Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183990 | XP_013470063.1 | 99.611 | 257 | 0 | 1 | 1 | 256 | 1 | 257 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183990 | sp|Q54DD7|UNC50_DICDI | 44.275 | 262 | 139 | 3 | 1 | 256 | 1 | 261 | 1.05e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183990 | A0A072VQZ1 | 99.611 | 257 | 0 | 1 | 1 | 256 | 1 | 257 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021240 | Msa0183990 | -0.808010 | 3.821476e-50 | -8.615850e-47 |
| Msa0037270 | Msa0183990 | -0.813527 | 2.446403e-51 | -8.615850e-47 |
| Msa0038750 | Msa0183990 | -0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0040930 | Msa0183990 | 0.802860 | 4.591395e-49 | -8.615850e-47 |
| Msa0042210 | Msa0183990 | -0.809437 | 1.893469e-50 | -8.615850e-47 |
| Msa0044700 | Msa0183990 | -0.829476 | 5.039781e-55 | -8.615850e-47 |
| Msa0046020 | Msa0183990 | -0.800923 | 1.147771e-48 | -8.615850e-47 |
| Msa0051710 | Msa0183990 | -0.822832 | 1.918335e-53 | -8.615850e-47 |
| Msa0056910 | Msa0183990 | 0.816801 | 4.585789e-52 | -8.615850e-47 |
| Msa0064490 | Msa0183990 | -0.809948 | 1.470100e-50 | -8.615850e-47 |
| Msa0069070 | Msa0183990 | -0.803870 | 2.835785e-49 | -8.615850e-47 |
| Msa0085470 | Msa0183990 | -0.807087 | 5.998689e-50 | -8.615850e-47 |
| Msa0089700 | Msa0183990 | -0.812680 | 3.753758e-51 | -8.615850e-47 |
| Msa0113910 | Msa0183990 | -0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa0122170 | Msa0183990 | -0.817371 | 3.413820e-52 | -8.615850e-47 |
| Msa0123960 | Msa0183990 | -0.821616 | 3.673696e-53 | -8.615850e-47 |
| Msa0133140 | Msa0183990 | -0.810401 | 1.173843e-50 | -8.615850e-47 |
| Msa0136560 | Msa0183990 | 0.956680 | 1.665380e-114 | -8.615850e-47 |
| Msa0175210 | Msa0183990 | -0.802048 | 6.749742e-49 | -8.615850e-47 |
| Msa0183990 | Msa0224180 | -0.812701 | 3.713001e-51 | -8.615850e-47 |
| Msa0183990 | Msa0264710 | 0.803004 | 4.287366e-49 | -8.615850e-47 |
| Msa0183990 | Msa0270230 | -0.800881 | 1.170427e-48 | -8.615850e-47 |
| Msa0183990 | Msa0291320 | 0.823598 | 1.270887e-53 | -8.615850e-47 |
| Msa0183990 | Msa0307820 | -0.805798 | 1.121711e-49 | -8.615850e-47 |
| Msa0183990 | Msa0329050 | -0.807885 | 4.062167e-50 | -8.615850e-47 |
| Msa0183990 | Msa0369100 | -0.800902 | 1.158929e-48 | -8.615850e-47 |
| Msa0183990 | Msa0369430 | -0.810808 | 9.587242e-51 | -8.615850e-47 |
| Msa0183990 | Msa0378530 | -0.805521 | 1.282467e-49 | -8.615850e-47 |
| Msa0183990 | Msa0386230 | -0.812386 | 4.351309e-51 | -8.615850e-47 |
| Msa0183990 | Msa0390760 | -0.811914 | 5.515428e-51 | -8.615850e-47 |
| Msa0183990 | Msa0404710 | -0.813103 | 3.032171e-51 | -8.615850e-47 |
| Msa0183990 | Msa0431550 | -0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa0183990 | Msa0434830 | -0.802298 | 5.995212e-49 | -8.615850e-47 |
| Msa0183990 | Msa0462240 | -0.824867 | 6.394068e-54 | -8.615850e-47 |
| Msa0183990 | Msa0462530 | -0.813356 | 2.667958e-51 | -8.615850e-47 |
| Msa0183990 | Msa0474290 | -0.817573 | 3.074560e-52 | -8.615850e-47 |
| Msa0183990 | Msa0476560 | -0.800593 | 1.340288e-48 | -8.615850e-47 |
| Msa0183990 | Msa0504310 | -0.827451 | 1.553580e-54 | -8.615850e-47 |
| Msa0183990 | Msa0506700 | -0.802992 | 4.311639e-49 | -8.615850e-47 |
| Msa0183990 | Msa0514630 | -0.832005 | 1.209882e-55 | -8.615850e-47 |
| Msa0183990 | Msa0518720 | -0.815488 | 9.008539e-52 | -8.615850e-47 |
| Msa0183990 | Msa0548260 | -0.813953 | 1.971451e-51 | -8.615850e-47 |
| Msa0183990 | Msa0565430 | -0.812444 | 4.226329e-51 | -8.615850e-47 |
| Msa0183990 | Msa0566090 | -0.810274 | 1.250311e-50 | -8.615850e-47 |
| Msa0183990 | Msa0598470 | -0.802894 | 4.517712e-49 | -8.615850e-47 |
| Msa0183990 | Msa0603180 | -0.822966 | 1.785392e-53 | -8.615850e-47 |
| Msa0183990 | Msa0619530 | -0.800195 | 1.615298e-48 | -8.615850e-47 |
| Msa0183990 | Msa0644340 | 0.808005 | 3.830922e-50 | -8.615850e-47 |
| Msa0183990 | Msa0661800 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0183990 | Msa0667680 | -0.801322 | 9.510558e-49 | -8.615850e-47 |
| Msa0183990 | Msa0684030 | -0.815889 | 7.335869e-52 | -8.615850e-47 |
| Msa0183990 | Msa0706130 | -0.801993 | 6.926306e-49 | -8.615850e-47 |
| Msa0183990 | Msa0711860 | -0.824958 | 6.086652e-54 | -8.615850e-47 |
| Msa0183990 | Msa0750200 | -0.803382 | 3.579696e-49 | -8.615850e-47 |
| Msa0183990 | Msa0752950 | -0.804670 | 1.932801e-49 | -8.615850e-47 |
| Msa0183990 | Msa0754880 | -0.818370 | 2.030987e-52 | -8.615850e-47 |
| Msa0183990 | Msa0790380 | -0.807120 | 5.901702e-50 | -8.615850e-47 |
| Msa0183990 | Msa0793130 | -0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0183990 | Msa0793530 | -0.808003 | 3.833240e-50 | -8.615850e-47 |
| Msa0183990 | Msa0796840 | -0.800030 | 1.745021e-48 | -8.615850e-47 |
| Msa0183990 | Msa0833980 | -0.806148 | 9.467759e-50 | -8.615850e-47 |
| Msa0183990 | Msa0841570 | -0.800525 | 1.383764e-48 | -8.615850e-47 |
| Msa0183990 | Msa0904590 | 0.814646 | 1.385546e-51 | -8.615850e-47 |
| Msa0183990 | Msa0933320 | -0.802959 | 4.379359e-49 | -8.615850e-47 |
| Msa0183990 | Msa1026650 | 0.993856 | 9.895974e-203 | -8.615850e-47 |
| Msa0183990 | Msa1039440 | -0.801100 | 1.055750e-48 | -8.615850e-47 |
| Msa0183990 | Msa1057340 | -0.802168 | 6.375336e-49 | -8.615850e-47 |
| Msa0183990 | Msa1058550 | -0.815512 | 8.898668e-52 | -8.615850e-47 |
| Msa0183990 | Msa1068010 | -0.801410 | 9.123282e-49 | -8.615850e-47 |
| Msa0183990 | Msa1128520 | -0.813526 | 2.447964e-51 | -8.615850e-47 |
| Msa0183990 | Msa1129510 | -0.800126 | 1.668066e-48 | -8.615850e-47 |
| Msa0183990 | Msa1132250 | -0.806801 | 6.896655e-50 | -8.615850e-47 |
| Msa0183990 | Msa1156100 | -0.813943 | 1.981951e-51 | -8.615850e-47 |
| Msa0183990 | Msa1181210 | 0.804960 | 1.680399e-49 | -8.615850e-47 |
| Msa0183990 | Msa1191540 | -0.807027 | 6.177029e-50 | -8.615850e-47 |
| Msa0183990 | Msa1203320 | -0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0183990 | Msa1207770 | -0.806895 | 6.586825e-50 | -8.615850e-47 |
| Msa0183990 | Msa1215540 | -0.809039 | 2.304491e-50 | -8.615850e-47 |
| Msa0183990 | Msa1223540 | 0.800878 | 1.171958e-48 | -8.615850e-47 |
| Msa0183990 | Msa1223620 | 0.802773 | 4.785471e-49 | -8.615850e-47 |
| Msa0183990 | Msa1225280 | -0.814064 | 1.863043e-51 | -8.615850e-47 |
| Msa0183990 | Msa1257860 | -0.817270 | 3.596800e-52 | -8.615850e-47 |
| Msa0183990 | Msa1270850 | -0.808121 | 3.618860e-50 | -8.615850e-47 |
| Msa0183990 | Msa1273320 | 0.812815 | 3.506221e-51 | -8.615850e-47 |
| Msa0183990 | Msa1286470 | -0.810618 | 1.053951e-50 | -8.615850e-47 |
| Msa0183990 | Msa1287100 | -0.816650 | 4.958329e-52 | -8.615850e-47 |
| Msa0183990 | Msa1297550 | -0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa0183990 | Msa1331530 | -0.810723 | 1.000507e-50 | -8.615850e-47 |
| Msa0183990 | Msa1335200 | -0.825479 | 4.582615e-54 | -8.615850e-47 |
| Msa0183990 | Msa1338810 | -0.827617 | 1.417225e-54 | -8.615850e-47 |
| Msa0183990 | Msa1342110 | -0.818027 | 2.427848e-52 | -8.615850e-47 |
| Msa0183990 | Msa1350130 | -0.821214 | 4.548240e-53 | -8.615850e-47 |
| Msa0183990 | Msa1361580 | -0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0183990 | Msa1369400 | -0.820430 | 6.887310e-53 | -8.615850e-47 |
| Msa0183990 | Msa1373420 | -0.803925 | 2.761919e-49 | -8.615850e-47 |
| Msa0183990 | Msa1375650 | -0.812061 | 5.123013e-51 | -8.615850e-47 |
| Msa0183990 | Msa1388010 | -0.817651 | 2.952854e-52 | -8.615850e-47 |
| Msa0183990 | Msa1400830 | -0.806593 | 7.630120e-50 | -8.615850e-47 |
| Msa0183990 | Msa1403590 | -0.812144 | 4.913602e-51 | -8.615850e-47 |
| Msa0183990 | Msa1404810 | -0.813386 | 2.627468e-51 | -8.615850e-47 |
| Msa0183990 | Msa1440990 | -0.806385 | 8.440467e-50 | -8.615850e-47 |
| Msa0183990 | Msa1443280 | -0.809088 | 2.249346e-50 | -8.615850e-47 |
| Msa0183990 | Msa1449270 | -0.817494 | 3.202784e-52 | -8.615850e-47 |
| Msa0183990 | Msa1460340 | -0.810009 | 1.426041e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183990 | MtrunA17_Chr1g0208051 | 99.611 | 257 | 0 | 1 | 1 | 256 | 1 | 257 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183990 | AT2G15240.1 | 85.532 | 235 | 34 | 0 | 22 | 256 | 18 | 252 | 4.89e-144 | 404 |
Find 80 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTGACTGGCATATTTC+TGG | 0.151764 | 1_4:-73107592 | Msa0183990:CDS |
| AATAGATTTGATAGCAATTC+TGG | 0.203453 | 1_4:+73106956 | None:intergenic |
| GGCCTACAATGATGCATTTC+CGG | 0.241107 | 1_4:+73106161 | None:intergenic |
| ACAATATGAGAAGGCTTAAA+TGG | 0.252992 | 1_4:-73106217 | Msa0183990:three_prime_UTR |
| CTATATACTTACACAACTTT+TGG | 0.255052 | 1_4:+73108946 | None:intergenic |
| TACCATTATCTAAATTTCTT+AGG | 0.266410 | 1_4:-73106911 | Msa0183990:CDS |
| ATCGCGTGCCCATTGATTCT+TGG | 0.282291 | 1_4:+73108099 | None:intergenic |
| TGTGATCTGCAGCCTTCTTT+TGG | 0.305006 | 1_4:-73108062 | Msa0183990:CDS |
| AAAGGTGGTCCTCTCCAAAA+AGG | 0.307456 | 1_4:+73106496 | None:intergenic |
| ATATGCCAGTCAATAGAAAA+TGG | 0.326818 | 1_4:+73107598 | None:intergenic |
| ACCAATTGGATACAGGAAAA+AGG | 0.338264 | 1_4:+73106478 | None:intergenic |
| TTCAGGTATGACCATAGTTC+TGG | 0.341007 | 1_4:-73107657 | Msa0183990:intron |
| GCCTACAATGATGCATTTCC+GGG | 0.345153 | 1_4:+73106162 | None:intergenic |
| GTAAGGAAGAAGAGTGGAAT+TGG | 0.353691 | 1_4:+73110210 | None:intergenic |
| AACCTAAGAAATTTAGATAA+TGG | 0.356946 | 1_4:+73106909 | None:intergenic |
| CTCGAAGATAAGAATTAGTT+AGG | 0.359359 | 1_4:+73107453 | None:intergenic |
| GCTATCAAATCTATTATTCA+TGG | 0.365343 | 1_4:-73106948 | Msa0183990:CDS |
| ACCGGAGAGGGGAGAGAGAA+AGG | 0.399521 | 1_4:-73110403 | Msa0183990:five_prime_UTR |
| ATAGAGGAGATAGAAAATAA+TGG | 0.413708 | 1_4:+73106999 | None:intergenic |
| AGGACAATTACTACACCAAT+TGG | 0.428443 | 1_4:+73106464 | None:intergenic |
| GATCGTTTCCGTAGCTGAAA+CGG | 0.434469 | 1_4:-73110319 | Msa0183990:five_prime_UTR |
| CCCTCTCCGGTACCTTGCTT+CGG | 0.434864 | 1_4:+73110415 | None:intergenic |
| TTCATTGTAGTGGCAACAAA+TGG | 0.444628 | 1_4:-73109013 | Msa0183990:intron |
| CTTCGATTGATAGTAGTAGA+AGG | 0.447661 | 1_4:+73106140 | None:intergenic |
| TCTCCTCTATTGGTGGCTCA+TGG | 0.448618 | 1_4:-73106986 | Msa0183990:CDS |
| CATTACTTCAGAACCTCAAC+AGG | 0.449759 | 1_4:+73106246 | None:intergenic |
| TGAAAGAATATATCGATTGT+TGG | 0.451253 | 1_4:+73105997 | None:intergenic |
| CTAAAATTTCTTTGTCAACT+CGG | 0.455629 | 1_4:-73106031 | Msa0183990:three_prime_UTR |
| AAACCATGAGCCACCAATAG+AGG | 0.456905 | 1_4:+73106983 | None:intergenic |
| GATTCGATCCGTTTCAGCTA+CGG | 0.457300 | 1_4:+73110311 | None:intergenic |
| CTGCAGATCACAACAAATGC+AGG | 0.457525 | 1_4:+73108073 | None:intergenic |
| CCCTTTCTCTCTCCCCTCTC+CGG | 0.458054 | 1_4:+73110402 | None:intergenic |
| GAAAGAATATATCGATTGTT+GGG | 0.458335 | 1_4:+73105998 | None:intergenic |
| CCGGAGAGGGGAGAGAGAAA+GGG | 0.459622 | 1_4:-73110402 | Msa0183990:five_prime_UTR |
| AATTAGAAACCAAGAATCAA+TGG | 0.462371 | 1_4:-73108108 | Msa0183990:intron |
| AAAGTGCATGGCCAGAACTA+TGG | 0.469079 | 1_4:+73107646 | None:intergenic |
| AATACTTACAAATTGGAGAA+AGG | 0.479211 | 1_4:+73106444 | None:intergenic |
| CCATATAGCAAAACAAACAT+TGG | 0.479630 | 1_4:+73107121 | None:intergenic |
| CCCCGGAAATGCATCATTGT+AGG | 0.482193 | 1_4:-73106163 | Msa0183990:three_prime_UTR |
| GCTGGAGTGATCATATTTGT+CGG | 0.487410 | 1_4:+73106292 | None:intergenic |
| ATGTTCATAAAGTATCTAGA+AGG | 0.490832 | 1_4:+73106324 | None:intergenic |
| TTGATAATTCTGCGGAGGTA+AGG | 0.492063 | 1_4:+73110193 | None:intergenic |
| TGTTCAACCACATAACTGTT+TGG | 0.493819 | 1_4:+73107422 | None:intergenic |
| CCGAAGCAAGGTACCGGAGA+GGG | 0.497725 | 1_4:-73110415 | Msa0183990:five_prime_UTR |
| CATATAGCAAAACAAACATT+GGG | 0.498728 | 1_4:+73107122 | None:intergenic |
| TTACCTCCGCAGAATTATCA+AGG | 0.501424 | 1_4:-73110191 | Msa0183990:intron |
| GGGTCGAGAGGAAGATGAAG+AGG | 0.502177 | 1_4:+73110231 | None:intergenic |
| TTACTACACCAATTGGATAC+AGG | 0.505412 | 1_4:+73106471 | None:intergenic |
| TAAGGAAGAAGAGTGGAATT+GGG | 0.507072 | 1_4:+73110211 | None:intergenic |
| AAGAGTGGAATTGGGTCGAG+AGG | 0.513571 | 1_4:+73110219 | None:intergenic |
| GACCAGTCCGTGTCCTGTTG+AGG | 0.516351 | 1_4:-73106259 | Msa0183990:three_prime_UTR |
| ATTAGAAACCAAGAATCAAT+GGG | 0.517637 | 1_4:-73108107 | Msa0183990:intron |
| AACCTCAACAGGACACGGAC+TGG | 0.533895 | 1_4:+73106257 | None:intergenic |
| CTGTTGAGGTTCTGAAGTAA+TGG | 0.538216 | 1_4:-73106245 | Msa0183990:three_prime_UTR |
| CTGAGTCCGAAGCAAGGTAC+CGG | 0.539109 | 1_4:-73110421 | Msa0183990:five_prime_UTR |
| CTAAATTTCTTAGGTTACGA+TGG | 0.539350 | 1_4:-73106902 | Msa0183990:intron |
| TAATTCTTATCTTCGAGAAG+AGG | 0.547601 | 1_4:-73107447 | Msa0183990:CDS |
| TTTGGCCCAAGTTAACATAG+TGG | 0.550327 | 1_4:-73110480 | None:intergenic |
| CGAAGCAAGGTACCGGAGAG+GGG | 0.550670 | 1_4:-73110414 | Msa0183990:five_prime_UTR |
| GTTTGACGAACGCAATACCC+CGG | 0.558320 | 1_4:-73106180 | Msa0183990:three_prime_UTR |
| AAGTTGCAACAGCCAAAAGA+AGG | 0.559727 | 1_4:+73108050 | None:intergenic |
| ATCAAATCTATTATTCATGG+TGG | 0.570031 | 1_4:-73106945 | Msa0183990:CDS |
| GAGCGTCCTTTCGAAACTGT+TGG | 0.575354 | 1_4:+73110265 | None:intergenic |
| AATCGATATATTCTTTCATG+AGG | 0.584441 | 1_4:-73105992 | Msa0183990:three_prime_UTR |
| TTCAGAACCTCAACAGGACA+CGG | 0.590512 | 1_4:+73106252 | None:intergenic |
| TCAAATCTATTATTCATGGT+GGG | 0.597237 | 1_4:-73106944 | Msa0183990:CDS |
| TGGTTGAACAGCGTGTTGAA+TGG | 0.609570 | 1_4:-73107409 | Msa0183990:intron |
| AGAGGCTCCAAACAGTTATG+TGG | 0.616391 | 1_4:-73107429 | Msa0183990:CDS |
| ATGGAGGCTACAATATGAGA+AGG | 0.618334 | 1_4:-73106226 | Msa0183990:three_prime_UTR |
| TTGAGGTTCTGAAGTAATGG+AGG | 0.622168 | 1_4:-73106242 | Msa0183990:three_prime_UTR |
| ATGTTACCAACAGTTTCGAA+AGG | 0.623237 | 1_4:-73110271 | Msa0183990:CDS |
| TGCAGATCACAACAAATGCA+GGG | 0.638452 | 1_4:+73108074 | None:intergenic |
| AGAATATATCGATTGTTGGG+AGG | 0.643666 | 1_4:+73106001 | None:intergenic |
| GTACCTTGATAATTCTGCGG+AGG | 0.646223 | 1_4:+73110188 | None:intergenic |
| TCTGATCTGAGTCCGAAGCA+AGG | 0.651038 | 1_4:-73110427 | Msa0183990:five_prime_UTR |
| TGGGTACCTTGATAATTCTG+CGG | 0.658546 | 1_4:+73110185 | None:intergenic |
| GCGGAGGTAAGGAAGAAGAG+TGG | 0.669478 | 1_4:+73110204 | None:intergenic |
| ACTCAGATCAGAGATGAACA+AGG | 0.677067 | 1_4:+73110438 | None:intergenic |
| TCCGAAGCAAGGTACCGGAG+AGG | 0.702425 | 1_4:-73110416 | Msa0183990:five_prime_UTR |
| CCTACAATGATGCATTTCCG+GGG | 0.733756 | 1_4:+73106163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATTTAATCAAATAAAAT+AGG | + | chr1_4:73107582-73107601 | None:intergenic | 10.0% |
| !!! | AATGGATTTTTCTAAATAAA+AGG | + | chr1_4:73106696-73106715 | None:intergenic | 15.0% |
| !! | AAAAAGTAGATAATAGAAAA+TGG | + | chr1_4:73106714-73106733 | None:intergenic | 15.0% |
| !! | CATTATAATCCAAAATATTA+AGG | + | chr1_4:73107008-73107027 | None:intergenic | 15.0% |
| !! | AAAATCATAATATTCTCATT+AGG | - | chr1_4:73107174-73107193 | Msa0183990:intron | 15.0% |
| !!! | ATTTTGTTTTCTTTTCAATT+TGG | - | chr1_4:73107248-73107267 | Msa0183990:intron | 15.0% |
| !!! | AATTTTATTATTCATTGTAG+TGG | - | chr1_4:73107393-73107412 | Msa0183990:intron | 15.0% |
| !!! | TAAACAAAGCCTTAATATTT+TGG | - | chr1_4:73106996-73107015 | Msa0183990:CDS | 20.0% |
| !!! | TTGGATTATAATGTTTTGAA+TGG | - | chr1_4:73107015-73107034 | Msa0183990:intron | 20.0% |
| !! | TCTTGATGTTAAAAAAATGA+TGG | + | chr1_4:73107511-73107530 | None:intergenic | 20.0% |
| !!! | TCTGTATTGTTTTGATTTAT+TGG | - | chr1_4:73107800-73107819 | Msa0183990:intron | 20.0% |
| !!! | AAATGGATTTTTTTTCTTGA+AGG | + | chr1_4:73108089-73108108 | None:intergenic | 20.0% |
| !! | AATTAACTGCAACATTTAAA+TGG | + | chr1_4:73108106-73108125 | None:intergenic | 20.0% |
| !!! | TATTTGGTCAAATGTTATTT+AGG | - | chr1_4:73109114-73109133 | Msa0183990:intron | 20.0% |
| !! | AAAAACATCTTGAATTTAAG+TGG | - | chr1_4:73109366-73109385 | Msa0183990:intron | 20.0% |
| !! | TACCATTATCTAAATTTCTT+AGG | - | chr1_4:73109505-73109524 | Msa0183990:intron | 20.0% |
| !! | AACCTAAGAAATTTAGATAA+TGG | + | chr1_4:73109510-73109529 | None:intergenic | 20.0% |
| !! | CACATTAAATACTTACAAAT+TGG | + | chr1_4:73109982-73110001 | None:intergenic | 20.0% |
| !! | ATCACTGAAAATAAGAAATT+GGG | + | chr1_4:73110056-73110075 | None:intergenic | 20.0% |
| !! | AATCACTGAAAATAAGAAAT+TGG | + | chr1_4:73110057-73110076 | None:intergenic | 20.0% |
| ! | AAGTGAATTAGCGAAATTAA+GGG | + | chr1_4:73106285-73106304 | None:intergenic | 25.0% |
| ! | TAAAAGCGAACACATAATTT+AGG | + | chr1_4:73106498-73106517 | None:intergenic | 25.0% |
| ! | AATTAGAAGATGTTAGAATC+TGG | - | chr1_4:73106524-73106543 | Msa0183990:intron | 25.0% |
| ! | TAAATAAAAGGTTCACACAA+AGG | + | chr1_4:73106684-73106703 | None:intergenic | 25.0% |
| !! | GTTTTCTTTTCAATTTGGTA+TGG | - | chr1_4:73107253-73107272 | Msa0183990:intron | 25.0% |
| ! | AAAATAATAAGTATAGCGCA+AGG | + | chr1_4:73107308-73107327 | None:intergenic | 25.0% |
| ! | TAAAATTACAGAGAACGAAA+AGG | + | chr1_4:73107380-73107399 | None:intergenic | 25.0% |
| !! | CTATATACTTACACAACTTT+TGG | + | chr1_4:73107473-73107492 | None:intergenic | 25.0% |
| !!! | TATTGGTACATGTTTTAAAC+AGG | - | chr1_4:73107817-73107836 | Msa0183990:intron | 25.0% |
| !!! | ATTGGTACATGTTTTAAACA+GGG | - | chr1_4:73107818-73107837 | Msa0183990:intron | 25.0% |
| ! | GGATAATTAATTGCAGATAA+AGG | + | chr1_4:73107903-73107922 | None:intergenic | 25.0% |
| ! | GTGTTAGCATAGAAAATAAA+GGG | - | chr1_4:73107957-73107976 | Msa0183990:intron | 25.0% |
| ! | TGTTAGCATAGAAAATAAAG+GGG | - | chr1_4:73107958-73107977 | Msa0183990:intron | 25.0% |
| ! | GAGAAATATCTTGCATAAAT+TGG | - | chr1_4:73107998-73108017 | Msa0183990:intron | 25.0% |
| ! | AAATATCTTGCATAAATTGG+AGG | - | chr1_4:73108001-73108020 | Msa0183990:intron | 25.0% |
| !! | TGCAGTTAATTCTTTTGATA+AGG | - | chr1_4:73108115-73108134 | Msa0183990:intron | 25.0% |
| ! | ATGTAACTATATAGTGTTTC+AGG | - | chr1_4:73108191-73108210 | Msa0183990:intron | 25.0% |
| ! | AATTAGAAACCAAGAATCAA+TGG | - | chr1_4:73108308-73108327 | Msa0183990:intron | 25.0% |
| ! | ATTAGAAACCAAGAATCAAT+GGG | - | chr1_4:73108309-73108328 | Msa0183990:intron | 25.0% |
| ! | TTTGTTGCTCATATATTTAG+TGG | - | chr1_4:73108518-73108537 | Msa0183990:intron | 25.0% |
| !! | GTAACATGTTTCTATAAGAA+TGG | + | chr1_4:73108567-73108586 | None:intergenic | 25.0% |
| !! | TAATTTTCCCATTCATTTTC+AGG | - | chr1_4:73108742-73108761 | Msa0183990:intron | 25.0% |
| ! | AATCTAATGACTTGAAGAAA+AGG | + | chr1_4:73108894-73108913 | None:intergenic | 25.0% |
| !!! | ATTATATCTTTGGTTTTCCA+TGG | - | chr1_4:73109232-73109251 | Msa0183990:intron | 25.0% |
| ! | CATATAGCAAAACAAACATT+GGG | + | chr1_4:73109297-73109316 | None:intergenic | 25.0% |
| ! | ATAACAATTCATACTAACTG+AGG | + | chr1_4:73109333-73109352 | None:intergenic | 25.0% |
| ! | AGTATGAATTGTTATGATGT+TGG | - | chr1_4:73109338-73109357 | Msa0183990:intron | 25.0% |
| ! | ATAGAGGAGATAGAAAATAA+TGG | + | chr1_4:73109420-73109439 | None:intergenic | 25.0% |
| !! | TTATTTTCTATCTCCTCTAT+TGG | - | chr1_4:73109420-73109439 | Msa0183990:intron | 25.0% |
| !! | AATAGATTTGATAGCAATTC+TGG | + | chr1_4:73109463-73109482 | None:intergenic | 25.0% |
| ! | GCTATCAAATCTATTATTCA+TGG | - | chr1_4:73109468-73109487 | Msa0183990:intron | 25.0% |
| ! | ATCAAATCTATTATTCATGG+TGG | - | chr1_4:73109471-73109490 | Msa0183990:intron | 25.0% |
| ! | TCAAATCTATTATTCATGGT+GGG | - | chr1_4:73109472-73109491 | Msa0183990:intron | 25.0% |
| ! | TGATGCTTCAAAAGTTTAAT+TGG | + | chr1_4:73109712-73109731 | None:intergenic | 25.0% |
| ! | AAAACACCAAAAACAATACT+CGG | + | chr1_4:73109762-73109781 | None:intergenic | 25.0% |
| ! | ATTCAGAGCTATACATATTT+GGG | + | chr1_4:73109839-73109858 | None:intergenic | 25.0% |
| ! | AATTCAGAGCTATACATATT+TGG | + | chr1_4:73109840-73109859 | None:intergenic | 25.0% |
| !!! | AAATATGTATAGCTCTGAAT+TGG | - | chr1_4:73109839-73109858 | Msa0183990:intron | 25.0% |
| ! | AATACTTACAAATTGGAGAA+AGG | + | chr1_4:73109975-73109994 | None:intergenic | 25.0% |
| !! | TTATTTTCAGTGATTTTGAG+TGG | - | chr1_4:73110062-73110081 | Msa0183990:intron | 25.0% |
| !! | ATGTTCATAAAGTATCTAGA+AGG | + | chr1_4:73110095-73110114 | None:intergenic | 25.0% |
| ! | CTAAAATTTCTTTGTCAACT+CGG | - | chr1_4:73110385-73110404 | Msa0183990:five_prime_UTR | 25.0% |
| !! | GAAAGAATATATCGATTGTT+GGG | + | chr1_4:73110421-73110440 | None:intergenic | 25.0% |
| !! | TGAAAGAATATATCGATTGT+TGG | + | chr1_4:73110422-73110441 | None:intergenic | 25.0% |
| ! | AATCGATATATTCTTTCATG+AGG | - | chr1_4:73110424-73110443 | Msa0183990:five_prime_UTR | 25.0% |
| AAGAAATGAAGAGATCAGTT+GGG | + | chr1_4:73106253-73106272 | None:intergenic | 30.0% | |
| GAAGTGAATTAGCGAAATTA+AGG | + | chr1_4:73106286-73106305 | None:intergenic | 30.0% | |
| AACAGCATTTGCAATGAAAT+GGG | + | chr1_4:73106321-73106340 | None:intergenic | 30.0% | |
| TCAATAATTCATGAACTGAG+CGG | + | chr1_4:73106420-73106439 | None:intergenic | 30.0% | |
| !!! | ATCTACTTTTTTGTGTGAAC+CGG | - | chr1_4:73106723-73106742 | Msa0183990:intron | 30.0% |
| ! | TTCTTTTCAATTTGGTATGG+AGG | - | chr1_4:73107256-73107275 | Msa0183990:intron | 30.0% |
| !!! | TTTGCTGTATTTTTTGACTC+AGG | - | chr1_4:73107339-73107358 | Msa0183990:intron | 30.0% |
| ! | TGGATGTTGAATACACTTTT+TGG | - | chr1_4:73107423-73107442 | Msa0183990:CDS | 30.0% |
| !!! | CGTTTTTTGTACACTTGATA+TGG | - | chr1_4:73107710-73107729 | Msa0183990:intron | 30.0% |
| !! | TACATGTTTTAAACAGGGTT+TGG | - | chr1_4:73107823-73107842 | Msa0183990:intron | 30.0% |
| CGTGTTAGCATAGAAAATAA+AGG | - | chr1_4:73107956-73107975 | Msa0183990:intron | 30.0% | |
| TTTACATTTGTAGAACAACC+AGG | - | chr1_4:73108474-73108493 | Msa0183990:intron | 30.0% | |
| TCACACTAGTTATATATTCC+TGG | + | chr1_4:73108495-73108514 | None:intergenic | 30.0% | |
| TTGCTCATATATTTAGTGGT+AGG | - | chr1_4:73108522-73108541 | Msa0183990:intron | 30.0% | |
| TGCTCATATATTTAGTGGTA+GGG | - | chr1_4:73108523-73108542 | Msa0183990:intron | 30.0% | |
| CATGTTACCACTTTAAACTT+TGG | - | chr1_4:73108579-73108598 | Msa0183990:intron | 30.0% | |
| ACACATTCCAAAGTTTAAAG+TGG | + | chr1_4:73108589-73108608 | None:intergenic | 30.0% | |
| ! | TTAATCGTGAATATTGACTG+TGG | - | chr1_4:73108618-73108637 | Msa0183990:intron | 30.0% |
| GGCACTTAATGAACTAAATA+GGG | + | chr1_4:73108689-73108708 | None:intergenic | 30.0% | |
| ! | CTATTCCATTTTCTATTGAC+TGG | - | chr1_4:73108813-73108832 | Msa0183990:intron | 30.0% |
| ATATGCCAGTCAATAGAAAA+TGG | + | chr1_4:73108821-73108840 | None:intergenic | 30.0% | |
| !!! | TATTTCTGGCAACTTTTTGT+TGG | - | chr1_4:73108838-73108857 | Msa0183990:intron | 30.0% |
| ATAAGAATTAGTTAGGAACC+TGG | + | chr1_4:73108959-73108978 | None:intergenic | 30.0% | |
| CTCGAAGATAAGAATTAGTT+AGG | + | chr1_4:73108966-73108985 | None:intergenic | 30.0% | |
| TAATTCTTATCTTCGAGAAG+AGG | - | chr1_4:73108969-73108988 | Msa0183990:CDS | 30.0% | |
| TGAGTCAACATAATGAAAAC+TGG | + | chr1_4:73109053-73109072 | None:intergenic | 30.0% | |
| ! | GGTCAAATGTTATTTAGGAA+AGG | - | chr1_4:73109119-73109138 | Msa0183990:intron | 30.0% |
| CCAAAGATATAATCAGCAAT+TGG | + | chr1_4:73109225-73109244 | None:intergenic | 30.0% | |
| ! | CCAATTGCTGATTATATCTT+TGG | - | chr1_4:73109222-73109241 | Msa0183990:intron | 30.0% |
| CCATATAGCAAAACAAACAT+TGG | + | chr1_4:73109298-73109317 | None:intergenic | 30.0% | |
| !!! | CCAATGTTTGTTTTGCTATA+TGG | - | chr1_4:73109295-73109314 | Msa0183990:intron | 30.0% |
| !! | ATTTAAGTGGTACTGATATC+TGG | - | chr1_4:73109379-73109398 | Msa0183990:intron | 30.0% |
| CTAAATTTCTTAGGTTACGA+TGG | - | chr1_4:73109514-73109533 | Msa0183990:intron | 30.0% | |
| GTCTTGTAAACAATGTCTTA+TGG | - | chr1_4:73109613-73109632 | Msa0183990:intron | 30.0% | |
| ACAATGTCTTATGGCTATAA+AGG | - | chr1_4:73109622-73109641 | Msa0183990:intron | 30.0% | |
| !!! | TTTTGAAGCATCAGTGATTT+TGG | - | chr1_4:73109719-73109738 | Msa0183990:intron | 30.0% |
| !!! | GTGTTTTTCTAAAATCCCTT+TGG | - | chr1_4:73109775-73109794 | Msa0183990:intron | 30.0% |
| CAGATTGTGTAAAACAGAAA+TGG | + | chr1_4:73110009-73110028 | None:intergenic | 30.0% | |
| ACAATATGAGAAGGCTTAAA+TGG | - | chr1_4:73110199-73110218 | Msa0183990:CDS | 30.0% | |
| ATGTTACCAACAGTTTCGAA+AGG | - | chr1_4:73106145-73106164 | Msa0183990:three_prime_UTR | 35.0% | |
| TAAGGAAGAAGAGTGGAATT+GGG | + | chr1_4:73106208-73106227 | None:intergenic | 35.0% | |
| GAAGAAATGAAGAGATCAGT+TGG | + | chr1_4:73106254-73106273 | None:intergenic | 35.0% | |
| TTTGCAATGAAATGGGGAAT+CGG | + | chr1_4:73106314-73106333 | None:intergenic | 35.0% | |
| ACAGCATTTGCAATGAAATG+GGG | + | chr1_4:73106320-73106339 | None:intergenic | 35.0% | |
| CAACAGCATTTGCAATGAAA+TGG | + | chr1_4:73106322-73106341 | None:intergenic | 35.0% | |
| TTGCAAATGCTGTTGAATTG+TGG | - | chr1_4:73106327-73106346 | Msa0183990:CDS | 35.0% | |
| GGCGCAATATTATAAACCAT+AGG | - | chr1_4:73106348-73106367 | Msa0183990:intron | 35.0% | |
| !!! | TCTACTTTTTTGTGTGAACC+GGG | - | chr1_4:73106724-73106743 | Msa0183990:intron | 35.0% |
| ! | TGCTTTTCCTTCATTTTCCA+CGG | + | chr1_4:73107141-73107160 | None:intergenic | 35.0% |
| ! | GAAGGAAAAGCATAATGTAG+CGG | - | chr1_4:73107149-73107168 | Msa0183990:CDS | 35.0% |
| TTAGGAAAATTACCGTTAGC+TGG | - | chr1_4:73107192-73107211 | Msa0183990:intron | 35.0% | |
| TTCATTGTAGTGGCAACAAA+TGG | - | chr1_4:73107403-73107422 | Msa0183990:intron | 35.0% | |
| AAACACATACACAACCAAAG+GGG | + | chr1_4:73107661-73107680 | None:intergenic | 35.0% | |
| CAAACACATACACAACCAAA+GGG | + | chr1_4:73107662-73107681 | None:intergenic | 35.0% | |
| ATACAGATATTCGTGAGAAG+TGG | + | chr1_4:73107787-73107806 | None:intergenic | 35.0% | |
| TAATTATCCACAGTGCACTA+TGG | - | chr1_4:73107914-73107933 | Msa0183990:intron | 35.0% | |
| TGCATAAATTGGAGGAAACA+CGG | - | chr1_4:73108009-73108028 | Msa0183990:intron | 35.0% | |
| ! | TCTTTTGATAAGGAGCTCTA+AGG | - | chr1_4:73108125-73108144 | Msa0183990:intron | 35.0% |
| ! | CTAAGGAACTTTGGCTTATT+AGG | - | chr1_4:73108142-73108161 | Msa0183990:intron | 35.0% |
| ! | CGTAAGTTTCTCATGCATTT+TGG | - | chr1_4:73108404-73108423 | Msa0183990:intron | 35.0% |
| ! | AAGTTTCTCATGCATTTTGG+CGG | - | chr1_4:73108407-73108426 | Msa0183990:intron | 35.0% |
| TAGCTAGTCATCTAATCATG+AGG | + | chr1_4:73108441-73108460 | None:intergenic | 35.0% | |
| GGGCACTTAATGAACTAAAT+AGG | + | chr1_4:73108690-73108709 | None:intergenic | 35.0% | |
| GGTCATACCTGAAAATGAAT+GGG | + | chr1_4:73108752-73108771 | None:intergenic | 35.0% | |
| TGGTCATACCTGAAAATGAA+TGG | + | chr1_4:73108753-73108772 | None:intergenic | 35.0% | |
| ! | AGAAGACAACAAAAAGTGCA+TGG | + | chr1_4:73108785-73108804 | None:intergenic | 35.0% |
| ! | TCTATTGACTGGCATATTTC+TGG | - | chr1_4:73108824-73108843 | Msa0183990:intron | 35.0% |
| ! | TTTTGACCCATATATTCTCC+AGG | - | chr1_4:73108938-73108957 | Msa0183990:intron | 35.0% |
| TAGGAACCTGGAGAATATAT+GGG | + | chr1_4:73108947-73108966 | None:intergenic | 35.0% | |
| TTAGGAACCTGGAGAATATA+TGG | + | chr1_4:73108948-73108967 | None:intergenic | 35.0% | |
| TGTTCAACCACATAACTGTT+TGG | + | chr1_4:73108997-73109016 | None:intergenic | 35.0% | |
| !!! | TATCTTTGGTTTTCCATGGA+AGG | - | chr1_4:73109236-73109255 | Msa0183990:intron | 35.0% |
| ! | TTTTCTATCTCCTCTATTGG+TGG | - | chr1_4:73109423-73109442 | Msa0183990:intron | 35.0% |
| TTTCTTAGGTTACGATGGTA+AGG | - | chr1_4:73109519-73109538 | Msa0183990:intron | 35.0% | |
| TTGTTAGTGTGTTGTATCCT+TGG | - | chr1_4:73109579-73109598 | Msa0183990:intron | 35.0% | |
| TGTTAGTGTGTTGTATCCTT+GGG | - | chr1_4:73109580-73109599 | Msa0183990:intron | 35.0% | |
| TGTCTTATGGCTATAAAGGA+TGG | - | chr1_4:73109626-73109645 | Msa0183990:intron | 35.0% | |
| GTCTTATGGCTATAAAGGAT+GGG | - | chr1_4:73109627-73109646 | Msa0183990:intron | 35.0% | |
| ! | AAGGATGGGTTTCGTTATTT+AGG | - | chr1_4:73109641-73109660 | Msa0183990:intron | 35.0% |
| !! | TTTGCACCGAGTATTGTTTT+TGG | - | chr1_4:73109753-73109772 | Msa0183990:intron | 35.0% |
| AGAACGCATGTTAAAGTTCT+TGG | - | chr1_4:73109802-73109821 | Msa0183990:intron | 35.0% | |
| !! | ATGTATAGCTCTGAATTGGA+AGG | - | chr1_4:73109843-73109862 | Msa0183990:intron | 35.0% |
| GACTAATTGATTGACATCTG+TGG | - | chr1_4:73109885-73109904 | Msa0183990:intron | 35.0% | |
| AATTGGATACAGGAAAAAGG+TGG | + | chr1_4:73109938-73109957 | None:intergenic | 35.0% | |
| ! | ACCTTTTTCCTGTATCCAAT+TGG | - | chr1_4:73109937-73109956 | Msa0183990:intron | 35.0% |
| ACCAATTGGATACAGGAAAA+AGG | + | chr1_4:73109941-73109960 | None:intergenic | 35.0% | |
| TTACTACACCAATTGGATAC+AGG | + | chr1_4:73109948-73109967 | None:intergenic | 35.0% | |
| AGGACAATTACTACACCAAT+TGG | + | chr1_4:73109955-73109974 | None:intergenic | 35.0% | |
| ! | CTTCGATTGATAGTAGTAGA+AGG | + | chr1_4:73110279-73110298 | None:intergenic | 35.0% |
| ! | AGAATATATCGATTGTTGGG+AGG | + | chr1_4:73110418-73110437 | None:intergenic | 35.0% |
| ACTCAGATCAGAGATGAACA+AGG | + | chr1_4:73105981-73106000 | None:intergenic | 40.0% | |
| GTAAGGAAGAAGAGTGGAAT+TGG | + | chr1_4:73106209-73106228 | None:intergenic | 40.0% | |
| ! | TTGATAATTCTGCGGAGGTA+AGG | + | chr1_4:73106226-73106245 | None:intergenic | 40.0% |
| TTACCTCCGCAGAATTATCA+AGG | - | chr1_4:73106225-73106244 | Msa0183990:three_prime_UTR | 40.0% | |
| ! | TGGGTACCTTGATAATTCTG+CGG | + | chr1_4:73106234-73106253 | None:intergenic | 40.0% |
| !! | TGGTGCTTTTCTGGGAATAA+TGG | - | chr1_4:73106583-73106602 | Msa0183990:intron | 40.0% |
| ATCTCTTCCAGTTTAACCAG+GGG | + | chr1_4:73106873-73106892 | None:intergenic | 40.0% | |
| GATCTCTTCCAGTTTAACCA+GGG | + | chr1_4:73106874-73106893 | None:intergenic | 40.0% | |
| ! | TTTTGAATGGTGTGTGTGTG+TGG | - | chr1_4:73107028-73107047 | Msa0183990:intron | 40.0% |
| ATAATAGTCTCATGCCCCAA+TGG | - | chr1_4:73107085-73107104 | Msa0183990:intron | 40.0% | |
| TTCTATTCCCTACACCATTG+GGG | + | chr1_4:73107102-73107121 | None:intergenic | 40.0% | |
| CTTCTATTCCCTACACCATT+GGG | + | chr1_4:73107103-73107122 | None:intergenic | 40.0% | |
| TCTTCTATTCCCTACACCAT+TGG | + | chr1_4:73107104-73107123 | None:intergenic | 40.0% | |
| TGAGATACCGTGGAAAATGA+AGG | - | chr1_4:73107131-73107150 | Msa0183990:CDS | 40.0% | |
| GTAAAACTGACACCAGCTAA+CGG | + | chr1_4:73107207-73107226 | None:intergenic | 40.0% | |
| ! | ATTGTTGTTGCATGAGGTCA+TGG | + | chr1_4:73107553-73107572 | None:intergenic | 40.0% |
| ! | CCTCATATTGTTGTTGCATG+AGG | + | chr1_4:73107559-73107578 | None:intergenic | 40.0% |
| CCTCATGCAACAACAATATG+AGG | - | chr1_4:73107556-73107575 | Msa0183990:intron | 40.0% | |
| TAAATGTACCACCAAACGCA+TGG | - | chr1_4:73107594-73107613 | Msa0183990:CDS | 40.0% | |
| CTCAACCAACCATCAGTTTA+TGG | + | chr1_4:73107620-73107639 | None:intergenic | 40.0% | |
| CCAAACACATACACAACCAA+AGG | + | chr1_4:73107663-73107682 | None:intergenic | 40.0% | |
| CCTTTGGTTGTGTATGTGTT+TGG | - | chr1_4:73107660-73107679 | Msa0183990:intron | 40.0% | |
| CTTGATATGGAACTGTGCAA+TGG | - | chr1_4:73107723-73107742 | Msa0183990:intron | 40.0% | |
| GGATAGAGGGGAATAATGAT+GGG | - | chr1_4:73108030-73108049 | Msa0183990:intron | 40.0% | |
| !! | TAAGGAGCTCTAAGGAACTT+TGG | - | chr1_4:73108133-73108152 | Msa0183990:intron | 40.0% |
| GCTTGCACATGAACTTTGTT+TGG | - | chr1_4:73108164-73108183 | Msa0183990:intron | 40.0% | |
| TGCAGATCACAACAAATGCA+GGG | + | chr1_4:73108345-73108364 | None:intergenic | 40.0% | |
| AAGTTGCAACAGCCAAAAGA+AGG | + | chr1_4:73108369-73108388 | None:intergenic | 40.0% | |
| !! | TCTTTTGGCTGTTGCAACTT+TGG | - | chr1_4:73108369-73108388 | Msa0183990:intron | 40.0% |
| TTAGTTCATTAAGTGCCCCT+AGG | - | chr1_4:73108692-73108711 | Msa0183990:intron | 40.0% | |
| TAGTTCATTAAGTGCCCCTA+GGG | - | chr1_4:73108693-73108712 | Msa0183990:intron | 40.0% | |
| TTCAGGTATGACCATAGTTC+TGG | - | chr1_4:73108759-73108778 | Msa0183990:intron | 40.0% | |
| TCAGAGCATGCACTACTATT+TGG | - | chr1_4:73109098-73109117 | Msa0183990:intron | 40.0% | |
| !!! | GGTACTGATATCTGGTCTTT+TGG | - | chr1_4:73109387-73109406 | Msa0183990:intron | 40.0% |
| GGGTTTCGTTATTTAGGTCT+TGG | - | chr1_4:73109647-73109666 | Msa0183990:intron | 40.0% | |
| ACATGCGTTCTCATTCCAAA+GGG | + | chr1_4:73109793-73109812 | None:intergenic | 40.0% | |
| AACATGCGTTCTCATTCCAA+AGG | + | chr1_4:73109794-73109813 | None:intergenic | 40.0% | |
| GCTGGAGTGATCATATTTGT+CGG | + | chr1_4:73110127-73110146 | None:intergenic | 40.0% | |
| !! | GACTGGTCAAAAGTTTTAGC+TGG | + | chr1_4:73110145-73110164 | None:intergenic | 40.0% |
| CATTACTTCAGAACCTCAAC+AGG | + | chr1_4:73110173-73110192 | None:intergenic | 40.0% | |
| !! | CTGTTGAGGTTCTGAAGTAA+TGG | - | chr1_4:73110171-73110190 | Msa0183990:intron | 40.0% |
| !! | TTGAGGTTCTGAAGTAATGG+AGG | - | chr1_4:73110174-73110193 | Msa0183990:intron | 40.0% |
| ATGGAGGCTACAATATGAGA+AGG | - | chr1_4:73110190-73110209 | Msa0183990:intron | 40.0% | |
| GATCGTTTCCGTAGCTGAAA+CGG | - | chr1_4:73106097-73106116 | Msa0183990:three_prime_UTR | 45.0% | |
| GATTCGATCCGTTTCAGCTA+CGG | + | chr1_4:73106108-73106127 | None:intergenic | 45.0% | |
| ! | GTACCTTGATAATTCTGCGG+AGG | + | chr1_4:73106231-73106250 | None:intergenic | 45.0% |
| GAGGGGTCAATCTAATCCTA+TGG | + | chr1_4:73106367-73106386 | None:intergenic | 45.0% | |
| AGTGCTCAAGTAATCACGAG+GGG | + | chr1_4:73106384-73106403 | None:intergenic | 45.0% | |
| CAGTGCTCAAGTAATCACGA+GGG | + | chr1_4:73106385-73106404 | None:intergenic | 45.0% | |
| ACAGTGCTCAAGTAATCACG+AGG | + | chr1_4:73106386-73106405 | None:intergenic | 45.0% | |
| CTGGAAGTGATCCATTGTGA+TGG | - | chr1_4:73106543-73106562 | Msa0183990:intron | 45.0% | |
| ! | TGGTAGGTATGGTGCTTTTC+TGG | - | chr1_4:73106574-73106593 | Msa0183990:intron | 45.0% |
| ! | GGTAGGTATGGTGCTTTTCT+GGG | - | chr1_4:73106575-73106594 | Msa0183990:intron | 45.0% |
| GTCTTAACAGTTGCGCACAA+AGG | + | chr1_4:73106753-73106772 | None:intergenic | 45.0% | |
| AGCTGTGTTAAATCCCTTGG+GGG | + | chr1_4:73106820-73106839 | None:intergenic | 45.0% | |
| CAGCTGTGTTAAATCCCTTG+GGG | + | chr1_4:73106821-73106840 | None:intergenic | 45.0% | |
| GCAGCTGTGTTAAATCCCTT+GGG | + | chr1_4:73106822-73106841 | None:intergenic | 45.0% | |
| TGCAGCTGTGTTAAATCCCT+TGG | + | chr1_4:73106823-73106842 | None:intergenic | 45.0% | |
| GGATCTCTTCCAGTTTAACC+AGG | + | chr1_4:73106875-73106894 | None:intergenic | 45.0% | |
| CCACATGGATGAGATGGTAA+GGG | + | chr1_4:73106896-73106915 | None:intergenic | 45.0% | |
| ACCACATGGATGAGATGGTA+AGG | + | chr1_4:73106897-73106916 | None:intergenic | 45.0% | |
| ACAAGACCACATGGATGAGA+TGG | + | chr1_4:73106902-73106921 | None:intergenic | 45.0% | |
| ATAGACTGCACAAGACCACA+TGG | + | chr1_4:73106911-73106930 | None:intergenic | 45.0% | |
| ATGGTGTGCTTCGTATGGTA+CGG | - | chr1_4:73107054-73107073 | Msa0183990:intron | 45.0% | |
| ! | AGAGAAAGTGTGAGATACCG+TGG | - | chr1_4:73107121-73107140 | Msa0183990:intron | 45.0% |
| TCAGTTTATGGCCATGCGTT+TGG | + | chr1_4:73107608-73107627 | None:intergenic | 45.0% | |
| AACGCATGGCCATAAACTGA+TGG | - | chr1_4:73107608-73107627 | Msa0183990:CDS | 45.0% | |
| CATGGCCATAAACTGATGGT+TGG | - | chr1_4:73107612-73107631 | Msa0183990:CDS | 45.0% | |
| ! | TTGGTCAGTGACGTTTGTTG+AGG | - | chr1_4:73107842-73107861 | Msa0183990:intron | 45.0% |
| ! | TGGTCAGTGACGTTTGTTGA+GGG | - | chr1_4:73107843-73107862 | Msa0183990:intron | 45.0% |
| GTAACTACCATAGTGCACTG+TGG | + | chr1_4:73107924-73107943 | None:intergenic | 45.0% | |
| ATTGGAGGAAACACGGATAG+AGG | - | chr1_4:73108016-73108035 | Msa0183990:intron | 45.0% | |
| TTGGAGGAAACACGGATAGA+GGG | - | chr1_4:73108017-73108036 | Msa0183990:intron | 45.0% | |
| CGGATAGAGGGGAATAATGA+TGG | - | chr1_4:73108029-73108048 | Msa0183990:intron | 45.0% | |
| CTGCAGATCACAACAAATGC+AGG | + | chr1_4:73108346-73108365 | None:intergenic | 45.0% | |
| ! | TGTGATCTGCAGCCTTCTTT+TGG | - | chr1_4:73108354-73108373 | Msa0183990:intron | 45.0% |
| AGTTCATTAAGTGCCCCTAG+GGG | - | chr1_4:73108694-73108713 | Msa0183990:intron | 45.0% | |
| AATGTTAGCAGATGCCCCTA+GGG | + | chr1_4:73108711-73108730 | None:intergenic | 45.0% | |
| AAATGTTAGCAGATGCCCCT+AGG | + | chr1_4:73108712-73108731 | None:intergenic | 45.0% | |
| AAAGTGCATGGCCAGAACTA+TGG | + | chr1_4:73108773-73108792 | None:intergenic | 45.0% | |
| ! | CTGGCAACTTTTTGTTGGTG+AGG | - | chr1_4:73108843-73108862 | Msa0183990:intron | 45.0% |
| AGAGGCTCCAAACAGTTATG+TGG | - | chr1_4:73108987-73109006 | Msa0183990:CDS | 45.0% | |
| TGGTTGAACAGCGTGTTGAA+TGG | - | chr1_4:73109007-73109026 | Msa0183990:intron | 45.0% | |
| CAAACGCATACATCCTTCCA+TGG | + | chr1_4:73109252-73109271 | None:intergenic | 45.0% | |
| AAACCATGAGCCACCAATAG+AGG | + | chr1_4:73109436-73109455 | None:intergenic | 45.0% | |
| !! | GGTTGTAGTTCTGCCCTTTT+TGG | - | chr1_4:73109906-73109925 | Msa0183990:intron | 45.0% |
| !! | TAGTTCTGCCCTTTTTGGAG+AGG | - | chr1_4:73109911-73109930 | Msa0183990:intron | 45.0% |
| AAGGTGGTCCTCTCCAAAAA+GGG | + | chr1_4:73109922-73109941 | None:intergenic | 45.0% | |
| AAAGGTGGTCCTCTCCAAAA+AGG | + | chr1_4:73109923-73109942 | None:intergenic | 45.0% | |
| TTCAGAACCTCAACAGGACA+CGG | + | chr1_4:73110167-73110186 | None:intergenic | 45.0% | |
| CCTACAATGATGCATTTCCG+GGG | + | chr1_4:73110256-73110275 | None:intergenic | 45.0% | |
| GCCTACAATGATGCATTTCC+GGG | + | chr1_4:73110257-73110276 | None:intergenic | 45.0% | |
| GGCCTACAATGATGCATTTC+CGG | + | chr1_4:73110258-73110277 | None:intergenic | 45.0% | |
| TCTGATCTGAGTCCGAAGCA+AGG | - | chr1_4:73105989-73106008 | Msa0183990:three_prime_UTR | 50.0% | |
| GAGCGTCCTTTCGAAACTGT+TGG | + | chr1_4:73106154-73106173 | None:intergenic | 50.0% | |
| AAGAGTGGAATTGGGTCGAG+AGG | + | chr1_4:73106200-73106219 | None:intergenic | 50.0% | |
| CCATGCTCTCTCCATCACAA+TGG | + | chr1_4:73106557-73106576 | None:intergenic | 50.0% | |
| ! | CCATTGTGATGGAGAGAGCA+TGG | - | chr1_4:73106554-73106573 | Msa0183990:intron | 50.0% |
| ! | TGTGATGGAGAGAGCATGGT+AGG | - | chr1_4:73106558-73106577 | Msa0183990:intron | 50.0% |
| ! | TGGAGAGAGCATGGTAGGTA+TGG | - | chr1_4:73106563-73106582 | Msa0183990:intron | 50.0% |
| AGTTGCGCACAAAGGTTACC+CGG | + | chr1_4:73106745-73106764 | None:intergenic | 50.0% | |
| ! | TTAAGACTAGTCCCTCGAGC+CGG | - | chr1_4:73106766-73106785 | Msa0183990:intron | 50.0% |
| GTGACAAAGTTCTCCCCCAA+GGG | - | chr1_4:73106804-73106823 | Msa0183990:intron | 50.0% | |
| TTAACACAGCTGCATGCCCA+TGG | - | chr1_4:73106829-73106848 | Msa0183990:intron | 50.0% | |
| CTGGGTTTGAATCCAGCCAT+GGG | + | chr1_4:73106848-73106867 | None:intergenic | 50.0% | |
| CCCTTACCATCTCATCCATG+TGG | - | chr1_4:73106893-73106912 | Msa0183990:intron | 50.0% | |
| TGAATGGTGTGTGTGTGTGG+TGG | - | chr1_4:73107031-73107050 | Msa0183990:intron | 50.0% | |
| TGGTGTGCTTCGTATGGTAC+GGG | - | chr1_4:73107055-73107074 | Msa0183990:intron | 50.0% | |
| TCTCATGCCCCAATGGTGTA+GGG | - | chr1_4:73107092-73107111 | Msa0183990:intron | 50.0% | |
| GTTTATGGCCATGCGTTTGG+TGG | + | chr1_4:73107605-73107624 | None:intergenic | 50.0% | |
| ACACAACCAAAGGGGTGACT+GGG | + | chr1_4:73107653-73107672 | None:intergenic | 50.0% | |
| TACACAACCAAAGGGGTGAC+TGG | + | chr1_4:73107654-73107673 | None:intergenic | 50.0% | |
| ! | GGTCAGTGACGTTTGTTGAG+GGG | - | chr1_4:73107844-73107863 | Msa0183990:intron | 50.0% |
| ! | GTCAGTGACGTTTGTTGAGG+GGG | - | chr1_4:73107845-73107864 | Msa0183990:intron | 50.0% |
| TGGAGGAAACACGGATAGAG+GGG | - | chr1_4:73108018-73108037 | Msa0183990:intron | 50.0% | |
| !! | ATCGCGTGCCCATTGATTCT+TGG | + | chr1_4:73108320-73108339 | None:intergenic | 50.0% |
| !! | CTCATGCATTTTGGCGGCAA+TGG | - | chr1_4:73108413-73108432 | Msa0183990:intron | 50.0% |
| ATGTTAGCAGATGCCCCTAG+GGG | + | chr1_4:73108710-73108729 | None:intergenic | 50.0% | |
| ! | TCTCCTCTATTGGTGGCTCA+TGG | - | chr1_4:73109430-73109449 | Msa0183990:intron | 50.0% |
| GTTTGACGAACGCAATACCC+CGG | - | chr1_4:73110236-73110255 | Msa0183990:CDS | 50.0% | |
| CCCCGGAAATGCATCATTGT+AGG | - | chr1_4:73110253-73110272 | Msa0183990:CDS | 50.0% | |
| CTGAGTCCGAAGCAAGGTAC+CGG | - | chr1_4:73105995-73106014 | Msa0183990:three_prime_UTR | 55.0% | |
| GGGTCGAGAGGAAGATGAAG+AGG | + | chr1_4:73106188-73106207 | None:intergenic | 55.0% | |
| GCGGAGGTAAGGAAGAAGAG+TGG | + | chr1_4:73106215-73106234 | None:intergenic | 55.0% | |
| ! | TAAGACTAGTCCCTCGAGCC+GGG | - | chr1_4:73106767-73106786 | Msa0183990:intron | 55.0% |
| GGGAGAACTTTGTCACCCGT+TGG | + | chr1_4:73106800-73106819 | None:intergenic | 55.0% | |
| GGTGACAAAGTTCTCCCCCA+AGG | - | chr1_4:73106803-73106822 | Msa0183990:intron | 55.0% | |
| CCTGGGTTTGAATCCAGCCA+TGG | + | chr1_4:73106849-73106868 | None:intergenic | 55.0% | |
| CCATGGCTGGATTCAAACCC+AGG | - | chr1_4:73106846-73106865 | Msa0183990:intron | 55.0% | |
| CCAGTTTAACCAGGGGTCCT+GGG | + | chr1_4:73106866-73106885 | None:intergenic | 55.0% | |
| TCCAGTTTAACCAGGGGTCC+TGG | + | chr1_4:73106867-73106886 | None:intergenic | 55.0% | |
| ! | TGGTGTGTGTGTGTGGTGGA+TGG | - | chr1_4:73107035-73107054 | Msa0183990:intron | 55.0% |
| GGTGGATGGTGTGCTTCGTA+TGG | - | chr1_4:73107049-73107068 | Msa0183990:intron | 55.0% | |
| GTCTCATGCCCCAATGGTGT+AGG | - | chr1_4:73107091-73107110 | Msa0183990:intron | 55.0% | |
| TACTCACCCAGTCACCCCTT+TGG | - | chr1_4:73107644-73107663 | Msa0183990:CDS | 55.0% | |
| CAAGACAGCAGACACACCCA+AGG | + | chr1_4:73109599-73109618 | None:intergenic | 55.0% | |
| AACCTCAACAGGACACGGAC+TGG | + | chr1_4:73110162-73110181 | None:intergenic | 55.0% | |
| !! | TCCGAAGCAAGGTACCGGAG+AGG | - | chr1_4:73106000-73106019 | Msa0183990:three_prime_UTR | 60.0% |
| CCCTCTCCGGTACCTTGCTT+CGG | + | chr1_4:73106004-73106023 | None:intergenic | 60.0% | |
| !! | CCGAAGCAAGGTACCGGAGA+GGG | - | chr1_4:73106001-73106020 | Msa0183990:three_prime_UTR | 60.0% |
| !! | CGAAGCAAGGTACCGGAGAG+GGG | - | chr1_4:73106002-73106021 | Msa0183990:three_prime_UTR | 60.0% |
| ACCGGAGAGGGGAGAGAGAA+AGG | - | chr1_4:73106013-73106032 | Msa0183990:three_prime_UTR | 60.0% | |
| CCCTTTCTCTCTCCCCTCTC+CGG | + | chr1_4:73106017-73106036 | None:intergenic | 60.0% | |
| CCGGAGAGGGGAGAGAGAAA+GGG | - | chr1_4:73106014-73106033 | Msa0183990:three_prime_UTR | 60.0% | |
| TCACCCGTTGGAGTCCTACC+CGG | + | chr1_4:73106788-73106807 | None:intergenic | 60.0% | |
| GGATTCAAACCCAGGACCCC+TGG | - | chr1_4:73106854-73106873 | Msa0183990:intron | 60.0% | |
| CCCAGGACCCCTGGTTAAAC+TGG | - | chr1_4:73106863-73106882 | Msa0183990:intron | 60.0% | |
| GACCAGTCCGTGTCCTGTTG+AGG | - | chr1_4:73110157-73110176 | Msa0183990:intron | 60.0% | |
| ACTAGTCCCTCGAGCCGGGT+AGG | - | chr1_4:73106771-73106790 | Msa0183990:intron | 65.0% | |
| ! | TGGAGTCCTACCCGGCTCGA+GGG | + | chr1_4:73106780-73106799 | None:intergenic | 65.0% |
| ! | TTGGAGTCCTACCCGGCTCG+AGG | + | chr1_4:73106781-73106800 | None:intergenic | 65.0% |
| CGAGCCGGGTAGGACTCCAA+CGG | - | chr1_4:73106781-73106800 | Msa0183990:intron | 65.0% | |
| GAGCCGGGTAGGACTCCAAC+GGG | - | chr1_4:73106782-73106801 | Msa0183990:intron | 65.0% | |
| CACAGCTGCATGCCCATGGC+TGG | - | chr1_4:73106833-73106852 | Msa0183990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73105946 | 73110492 | 73105946 | ID=Msa0183990;Name=Msa0183990 |
| chr1_4 | mRNA | 73105946 | 73110492 | 73105946 | ID=Msa0183990-mRNA-1;Parent=Msa0183990;Name=Msa0183990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=199|1|1|1|0.44|0.6|10|356|256 |
| chr1_4 | exon | 73105946 | 73106366 | 73105946 | ID=Msa0183990-mRNA-1:exon:24836;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73106453 | 73106524 | 73106453 | ID=Msa0183990-mRNA-1:exon:24835;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73106903 | 73107025 | 73106903 | ID=Msa0183990-mRNA-1:exon:24834;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73107122 | 73107180 | 73107122 | ID=Msa0183990-mRNA-1:exon:24833;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73107410 | 73107478 | 73107410 | ID=Msa0183990-mRNA-1:exon:24832;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73107579 | 73107674 | 73107579 | ID=Msa0183990-mRNA-1:exon:24831;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73108034 | 73108124 | 73108034 | ID=Msa0183990-mRNA-1:exon:24830;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73108661 | 73108686 | 73108661 | ID=Msa0183990-mRNA-1:exon:24829;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73108958 | 73109025 | 73108958 | ID=Msa0183990-mRNA-1:exon:24828;Parent=Msa0183990-mRNA-1 |
| chr1_4 | exon | 73110192 | 73110492 | 73110192 | ID=Msa0183990-mRNA-1:exon:24827;Parent=Msa0183990-mRNA-1 |
| chr1_4 | five_prime_UTR | 73110294 | 73110492 | 73110294 | ID=Msa0183990-mRNA-1:five_prime_utr;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73110192 | 73110293 | 73110192 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73108958 | 73109025 | 73108958 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73108661 | 73108686 | 73108661 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73108034 | 73108124 | 73108034 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73107579 | 73107674 | 73107579 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73107410 | 73107478 | 73107410 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73107122 | 73107180 | 73107122 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73106903 | 73107025 | 73106903 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73106453 | 73106524 | 73106453 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | CDS | 73106302 | 73106366 | 73106302 | ID=Msa0183990-mRNA-1:cds;Parent=Msa0183990-mRNA-1 |
| chr1_4 | three_prime_UTR | 73105946 | 73106301 | 73105946 | ID=Msa0183990-mRNA-1:three_prime_utr;Parent=Msa0183990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
