AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136090 MtrunA17_Chr1g0207241 95.572 542 23 1 1 541 46 587 0.0 1079
Msa0136090 MtrunA17_Chr1g0207211 76.059 543 128 1 1 541 40 582 0.0 873
Msa0136090 MtrunA17_Chr1g0207201 77.637 474 106 0 68 541 1 474 0.0 785
Msa0136090 MtrunA17_Chr1g0207231 73.840 474 124 0 68 541 1 474 0.0 763
Msa0136090 MtrunA17_Chr7g0223191 50.195 514 252 3 1 514 5 514 0.0 530
Msa0136090 MtrunA17_Chr4g0037551 48.924 511 257 3 4 514 37 543 4.50e-178 514
Msa0136090 MtrunA17_Chr5g0421191 47.767 515 265 3 1 515 31 541 7.70e-176 508
Msa0136090 MtrunA17_Chr3g0145541 39.749 478 271 7 69 539 90 557 1.09e-111 343
Msa0136090 MtrunA17_Chr3g0135341 30.085 472 294 12 5 450 192 653 4.12e-61 214
Msa0136090 MtrunA17_Chr1g0151951 27.993 568 359 15 5 539 380 930 6.64e-58 207
Msa0136090 MtrunA17_Chr4g0068081 48.205 195 65 3 291 485 1 159 1.60e-51 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136090 AT4G33840.1 50.662 529 254 5 1 526 34 558 0.0 544
Msa0136090 AT4G33860.1 50.195 514 249 5 4 514 37 546 1.23e-173 503
Msa0136090 AT4G33830.1 48.669 526 262 6 4 526 38 558 1.47e-173 503
Msa0136090 AT4G33820.1 47.156 545 256 7 1 535 41 563 4.64e-172 498
Msa0136090 AT4G33810.1 47.145 543 258 7 1 535 1 522 3.86e-166 482
Msa0136090 AT4G33810.5 47.145 543 258 7 1 535 1 522 3.86e-166 482
Msa0136090 AT4G33810.2 47.145 543 258 7 1 535 41 562 1.56e-165 482
Msa0136090 AT4G33810.3 47.145 543 258 7 1 535 41 562 1.56e-165 482
Msa0136090 AT4G33810.4 47.145 543 258 7 1 535 41 562 1.56e-165 482
Msa0136090 AT2G14690.1 48.447 483 233 7 62 528 74 556 3.63e-161 471
Msa0136090 AT4G38650.1 40.947 486 269 8 64 540 85 561 6.82e-123 372
Msa0136090 AT4G38300.1 44.015 259 131 4 162 420 10 254 6.90e-72 231
Msa0136090 AT1G58370.1 30.297 472 288 12 9 450 366 826 1.40e-60 215
Msa0136090 AT1G58370.2 30.297 472 288 12 9 450 394 854 1.90e-60 215
Msa0136090 AT1G10050.2 28.975 566 351 15 9 539 514 1063 2.85e-59 213
Msa0136090 AT1G10050.1 28.975 566 351 15 9 539 514 1063 2.85e-59 213
Msa0136090 AT1G10050.3 28.975 566 351 15 9 539 546 1095 3.30e-59 213
Msa0136090 AT4G08160.1 30.081 492 317 13 42 515 245 727 2.55e-58 207
Msa0136090 AT4G08160.2 31.591 421 263 11 42 445 245 657 1.77e-57 203

Find 100 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAACCATTTACTAAAA+AGG 0.196675 1_3:-67885505 Msa0136090:CDS
GTAATATTGGATTTCCAATA+TGG 0.244796 1_3:-67884410 Msa0136090:CDS
GATAAATACTTAACCCATTC+AGG 0.250247 1_3:+67884816 None:intergenic
TTAGAATTTGCTAAAGATAA+TGG 0.267266 1_3:-67884888 Msa0136090:CDS
CTGGCTTCTGTGAGCCATAT+TGG 0.278897 1_3:+67884396 None:intergenic
CGCGGCTTTGCGCAATTCAT+CGG 0.294861 1_3:+67884791 None:intergenic
TATCCTCATAAAAGTGAAAA+TGG 0.296065 1_3:+67884694 None:intergenic
GAATTGAATCTGTTGTTAAA+AGG 0.302891 1_3:-67884761 Msa0136090:CDS
CTTGTCCAGTTGGAGTAGTT+TGG 0.315012 1_3:+67884113 None:intergenic
GCAAATTCTAACATTGCATC+TGG 0.318088 1_3:+67884900 None:intergenic
ATAATCCAAGTGTGGAACTA+TGG 0.323555 1_3:-67885542 Msa0136090:CDS
CTATCTGCTTTGGCTGTATA+AGG 0.325055 1_3:+67884055 None:intergenic
ATAGAGGGTTGGACAGTATC+TGG 0.325119 1_3:-67886348 Msa0136090:CDS
TTGGCTGGCCACTTGCAAAA+TGG 0.329470 1_3:+67884469 None:intergenic
AGGAATCAATATACCTGATT+TGG 0.339675 1_3:+67884360 None:intergenic
GGATGTTGGTCTCTTCTAAA+AGG 0.342664 1_3:-67885982 Msa0136090:CDS
ACAAAGGCAGATTTCCCATT+TGG 0.372177 1_3:-67885062 Msa0136090:CDS
CAAGGGATTATAATGTTTGC+TGG 0.384553 1_3:-67884184 Msa0136090:CDS
GACCTCATGTAAGCAAGATT+TGG 0.386824 1_3:+67884450 None:intergenic
ATGGCTCACAGAAGCCAGTT+TGG 0.392362 1_3:-67884391 Msa0136090:CDS
ATCTTGACACAAACCATTCC+TGG 0.399462 1_3:+67885000 None:intergenic
AATTCCTCTACTATCTGCTT+TGG 0.405314 1_3:+67884045 None:intergenic
TATAGTACAGAGAAAATTCC+AGG 0.407018 1_3:-67884942 Msa0136090:CDS
TCTGTTGTATTTAAAACAAA+TGG 0.407940 1_3:-67886045 Msa0136090:CDS
GCGGCTTTGCGCAATTCATC+GGG 0.408559 1_3:+67884792 None:intergenic
ATTATAATCCCTTGAACTGC+TGG 0.416207 1_3:+67884193 None:intergenic
GGACAATTTGATTCTTGAAT+GGG 0.428361 1_3:-67884086 Msa0136090:CDS
AATTTCCAAACTACTCCAAC+TGG 0.432243 1_3:-67884118 Msa0136090:CDS
GAACCTCAGAGAGCACAATA+TGG 0.433972 1_3:-67886408 Msa0136090:CDS
CTTGAGGAGATTATGCAATC+TGG 0.434202 1_3:-67884531 Msa0136090:CDS
TATAATACTATTGAATATAG+TGG 0.435039 1_3:-67884591 Msa0136090:CDS
TGGACAATTTGATTCTTGAA+TGG 0.435532 1_3:-67884087 Msa0136090:CDS
TACTCTCATCCAGCAGTTCA+AGG 0.446618 1_3:-67884202 Msa0136090:CDS
CAAAAGGTTCAGCTAGAGAA+AGG 0.450854 1_3:-67886237 Msa0136090:CDS
TTTCATTTACATTACTTACA+TGG 0.451163 1_3:+67885120 None:intergenic
TTTGGATCCTCAGCCAAATC+AGG 0.451900 1_3:-67884373 Msa0136090:intron
TTGATTCTTGAATGGGGAAG+TGG 0.457488 1_3:-67884079 Msa0136090:CDS
TGAATTTAAGTGTCAGGAAA+GGG 0.466143 1_3:-67883949 Msa0136090:CDS
ATCAAGACAACAACATTGAA+AGG 0.467422 1_3:-67885470 Msa0136090:CDS
ATTTGGCTGAGGATCCAAAC+TGG 0.478667 1_3:+67884377 None:intergenic
TCCTTCACTCAGCTGAAGCC+AGG 0.479525 1_3:+67886080 None:intergenic
GCAGATTTCCCATTTGGATG+TGG 0.480363 1_3:-67885056 Msa0136090:CDS
TGGTTCATCCCACATCCAAA+TGG 0.480525 1_3:+67885047 None:intergenic
CAGATTTCCCATTTGGATGT+GGG 0.482548 1_3:-67885055 Msa0136090:CDS
TAATCCAAGTGTGGAACTAT+GGG 0.498083 1_3:-67885541 Msa0136090:CDS
GGTTGGACAGTATCTGGAAA+TGG 0.499106 1_3:-67886342 Msa0136090:CDS
TACTCCAACTGGACAAGTTG+TGG 0.508753 1_3:-67884107 Msa0136090:CDS
ACCTCGAAAAGAATCTCAGC+CGG 0.511024 1_3:+67885934 None:intergenic
CTGTTGAAACCAGCTTGTGC+TGG 0.513392 1_3:+67884160 None:intergenic
TTGAATTTAAGTGTCAGGAA+AGG 0.514898 1_3:-67883950 Msa0136090:CDS
AATCTTGCTTACATGAGGTC+AGG 0.523790 1_3:-67884447 Msa0136090:CDS
GGTTCATCCCACATCCAAAT+GGG 0.524124 1_3:+67885048 None:intergenic
AAAATGGCCTTGCAATCCTA+TGG 0.528513 1_3:+67884485 None:intergenic
GAGGAACGTATATCAAATGA+TGG 0.531631 1_3:-67886312 Msa0136090:CDS
GTAGATATTTCATTACATCA+TGG 0.536564 1_3:-67884022 Msa0136090:CDS
TTTGCTGGTCCAGCACAAGC+TGG 0.541008 1_3:-67884169 Msa0136090:CDS
AGGATTTGATCACAACATAG+AGG 0.543988 1_3:-67886364 Msa0136090:CDS
ACTGAAATGTTATTTGCCAT+AGG 0.544070 1_3:-67884501 Msa0136090:CDS
ATCTGGAAATGGAACAATTG+AGG 0.546320 1_3:-67886331 Msa0136090:CDS
TCAACCCATAGTTCCACACT+TGG 0.551818 1_3:+67885537 None:intergenic
GCCTGGCTTCAGCTGAGTGA+AGG 0.552848 1_3:-67886081 Msa0136090:CDS
TCAAGACAACAACATTGAAA+GGG 0.555279 1_3:-67885469 Msa0136090:intron
CCTCGAAAAGAATCTCAGCC+GGG 0.555600 1_3:+67885935 None:intergenic
TTATTTGCCATAGGATTGCA+AGG 0.558146 1_3:-67884492 Msa0136090:CDS
CCCAGAAAATGTTATGACCT+CGG 0.560200 1_3:+67884856 None:intergenic
CAAACATTGACTACCAGGAA+TGG 0.563798 1_3:-67885013 Msa0136090:CDS
TGATTCTTGAATGGGGAAGT+GGG 0.567685 1_3:-67884078 Msa0136090:CDS
TTGATCACAACATAGAGGGT+TGG 0.568919 1_3:-67886359 Msa0136090:CDS
TCATGTAAGCAAGATTTGGC+TGG 0.570296 1_3:+67884454 None:intergenic
ACAAAGGAGAATTGATAGCA+TGG 0.571786 1_3:-67884737 Msa0136090:CDS
CTTTCACTAATGAGATGAAG+TGG 0.573436 1_3:-67884965 Msa0136090:CDS
CAATATACCTGATTTGGCTG+AGG 0.579698 1_3:+67884366 None:intergenic
CAAATTCTAACATTGCATCT+GGG 0.582016 1_3:+67884901 None:intergenic
TTGTCCACAACTTGTCCAGT+TGG 0.589012 1_3:+67884103 None:intergenic
CAATGTTTGTGAGAATATGA+TGG 0.591061 1_3:+67885027 None:intergenic
GGATTTGATCACAACATAGA+GGG 0.591949 1_3:-67886363 Msa0136090:CDS
TCTGTTGTTAAAAGGTACAA+AGG 0.592676 1_3:-67884753 Msa0136090:CDS
CCTCCATATTGTGCTCTCTG+AGG 0.597382 1_3:+67886405 None:intergenic
TCTCACAAACATTGACTACC+AGG 0.597515 1_3:-67885018 Msa0136090:CDS
AGTCGCAAACTTCTCGAGCC+CGG 0.598167 1_3:-67885953 Msa0136090:CDS
GATAATGGAATTTCTGTCCG+AGG 0.602235 1_3:-67884873 Msa0136090:CDS
CAAAGGAGAATTGATAGCAT+GGG 0.602744 1_3:-67884736 Msa0136090:CDS
CAGAGAGCACAATATGGAGG+AGG 0.606885 1_3:-67886402 Msa0136090:CDS
TAATGTAAATGAAACAGCAT+CGG 0.612043 1_3:-67885111 Msa0136090:CDS
ACTCTCATCCAGCAGTTCAA+GGG 0.613025 1_3:-67884201 Msa0136090:CDS
ATCCATGCTTTGCTATCACA+TGG 0.619431 1_3:+67886001 None:intergenic
GCAGGCAGAGTACTTTGAAG+AGG 0.621359 1_3:-67884239 Msa0136090:intron
GTAAATGAAACAGCATCGGA+AGG 0.625967 1_3:-67885107 Msa0136090:CDS
AGTTGTGATAACACAAACAA+AGG 0.625979 1_3:-67885078 Msa0136090:CDS
TGTTGGTCTCTTCTAAAAGG+TGG 0.626713 1_3:-67885979 Msa0136090:CDS
AGCCAAATCTTGCTTACATG+AGG 0.629685 1_3:-67884452 Msa0136090:CDS
GGAGGCATTATAGTAAACTC+AGG 0.632520 1_3:-67886384 Msa0136090:CDS
GACAATTTGATTCTTGAATG+GGG 0.637575 1_3:-67884085 Msa0136090:CDS
GGCCATGTGATAGCAAAGCA+TGG 0.645129 1_3:-67886003 Msa0136090:CDS
ACAGCCAAAGCAGATAGTAG+AGG 0.647030 1_3:-67884049 Msa0136090:CDS
GCAGAGCAATAATCCAAGTG+TGG 0.666181 1_3:-67885550 Msa0136090:intron
TGATAGCAAAGCATGGATGT+TGG 0.670562 1_3:-67885996 Msa0136090:CDS
CCTCAGAGAGCACAATATGG+AGG 0.677720 1_3:-67886405 Msa0136090:CDS
AATGGAAGTGAACTTGTGCA+TGG 0.692631 1_3:-67886027 Msa0136090:CDS
GGAAGTGAACTTGTGCATGG+TGG 0.735930 1_3:-67886024 Msa0136090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTACATGTACTATT+TGG - chr1_3:67884642-67884661 Msa0136090:CDS 15.0%
!!! ATTTCTTTTGAGTATAAAAT+TGG + chr1_3:67884970-67884989 None:intergenic 15.0%
!! AAGAAATACTAAAATTAGAA+CGG - chr1_3:67884983-67885002 Msa0136090:CDS 15.0%
!!! ACATTTTGTTACAATTTTTT+TGG + chr1_3:67885096-67885115 None:intergenic 15.0%
!! TATAATACTATTGAATATAG+TGG - chr1_3:67885733-67885752 Msa0136090:intron 15.0%
!!! ATTAGATAGTTTTTCACAAA+AGG - chr1_3:67884071-67884090 Msa0136090:CDS 20.0%
!!! TCTGTTGTATTTAAAACAAA+TGG - chr1_3:67884279-67884298 Msa0136090:intron 20.0%
!!! AGTCCTTATTTTTCATTTAT+AGG - chr1_3:67884487-67884506 Msa0136090:CDS 20.0%
!!! GTCCTTATTTTTCATTTATA+GGG - chr1_3:67884488-67884507 Msa0136090:CDS 20.0%
!! ATTTATAGGGACTAAATATA+GGG - chr1_3:67884501-67884520 Msa0136090:CDS 20.0%
!!! GGGATAAATATATTTTCAAT+CGG + chr1_3:67884583-67884602 None:intergenic 20.0%
!! TTTCATTTACATTACTTACA+TGG + chr1_3:67885207-67885226 None:intergenic 20.0%
!!! TTAGAATTTGCTAAAGATAA+TGG - chr1_3:67885436-67885455 Msa0136090:intron 20.0%
!!! TTCATAAACAATGTTGTTTT+TGG + chr1_3:67885709-67885728 None:intergenic 20.0%
!!! AATTCAATTTTTTGGAGTAA+TGG + chr1_3:67886361-67886380 None:intergenic 20.0%
!!! GACACTTAAATTCAATTTTT+TGG + chr1_3:67886369-67886388 None:intergenic 20.0%
!! AAAAATTGAATTTAAGTGTC+AGG - chr1_3:67886369-67886388 Msa0136090:CDS 20.0%
!!! GGATTGATATACATTTTTTC+AGG - chr1_3:67884108-67884127 Msa0136090:CDS 25.0%
! GTCCCTATAAATGAAAAATA+AGG + chr1_3:67884493-67884512 None:intergenic 25.0%
! CATTTATAGGGACTAAATAT+AGG - chr1_3:67884500-67884519 Msa0136090:CDS 25.0%
! ATAAGAATTCAGAAACAACA+AGG + chr1_3:67884692-67884711 None:intergenic 25.0%
! AACCATTTACTAAAAAGGAA+TGG - chr1_3:67884824-67884843 Msa0136090:CDS 25.0%
! ATTAGAACGGATAATAAAGA+CGG - chr1_3:67884996-67885015 Msa0136090:CDS 25.0%
!!! ACCAGTATTGATTTGTAAAA+AGG - chr1_3:67885126-67885145 Msa0136090:CDS 25.0%
!! TCCTTTTTACAAATCAATAC+TGG + chr1_3:67885130-67885149 None:intergenic 25.0%
!! AGTCTTGATTTATAACTTGT+AGG - chr1_3:67885159-67885178 Msa0136090:intron 25.0%
! TAATGTAAATGAAACAGCAT+CGG - chr1_3:67885213-67885232 Msa0136090:intron 25.0%
! ATGAAAAATATCAACCTGAA+TGG - chr1_3:67885494-67885513 Msa0136090:CDS 25.0%
! TGAAAAATATCAACCTGAAT+GGG - chr1_3:67885495-67885514 Msa0136090:CDS 25.0%
!!! AGATTCAATTCTTTTTTTCG+CGG + chr1_3:67885554-67885573 None:intergenic 25.0%
! GAATTGAATCTGTTGTTAAA+AGG - chr1_3:67885563-67885582 Msa0136090:intron 25.0%
! TATCCTCATAAAAGTGAAAA+TGG + chr1_3:67885633-67885652 None:intergenic 25.0%
!!! TCAAGTTTTTTGAGATAGTT+GGG + chr1_3:67885778-67885797 None:intergenic 25.0%
!!! CTAGATTTTCTTGGTAATAT+TGG - chr1_3:67885901-67885920 Msa0136090:intron 25.0%
! GTAATATTGGATTTCCAATA+TGG - chr1_3:67885914-67885933 Msa0136090:intron 25.0%
! GTAGATATTTCATTACATCA+TGG - chr1_3:67886302-67886321 Msa0136090:CDS 25.0%
! TAATGATTGTGTTCTTTTGC+TGG + chr1_3:67884055-67884074 None:intergenic 30.0%
CTTGCTTCTATAAAAGAGAA+GGG + chr1_3:67884603-67884622 None:intergenic 30.0%
!! CTTTTTAGTAAATGGTTGCA+AGG + chr1_3:67884821-67884840 None:intergenic 30.0%
CTTGCAACCATTTACTAAAA+AGG - chr1_3:67884819-67884838 Msa0136090:CDS 30.0%
!! CTCCATTCCTTTTTAGTAAA+TGG + chr1_3:67884829-67884848 None:intergenic 30.0%
ATCAAGACAACAACATTGAA+AGG - chr1_3:67884854-67884873 Msa0136090:CDS 30.0%
TCAAGACAACAACATTGAAA+GGG - chr1_3:67884855-67884874 Msa0136090:CDS 30.0%
!! TAAAATTGGTTTGCTTACTG+TGG + chr1_3:67884956-67884975 None:intergenic 30.0%
TTAGAACGGATAATAAAGAC+GGG - chr1_3:67884997-67885016 Msa0136090:CDS 30.0%
CATACTTCGTACAAATAACA+TGG - chr1_3:67885067-67885086 Msa0136090:CDS 30.0%
AGTTGTGATAACACAAACAA+AGG - chr1_3:67885246-67885265 Msa0136090:intron 30.0%
CAATGTTTGTGAGAATATGA+TGG + chr1_3:67885300-67885319 None:intergenic 30.0%
TATAGTACAGAGAAAATTCC+AGG - chr1_3:67885382-67885401 Msa0136090:intron 30.0%
CAAATTCTAACATTGCATCT+GGG + chr1_3:67885426-67885445 None:intergenic 30.0%
GATAAATACTTAACCCATTC+AGG + chr1_3:67885511-67885530 None:intergenic 30.0%
! TCTGTTGTTAAAAGGTACAA+AGG - chr1_3:67885571-67885590 Msa0136090:intron 30.0%
!! TGTCCATTTTCACTTTTATG+AGG - chr1_3:67885627-67885646 Msa0136090:intron 30.0%
! CACTTTTATGAGGATAAACT+AGG - chr1_3:67885637-67885656 Msa0136090:intron 30.0%
!!! CTCAAGTTTTTTGAGATAGT+TGG + chr1_3:67885779-67885798 None:intergenic 30.0%
CAACTATCTCAAAAAACTTG+AGG - chr1_3:67885777-67885796 Msa0136090:intron 30.0%
! ACTGAAATGTTATTTGCCAT+AGG - chr1_3:67885823-67885842 Msa0136090:intron 30.0%
AGGAATCAATATACCTGATT+TGG + chr1_3:67885967-67885986 None:intergenic 30.0%
!! GTGATTCTTATTTGTTATGC+AGG - chr1_3:67886067-67886086 Msa0136090:CDS 30.0%
TGGACAATTTGATTCTTGAA+TGG - chr1_3:67886237-67886256 Msa0136090:CDS 30.0%
GGACAATTTGATTCTTGAAT+GGG - chr1_3:67886238-67886257 Msa0136090:CDS 30.0%
GACAATTTGATTCTTGAATG+GGG - chr1_3:67886239-67886258 Msa0136090:CDS 30.0%
!!! TTTTTGGAGTAATGGTTTGA+AGG + chr1_3:67886353-67886372 None:intergenic 30.0%
TTGAATTTAAGTGTCAGGAA+AGG - chr1_3:67886374-67886393 Msa0136090:CDS 30.0%
TGAATTTAAGTGTCAGGAAA+GGG - chr1_3:67886375-67886394 Msa0136090:CDS 30.0%
AGGATTTGATCACAACATAG+AGG - chr1_3:67883960-67883979 Msa0136090:CDS 35.0%
GGATTTGATCACAACATAGA+GGG - chr1_3:67883961-67883980 Msa0136090:CDS 35.0%
ATCTGGAAATGGAACAATTG+AGG - chr1_3:67883993-67884012 Msa0136090:CDS 35.0%
GAGGAACGTATATCAAATGA+TGG - chr1_3:67884012-67884031 Msa0136090:CDS 35.0%
!! TTTTATTTCCACATTCAGCC+TGG - chr1_3:67884226-67884245 Msa0136090:CDS 35.0%
! CGGCTTAAAATTACGTGTTT+TGG + chr1_3:67884563-67884582 None:intergenic 35.0%
GCTTGCTTCTATAAAAGAGA+AGG + chr1_3:67884604-67884623 None:intergenic 35.0%
! ACCTTGTACTTTTCCTGAAT+CGG - chr1_3:67884665-67884684 Msa0136090:CDS 35.0%
ATAATCCAAGTGTGGAACTA+TGG - chr1_3:67884782-67884801 Msa0136090:CDS 35.0%
TAATCCAAGTGTGGAACTAT+GGG - chr1_3:67884783-67884802 Msa0136090:CDS 35.0%
TTTGTAATACTGCCAACTTG+AGG - chr1_3:67884922-67884941 Msa0136090:CDS 35.0%
TAGAACGGATAATAAAGACG+GGG - chr1_3:67884998-67885017 Msa0136090:CDS 35.0%
TTGTCGATGCATAAGTTTAG+TGG + chr1_3:67885039-67885058 None:intergenic 35.0%
CTTTCACTAATGAGATGAAG+TGG - chr1_3:67885359-67885378 Msa0136090:intron 35.0%
GCAAATTCTAACATTGCATC+TGG + chr1_3:67885427-67885446 None:intergenic 35.0%
! ACAAAGGAGAATTGATAGCA+TGG - chr1_3:67885587-67885606 Msa0136090:intron 35.0%
! CAAAGGAGAATTGATAGCAT+GGG - chr1_3:67885588-67885607 Msa0136090:intron 35.0%
!!! GTTTTTTGAGATAGTTGGGT+GGG + chr1_3:67885774-67885793 None:intergenic 35.0%
!!! AGTTTTTTGAGATAGTTGGG+TGG + chr1_3:67885775-67885794 None:intergenic 35.0%
TTATTTGCCATAGGATTGCA+AGG - chr1_3:67885832-67885851 Msa0136090:intron 35.0%
!! TCATTTTACGTTTGAAGTCG+AGG + chr1_3:67885987-67886006 None:intergenic 35.0%
ATTATAATCCCTTGAACTGC+TGG + chr1_3:67886134-67886153 None:intergenic 35.0%
CAAGGGATTATAATGTTTGC+TGG - chr1_3:67886140-67886159 Msa0136090:intron 35.0%
AATTTCCAAACTACTCCAAC+TGG - chr1_3:67886206-67886225 Msa0136090:intron 35.0%
AATTCCTCTACTATCTGCTT+TGG + chr1_3:67886282-67886301 None:intergenic 35.0%
!! GGAGGCATTATAGTAAACTC+AGG - chr1_3:67883940-67883959 Msa0136090:CDS 40.0%
TTGATCACAACATAGAGGGT+TGG - chr1_3:67883965-67883984 Msa0136090:CDS 40.0%
CAAAAGGTTCAGCTAGAGAA+AGG - chr1_3:67884087-67884106 Msa0136090:CDS 40.0%
AATGGAAGTGAACTTGTGCA+TGG - chr1_3:67884297-67884316 Msa0136090:intron 40.0%
! ATCCATGCTTTGCTATCACA+TGG + chr1_3:67884326-67884345 None:intergenic 40.0%
TGATAGCAAAGCATGGATGT+TGG - chr1_3:67884328-67884347 Msa0136090:intron 40.0%
! GGATGTTGGTCTCTTCTAAA+AGG - chr1_3:67884342-67884361 Msa0136090:intron 40.0%
! TGTTGGTCTCTTCTAAAAGG+TGG - chr1_3:67884345-67884364 Msa0136090:intron 40.0%
! ACCGATTCAGGAAAAGTACA+AGG + chr1_3:67884669-67884688 None:intergenic 40.0%
! GTGGATTTTGTTCCTCAAGT+TGG + chr1_3:67884937-67884956 None:intergenic 40.0%
! GTAAATGAAACAGCATCGGA+AGG - chr1_3:67885217-67885236 Msa0136090:intron 40.0%
ACAAAGGCAGATTTCCCATT+TGG - chr1_3:67885262-67885281 Msa0136090:intron 40.0%
CAGATTTCCCATTTGGATGT+GGG - chr1_3:67885269-67885288 Msa0136090:intron 40.0%
! TCTCACAAACATTGACTACC+AGG - chr1_3:67885306-67885325 Msa0136090:intron 40.0%
! CAAACATTGACTACCAGGAA+TGG - chr1_3:67885311-67885330 Msa0136090:intron 40.0%
ATCTTGACACAAACCATTCC+TGG + chr1_3:67885327-67885346 None:intergenic 40.0%
! ATAGTGTAGTTTTCTTGGCC+TGG + chr1_3:67885403-67885422 None:intergenic 40.0%
! CTGGGATAGTGTAGTTTTCT+TGG + chr1_3:67885408-67885427 None:intergenic 40.0%
!! GATAATGGAATTTCTGTCCG+AGG - chr1_3:67885451-67885470 Msa0136090:intron 40.0%
! TCCGAGGTCATAACATTTTC+TGG - chr1_3:67885467-67885486 Msa0136090:intron 40.0%
CCCAGAAAATGTTATGACCT+CGG + chr1_3:67885471-67885490 None:intergenic 40.0%
! CCGAGGTCATAACATTTTCT+GGG - chr1_3:67885468-67885487 Msa0136090:intron 40.0%
CTTGAGGAGATTATGCAATC+TGG - chr1_3:67885793-67885812 Msa0136090:intron 40.0%
! AAAATGGCCTTGCAATCCTA+TGG + chr1_3:67885842-67885861 None:intergenic 40.0%
TCATGTAAGCAAGATTTGGC+TGG + chr1_3:67885873-67885892 None:intergenic 40.0%
AGCCAAATCTTGCTTACATG+AGG - chr1_3:67885872-67885891 Msa0136090:intron 40.0%
GACCTCATGTAAGCAAGATT+TGG + chr1_3:67885877-67885896 None:intergenic 40.0%
AATCTTGCTTACATGAGGTC+AGG - chr1_3:67885877-67885896 Msa0136090:intron 40.0%
! AGGTCAGGTCTAGATTTTCT+TGG - chr1_3:67885892-67885911 Msa0136090:intron 40.0%
!! CAATATACCTGATTTGGCTG+AGG + chr1_3:67885961-67885980 None:intergenic 40.0%
! ATGTTTTCGCAGTTACACGA+AGG - chr1_3:67886016-67886035 Msa0136090:CDS 40.0%
TTGATTCTTGAATGGGGAAG+TGG - chr1_3:67886245-67886264 Msa0136090:CDS 40.0%
TGATTCTTGAATGGGGAAGT+GGG - chr1_3:67886246-67886265 Msa0136090:CDS 40.0%
CTATCTGCTTTGGCTGTATA+AGG + chr1_3:67886272-67886291 None:intergenic 40.0%
! GAACCTCAGAGAGCACAATA+TGG - chr1_3:67883916-67883935 Msa0136090:CDS 45.0%
ATAGAGGGTTGGACAGTATC+TGG - chr1_3:67883976-67883995 Msa0136090:CDS 45.0%
GGTTGGACAGTATCTGGAAA+TGG - chr1_3:67883982-67884001 Msa0136090:CDS 45.0%
ACCTCGAAAAGAATCTCAGC+CGG + chr1_3:67884393-67884412 None:intergenic 45.0%
! GAAACAACAAGGACCGATTC+AGG + chr1_3:67884681-67884700 None:intergenic 45.0%
GCAGAGCAATAATCCAAGTG+TGG - chr1_3:67884774-67884793 Msa0136090:CDS 45.0%
TCAACCCATAGTTCCACACT+TGG + chr1_3:67884790-67884809 None:intergenic 45.0%
ACGGATAATAAAGACGGGGT+TGG - chr1_3:67885002-67885021 Msa0136090:CDS 45.0%
CGGATAATAAAGACGGGGTT+GGG - chr1_3:67885003-67885022 Msa0136090:CDS 45.0%
GCAGATTTCCCATTTGGATG+TGG - chr1_3:67885268-67885287 Msa0136090:intron 45.0%
GGTTCATCCCACATCCAAAT+GGG + chr1_3:67885279-67885298 None:intergenic 45.0%
TGGTTCATCCCACATCCAAA+TGG + chr1_3:67885280-67885299 None:intergenic 45.0%
!! TTGCAAGGCCATTTTGCAAG+TGG - chr1_3:67885847-67885866 Msa0136090:intron 45.0%
ATTTGGCTGAGGATCCAAAC+TGG + chr1_3:67885950-67885969 None:intergenic 45.0%
TTTGGATCCTCAGCCAAATC+AGG - chr1_3:67885951-67885970 Msa0136090:CDS 45.0%
TACTCTCATCCAGCAGTTCA+AGG - chr1_3:67886122-67886141 Msa0136090:intron 45.0%
ACTCTCATCCAGCAGTTCAA+GGG - chr1_3:67886123-67886142 Msa0136090:intron 45.0%
CTTGTCCAGTTGGAGTAGTT+TGG + chr1_3:67886214-67886233 None:intergenic 45.0%
TACTCCAACTGGACAAGTTG+TGG - chr1_3:67886217-67886236 Msa0136090:CDS 45.0%
TTGTCCACAACTTGTCCAGT+TGG + chr1_3:67886224-67886243 None:intergenic 45.0%
ACAGCCAAAGCAGATAGTAG+AGG - chr1_3:67886275-67886294 Msa0136090:CDS 45.0%
! TGTCAGGAAAGGGTTTTCAC+AGG - chr1_3:67886385-67886404 Msa0136090:CDS 45.0%
CCTCCATATTGTGCTCTCTG+AGG + chr1_3:67883922-67883941 None:intergenic 50.0%
! CCTCAGAGAGCACAATATGG+AGG - chr1_3:67883919-67883938 Msa0136090:CDS 50.0%
! CAGAGAGCACAATATGGAGG+AGG - chr1_3:67883922-67883941 Msa0136090:CDS 50.0%
GGAAGTGAACTTGTGCATGG+TGG - chr1_3:67884300-67884319 Msa0136090:intron 50.0%
GGCCATGTGATAGCAAAGCA+TGG - chr1_3:67884321-67884340 Msa0136090:intron 50.0%
CCTCGAAAAGAATCTCAGCC+GGG + chr1_3:67884392-67884411 None:intergenic 50.0%
AATAAAGACGGGGTTGGGAG+TGG - chr1_3:67885008-67885027 Msa0136090:CDS 50.0%
! TTGGCTGGCCACTTGCAAAA+TGG + chr1_3:67885858-67885877 None:intergenic 50.0%
CTGGCTTCTGTGAGCCATAT+TGG + chr1_3:67885931-67885950 None:intergenic 50.0%
ATGGCTCACAGAAGCCAGTT+TGG - chr1_3:67885933-67885952 Msa0136090:intron 50.0%
! GCAGGCAGAGTACTTTGAAG+AGG - chr1_3:67886085-67886104 Msa0136090:intron 50.0%
CTGTTGAAACCAGCTTGTGC+TGG + chr1_3:67886167-67886186 None:intergenic 50.0%
AGCTGAAGCCAGGCTGAATG+TGG + chr1_3:67884237-67884256 None:intergenic 55.0%
TCCTTCACTCAGCTGAAGCC+AGG + chr1_3:67884247-67884266 None:intergenic 55.0%
AGTCGCAAACTTCTCGAGCC+CGG - chr1_3:67884371-67884390 Msa0136090:intron 55.0%
! CCCGGCTGAGATTCTTTTCG+AGG - chr1_3:67884389-67884408 Msa0136090:CDS 55.0%
GCGGCTTTGCGCAATTCATC+GGG + chr1_3:67885535-67885554 None:intergenic 55.0%
CGCGGCTTTGCGCAATTCAT+CGG + chr1_3:67885536-67885555 None:intergenic 55.0%
TTTGCTGGTCCAGCACAAGC+TGG - chr1_3:67886155-67886174 Msa0136090:intron 55.0%
GCCTGGCTTCAGCTGAGTGA+AGG - chr1_3:67884243-67884262 Msa0136090:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67883910 67886436 67883910 ID=Msa0136090;Name=Msa0136090
chr1_3 mRNA 67883910 67886436 67883910 ID=Msa0136090-mRNA-1;Parent=Msa0136090;Name=Msa0136090-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0.5|0.2|1|1|1|5|0|541
chr1_3 exon 67886217 67886436 67886217 ID=Msa0136090-mRNA-1:exon:23353;Parent=Msa0136090-mRNA-1
chr1_3 exon 67885936 67886102 67885936 ID=Msa0136090-mRNA-1:exon:23352;Parent=Msa0136090-mRNA-1
chr1_3 exon 67885470 67885568 67885470 ID=Msa0136090-mRNA-1:exon:23351;Parent=Msa0136090-mRNA-1
chr1_3 exon 67884374 67885165 67884374 ID=Msa0136090-mRNA-1:exon:23350;Parent=Msa0136090-mRNA-1
chr1_3 exon 67883910 67884257 67883910 ID=Msa0136090-mRNA-1:exon:23349;Parent=Msa0136090-mRNA-1
chr1_3 CDS 67886217 67886436 67886217 ID=Msa0136090-mRNA-1:cds;Parent=Msa0136090-mRNA-1
chr1_3 CDS 67885936 67886102 67885936 ID=Msa0136090-mRNA-1:cds;Parent=Msa0136090-mRNA-1
chr1_3 CDS 67885470 67885568 67885470 ID=Msa0136090-mRNA-1:cds;Parent=Msa0136090-mRNA-1
chr1_3 CDS 67884374 67885165 67884374 ID=Msa0136090-mRNA-1:cds;Parent=Msa0136090-mRNA-1
chr1_3 CDS 67883910 67884257 67883910 ID=Msa0136090-mRNA-1:cds;Parent=Msa0136090-mRNA-1
Gene Sequence

>Msa0136090

ATGAAAGAACCTCAGAGAGCACAATATGGAGGAGGCATTATAGTAAACTCAGGATTTGATCACAACATAGAGGGTTGGACAGTATCTGGAAATGGAACAATTGAGGAACGTATATCAAATGATGGAAATAGATTCATTGTTGCCAGCAAAAGAACACAATCATTAGATAGTTTTTCACAAAAGGTTCAGCTAGAGAAAGGATTGATATACATTTTTTCAGCCTGGCTTCAGCTGAGTGAAGGAAGTGACACTGTTTCTGTTGTATTTAAAACAAATGGAAGTGAACTTGTGCATGGTGGCCATGTGATAGCAAAGCATGGATGTTGGTCTCTTCTAAAAGGTGGCATAGTCGCAAACTTCTCGAGCCCGGCTGAGATTCTTTTCGAGAGCAATAATCCAAGTGTGGAACTATGGGTTGATAGTGTGTCCTTGCAACCATTTACTAAAAAGGAATGGAGATCACATCAAGACAACAACATTGAAAGGGTACGTAAGAGTAGAGTGAGATTCCATGTAAGTAATGTAAATGAAACAGCATCGGAAGGAGCAACAGTTGTGATAACACAAACAAAGGCAGATTTCCCATTTGGATGTGGGATGAACCATCATATTCTCACAAACATTGACTACCAGGAATGGTTTGTGTCAAGATTCAAGTACACAACTTTCACTAATGAGATGAAGTGGTATAGTACAGAGAAAATTCCAGGCCAAGAAAACTACACTATCCCAGATGCAATGTTAGAATTTGCTAAAGATAATGGAATTTCTGTCCGAGGTCATAACATTTTCTGGGACGATGAAAAATATCAACCTGAATGGGTTAAGTATTTATCGCCCGATGAATTGCGCAAAGCCGCGAAAAAAAGAATTGAATCTGTTGTTAAAAGGTACAAAGGAGAATTGATAGCATGGGATGTAGTGAATGAAAATGTCCATTTTCACTTTTATGAGGATAAACTAGGTGAAAATGCATCTGAATTATACTATTTAAAAGCTCATGAGCTTGATCCAAAAACAACATTGTTTATGAATGAGTATAATACTATTGAATATAGTGGAGATAAAGTTGTTAGCCCACCCAACTATCTCAAAAAACTTGAGGAGATTATGCAATCTGGAGAAGCTACTGAAATGTTATTTGCCATAGGATTGCAAGGCCATTTTGCAAGTGGCCAGCCAAATCTTGCTTACATGAGGTCAGGTCTAGATTTTCTTGGTAATATTGGATTTCCAATATGGCTCACAGAAGCCAGTTTGGATCCTCAGCCAAATCAGGCAGAGTACTTTGAAGAGGTACTAAGAGAAGCATACTCTCATCCAGCAGTTCAAGGGATTATAATGTTTGCTGGTCCAGCACAAGCTGGTTTCAACAGTACACTTCTTGCAGATACAAATTTCCAAACTACTCCAACTGGACAAGTTGTGGACAATTTGATTCTTGAATGGGGAAGTGGGCCTTATACAGCCAAAGCAGATAGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTAACTGTTACACATCCTTCAAACCATTACTCCAAAAAATTGAATTTAAGTGTCAGGAAAGGGTTTTCACAGGAAAACGTCCATGTGAAAATGCATGCCTAA

Protein sequence

>Msa0136090

MKEPQRAQYGGGIIVNSGFDHNIEGWTVSGNGTIEERISNDGNRFIVASKRTQSLDSFSQKVQLEKGLIYIFSAWLQLSEGSDTVSVVFKTNGSELVHGGHVIAKHGCWSLLKGGIVANFSSPAEILFESNNPSVELWVDSVSLQPFTKKEWRSHQDNNIERVRKSRVRFHVSNVNETASEGATVVITQTKADFPFGCGMNHHILTNIDYQEWFVSRFKYTTFTNEMKWYSTEKIPGQENYTIPDAMLEFAKDNGISVRGHNIFWDDEKYQPEWVKYLSPDELRKAAKKRIESVVKRYKGELIAWDVVNENVHFHFYEDKLGENASELYYLKAHELDPKTTLFMNEYNTIEYSGDKVVSPPNYLKKLEEIMQSGEATEMLFAIGLQGHFASGQPNLAYMRSGLDFLGNIGFPIWLTEASLDPQPNQAEYFEEVLREAYSHPAVQGIIMFAGPAQAGFNSTLLADTNFQTTPTGQVVDNLILEWGSGPYTAKADSRGIVDISLHHGDYDVTVTHPSNHYSKKLNLSVRKGFSQENVHVKMHA*