AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357530 MtrunA17_Chr3g0095791 94.624 279 14 1 2 279 413 691 0.0 537
Msa0357530 MtrunA17_Chr2g0307191 79.853 273 55 0 7 279 420 692 1.59e-161 465
Msa0357530 MtrunA17_Chr2g0298581 75.824 273 66 0 7 279 420 692 1.54e-158 457
Msa0357530 MtrunA17_Chr3g0077511 67.518 274 87 1 8 279 421 694 3.66e-140 410
Msa0357530 MtrunA17_Chr1g0186381 35.897 273 170 3 8 277 441 711 3.97e-60 203
Msa0357530 MtrunA17_Chr4g0046401 36.397 272 172 1 7 277 441 712 9.61e-56 191
Msa0357530 MtrunA17_Chr2g0307221 73.333 75 20 0 51 125 1 75 8.58e-36 123
Msa0357530 MtrunA17_Chr3g0102531 28.938 273 191 2 8 277 434 706 2.25e-35 134
Msa0357530 MtrunA17_Chr3g0102541 28.777 278 191 3 8 279 435 711 2.09e-34 131
Msa0357530 MtrunA17_Chr3g0102551 27.106 273 194 2 8 275 440 712 1.06e-33 129
Msa0357530 MtrunA17_Chr8g0364641 28.214 280 185 6 8 278 668 940 1.64e-26 108
Msa0357530 MtrunA17_Chr2g0296991 25.818 275 195 4 8 278 734 1003 5.06e-26 107
Msa0357530 MtrunA17_Chr4g0073711 26.449 276 193 4 8 278 727 997 1.21e-25 106
Msa0357530 MtrunA17_Chr8g0383701 26.545 275 193 5 8 278 786 1055 1.88e-25 105
Msa0357530 MtrunA17_Chr3g0088821 26.182 275 195 5 8 278 767 1037 1.44e-24 103
Msa0357530 MtrunA17_Chr8g0352231 26.715 277 191 6 8 278 767 1037 1.74e-24 103
Msa0357530 MtrunA17_Chr2g0322331 27.037 270 189 7 8 271 81 348 1.78e-24 101
Msa0357530 MtrunA17_Chr8g0379241 26.182 275 193 4 8 277 678 947 6.88e-23 98.2
Msa0357530 MtrunA17_Chr7g0267731 24.727 275 199 5 8 278 675 945 1.19e-22 97.4
Msa0357530 MtrunA17_Chr1g0183381 25.091 275 196 5 8 278 595 863 3.13e-22 96.3
Msa0357530 MtrunA17_Chr2g0284211 25.362 276 196 4 8 278 666 936 4.01e-22 95.9
Msa0357530 MtrunA17_Chr3g0137951 25.448 279 192 6 8 278 775 1045 2.23e-21 94.0
Msa0357530 MtrunA17_Chr3g0078671 22.776 281 200 5 8 278 735 1008 1.12e-20 91.7
Msa0357530 MtrunA17_Chr2g0322351 24.815 270 185 9 8 271 447 704 2.04e-20 90.9
Msa0357530 MtrunA17_Chr2g0322361 25.283 265 189 6 18 276 461 722 6.66e-20 89.4
Msa0357530 MtrunA17_Chr1g0201731 26.182 275 194 4 8 278 787 1056 1.01e-19 89.0
Msa0357530 MtrunA17_Chr2g0297351 26.389 288 180 9 7 278 715 986 1.96e-19 88.2
Msa0357530 MtrunA17_Chr2g0322371 24.000 275 200 6 8 276 441 712 7.63e-19 86.3
Msa0357530 MtrunA17_Chr1g0165421 24.453 274 201 4 7 277 822 1092 3.92e-18 84.3
Msa0357530 MtrunA17_Chr5g0410641 22.426 272 205 5 7 275 812 1080 2.87e-17 81.6
Msa0357530 MtrunA17_Chr1g0165411 23.810 273 202 4 8 277 795 1064 7.16e-17 80.5
Msa0357530 MtrunA17_Chr4g0025201 22.794 272 198 7 8 271 443 710 5.30e-16 77.8
Msa0357530 MtrunA17_Chr4g0039801 23.443 273 199 5 8 275 834 1101 5.51e-16 78.2
Msa0357530 MtrunA17_Chr7g0269741 22.222 279 202 5 8 278 861 1132 9.26e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357530 AT4G24010.1 34.545 275 175 4 7 279 435 706 4.02e-51 179
Msa0357530 AT4G24000.2 30.970 268 181 3 7 272 233 498 1.01e-47 166
Msa0357530 AT4G24000.1 30.970 268 181 3 7 272 425 690 1.52e-46 166
Msa0357530 AT4G23990.2 31.636 275 181 4 3 272 233 505 9.99e-44 156
Msa0357530 AT4G23990.1 31.636 275 181 4 3 272 447 719 1.22e-42 155
Msa0357530 AT1G55850.1 28.205 273 193 2 8 277 432 704 1.33e-35 135
Msa0357530 AT5G17420.1 28.623 276 187 5 8 278 715 985 4.79e-29 116
Msa0357530 AT4G18780.1 26.812 276 192 4 8 278 672 942 9.71e-25 103
Msa0357530 AT5G05170.1 25.806 279 191 6 8 278 754 1024 1.11e-24 103
Msa0357530 AT4G32410.1 26.165 279 190 6 8 278 769 1039 3.78e-24 102
Msa0357530 AT5G44030.3 26.449 276 194 7 8 278 458 729 5.80e-23 99.0
Msa0357530 AT5G09870.1 24.199 281 192 6 8 278 759 1028 1.24e-22 97.8
Msa0357530 AT5G44030.1 26.449 276 194 7 8 278 737 1008 1.31e-22 97.8
Msa0357530 AT5G44030.2 26.449 276 194 7 8 278 766 1037 1.32e-22 97.8
Msa0357530 AT2G21770.1 24.199 281 192 6 8 278 777 1046 1.36e-22 97.8
Msa0357530 AT2G25540.1 24.014 279 196 6 8 278 749 1019 1.59e-21 94.7
Msa0357530 AT5G64740.1 23.488 281 194 6 8 278 774 1043 4.61e-21 93.6
Msa0357530 AT4G39350.1 24.643 280 192 5 8 278 773 1042 1.47e-20 92.0
Msa0357530 AT3G03050.1 21.324 272 208 4 7 275 836 1104 9.43e-18 83.6
Msa0357530 AT2G32530.1 27.092 251 160 7 9 240 451 697 1.04e-16 80.5
Msa0357530 AT4G38190.1 22.993 274 205 4 7 277 797 1067 2.82e-16 79.3
Msa0357530 AT2G33100.2 23.636 275 204 5 7 278 729 1000 1.69e-15 77.0
Msa0357530 AT2G33100.1 23.636 275 204 5 7 278 729 1000 1.69e-15 77.0
Msa0357530 AT2G32540.1 24.291 247 167 6 8 238 450 692 5.71e-15 75.1
Msa0357530 AT2G32610.1 26.718 262 150 8 7 240 450 697 1.53e-13 70.9
Msa0357530 AT5G16910.1 21.091 275 211 4 7 278 836 1107 2.14e-13 70.9
Msa0357530 AT4G15290.1 25.600 250 165 7 8 241 449 693 1.32e-12 68.2
Msa0357530 AT1G32180.1 23.134 268 202 3 8 272 672 938 1.92e-12 67.8
Msa0357530 AT1G32180.2 23.134 268 202 3 8 272 672 938 1.92e-12 67.8
Msa0357530 AT1G02730.1 21.505 279 204 5 8 278 873 1144 4.09e-12 67.0

Find 60 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAACATTGTTTGCTTCTT+TGG 0.132316 3_1:-40848729 Msa0357530:CDS
TTTGCTTCTTTGGTGGTTTA+TGG 0.157159 3_1:-40848719 Msa0357530:CDS
TTGTTCATCCCACCAAATTC+TGG 0.226805 3_1:+40848950 None:intergenic
CTTATAATCCCCTCAATAAT+AGG 0.283744 3_1:+40848618 None:intergenic
ACTATTGCCTACACACTATA+TGG 0.309599 3_1:-40849896 Msa0357530:CDS
AAAGGTTAGACAATGAATAA+TGG 0.332845 3_1:+40849946 None:intergenic
GTGTGTAGGCAATAGTATAT+TGG 0.358637 3_1:+40849903 None:intergenic
AAACTTGAGAGTACCGTTAC+TGG 0.362985 3_1:-40850151 Msa0357530:CDS
AATATAGCCCATTCACTTAC+GGG 0.364012 3_1:-40849982 Msa0357530:CDS
GTGGTGGCTCCTCCAGAATT+TGG 0.369642 3_1:-40848962 Msa0357530:CDS
TGAAGGTGCAACATTGTTCA+TGG 0.370739 3_1:-40848775 Msa0357530:CDS
AAGGTTAGACAATGAATAAT+GGG 0.392893 3_1:+40849947 None:intergenic
AGTTTGATTGTAAAATCAAT+TGG 0.395815 3_1:-40848924 Msa0357530:CDS
TGTGTAGGCAATAGTATATT+GGG 0.407784 3_1:+40849904 None:intergenic
AAATATAGCCCATTCACTTA+CGG 0.428766 3_1:-40849983 Msa0357530:CDS
TCTAAGTTATCCTATTATTG+AGG 0.444182 3_1:-40848628 Msa0357530:CDS
CCTCAGATTTGCTTCTTGAA+AGG 0.449878 3_1:-40849866 Msa0357530:CDS
ATTATGAGCAACACAATCAA+TGG 0.451362 3_1:+40848750 None:intergenic
ACATCTGAACTTCTCTTGCT+TGG 0.451840 3_1:-40850013 Msa0357530:CDS
ACCTCCATCCTCTGCAATGA+AGG 0.452138 3_1:+40850122 None:intergenic
AACATTGTTTGCTTCTTTGG+TGG 0.455728 3_1:-40848726 Msa0357530:CDS
CTAAGTTATCCTATTATTGA+GGG 0.461749 3_1:-40848627 Msa0357530:CDS
CTTGAAATCCCGTAAGTGAA+TGG 0.463902 3_1:+40849974 None:intergenic
TTGAAATCCCGTAAGTGAAT+GGG 0.480525 3_1:+40849975 None:intergenic
TAAGTATGAAACGCAAGGTT+GGG 0.483268 3_1:-40848599 Msa0357530:CDS
TAAGGTAAAGCAATATGAGC+AGG 0.488142 3_1:-40848811 Msa0357530:CDS
ACCTCCTTCATTGCAGAGGA+TGG 0.492040 3_1:-40850126 Msa0357530:CDS
GATTGCTTCAGTTGGTAAAG+TGG 0.503160 3_1:-40850036 Msa0357530:CDS
AATATAATGTTGAATTTGAG+TGG 0.511523 3_1:+40848998 None:intergenic
AGGAATTTCTGTATTTCCAA+AGG 0.511930 3_1:-40849846 Msa0357530:intron
CAAAGCAGTTGACAAAGATA+AGG 0.514880 3_1:-40848829 Msa0357530:CDS
TCAAATTCAACATTATATTG+AGG 0.524787 3_1:-40848994 Msa0357530:CDS
TGTGGTTGTGAAGTAGCAAA+AGG 0.531218 3_1:+40849928 None:intergenic
AAAATGGTTTGGGTTGAACA+AGG 0.531329 3_1:-40848871 Msa0357530:CDS
GGCAATAGTATATTGGGTTG+TGG 0.531752 3_1:+40849910 None:intergenic
GTGGCTCCTCCAGAATTTGG+TGG 0.535117 3_1:-40848959 Msa0357530:CDS
CAATCCCTCTTTCATGTCAG+TGG 0.552279 3_1:+40850054 None:intergenic
TGTTACAGGTTACAGAACCT+TGG 0.553078 3_1:-40849049 Msa0357530:intron
ATAAGTATGAAACGCAAGGT+TGG 0.556954 3_1:-40848600 Msa0357530:CDS
AAATGGTTTGGGTTGAACAA+GGG 0.557787 3_1:-40848870 Msa0357530:CDS
ATTGAGGTAATTTCAAGTGG+TGG 0.566111 3_1:-40848978 Msa0357530:CDS
TGCACCCACTGACATGAAAG+AGG 0.566701 3_1:-40850059 Msa0357530:CDS
TATATTGAGGTAATTTCAAG+TGG 0.585743 3_1:-40848981 Msa0357530:CDS
ATGGAGACTACTCAATGTGA+AGG 0.587324 3_1:-40848700 Msa0357530:CDS
TAAGTTATCCTATTATTGAG+GGG 0.588766 3_1:-40848626 Msa0357530:CDS
TGGCTCCTCCAGAATTTGGT+GGG 0.594327 3_1:-40848958 Msa0357530:CDS
GAAAGAGGGATTGCTTCAGT+TGG 0.598558 3_1:-40850044 Msa0357530:CDS
TTCATCCCACCAAATTCTGG+AGG 0.600177 3_1:+40848953 None:intergenic
AATCCCTCTTTCATGTCAGT+GGG 0.600324 3_1:+40850055 None:intergenic
AATGATTCCATATAGTGTGT+AGG 0.600717 3_1:+40849889 None:intergenic
GGCTACCTCCTTCATTGCAG+AGG 0.605797 3_1:-40850130 Msa0357530:CDS
ATGAAGGAGGTAGCCAGTAA+CGG 0.622292 3_1:+40850138 None:intergenic
CCTTTCAAGAAGCAAATCTG+AGG 0.627942 3_1:+40849866 None:intergenic
AAGGTAAAGCAATATGAGCA+GGG 0.632419 3_1:-40848810 Msa0357530:CDS
TCCATCCTCTGCAATGAAGG+AGG 0.634394 3_1:+40850125 None:intergenic
GATTATAAGTATGAAACGCA+AGG 0.635785 3_1:-40848604 Msa0357530:CDS
TCCTTCATTGCAGAGGATGG+AGG 0.645824 3_1:-40850123 Msa0357530:CDS
GCACCCACTGACATGAAAGA+GGG 0.658795 3_1:-40850058 Msa0357530:CDS
ACTGTAAACACTATAAACCA+AGG 0.661029 3_1:+40849032 None:intergenic
GGTGCACATCCTAAGAAACA+TGG 0.692331 3_1:+40850076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAAAAAAATAAGATAA+AGG + chr3_1:40849338-40849357 None:intergenic 10.0%
!!! TTATTTTTTTTGTAACAATT+TGG - chr3_1:40849343-40849362 Msa0357530:intron 10.0%
!! AATAAAAAAAAATGAGAAAA+AGG - chr3_1:40850123-40850142 Msa0357530:CDS 10.0%
!!! TTTAGAATGTATTTTTTATT+TGG + chr3_1:40850434-40850453 None:intergenic 10.0%
!! TAAAAAATACATTCTAAATA+TGG - chr3_1:40850436-40850455 Msa0357530:intron 10.0%
!! AAAAAATACATTCTAAATAT+GGG - chr3_1:40850437-40850456 Msa0357530:intron 10.0%
!!! ATAAAAAACTATTTTTGTAT+AGG - chr3_1:40851103-40851122 Msa0357530:intron 10.0%
!! TAAATTAATATACTTAATCA+AGG + chr3_1:40851780-40851799 None:intergenic 10.0%
!! TATTAATTTATTTATGTTAC+AGG - chr3_1:40851790-40851809 Msa0357530:intron 10.0%
!! AAGAGAAAAAAAATATATCA+AGG - chr3_1:40848852-40848871 Msa0357530:CDS 15.0%
!! TAACATTAATTCATGATATT+TGG - chr3_1:40849946-40849965 Msa0357530:CDS 15.0%
!!! CTTATTTATTTGTAACATTT+TGG + chr3_1:40850209-40850228 None:intergenic 15.0%
!! AATCAAAATGTAATATACAT+TGG + chr3_1:40850353-40850372 None:intergenic 15.0%
!!! AATGTATATTACATTTTGAT+TGG - chr3_1:40850352-40850371 Msa0357530:intron 15.0%
!! ATATCAATCAAGTTAATAAT+GGG + chr3_1:40850655-40850674 None:intergenic 15.0%
!!! TACTTTGAAAACATATTACT+GGG - chr3_1:40848696-40848715 Msa0357530:CDS 20.0%
!! TTGAGAAAATAGAGATAAAA+TGG - chr3_1:40848960-40848979 Msa0357530:CDS 20.0%
!!! ATCTTTATTTTTTCTCGTTT+AGG - chr3_1:40849372-40849391 Msa0357530:intron 20.0%
!! TAACATTAATTCACGATATT+TGG + chr3_1:40849601-40849620 None:intergenic 20.0%
!! TTGCAACATTTATGAAATTA+AGG + chr3_1:40849663-40849682 None:intergenic 20.0%
!! TTAATTTCATAAATGTTGCA+AGG - chr3_1:40849662-40849681 Msa0357530:intron 20.0%
!!! AAACTAAATCTCTTTTCTAT+AGG - chr3_1:40849883-40849902 Msa0357530:CDS 20.0%
!!! AACTAAATCTCTTTTCTATA+GGG - chr3_1:40849884-40849903 Msa0357530:CDS 20.0%
!!! ATCTTTATTTTTTTCCGTTT+AGG + chr3_1:40850180-40850199 None:intergenic 20.0%
!! ACGGAAAAAAATAAAGATAA+AGG - chr3_1:40850182-40850201 Msa0357530:intron 20.0%
!! TATAGACAAGATTACATTAT+AGG + chr3_1:40850240-40850259 None:intergenic 20.0%
!! ATTCTAAATATGGGTAATTA+AGG - chr3_1:40850446-40850465 Msa0357530:intron 20.0%
!! GATATCAATCAAGTTAATAA+TGG + chr3_1:40850656-40850675 None:intergenic 20.0%
!! CATGAAAAATATTAGTTGAT+AGG + chr3_1:40851227-40851246 None:intergenic 20.0%
!! TGCAAAATGACATAAAAAAA+TGG + chr3_1:40851736-40851755 None:intergenic 20.0%
!! AATATAATGTTGAATTTGAG+TGG + chr3_1:40851858-40851877 None:intergenic 20.0%
!! TCAAATTCAACATTATATTG+AGG - chr3_1:40851859-40851878 Msa0357530:intron 20.0%
!! AGTTTGATTGTAAAATCAAT+TGG - chr3_1:40851929-40851948 Msa0357530:intron 20.0%
!!! AAGGATTTTAATGAAATGTT+TGG - chr3_1:40852172-40852191 Msa0357530:intron 20.0%
!!! TACCTTATTTTTGTTTAGGT+TGG + chr3_1:40848471-40848490 None:intergenic 25.0%
!!! CACTTACCTTATTTTTGTTT+AGG + chr3_1:40848475-40848494 None:intergenic 25.0%
!! TACTTTGAAAACATATGACT+GGG - chr3_1:40848657-40848676 Msa0357530:CDS 25.0%
!! CTACTTTGAAAACATATTAC+TGG - chr3_1:40848695-40848714 Msa0357530:CDS 25.0%
!! ACTTTGAAAACATATTACTG+GGG - chr3_1:40848697-40848716 Msa0357530:CDS 25.0%
! CAAAGATAGTATAAAACTGA+GGG + chr3_1:40848825-40848844 None:intergenic 25.0%
!! CATCAGTTATGATTTTTGTT+CGG - chr3_1:40848876-40848895 Msa0357530:CDS 25.0%
!!! TGTTTCTAAAACCTAGAATT+AGG - chr3_1:40848928-40848947 Msa0357530:CDS 25.0%
! AAATAAAATAACAGCACCTA+AGG - chr3_1:40849185-40849204 Msa0357530:intron 25.0%
! AATAAAATAACAGCACCTAA+GGG - chr3_1:40849186-40849205 Msa0357530:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG + chr3_1:40849917-40849936 None:intergenic 25.0%
! TACAAAAGTTAAGATTGTTC+TGG - chr3_1:40849726-40849745 Msa0357530:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG - chr3_1:40849917-40849936 Msa0357530:CDS 25.0%
!! TTTTTCTGATTCAATGAAGA+TGG - chr3_1:40849988-40850007 Msa0357530:CDS 25.0%
!!! TGGTATTTTTGGATAAAGAT+AGG + chr3_1:40850760-40850779 None:intergenic 25.0%
! AAGGTTAGACAATGAATAAT+GGG + chr3_1:40850909-40850928 None:intergenic 25.0%
! AAAGGTTAGACAATGAATAA+TGG + chr3_1:40850910-40850929 None:intergenic 25.0%
! TTAATCGTAGTAATTACCTT+TGG + chr3_1:40851026-40851045 None:intergenic 25.0%
! TATACATAAACACTTATGCA+AGG + chr3_1:40851056-40851075 None:intergenic 25.0%
! TTGCATAAGTGTTTATGTAT+AGG - chr3_1:40851055-40851074 Msa0357530:intron 25.0%
! ATCAACTATAGTTAGTTGAT+AGG - chr3_1:40851174-40851193 Msa0357530:intron 25.0%
! TATATTGAGGTAATTTCAAG+TGG - chr3_1:40851872-40851891 Msa0357530:intron 25.0%
! TTATAGAAGCAGCAAAAAAA+TGG - chr3_1:40851966-40851985 Msa0357530:intron 25.0%
! ATAAACATTGTTTGCTTCTT+TGG - chr3_1:40852124-40852143 Msa0357530:intron 25.0%
! TCTAAGTTATCCTATTATTG+AGG - chr3_1:40852225-40852244 Msa0357530:intron 25.0%
! CTAAGTTATCCTATTATTGA+GGG - chr3_1:40852226-40852245 Msa0357530:intron 25.0%
! TAAGTTATCCTATTATTGAG+GGG - chr3_1:40852227-40852246 Msa0357530:intron 25.0%
!!! TGAGAGGATAATCTTATTTT+TGG - chr3_1:40852364-40852383 Msa0357530:intron 25.0%
GTCCAACCTAAACAAAAATA+AGG - chr3_1:40848466-40848485 Msa0357530:three_prime_UTR 30.0%
!! GAATTTTGTTGCTGTTGAAT+TGG + chr3_1:40848526-40848545 None:intergenic 30.0%
ATTCAACAGCAACAAAATTC+TGG - chr3_1:40848526-40848545 Msa0357530:three_prime_UTR 30.0%
TTCAACAGCAACAAAATTCT+GGG - chr3_1:40848527-40848546 Msa0357530:three_prime_UTR 30.0%
GAACAAATTTCAAGAGACAA+TGG + chr3_1:40848568-40848587 None:intergenic 30.0%
! CTACTTTGAAAACATATGAC+TGG - chr3_1:40848656-40848675 Msa0357530:CDS 30.0%
! ACTTTGAAAACATATGACTG+GGG - chr3_1:40848658-40848677 Msa0357530:CDS 30.0%
! CTTTGAAAACATATTACTGG+GGG - chr3_1:40848698-40848717 Msa0357530:CDS 30.0%
TTTGAAAACATATTACTGGG+GGG - chr3_1:40848699-40848718 Msa0357530:CDS 30.0%
TAAAACTGAGGGAATATAAG+TGG + chr3_1:40848814-40848833 None:intergenic 30.0%
CCAAAGATAGTATAAAACTG+AGG + chr3_1:40848826-40848845 None:intergenic 30.0%
!! CCTCAGTTTTATACTATCTT+TGG - chr3_1:40848823-40848842 Msa0357530:CDS 30.0%
TTCGGAAAAAGAGTTTACTT+AGG - chr3_1:40848894-40848913 Msa0357530:CDS 30.0%
!!! GGTTTTAGAAACAAATTCAG+TGG + chr3_1:40848921-40848940 None:intergenic 30.0%
AAGTTTCTCTACCTAATTCT+AGG + chr3_1:40848942-40848961 None:intergenic 30.0%
ATAAAATGGTATGAATCGCT+CGG - chr3_1:40848974-40848993 Msa0357530:CDS 30.0%
GTATATAATCCCAAATGACT+GGG + chr3_1:40849006-40849025 None:intergenic 30.0%
TGTATATAATCCCAAATGAC+TGG + chr3_1:40849007-40849026 None:intergenic 30.0%
! TGCGATTTTTAATGTAGTTG+TGG + chr3_1:40849116-40849135 None:intergenic 30.0%
ATAAAATAACAGCACCTAAG+GGG - chr3_1:40849187-40849206 Msa0357530:intron 30.0%
!! TGTGCTTTTAAGAGAGATAA+AGG + chr3_1:40849399-40849418 None:intergenic 30.0%
GAACATCTTCATCATATTTC+TGG + chr3_1:40850042-40850061 None:intergenic 30.0%
AGAAGATGATGAAGATTCAA+AGG + chr3_1:40849545-40849564 None:intergenic 30.0%
ATTTCATAAATGTTGCAAGG+CGG - chr3_1:40849665-40849684 Msa0357530:intron 30.0%
TCTAACTCAATATTCCAACA+CGG + chr3_1:40849805-40849824 None:intergenic 30.0%
GAACATCTTCATCATATTTC+TGG - chr3_1:40850042-40850061 Msa0357530:CDS 30.0%
TGAGAGATAAAAGACCTAAA+CGG - chr3_1:40850163-40850182 Msa0357530:CDS 30.0%
AAATACCCTCTAAACAAGAT+AGG - chr3_1:40850393-40850412 Msa0357530:intron 30.0%
AATACCCTCTAAACAAGATA+GGG - chr3_1:40850394-40850413 Msa0357530:intron 30.0%
! ATTACCCTATCTTGTTTAGA+GGG + chr3_1:40850401-40850420 None:intergenic 30.0%
AATATGGGTAATTAAGGATC+AGG - chr3_1:40850452-40850471 Msa0357530:intron 30.0%
! TTAACTTGATTGATATCCAC+AGG - chr3_1:40850659-40850678 Msa0357530:intron 30.0%
! CCTAAGAAACATGGTATTTT+TGG + chr3_1:40850771-40850790 None:intergenic 30.0%
CCAAAAATACCATGTTTCTT+AGG - chr3_1:40850768-40850787 Msa0357530:intron 30.0%
AAATATAGCCCATTCACTTA+CGG - chr3_1:40850870-40850889 Msa0357530:intron 30.0%
TGTGTAGGCAATAGTATATT+GGG + chr3_1:40850952-40850971 None:intergenic 30.0%
AATGATTCCATATAGTGTGT+AGG + chr3_1:40850967-40850986 None:intergenic 30.0%
AGGAATTTCTGTATTTCCAA+AGG - chr3_1:40851007-40851026 Msa0357530:intron 30.0%
!! TTTTAGAGATGCAACTCAAA+AGG + chr3_1:40851296-40851315 None:intergenic 30.0%
GAAACAACTTATGTTACAAG+TGG - chr3_1:40851615-40851634 Msa0357530:intron 30.0%
ACTGTAAACACTATAAACCA+AGG + chr3_1:40851824-40851843 None:intergenic 30.0%
AAGCAGCAAAAAAATGGTTT+GGG - chr3_1:40851972-40851991 Msa0357530:intron 30.0%
!! CAGGGTAAGTTTAATTTTGA+AGG - chr3_1:40852061-40852080 Msa0357530:intron 30.0%
ATTATGAGCAACACAATCAA+TGG + chr3_1:40852106-40852125 None:intergenic 30.0%
GATAGCTAATGAGAAAAAGT+TGG + chr3_1:40852198-40852217 None:intergenic 30.0%
CTTATAATCCCCTCAATAAT+AGG + chr3_1:40852238-40852257 None:intergenic 30.0%
GATTATAAGTATGAAACGCA+AGG - chr3_1:40852249-40852268 Msa0357530:intron 30.0%
! TAAGCTTAGATGATTTTGAG+AGG - chr3_1:40852348-40852367 Msa0357530:intron 30.0%
!! TTTTGTTGCTGTTGAATTGG+TGG + chr3_1:40848523-40848542 None:intergenic 35.0%
! CTTTGAAAACATATGACTGG+GGG - chr3_1:40848659-40848678 Msa0357530:CDS 35.0%
GCTAATGATTCCAATCTACT+TGG - chr3_1:40849067-40849086 Msa0357530:intron 35.0%
GAAGCTTCAAAGAAAGAAGA+TGG - chr3_1:40850012-40850031 Msa0357530:CDS 35.0%
! TGATTGGTTGATATCATGAG+AGG - chr3_1:40850368-40850387 Msa0357530:intron 35.0%
! GATTGGTTGATATCATGAGA+GGG - chr3_1:40850369-40850388 Msa0357530:intron 35.0%
! GATTACCCTATCTTGTTTAG+AGG + chr3_1:40850402-40850421 None:intergenic 35.0%
AATATAGCCCATTCACTTAC+GGG - chr3_1:40850871-40850890 Msa0357530:intron 35.0%
TTGAAATCCCGTAAGTGAAT+GGG + chr3_1:40850881-40850900 None:intergenic 35.0%
GTGTGTAGGCAATAGTATAT+TGG + chr3_1:40850953-40850972 None:intergenic 35.0%
ACTATTGCCTACACACTATA+TGG - chr3_1:40850957-40850976 Msa0357530:intron 35.0%
! ATTGAGGTAATTTCAAGTGG+TGG - chr3_1:40851875-40851894 Msa0357530:intron 35.0%
GAAGCAGCAAAAAAATGGTT+TGG - chr3_1:40851971-40851990 Msa0357530:intron 35.0%
!! AAAATGGTTTGGGTTGAACA+AGG - chr3_1:40851982-40852001 Msa0357530:intron 35.0%
!! AAATGGTTTGGGTTGAACAA+GGG - chr3_1:40851983-40852002 Msa0357530:intron 35.0%
CAAAGCAGTTGACAAAGATA+AGG - chr3_1:40852024-40852043 Msa0357530:intron 35.0%
TAAGGTAAAGCAATATGAGC+AGG - chr3_1:40852042-40852061 Msa0357530:intron 35.0%
AAGGTAAAGCAATATGAGCA+GGG - chr3_1:40852043-40852062 Msa0357530:intron 35.0%
AACATTGTTTGCTTCTTTGG+TGG - chr3_1:40852127-40852146 Msa0357530:intron 35.0%
! TTTGCTTCTTTGGTGGTTTA+TGG - chr3_1:40852134-40852153 Msa0357530:intron 35.0%
ATAAGTATGAAACGCAAGGT+TGG - chr3_1:40852253-40852272 Msa0357530:intron 35.0%
TAAGTATGAAACGCAAGGTT+GGG - chr3_1:40852254-40852273 Msa0357530:intron 35.0%
! ACGTACTCATATGCTTTTCA+TGG + chr3_1:40852295-40852314 None:intergenic 35.0%
CAAGAGACAATGGTGATTTG+TGG + chr3_1:40848558-40848577 None:intergenic 40.0%
! AAATTTGTTCTTCCCACTGC+TGG - chr3_1:40848578-40848597 Msa0357530:exon 40.0%
CATTAAATCCAACCAGCAGT+GGG + chr3_1:40848593-40848612 None:intergenic 40.0%
TATCATCCACAGAAGCTTGA+GGG - chr3_1:40848620-40848639 Msa0357530:CDS 40.0%
CAACCATATAGCAAGGATAG+TGG - chr3_1:40848780-40848799 Msa0357530:CDS 40.0%
! CAACCACTATCCTTGCTATA+TGG + chr3_1:40848786-40848805 None:intergenic 40.0%
! CATATAGCAAGGATAGTGGT+TGG - chr3_1:40848784-40848803 Msa0357530:CDS 40.0%
TGTAACTGCTCCAAGTAGAT+TGG + chr3_1:40849080-40849099 None:intergenic 40.0%
! TGCAAAGCTGCTCTCAATTT+TGG - chr3_1:40849766-40849785 Msa0357530:intron 40.0%
! GCAAAGCTGCTCTCAATTTT+GGG - chr3_1:40849767-40849786 Msa0357530:intron 40.0%
! CAAAGCTGCTCTCAATTTTG+GGG - chr3_1:40849768-40849787 Msa0357530:intron 40.0%
!!! GGGTTATTTTTATGCCGTGT+TGG - chr3_1:40849788-40849807 Msa0357530:intron 40.0%
CAATGGACGACTTAAGTGAT+TGG - chr3_1:40850577-40850596 Msa0357530:intron 40.0%
GACGACTTAAGTGATTGGAA+TGG - chr3_1:40850582-40850601 Msa0357530:intron 40.0%
ACTTGATTGATATCCACAGG+TGG - chr3_1:40850662-40850681 Msa0357530:intron 40.0%
CTTGATTGATATCCACAGGT+GGG - chr3_1:40850663-40850682 Msa0357530:intron 40.0%
!! AAACTTGAGAGTACCGTTAC+TGG - chr3_1:40850702-40850721 Msa0357530:intron 40.0%
AATCCCTCTTTCATGTCAGT+GGG + chr3_1:40850801-40850820 None:intergenic 40.0%
!! GATTGCTTCAGTTGGTAAAG+TGG - chr3_1:40850817-40850836 Msa0357530:intron 40.0%
ACATCTGAACTTCTCTTGCT+TGG - chr3_1:40850840-40850859 Msa0357530:intron 40.0%
CTTGAAATCCCGTAAGTGAA+TGG + chr3_1:40850882-40850901 None:intergenic 40.0%
TGTGGTTGTGAAGTAGCAAA+AGG + chr3_1:40850928-40850947 None:intergenic 40.0%
! GGCAATAGTATATTGGGTTG+TGG + chr3_1:40850946-40850965 None:intergenic 40.0%
CCTTTCAAGAAGCAAATCTG+AGG + chr3_1:40850990-40851009 None:intergenic 40.0%
! CCTCAGATTTGCTTCTTGAA+AGG - chr3_1:40850987-40851006 Msa0357530:intron 40.0%
TGTTACAGGTTACAGAACCT+TGG - chr3_1:40851804-40851823 Msa0357530:intron 40.0%
TTGTTCATCCCACCAAATTC+TGG + chr3_1:40851906-40851925 None:intergenic 40.0%
! TGAAGGTGCAACATTGTTCA+TGG - chr3_1:40852078-40852097 Msa0357530:intron 40.0%
ATGGAGACTACTCAATGTGA+AGG - chr3_1:40852153-40852172 Msa0357530:intron 40.0%
! GAGACAATGGTGATTTGTGG+AGG + chr3_1:40848555-40848574 None:intergenic 45.0%
GCATTAAATCCAACCAGCAG+TGG + chr3_1:40848594-40848613 None:intergenic 45.0%
CTATCATCCACAGAAGCTTG+AGG - chr3_1:40848619-40848638 Msa0357530:CDS 45.0%
ATCATCCACAGAAGCTTGAG+GGG - chr3_1:40848621-40848640 Msa0357530:CDS 45.0%
AGACGACCCAGATTCAATGA+TGG - chr3_1:40848752-40848771 Msa0357530:CDS 45.0%
GACGACCCAGATTCAATGAT+GGG - chr3_1:40848753-40848772 Msa0357530:CDS 45.0%
GTCTGCCCATCATTGAATCT+GGG + chr3_1:40848761-40848780 None:intergenic 45.0%
TGTCTGCCCATCATTGAATC+TGG + chr3_1:40848762-40848781 None:intergenic 45.0%
AATGGTATGAATCGCTCGGA+AGG - chr3_1:40848978-40848997 Msa0357530:CDS 45.0%
CATAAATGTTGCAAGGCGGA+TGG - chr3_1:40849669-40849688 Msa0357530:intron 45.0%
AAAGTCAGGCAAAGGAGATC+TGG + chr3_1:40850539-40850558 None:intergenic 45.0%
ACACACTCAAAGTCAGGCAA+AGG + chr3_1:40850547-40850566 None:intergenic 45.0%
TACCTCACACACTCAAAGTC+AGG + chr3_1:40850553-40850572 None:intergenic 45.0%
AGTGTGTGAGGTAAACGCAA+TGG - chr3_1:40850560-40850579 Msa0357530:intron 45.0%
ATGAAGGAGGTAGCCAGTAA+CGG + chr3_1:40850718-40850737 None:intergenic 45.0%
GGTGCACATCCTAAGAAACA+TGG + chr3_1:40850780-40850799 None:intergenic 45.0%
CAATCCCTCTTTCATGTCAG+TGG + chr3_1:40850802-40850821 None:intergenic 45.0%
GAAAGAGGGATTGCTTCAGT+TGG - chr3_1:40850809-40850828 Msa0357530:intron 45.0%
TTCATCCCACCAAATTCTGG+AGG + chr3_1:40851903-40851922 None:intergenic 45.0%
!! TAGAAAATAATAATAATATA+CGG - chr3_1:40849821-40849840 Msa0357530:intron 5.0%
!!! TATAAAAAAAAAACAATTTT+AGG + chr3_1:40850294-40850313 None:intergenic 5.0%
TTGTTCTTCCCACTGCTGGT+TGG - chr3_1:40848582-40848601 Msa0357530:exon 50.0%
GGGCAGACAACCATATAGCA+AGG - chr3_1:40848773-40848792 Msa0357530:CDS 50.0%
TCGGAAGGAACCCAGTCATT+TGG - chr3_1:40848993-40849012 Msa0357530:CDS 50.0%
CGGAAGGAACCCAGTCATTT+GGG - chr3_1:40848994-40849013 Msa0357530:CDS 50.0%
AAATGTTGCAAGGCGGATGG+TGG - chr3_1:40849672-40849691 Msa0357530:intron 50.0%
AGGCTTAGTCACTAGCGGAA+GGG - chr3_1:40849695-40849714 Msa0357530:intron 50.0%
TAGTCACTAGCGGAAGGGTT+AGG - chr3_1:40849700-40849719 Msa0357530:intron 50.0%
AGGATCAGGATTCTCTCTCG+TGG - chr3_1:40850466-40850485 Msa0357530:intron 50.0%
TGGATGGTCCACATTCACAC+GGG + chr3_1:40850519-40850538 None:intergenic 50.0%
CTGGATGGTCCACATTCACA+CGG + chr3_1:40850520-40850539 None:intergenic 50.0%
TCAGGCAAAGGAGATCTGGA+TGG + chr3_1:40850535-40850554 None:intergenic 50.0%
TGCCTGACTTTGAGTGTGTG+AGG - chr3_1:40850548-40850567 Msa0357530:intron 50.0%
GCATAAGAGAATCCCACCTG+TGG + chr3_1:40850678-40850697 None:intergenic 50.0%
ACCTCCTTCATTGCAGAGGA+TGG - chr3_1:40850727-40850746 Msa0357530:intron 50.0%
TCCATCCTCTGCAATGAAGG+AGG + chr3_1:40850731-40850750 None:intergenic 50.0%
TCCTTCATTGCAGAGGATGG+AGG - chr3_1:40850730-40850749 Msa0357530:intron 50.0%
ACCTCCATCCTCTGCAATGA+AGG + chr3_1:40850734-40850753 None:intergenic 50.0%
TGCACCCACTGACATGAAAG+AGG - chr3_1:40850794-40850813 Msa0357530:intron 50.0%
GCACCCACTGACATGAAAGA+GGG - chr3_1:40850795-40850814 Msa0357530:intron 50.0%
TGGCTCCTCCAGAATTTGGT+GGG - chr3_1:40851895-40851914 Msa0357530:intron 50.0%
GTCATCCCCTCAAGCTTCTG+TGG + chr3_1:40848629-40848648 None:intergenic 55.0%
GAATCTGGGTCGTCTGCACT+AGG + chr3_1:40848747-40848766 None:intergenic 55.0%
GGTGGAGGCTTAGTCACTAG+CGG - chr3_1:40849690-40849709 Msa0357530:intron 55.0%
GAGGCTTAGTCACTAGCGGA+AGG - chr3_1:40849694-40849713 Msa0357530:intron 55.0%
CTCTCTCGTGGCAATCTCAC+TGG - chr3_1:40850478-40850497 Msa0357530:intron 55.0%
TCCACATTCACACGGGAGTC+GGG + chr3_1:40850512-40850531 None:intergenic 55.0%
GTCCACATTCACACGGGAGT+CGG + chr3_1:40850513-40850532 None:intergenic 55.0%
GGCTACCTCCTTCATTGCAG+AGG - chr3_1:40850723-40850742 Msa0357530:intron 55.0%
GTGGTGGCTCCTCCAGAATT+TGG - chr3_1:40851891-40851910 Msa0357530:intron 55.0%
GTGGCTCCTCCAGAATTTGG+TGG - chr3_1:40851894-40851913 Msa0357530:intron 55.0%
! TGTTGCAAGGCGGATGGTGG+AGG - chr3_1:40849675-40849694 Msa0357530:intron 60.0%
CACATTCACACGGGAGTCGG+GGG + chr3_1:40850510-40850529 None:intergenic 60.0%
CCACATTCACACGGGAGTCG+GGG + chr3_1:40850511-40850530 None:intergenic 60.0%
CCCCGACTCCCGTGTGAATG+TGG - chr3_1:40850508-40850527 Msa0357530:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 40848464 40852411 40848464 ID=Msa0357530;Name=Msa0357530
chr3_1 mRNA 40848464 40852411 40848464 ID=Msa0357530-mRNA-1;Parent=Msa0357530;Name=Msa0357530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|0.66|1|1|3|132|279
chr3_1 exon 40848464 40849063 40848464 ID=Msa0357530-mRNA-1:exon:7119;Parent=Msa0357530-mRNA-1
chr3_1 exon 40849847 40850194 40849847 ID=Msa0357530-mRNA-1:exon:7118;Parent=Msa0357530-mRNA-1
chr3_1 exon 40852388 40852411 40852388 ID=Msa0357530-mRNA-1:exon:7117;Parent=Msa0357530-mRNA-1
chr3_1 CDS 40852388 40852411 40852388 ID=Msa0357530-mRNA-1:cds;Parent=Msa0357530-mRNA-1
chr3_1 CDS 40849847 40850194 40849847 ID=Msa0357530-mRNA-1:cds;Parent=Msa0357530-mRNA-1
chr3_1 CDS 40848596 40849063 40848596 ID=Msa0357530-mRNA-1:cds;Parent=Msa0357530-mRNA-1
chr3_1 three_prime_UTR 40848464 40848595 40848464 ID=Msa0357530-mRNA-1:three_prime_utr;Parent=Msa0357530-mRNA-1
Gene Sequence

>Msa0357530

ATGTCCAACCTAAACAAAAATAAGGTGGGATTCTCTTATGCTATAAAACTTGAGAGTACCGTTACTGGCTACCTCCTTCATTGCAGAGGATGGAGGTCAACCTATCTTTATCCAAAAATACCATGTTTCTTAGGATGTGCACCCACTGACATGAAAGAGGGATTGCTTCAGTTGGTAAAGTGGACATCTGAACTTCTCTTGCTTGGAATCTCTAAATATAGCCCATTCACTTACGGGATTTCAAGATTGCCCATTATTCATTGTCTAACCTTTTGCTACTTCACAACCACAACCCAATATACTATTGCCTACACACTATATGGAATCATTCCTCAGATTTGCTTCTTGAAAGGAATTTCTGTATTTCCAAAGGTTACAGAACCTTGGTTTATAGTGTTTACAGTATTATATGTATCCACTCAAATTCAACATTATATTGAGGTAATTTCAAGTGGTGGCTCCTCCAGAATTTGGTGGGATGAACAAAGAAGTTTGATTGTAAAATCAATTGGATGTTTTTTTGCAATTATAGAAGCAGCAAAAAAATGGTTTGGGTTGAACAAGGGAAAATTCAATTTATCAAACAAAGCAGTTGACAAAGATAAGGTAAAGCAATATGAGCAGGGTAAGTTTAATTTTGAAGGTGCAACATTGTTCATGGCACCATTGATTGTGTTGCTCATAATAAACATTGTTTGCTTCTTTGGTGGTTTATGGAGACTACTCAATGTGAAGGATTTTAATGAAATGTTTGGCCAACTTTTTCTCATTAGCTATCTAATAGCTCTAAGTTATCCTATTATTGAGGGGATTATAAGTATGAAACGCAAGGTTGGGTAG

Protein sequence

>Msa0357530

MSNLNKNKVGFSYAIKLESTVTGYLLHCRGWRSTYLYPKIPCFLGCAPTDMKEGLLQLVKWTSELLLLGISKYSPFTYGISRLPIIHCLTFCYFTTTTQYTIAYTLYGIIPQICFLKGISVFPKVTEPWFIVFTVLYVSTQIQHYIEVISSGGSSRIWWDEQRSLIVKSIGCFFAIIEAAKKWFGLNKGKFNLSNKAVDKDKVKQYEQGKFNFEGATLFMAPLIVLLIINIVCFFGGLWRLLNVKDFNEMFGQLFLISYLIALSYPIIEGIISMKRKVG*