.502535 8_3:-7048863 None:intergenic
TAAGTGCTGAATCAAAGTTA+AGG 0.502693 8_3:-7046036 None:intergenic
GCAACAAGAAAATGATAGAA+TGG 0.507282 8_3:+7046492 Msa1273320:CDS
AACATGTTGTTGGGATTTGG+TGG 0.508722 8_3:-7046094 None:intergenic
AAAGAAGGTACTACAAATGC+AGG 0.510359 8_3:+7047079 Msa1273320:CDS
CTTTGAACAAAACCAGGATC+AGG 0.511674 8_3:-7046271 None:intergenic
GTCTTCAGTGAATACAAAGA+TGG 0.514690 8_3:+7048059 Msa1273320:CDS
AAGAAAATTAAGGTAAATGT+GGG 0.516886 8_3:+7047013 Msa1273320:CDS
GTCATTGCAGCGTCAAGTTG+AGG 0.516912 8_3:+7047931 Msa1273320:CDS
AGAAAATGATAGAATGGAAG+TGG 0.520012 8_3:+7046498 Msa1273320:CDS
ATAACATTCCTAATACAAAT+GGG 0.521184 8_3:+7048316 Msa1273320:CDS
TTCATCATTGGTACAACCAA+AGG 0.522984 8_3:-7046193 None:intergenic
AGCAAGAGTTTCAATGAAAG+AGG 0.528039 8_3:+7046319 Msa1273320:CDS
TTAATTTAGCAATGATACAT+TGG 0.529261 8_3:-7049362 None:intergenic
AAGAGAATTCAAAGAAGTAG+TGG 0.535245 8_3:-7045754 None:intergenic
AGAAAAGCTTCTTCTTCCAA+AGG 0.537859 8_3:+7046613 Msa1273320:CDS
GATTGAAATTGAGACTTGAG+AGG 0.542784 8_3:-7045683 None:intergenic
TCATCATTGGTACAACCAAA+GGG 0.546397 8_3:-7046192 None:intergenic
AATTCTGCCACATTAGACAT+TGG 0.552784 8_3:-7046244 None:intergenic
GTGGTGATGATGTAGCTGCT+GGG 0.558812 8_3:-7046075 None:intergenic
TGATTGTAAATAGGTAAGGA+GGG 0.560247 8_3:+7047679 Msa1273320:intron
CCCAAATTGGGACAAGTCAA+CGG 0.562105 8_3:+7046006 Msa1273320:CDS
GCAGCCCTTTGAACAAAACC+AGG 0.562440 8_3:-7046277 None:intergenic
CAATGAAAGAGGTAACCAAA+TGG 0.563493 8_3:+7046330 Msa1273320:CDS
CAATGGTTCCACTGAGCAGT+GGG 0.570871 8_3:-7048340 None:intergenic
TTCAATTCAGGCGTAATGAA+AGG 0.571791 8_3:-7049058 None:intergenic
TCATTAAATCCATTTAGGAA+AGG 0.572147 8_3:-7048402 None:intergenic
TTGCTTACCTTATTGCAACC+TGG 0.573680 8_3:-7047743 None:intergenic
GAATAATTTGTAAAATAGAG+GGG 0.573792 8_3:-7049278 None:intergenic
GGAGGGAGAAAATAAGTGAG+AGG 0.578293 8_3:+7047696 Msa1273320:CDS
AATAATTTGTAAAATAGAGG+GGG 0.579044 8_3:-7049277 None:intergenic
TTAAACACCGTTGTTCAGAT+GGG 0.588839 8_3:+7048812 Msa1273320:CDS
TTTATTACCGTTGAAACTTG+GGG 0.589614 8_3:-7048873 None:intergenic
AAATGGTATCAAGAATTTCG+AGG 0.595579 8_3:+7047048 Msa1273320:CDS
TTCATGTCAGAGCAAGAAGA+GGG 0.597011 8_3:+7047158 Msa1273320:CDS
TTCGAGGAAGAGACCAAAGA+AGG 0.607666 8_3:+7047064 Msa1273320:CDS
CCAATGGTTCCACTGAGCAG+TGG 0.608364 8_3:-7048341 None:intergenic
AAGAAGGTACTACAAATGCA+GGG 0.609004 8_3:+7047080 Msa1273320:CDS
GGAAGTGGCTAATTCTCAAG+AGG 0.609764 8_3:+7046513 Msa1273320:CDS
GCTTAATTATATAATTCATG+GGG 0.624346 8_3:-7049134 None:intergenic
ATACACTCCCCAAGTTTCAA+CGG 0.637097 8_3:+7048866 Msa1273320:CDS
TGGTGATGATGTAGCTGCTG+GGG 0.642200 8_3:-7046074 None:intergenic
ATTCATGTCAGAGCAAGAAG+AGG 0.647778 8_3:+7047157 Msa1273320:CDS
GGTTGTTGCCCATAAAAGGA+TGG 0.650244 8_3:-7048270 None:intergenic
CCCATAAAAGGATGGTACTG+AGG 0.650891 8_3:-7048262 None:intergenic
TGGCACAAAGAAGAATCCAA+TGG 0.654165 8_3:-7048357 None:intergenic
GCCAAATCCCATCTGAACAA+CGG 0.655409 8_3:-7048819 None:intergenic
TCAAAGAAGTAGTGGCAATG+TGG 0.656678 8_3:-7045746 None:intergenic
AAATGGGACCCACTGCTCAG+TGG 0.663010 8_3:+7048332 Msa1273320:CDS
AAACTCTTCCAATCCAACAA+AGG 0.664009 8_3:+7046645 Msa1273320:CDS
AGAAGGTACTACAAATGCAG+GGG 0.673942 8_3:+7047081 Msa1273320:CDS
GTATCCATTAGCATTCTCTG+AGG 0.725003 8_3:+7048784 Msa1273320:intron
ACGCCTGAATTGAAGCCCAG+AGG 0.732491 8_3:+7049067 Msa1273320:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAATTAGATCAA+AGG - chr8_3:7045914-7045933 None:intergenic 10.0%
!!! AAATTTGTTTAAATTTTTGT+CGG - chr8_3:7046757-7046776 None:intergenic 10.0%
!!! CAATTTTTTTTTTTTAATGT+TGG + chr8_3:7046920-7046939 Msa1273320:intron 10.0%
!! AAAATTGATAGAAAAATAAA+AGG - chr8_3:7047230-7047249 None:intergenic 10.0%
!! TAACTATAATTTATAGAAAA+AGG - chr8_3:7048458-7048477 None:intergenic 10.0%
!!! AAATAAGTTTTGATTAATTA+AGG - chr8_3:7048983-7049002 None:intergenic 10.0%
!!! AATTAATCAAAACTTATTTT+TGG + chr8_3:7048984-7049003 Msa1273320:intron 10.0%
!!! ATTTTTTTTTTAGTCCATTA+TGG + chr8_3:7045922-7045941 Msa1273320:exon 15.0%
!!! ACAATTTTATGTAATATCAA+AGG - chr8_3:7047308-7047327 None:intergenic 15.0%
!! ATGTAAAAAAATGAATTTGA+AGG + chr8_3:7047463-7047482 Msa1273320:intron 15.0%
!! AATTAGAATACAAAACAAAT+TGG + chr8_3:7047784-7047803 Msa1273320:intron 15.0%
!! AGGAATAATTAATAATTCAT+AGG - chr8_3:7047859-7047878 None:intergenic 15.0%
!! AATTATTAATTATTCCTTGT+AGG + chr8_3:7047862-7047881 Msa1273320:intron 15.0%
!!! AAATTTTTGTCTTAATTATC+TGG - chr8_3:7048629-7048648 None:intergenic 15.0%
!! GATAATTAAGACAAAAATTT+AGG + chr8_3:7048629-7048648 Msa1273320:intron 15.0%
!! TTTGAAAAATAGAGTTAATT+AGG - chr8_3:7048755-7048774 None:intergenic 15.0%
!!! ATTAAAATGTCATTTTCATT+TGG + chr8_3:7048943-7048962 Msa1273320:intron 15.0%
!! TAATTAAGCCATTATTAATT+AGG + chr8_3:7049148-7049167 Msa1273320:three_prime_UTR 15.0%
!! AGAAACTGAAATAATATAAA+GGG - chr8_3:7049237-7049256 None:intergenic 15.0%
!! TAGAAACTGAAATAATATAA+AGG - chr8_3:7049238-7049257 None:intergenic 15.0%
!!! TGAATAATTTGTAAAATAGA+GGG - chr8_3:7049282-7049301 None:intergenic 15.0%
!!! TTGAATAATTTGTAAAATAG+AGG - chr8_3:7049283-7049302 None:intergenic 15.0%
!! AGAGAATTAATAGGAAAATT+GGG + chr8_3:7046136-7046155 Msa1273320:CDS 20.0%
!!! GCATATTTTCTTTGATAAAA+TGG - chr8_3:7046219-7046238 None:intergenic 20.0%
!!! ATGTTTCTTTTTTGACTTTA+GGG + chr8_3:7046959-7046978 Msa1273320:intron 20.0%
!! CTTAAATGCAAAGAAAATTA+AGG + chr8_3:7047003-7047022 Msa1273320:CDS 20.0%
!! AAAGAAAATTAAGGTAAATG+TGG + chr8_3:7047012-7047031 Msa1273320:CDS 20.0%
!! AAGAAAATTAAGGTAAATGT+GGG + chr8_3:7047013-7047032 Msa1273320:CDS 20.0%
!!! TTTTTGTTTTGTTGAGAAAT+TGG + chr8_3:7047271-7047290 Msa1273320:intron 20.0%
!! TATGAACTTTGATTGTAAAT+AGG + chr8_3:7047670-7047689 Msa1273320:intron 20.0%
!!! TTTGTACTTTTTCACTAATT+TGG + chr8_3:7047828-7047847 Msa1273320:intron 20.0%
!! TATAGAATTAAGATGCTTAT+TGG - chr8_3:7047971-7047990 None:intergenic 20.0%
!!! AAATATCTGAAATCACAAAA+TGG - chr8_3:7048199-7048218 None:intergenic 20.0%
!! AATAACATTCCTAATACAAA+TGG + chr8_3:7048315-7048334 Msa1273320:CDS 20.0%
!! ATAACATTCCTAATACAAAT+GGG + chr8_3:7048316-7048335 Msa1273320:CDS 20.0%
!! ATTAATTAAGGTCAAATTTC+TGG - chr8_3:7048971-7048990 None:intergenic 20.0%
!! GCTTAATTATATAATTCATG+GGG - chr8_3:7049137-7049156 None:intergenic 20.0%
!! GGCTTAATTATATAATTCAT+GGG - chr8_3:7049138-7049157 None:intergenic 20.0%
!! TGGCTTAATTATATAATTCA+TGG - chr8_3:7049139-7049158 None:intergenic 20.0%
!! CTAACTTAAAAAACTAACAA+AGG - chr8_3:7049192-7049211 None:intergenic 20.0%
!!! AATAATTTGTAAAATAGAGG+GGG - chr8_3:7049280-7049299 None:intergenic 20.0%
!!! GAATAATTTGTAAAATAGAG+GGG - chr8_3:7049281-7049300 None:intergenic 20.0%
!! TGCAAATTATTAGTGTTATA+TGG + chr8_3:7049337-7049356 Msa1273320:three_prime_UTR 20.0%
!! TTAATTTAGCAATGATACAT+TGG - chr8_3:7049365-7049384 None:intergenic 20.0%
!!! ATTGGAGATTTTGATGAATT+GGG - chr8_3:7045713-7045732 None:intergenic 25.0%
!!! AATTGGAGATTTTGATGAAT+TGG - chr8_3:7045714-7045733 None:intergenic 25.0%
!!! GTTTTTTTTTGCTTTTGGTT+TGG - chr8_3:7045850-7045869 None:intergenic 25.0%
!!! AGGTAGTTTTTTTTTGCTTT+TGG - chr8_3:7045855-7045874 None:intergenic 25.0%
!!! AAAGAATTGGTTTTCCATAA+TGG - chr8_3:7045939-7045958 None:intergenic 25.0%
!! AACCAATTCTTTTTAAATGC+TGG + chr8_3:7045947-7045966 Msa1273320:CDS 25.0%
! ATCCAGCATTTAAAAAGAAT+TGG - chr8_3:7045952-7045971 None:intergenic 25.0%
!!! ATTGTTTTTTCAACCCAAAT+TGG + chr8_3:7045993-7046012 Msa1273320:CDS 25.0%
!!! TTGTTTTTTCAACCCAAATT+GGG + chr8_3:7045994-7046013 Msa1273320:CDS 25.0%
!! TTTTCATTGAACATGTTGTT+GGG - chr8_3:7046106-7046125 None:intergenic 25.0%
!! ATTTTCATTGAACATGTTGT+TGG - chr8_3:7046107-7046126 None:intergenic 25.0%
! TTTGTGATGAGAGAATTAAT+AGG + chr8_3:7046127-7046146 Msa1273320:CDS 25.0%
! GAGAGAATTAATAGGAAAAT+TGG + chr8_3:7046135-7046154 Msa1273320:CDS 25.0%
! TTGATAAAATGGTTCATCAT+TGG - chr8_3:7046208-7046227 None:intergenic 25.0%
! TCAAAGATCTCATACTTTAA+TGG + chr8_3:7046375-7046394 Msa1273320:CDS 25.0%
! TCTCATACTTTAATGGAAAA+TGG + chr8_3:7046382-7046401 Msa1273320:CDS 25.0%
! ATTTAGTCCATACTGTTTAA+AGG - chr8_3:7046789-7046808 None:intergenic 25.0%
!!! TTGAGTGTTACAATTTTTTC+CGG + chr8_3:7046862-7046881 Msa1273320:intron 25.0%
!!! CATGTTTCTTTTTTGACTTT+AGG + chr8_3:7046958-7046977 Msa1273320:intron 25.0%
!! ACATGAATGTAATCTTTTTG+AGG - chr8_3:7047145-7047164 None:intergenic 25.0%
! TTAAGATTTGCAACTACTAT+TGG - chr8_3:7047610-7047629 None:intergenic 25.0%
! ACTTTGATTGTAAATAGGTA+AGG + chr8_3:7047675-7047694 Msa1273320:intron 25.0%
!! TTTTCTTGCTCATTAAGTTA+TGG + chr8_3:7048006-7048025 Msa1273320:intron 25.0%
! GAATGTTATTATGAATAGCT+TGG - chr8_3:7048305-7048324 None:intergenic 25.0%
! TCTTTGTGCCATAATAATAT+TGG + chr8_3:7048369-7048388 Msa1273320:CDS 25.0%
! AATGCATGCCAATATTATTA+TGG - chr8_3:7048380-7048399 None:intergenic 25.0%
! TCATTAAATCCATTTAGGAA+AGG - chr8_3:7048405-7048424 None:intergenic 25.0%
!! TTCCTAAATGGATTTAATGA+AGG + chr8_3:7048405-7048424 Msa1273320:CDS 25.0%
! CTTCATATATTAGTACACAA+TGG - chr8_3:7048701-7048720 None:intergenic 25.0%
! CATTGTGTACTAATATATGA+AGG + chr8_3:7048699-7048718 Msa1273320:intron 25.0%
!! TTTTATTACCGTTGAAACTT+GGG - chr8_3:7048877-7048896 None:intergenic 25.0%
! TGAACAGACCTAATTAATAA+TGG - chr8_3:7049159-7049178 None:intergenic 25.0%
! TATTTCAGTTTCTATTCTTC+TGG + chr8_3:7049244-7049263 Msa1273320:three_prime_UTR 25.0%
! ATTTCAGTTTCTATTCTTCT+GGG + chr8_3:7049245-7049264 Msa1273320:three_prime_UTR 25.0%
!!! AGTATTGATTCTGTATTGTA+TGG + chr8_3:7049314-7049333 Msa1273320:three_prime_UTR 25.0%
!! TTGGAGATTTTGATGAATTG+GGG - chr8_3:7045712-7045731 None:intergenic 30.0%
AAGAGAATTCAAAGAAGTAG+TGG - chr8_3:7045757-7045776 None:intergenic 30.0%
ACAAAATGAACTTACGTTTG+AGG - chr8_3:7045875-7045894 None:intergenic 30.0%
TGAAAAAACAATCTTGGGTT+TGG - chr8_3:7045985-7046004 None:intergenic 30.0%
! TGGGTTGAAAAAACAATCTT+GGG - chr8_3:7045990-7046009 None:intergenic 30.0%
!! TTGGGTTGAAAAAACAATCT+TGG - chr8_3:7045991-7046010 None:intergenic 30.0%
! CTGAATCAAAGTTAAGGTTT+TGG - chr8_3:7046033-7046052 None:intergenic 30.0%
!! TAAGTGCTGAATCAAAGTTA+AGG - chr8_3:7046039-7046058 None:intergenic 30.0%
! ATAGGAAAATTGGGAACTTT+TGG + chr8_3:7046145-7046164 Msa1273320:CDS 30.0%
! CTATCATTTTCTTGTTGCAA+TGG - chr8_3:7046490-7046509 None:intergenic 30.0%
GCAACAAGAAAATGATAGAA+TGG + chr8_3:7046492-7046511 Msa1273320:CDS 30.0%
AGAAAATGATAGAATGGAAG+TGG + chr8_3:7046498-7046517 Msa1273320:CDS 30.0%
AATTCACCAAATGGAGAAAT+TGG + chr8_3:7046556-7046575 Msa1273320:CDS 30.0%
! GGTGACAAAAAGTCTAAAAT+GGG - chr8_3:7046707-7046726 None:intergenic 30.0%
!!! TGAGTGTTACAATTTTTTCC+GGG + chr8_3:7046863-7046882 Msa1273320:intron 30.0%
!!! TGAAAACATATTTTAGTCCC+CGG - chr8_3:7046884-7046903 None:intergenic 30.0%
AAATGGTATCAAGAATTTCG+AGG + chr8_3:7047048-7047067 Msa1273320:CDS 30.0%
!!! ATGTAATCTTTTTGAGGTTC+AGG - chr8_3:7047139-7047158 None:intergenic 30.0%
AAATTCGACTTATGCAATTG+CGG + chr8_3:7047332-7047351 Msa1273320:intron 30.0%
CTGCATAGTTAACATATCTA+TGG + chr8_3:7047392-7047411 Msa1273320:intron 30.0%
TAATCATATAGATGGTCGTT+GGG - chr8_3:7047508-7047527 None:intergenic 30.0%
TGACATGGTAATCATATAGA+TGG - chr8_3:7047516-7047535 None:intergenic 30.0%
TTCCAAAACCATGATATTGT+GGG + chr8_3:7047575-7047594 Msa1273320:intron 30.0%
TTGATTGTAAATAGGTAAGG+AGG + chr8_3:7047678-7047697 Msa1273320:intron 30.0%
TGATTGTAAATAGGTAAGGA+GGG + chr8_3:7047679-7047698 Msa1273320:intron 30.0%
AATTATTCCTTGTAGGTTAC+TGG + chr8_3:7047869-7047888 Msa1273320:intron 30.0%
ATGCATTTACCTTTCCTAAA+TGG + chr8_3:7048393-7048412 Msa1273320:CDS 30.0%
CACCTTCATTAAATCCATTT+AGG - chr8_3:7048410-7048429 None:intergenic 30.0%
! CTAAATGGATTTAATGAAGG+TGG + chr8_3:7048408-7048427 Msa1273320:CDS 30.0%
CAGTGAAAAAGATCATTAAC+CGG - chr8_3:7048572-7048591 None:intergenic 30.0%
TAGTACACAATGGAACAATT+GGG - chr8_3:7048691-7048710 None:intergenic 30.0%
TTAGTACACAATGGAACAAT+TGG - chr8_3:7048692-7048711 None:intergenic 30.0%
TTTATTACCGTTGAAACTTG+GGG - chr8_3:7048876-7048895 None:intergenic 30.0%
!! GTTTTATTACCGTTGAAACT+TGG - chr8_3:7048878-7048897 None:intergenic 30.0%
TATATAATTCATGGGGTTGT+TGG - chr8_3:7049130-7049149 None:intergenic 30.0%
GATTGAAATTGAGACTTGAG+AGG - chr8_3:7045686-7045705 None:intergenic 35.0%
!! AGATTTTGATGAATTGGGGT+TGG - chr8_3:7045708-7045727 None:intergenic 35.0%
CCTTGAAACTAGAAGCAAAA+TGG - chr8_3:7045809-7045828 None:intergenic 35.0%
!!! CCATTTTGCTTCTAGTTTCA+AGG + chr8_3:7045806-7045825 Msa1273320:five_prime_UTR 35.0%
! AAACAATCTTGGGTTTGGTA+AGG - chr8_3:7045980-7045999 None:intergenic 35.0%
TTGAACATGTTGTTGGGATT+TGG - chr8_3:7046100-7046119 None:intergenic 35.0%
ACAACATTCTTCTAACCCTT+TGG + chr8_3:7046177-7046196 Msa1273320:CDS 35.0%
TCATCATTGGTACAACCAAA+GGG - chr8_3:7046195-7046214 None:intergenic 35.0%
TTCATCATTGGTACAACCAA+AGG - chr8_3:7046196-7046215 None:intergenic 35.0%
GCAAAAACCAATGTCTAATG+TGG + chr8_3:7046237-7046256 Msa1273320:CDS 35.0%
AATTCTGCCACATTAGACAT+TGG - chr8_3:7046247-7046266 None:intergenic 35.0%
!!! TGATCCTGGTTTTGTTCAAA+GGG + chr8_3:7046273-7046292 Msa1273320:CDS 35.0%
! GCTGCAAAATTTTCTTGCTT+TGG + chr8_3:7046295-7046314 Msa1273320:CDS 35.0%
AGCAAGAGTTTCAATGAAAG+AGG + chr8_3:7046319-7046338 Msa1273320:CDS 35.0%
CAATGAAAGAGGTAACCAAA+TGG + chr8_3:7046330-7046349 Msa1273320:CDS 35.0%
CAACATTGTTCATCACCATT+TGG - chr8_3:7046348-7046367 None:intergenic 35.0%
AGTCCATCACTCAAAACATT+TGG + chr8_3:7046430-7046449 Msa1273320:CDS 35.0%
!! GATCCAAATGTTTTGAGTGA+TGG - chr8_3:7046436-7046455 None:intergenic 35.0%
TCTGAGCAAAATTCACCAAA+TGG + chr8_3:7046547-7046566 Msa1273320:CDS 35.0%
ATTCATATCAGGTGAAGCTT+TGG - chr8_3:7046584-7046603 None:intergenic 35.0%
CTTCACCTGATATGAATTCA+AGG + chr8_3:7046587-7046606 Msa1273320:CDS 35.0%
CTCTTCCTTGAATTCATATC+AGG - chr8_3:7046595-7046614 None:intergenic 35.0%
AGAAAAGCTTCTTCTTCCAA+AGG + chr8_3:7046613-7046632 Msa1273320:CDS 35.0%
! TTTGTTGGATTGGAAGAGTT+TGG - chr8_3:7046646-7046665 None:intergenic 35.0%
AAACTCTTCCAATCCAACAA+AGG + chr8_3:7046645-7046664 Msa1273320:CDS 35.0%
CTTTAGTGCTTTACCTTTGT+TGG - chr8_3:7046661-7046680 None:intergenic 35.0%
!!! GCTGCAATTTTTTAAGAGTG+CGG + chr8_3:7046680-7046699 Msa1273320:intron 35.0%
CGGTGACAAAAAGTCTAAAA+TGG - chr8_3:7046708-7046727 None:intergenic 35.0%
!!! GAGTGTTACAATTTTTTCCG+GGG + chr8_3:7046864-7046883 Msa1273320:intron 35.0%
!!! TTTTGACTTTAGGGTGTAGA+AGG + chr8_3:7046968-7046987 Msa1273320:intron 35.0%
TGCATTTGTAGTACCTTCTT+TGG - chr8_3:7047080-7047099 None:intergenic 35.0%
!! AAAGAAGGTACTACAAATGC+AGG + chr8_3:7047079-7047098 Msa1273320:CDS 35.0%
!! AAGAAGGTACTACAAATGCA+GGG + chr8_3:7047080-7047099 Msa1273320:CDS 35.0%
!!! TAATCTTTTTGAGGTTCAGG+AGG - chr8_3:7047136-7047155 None:intergenic 35.0%
GTAATCATATAGATGGTCGT+TGG - chr8_3:7047509-7047528 None:intergenic 35.0%
ACCATGTCAATGCGTTAAAT+CGG + chr8_3:7047527-7047546 Msa1273320:intron 35.0%
CTTCCAAAACCATGATATTG+TGG + chr8_3:7047574-7047593 Msa1273320:intron 35.0%
GCAACTACTATTGGATATTG+TGG - chr8_3:7047601-7047620 None:intergenic 35.0%
GTCTTCAGTGAATACAAAGA+TGG + chr8_3:7048059-7048078 Msa1273320:CDS 35.0%
! ATGGTACTGAGGAATCTAAT+TGG - chr8_3:7048254-7048273 None:intergenic 35.0%
!!! ATGAATAGCTTGGTTTTGCT+GGG - chr8_3:7048295-7048314 None:intergenic 35.0%
!!! TATGAATAGCTTGGTTTTGC+TGG - chr8_3:7048296-7048315 None:intergenic 35.0%
! ATCAAGTGTTTGAGTTCTAC+CGG + chr8_3:7048550-7048569 Msa1273320:intron 35.0%
! GTCTTAATTATCTGGTTCCT+AGG - chr8_3:7048621-7048640 None:intergenic 35.0%
TTAAACACCGTTGTTCAGAT+GGG + chr8_3:7048812-7048831 Msa1273320:CDS 35.0%
! GTGTATTCCTGTTTGAAGTT+TGG - chr8_3:7048844-7048863 None:intergenic 35.0%
!!! ACTTATTTTTGGTCCAATGC+AGG + chr8_3:7048995-7049014 Msa1273320:intron 35.0%
!! TGATTGATTTGAACCTGCAT+TGG - chr8_3:7049011-7049030 None:intergenic 35.0%
TTCAATTCAGGCGTAATGAA+AGG - chr8_3:7049061-7049080 None:intergenic 35.0%
TTGAGAGGAAAGACTCTTTG+AGG - chr8_3:7045671-7045690 None:intergenic 40.0%
TGTGGCAAAGAGAGACTAAT+TGG - chr8_3:7045731-7045750 None:intergenic 40.0%
TCAAAGAAGTAGTGGCAATG+TGG - chr8_3:7045749-7045768 None:intergenic 40.0%
AACATGTTGTTGGGATTTGG+TGG - chr8_3:7046097-7046116 None:intergenic 40.0%
CTTTGAACAAAACCAGGATC+AGG - chr8_3:7046274-7046293 None:intergenic 40.0%
!!! CTGATCCTGGTTTTGTTCAA+AGG + chr8_3:7046272-7046291 Msa1273320:CDS 40.0%
TTGGCACCAATTTCTCCATT+TGG - chr8_3:7046565-7046584 None:intergenic 40.0%
!!! AGAGTTTGGTGCTTTTCCTT+TGG - chr8_3:7046632-7046651 None:intergenic 40.0%
GTGCTTTACCTTTGTTGGAT+TGG - chr8_3:7046656-7046675 None:intergenic 40.0%
ATTGAGTCTCGCAGTTGTTT+CGG - chr8_3:7046728-7046747 None:intergenic 40.0%
GTCCATGCCTTTAAACAGTA+TGG + chr8_3:7046779-7046798 Msa1273320:intron 40.0%
GTCCATACTGTTTAAAGGCA+TGG - chr8_3:7046784-7046803 None:intergenic 40.0%
GTGGGTGAGAGAAATGAAAA+TGG + chr8_3:7047031-7047050 Msa1273320:CDS 40.0%
!! AGAAGGTACTACAAATGCAG+GGG + chr8_3:7047081-7047100 Msa1273320:CDS 40.0%
ATTCATGTCAGAGCAAGAAG+AGG + chr8_3:7047157-7047176 Msa1273320:CDS 40.0%
TTCATGTCAGAGCAAGAAGA+GGG + chr8_3:7047158-7047177 Msa1273320:CDS 40.0%
TATTGTGGCCCACAATATCA+TGG - chr8_3:7047586-7047605 None:intergenic 40.0%
TCTTGTACCAGGTTGCAATA+AGG + chr8_3:7047736-7047755 Msa1273320:CDS 40.0%
TTGCTTACCTTATTGCAACC+TGG - chr8_3:7047746-7047765 None:intergenic 40.0%
! TGCTTTTCCAGTAACCTACA+AGG - chr8_3:7047879-7047898 None:intergenic 40.0%
! TCCTCAGTACCATCCTTTTA+TGG + chr8_3:7048261-7048280 Msa1273320:CDS 40.0%
! CCTCAGTACCATCCTTTTAT+GGG + chr8_3:7048262-7048281 Msa1273320:CDS 40.0%
!!! TGAATAGCTTGGTTTTGCTG+GGG - chr8_3:7048294-7048313 None:intergenic 40.0%
TGGCACAAAGAAGAATCCAA+TGG - chr8_3:7048360-7048379 None:intergenic 40.0%
ATTTAATGAAGGTGGCTCTC+AGG + chr8_3:7048416-7048435 Msa1273320:CDS 40.0%
GTATCCATTAGCATTCTCTG+AGG + chr8_3:7048784-7048803 Msa1273320:intron 40.0%
TCATCCTCAGAGAATGCTAA+TGG - chr8_3:7048791-7048810 None:intergenic 40.0%
CTTAAACACCGTTGTTCAGA+TGG + chr8_3:7048811-7048830 Msa1273320:CDS 40.0%
GATTTGGCCAAACTTCAAAC+AGG + chr8_3:7048834-7048853 Msa1273320:CDS 40.0%
! TTGAAACTTGGGGAGTGTAT+TGG - chr8_3:7048866-7048885 None:intergenic 40.0%
ATACACTCCCCAAGTTTCAA+CGG + chr8_3:7048866-7048885 Msa1273320:CDS 40.0%
!! CCGTTGACTTGTCCCAATTT+GGG - chr8_3:7046009-7046028 None:intergenic 45.0%
CCCAAATTGGGACAAGTCAA+CGG + chr8_3:7046006-7046025 Msa1273320:CDS 45.0%
!! TCCGTTGACTTGTCCCAATT+TGG - chr8_3:7046010-7046029 None:intergenic 45.0%
GGAAGTGGCTAATTCTCAAG+AGG + chr8_3:7046513-7046532 Msa1273320:CDS 45.0%
!! CTTTAGGGTGTAGAAGGTAG+TGG + chr8_3:7046974-7046993 Msa1273320:intron 45.0%
TTCGAGGAAGAGACCAAAGA+AGG + chr8_3:7047064-7047083 Msa1273320:CDS 45.0%
! GCCGATTTAACGCATTGACA+TGG - chr8_3:7047531-7047550 None:intergenic 45.0%
! GGCCCACAATATCATGGTTT+TGG - chr8_3:7047580-7047599 None:intergenic 45.0%
GGAGGGAGAAAATAAGTGAG+AGG + chr8_3:7047696-7047715 Msa1273320:CDS 45.0%
CTTCTCCAAGATCTTGTACC+AGG + chr8_3:7047725-7047744 Msa1273320:CDS 45.0%
TGCAACCTGGTACAAGATCT+TGG - chr8_3:7047733-7047752 None:intergenic 45.0%
CCCATAAAAGGATGGTACTG+AGG - chr8_3:7048265-7048284 None:intergenic 45.0%
GGTTGTTGCCCATAAAAGGA+TGG - chr8_3:7048273-7048292 None:intergenic 45.0%
CAGTGGGTCCCATTTGTATT+AGG - chr8_3:7048327-7048346 None:intergenic 45.0%
CTATCAAGCTCGCTATTCCT+AGG + chr8_3:7048601-7048620 Msa1273320:intron 45.0%
ACCGTTGTTCAGATGGGATT+TGG + chr8_3:7048818-7048837 Msa1273320:CDS 45.0%
GCCAAATCCCATCTGAACAA+CGG - chr8_3:7048822-7048841 None:intergenic 45.0%
! AGCAGTTTTCCTGATCCTCT+GGG - chr8_3:7049085-7049104 None:intergenic 45.0%
!!! AATTTTTTTTTTTTAATGTT+GGG + chr8_3:7046921-7046940 Msa1273320:intron 5.0%
! TGGTGATGATGTAGCTGCTG+GGG - chr8_3:7046077-7046096 None:intergenic 50.0%
! GTGGTGATGATGTAGCTGCT+GGG - chr8_3:7046078-7046097 None:intergenic 50.0%
GCAGAATTCTCACCTGATCC+TGG + chr8_3:7046259-7046278 Msa1273320:CDS 50.0%
GCAGCCCTTTGAACAAAACC+AGG - chr8_3:7046280-7046299 None:intergenic 50.0%
! GTCATTGCAGCGTCAAGTTG+AGG + chr8_3:7047931-7047950 Msa1273320:CDS 50.0%
CTGGGGTTGTTGCCCATAAA+AGG - chr8_3:7048277-7048296 None:intergenic 50.0%
CAATGGTTCCACTGAGCAGT+GGG - chr8_3:7048343-7048362 None:intergenic 50.0%
GATCCTCTGGGCTTCAATTC+AGG - chr8_3:7049073-7049092 None:intergenic 50.0%
GAATTGAAGCCCAGAGGATC+AGG + chr8_3:7049073-7049092 Msa1273320:three_prime_UTR 50.0%
! CAGCAGTTTTCCTGATCCTC+TGG - chr8_3:7049086-7049105 None:intergenic 50.0%
! GGTGGTGATGATGTAGCTGC+TGG - chr8_3:7046079-7046098 None:intergenic 55.0%
AAATGGGACCCACTGCTCAG+TGG + chr8_3:7048332-7048351 Msa1273320:CDS 55.0%
CCAATGGTTCCACTGAGCAG+TGG - chr8_3:7048344-7048363 None:intergenic 55.0%
CCACTGCTCAGTGGAACCAT+TGG + chr8_3:7048341-7048360 Msa1273320:CDS 55.0%
ACGCCTGAATTGAAGCCCAG+AGG + chr8_3:7049067-7049086 Msa1273320:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 7045658 7049401 7045658 ID=Msa1273320;Name=Msa1273320
chr8_3 mRNA 7045658 7049401 7045658 ID=Msa1273320-mRNA-1;Parent=Msa1273320;Name=Msa1273320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=283|1|1|1|1|1|8|347|511
chr8_3 exon 7045658 7046666 7045658 ID=Msa1273320-mRNA-1:exon:2739;Parent=Msa1273320-mRNA-1
chr8_3 exon 7046980 7047213 7046980 ID=Msa1273320-mRNA-1:exon:2740;Parent=Msa1273320-mRNA-1
chr8_3 exon 7047692 7047757 7047692 ID=Msa1273320-mRNA-1:exon:2741;Parent=Msa1273320-mRNA-1
chr8_3 exon 7047884 7047952 7047884 ID=Msa1273320-mRNA-1:exon:2742;Parent=Msa1273320-mRNA-1
chr8_3 exon 7048042 7048116 7048042 ID=Msa1273320-mRNA-1:exon:2743;Parent=Msa1273320-mRNA-1
chr8_3 exon 7048213 7048437 7048213 ID=Msa1273320-mRNA-1:exon:2744;Parent=Msa1273320-mRNA-1
chr8_3 exon 7048785 7048887 7048785 ID=Msa1273320-mRNA-1:exon:2745;Parent=Msa1273320-mRNA-1
chr8_3 exon 7049017 7049401 7049017 ID=Msa1273320-mRNA-1:exon:2746;Parent=Msa1273320-mRNA-1
chr8_3 five_prime_UTR 7045658 7045940 7045658 ID=Msa1273320-mRNA-1:five_prime_utr;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7045941 7046666 7045941 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7046980 7047213 7046980 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7047692 7047757 7047692 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7047884 7047952 7047884 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7048042 7048116 7048042 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7048213 7048437 7048213 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7048785 7048887 7048785 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 CDS 7049017 7049054 7049017 ID=Msa1273320-mRNA-1:cds;Parent=Msa1273320-mRNA-1
chr8_3 three_prime_UTR 7049055 7049401 7049055 ID=Msa1273320-mRNA-1:three_prime_utr;Parent=Msa1273320-mRNA-1
Gene Sequence

>Msa1273320

ATGGAAAACCAATTCTTTTTAAATGCTGGATTTGAACCTTACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAAGTCAACGGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCATCCCCAGCAGCTACATCATCACCACCAAATCCCAACAACATGTTCAATGAAAATTTTGTGATGAGAGAATTAATAGGAAAATTGGGAACTTTTGGTGAGATCTCACAACATTCTTCTAACCCTTTGGTTGTACCAATGATGAACCATTTTATCAAAGAAAATATGCAAAAACCAATGTCTAATGTGGCAGAATTCTCACCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAGAGTTTCAATGAAAGAGGTAACCAAATGGTGATGAACAATGTTGACTTAGCTCAAAGATCTCATACTTTAATGGAAAATGGAATGAAGTTAACAAGAGTTTCAAGTAGTCCATCACTCAAAACATTTGGATCTCAAATGATGAATCATGACAACAAGAATTCTCCATTGCAACAAGAAAATGATAGAATGGAAGTGGCTAATTCTCAAGAGGAATCTACAATATCTGAGCAAAATTCACCAAATGGAGAAATTGGTGCCAAAGCTTCACCTGATATGAATTCAAGGAAGAGAAAAGCTTCTTCTTCCAAAGGAAAAGCACCAAACTCTTCCAATCCAACAAAGGGTGTAGAAGGTAGTGGTGAAGACTTAAATGCAAAGAAAATTAAGGTAAATGTGGGTGAGAGAAATGAAAATGGTATCAAGAATTTCGAGGAAGAGACCAAAGAAGGTACTACAAATGCAGGGGAAGAGAAACAGAACAAGAGTGACACAAAACCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGGCAAGCTACTGACAGTCACAGTCTTGCAGAACGAGTAAGGAGGGAGAAAATAAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCAGTGAATACAAAGATGGATTTAAGTATTGAAAGTCTTGTTGTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATGTTCCAATTAGATTCCTCAGTACCATCCTTTTATGGGCAACAACCCCAGCAAAACCAAGCTATTCATAATAACATTCCTAATACAAATGGGACCCACTGCTCAGTGGAACCATTGGATTCTTCTTTGTGCCATAATAATATTGGCATGCATTTACCTTTCCTAAATGGATTTAATGAAGGTGGCTCTCAGTATCCATTAGCATTCTCTGAGGATGACTTAAACACCGTTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGAATACACCAATACACTCCCCAAGTTTCAACGGTTCAAATCAATCAACACAAATGAAAATTGAGCTCTAA
Protein sequence

>Msa1273320

MENQFFLNAGFEPYQTQDCFFNPNWDKSTDQNLNFDSALSSIVSSPAATSSPPNPNNMFNENFVMRELIGKLGTFGEISQHSSNPLVVPMMNHFIKENMQKPMSNVAEFSPDPGFVQRAAKFSCFGSKSFNERGNQMVMNNVDLAQRSHTLMENGMKLTRVSSSPSLKTFGSQMMNHDNKNSPLQQENDRMEVANSQEESTISEQNSPNGEIGAKASPDMNSRKRKASSSKGKAPNSSNPTKGVEGSGEDLNAKKIKVNVGERNENGIKNFEEETKEGTTNAGEEKQNKSDTKPPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTKMDLSIESLVVSKDIFQSNNSLQNSMFQLDSSVPSFYGQQPQQNQAIHNNIPNTNGTHCSVEPLDSSLCHNNIGMHLPFLNGFNEGGSQYPLAFSEDDLNTVVQMGFGQTSNRNTPIHSPSFNGSNQSTQMKIEL*