Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186230 | XP_003627774.1 | 97.500 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186230 | sp|Q9SE45|ANXD3_ARATH | 55.975 | 318 | 137 | 2 | 1 | 315 | 1 | 318 | 7.83e-127 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611210 | Msa1186230 | 0.806583 | 7.666351e-50 | -8.615850e-47 |
| Msa0624900 | Msa1186230 | 0.802845 | 4.624031e-49 | -8.615850e-47 |
| Msa0697590 | Msa1186230 | 0.803062 | 4.169412e-49 | -8.615850e-47 |
| Msa0225860 | Msa1186230 | 0.806960 | 6.381885e-50 | -8.615850e-47 |
| Msa1068570 | Msa1186230 | 0.813360 | 2.662805e-51 | -8.615850e-47 |
| Msa0271540 | Msa1186230 | 0.800610 | 1.329528e-48 | -8.615850e-47 |
| Msa0279710 | Msa1186230 | 0.810100 | 1.363366e-50 | -8.615850e-47 |
| Msa0315690 | Msa1186230 | 0.801909 | 7.207117e-49 | -8.615850e-47 |
| Msa1186020 | Msa1186230 | 0.828430 | 9.030496e-55 | -8.615850e-47 |
| Msa1186230 | Msa1240450 | 0.893680 | 5.016551e-75 | -8.615850e-47 |
| Msa1186230 | Msa1321050 | 0.804072 | 2.575069e-49 | -8.615850e-47 |
| Msa1186230 | Msa1321060 | 0.861365 | 1.079663e-63 | -8.615850e-47 |
| Msa1186230 | Msa1392580 | 0.824349 | 8.471126e-54 | -8.615850e-47 |
| Msa0534720 | Msa1186230 | 0.808936 | 2.424255e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186230 | MtrunA17_Chr8g0352571 | 97.500 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0.0 | 647 |
| Msa1186230 | MtrunA17_Chr5g0425971 | 43.492 | 315 | 175 | 1 | 1 | 315 | 1 | 312 | 4.06e-83 | 254 |
| Msa1186230 | MtrunA17_Chr8g0382281 | 42.722 | 316 | 178 | 1 | 1 | 316 | 1 | 313 | 1.53e-79 | 244 |
| Msa1186230 | MtrunA17_Chr8g0352621 | 40.836 | 311 | 181 | 1 | 6 | 316 | 4 | 311 | 1.65e-78 | 242 |
| Msa1186230 | MtrunA17_Chr3g0083921 | 41.772 | 316 | 180 | 2 | 1 | 316 | 1 | 312 | 5.35e-78 | 240 |
| Msa1186230 | MtrunA17_Chr3g0083901 | 40.850 | 306 | 178 | 1 | 11 | 316 | 10 | 312 | 1.86e-77 | 239 |
| Msa1186230 | MtrunA17_Chr8g0393281 | 41.640 | 317 | 178 | 3 | 1 | 315 | 1 | 312 | 4.82e-77 | 238 |
| Msa1186230 | MtrunA17_Chr8g0352611 | 41.139 | 316 | 181 | 2 | 1 | 316 | 1 | 311 | 5.77e-76 | 235 |
| Msa1186230 | MtrunA17_Chr8g0352591 | 41.325 | 317 | 171 | 3 | 1 | 317 | 1 | 302 | 1.02e-73 | 229 |
| Msa1186230 | MtrunA17_Chr6g0479411 | 37.855 | 317 | 190 | 3 | 1 | 315 | 28 | 339 | 6.31e-67 | 213 |
| Msa1186230 | MtrunA17_Chr6g0479421 | 39.748 | 317 | 184 | 3 | 1 | 315 | 1 | 312 | 1.81e-66 | 211 |
| Msa1186230 | MtrunA17_Chr2g0293441 | 38.158 | 304 | 185 | 1 | 12 | 315 | 11 | 311 | 1.83e-66 | 211 |
| Msa1186230 | MtrunA17_Chr1g0162071 | 35.127 | 316 | 200 | 3 | 1 | 315 | 1 | 312 | 3.30e-65 | 207 |
| Msa1186230 | MtrunA17_Chr1g0210981 | 37.539 | 317 | 191 | 3 | 1 | 315 | 1 | 312 | 5.49e-64 | 204 |
| Msa1186230 | MtrunA17_Chr8g0352581 | 38.199 | 322 | 169 | 8 | 14 | 317 | 4 | 313 | 2.52e-60 | 195 |
| Msa1186230 | MtrunA17_Chr6g0479391 | 37.748 | 302 | 181 | 3 | 16 | 315 | 16 | 312 | 4.46e-59 | 192 |
| Msa1186230 | MtrunA17_Chr6g0461141 | 30.421 | 309 | 200 | 6 | 16 | 316 | 9 | 310 | 3.06e-36 | 132 |
| Msa1186230 | MtrunA17_Chr3g0084011 | 50.685 | 73 | 35 | 1 | 1 | 73 | 1 | 72 | 8.19e-16 | 72.0 |
| Msa1186230 | MtrunA17_Chr3g0084021 | 42.424 | 66 | 38 | 0 | 150 | 215 | 7 | 72 | 7.37e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186230 | AT2G38760.1 | 55.975 | 318 | 137 | 2 | 1 | 315 | 1 | 318 | 7.96e-128 | 368 |
| Msa1186230 | AT5G65020.1 | 44.340 | 318 | 173 | 2 | 1 | 317 | 1 | 315 | 7.64e-87 | 263 |
| Msa1186230 | AT5G10230.1 | 44.127 | 315 | 173 | 1 | 1 | 315 | 1 | 312 | 1.09e-85 | 261 |
| Msa1186230 | AT5G12380.1 | 44.444 | 306 | 167 | 1 | 12 | 317 | 11 | 313 | 2.16e-84 | 257 |
| Msa1186230 | AT5G10220.1 | 42.587 | 317 | 177 | 2 | 1 | 315 | 1 | 314 | 5.23e-82 | 251 |
| Msa1186230 | AT1G35720.1 | 41.875 | 320 | 176 | 3 | 1 | 316 | 1 | 314 | 4.39e-79 | 244 |
| Msa1186230 | AT5G65020.2 | 43.345 | 293 | 162 | 2 | 26 | 317 | 11 | 300 | 3.53e-76 | 236 |
| Msa1186230 | AT1G68090.1 | 34.177 | 316 | 204 | 2 | 1 | 315 | 1 | 313 | 2.32e-61 | 198 |
| Msa1186230 | AT2G38750.1 | 33.861 | 316 | 175 | 8 | 22 | 316 | 15 | 317 | 4.94e-45 | 156 |
| Msa1186230 | AT2G38750.2 | 33.974 | 312 | 172 | 8 | 26 | 316 | 2 | 300 | 5.45e-45 | 155 |
| Msa1186230 | AT1G68090.2 | 31.225 | 253 | 170 | 2 | 1 | 252 | 1 | 250 | 3.24e-41 | 144 |
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCTACAAGCAACTTTA+TGG | 0.111995 | 8_1:-24346088 | Msa1186230:CDS |
| CTATGCACCAACAGGTTATA+AGG | 0.231265 | 8_1:-24345254 | Msa1186230:intron |
| GATCAAACAGCTGCAGATTC+TGG | 0.323861 | 8_1:-24346757 | Msa1186230:CDS |
| TATTTGTAATCTTAATTTGC+TGG | 0.328649 | 8_1:-24344990 | Msa1186230:three_prime_UTR |
| CACTCTTAAATGTGGTAGTA+TGG | 0.329263 | 8_1:-24345861 | Msa1186230:CDS |
| ATGCAAAAGTTTCGCGGATC+TGG | 0.343027 | 8_1:+24346107 | None:intergenic |
| AAAGAGTTAATCTTGGTGTT+AGG | 0.350373 | 8_1:-24347698 | Msa1186230:CDS |
| GTGTGTGTGTTATTCTGAAT+TGG | 0.355855 | 8_1:-24344880 | Msa1186230:three_prime_UTR |
| TAGACGATGATCACTTTGTT+TGG | 0.364274 | 8_1:-24346153 | Msa1186230:CDS |
| GCGGATCTGGAAAACATTCC+TGG | 0.367782 | 8_1:+24346120 | None:intergenic |
| GTTATAAGGGATTCTATTGT+CGG | 0.406879 | 8_1:-24345240 | Msa1186230:CDS |
| TACCTTTGCGAAATGCTTCT+CGG | 0.408181 | 8_1:+24345825 | None:intergenic |
| ATATATTGAAGTTATTATCA+TGG | 0.421522 | 8_1:-24344762 | Msa1186230:three_prime_UTR |
| ACCTTTGCGAAATGCTTCTC+GGG | 0.421680 | 8_1:+24345826 | None:intergenic |
| AGACGTTCAGTGTCTGTGTT+AGG | 0.424878 | 8_1:+24348171 | None:intergenic |
| TATGCACCAACAGGTTATAA+GGG | 0.431985 | 8_1:-24345253 | Msa1186230:intron |
| ATTTGCAAGGGATGCATTGA+AGG | 0.432105 | 8_1:-24346793 | Msa1186230:CDS |
| GTCGAGTCCGAATCATTTGA+TGG | 0.438165 | 8_1:-24346718 | Msa1186230:CDS |
| CGTCTTCAATCTGAGCTCTC+TGG | 0.448509 | 8_1:-24347602 | Msa1186230:CDS |
| CGAATCATTTGATGGCAGTC+AGG | 0.458739 | 8_1:-24346710 | Msa1186230:CDS |
| TTTGCCATAAAGTTGCTTGT+AGG | 0.463446 | 8_1:+24346084 | None:intergenic |
| TCTCTTTGATTGCTCACTTG+AGG | 0.469042 | 8_1:-24346673 | Msa1186230:CDS |
| TTGCTGACTTTGCTAGGGAA+GGG | 0.469762 | 8_1:-24345066 | Msa1186230:CDS |
| TTAGGAGAAGGAACAATCTC+TGG | 0.472780 | 8_1:+24348189 | None:intergenic |
| TCATTTGATGGCAGTCAGGC+AGG | 0.480984 | 8_1:-24346706 | Msa1186230:CDS |
| AACAGAATGCTATAGTTCTC+TGG | 0.483320 | 8_1:-24346845 | Msa1186230:intron |
| CTGACTGCCATCAAATGATT+CGG | 0.489593 | 8_1:+24346711 | None:intergenic |
| GACTTGTGATCCACCAGAAA+GGG | 0.489831 | 8_1:-24346823 | Msa1186230:CDS |
| TGATAAAGTGACAGTAAACT+TGG | 0.490148 | 8_1:-24346230 | Msa1186230:CDS |
| CGTCTTAGAAATGCTTTCCA+AGG | 0.502094 | 8_1:-24348153 | Msa1186230:intron |
| AGGGATTCTATTGTCGGGCT+AGG | 0.506001 | 8_1:-24345234 | Msa1186230:CDS |
| GTGATGTATTAGCATCCCTT+TGG | 0.507732 | 8_1:+24345042 | None:intergenic |
| CATTGAAGGTTAAGAGGAAA+GGG | 0.507851 | 8_1:-24346779 | Msa1186230:CDS |
| AGTCTTGATGATGATGTCAT+TGG | 0.513392 | 8_1:-24345117 | Msa1186230:CDS |
| TTTGCTGACTTTGCTAGGGA+AGG | 0.520124 | 8_1:-24345067 | Msa1186230:CDS |
| GGGATGCATTGAAGGTTAAG+AGG | 0.521573 | 8_1:-24346785 | Msa1186230:CDS |
| CTTTGATTGCTCACTTGAGG+AGG | 0.526710 | 8_1:-24346670 | Msa1186230:CDS |
| AGATACCTCGGGTGACTACA+TGG | 0.528259 | 8_1:-24345094 | Msa1186230:CDS |
| TTATAAGGGATTCTATTGTC+GGG | 0.533935 | 8_1:-24345239 | Msa1186230:CDS |
| GGACTTGTGATCCACCAGAA+AGG | 0.540252 | 8_1:-24346824 | Msa1186230:CDS |
| GCATTGAAGGTTAAGAGGAA+AGG | 0.540378 | 8_1:-24346780 | Msa1186230:CDS |
| AAACTTGGAGGTTGCAAAGT+CGG | 0.547473 | 8_1:-24346215 | Msa1186230:CDS |
| TGGGCTTAGTAAGCTCCTAC+AGG | 0.549295 | 8_1:-24346255 | Msa1186230:CDS |
| AAATTGTTGTATAAATAAGA+AGG | 0.559863 | 8_1:-24344801 | Msa1186230:three_prime_UTR |
| TTGCTAGGGAAGGGACCAAA+GGG | 0.566608 | 8_1:-24345057 | Msa1186230:CDS |
| TTGTTTGGATACTTAGCACC+AGG | 0.574565 | 8_1:-24346138 | Msa1186230:CDS |
| AAAGGGATGCAAAATTTGCA+AGG | 0.580223 | 8_1:-24346806 | Msa1186230:CDS |
| TGTAGGATGCAAAAGTTTCG+CGG | 0.581239 | 8_1:+24346101 | None:intergenic |
| TTATGGCAAAACATTTGAAG+AGG | 0.586910 | 8_1:-24346071 | Msa1186230:intron |
| TTAAATTATGTTGTACATGT+TGG | 0.589905 | 8_1:-24344966 | Msa1186230:three_prime_UTR |
| TTTGCTAGGGAAGGGACCAA+AGG | 0.591319 | 8_1:-24345058 | Msa1186230:CDS |
| TCAGTGTCTGTGTTAGGAGA+AGG | 0.593736 | 8_1:+24348177 | None:intergenic |
| GACATAGAAATGCTCAACAA+AGG | 0.603561 | 8_1:-24347676 | Msa1186230:CDS |
| GATGTCATTGGAGATACCTC+GGG | 0.603827 | 8_1:-24345105 | Msa1186230:CDS |
| TAAAGTGACAGTAAACTTGG+AGG | 0.610874 | 8_1:-24346227 | Msa1186230:CDS |
| TTTGACATCACTCTTAAATG+TGG | 0.614354 | 8_1:-24345869 | Msa1186230:CDS |
| TGTCACTTTATCATGCCTGT+AGG | 0.623221 | 8_1:+24346240 | None:intergenic |
| TAACCTCAGAGCAGAATGAG+AGG | 0.628150 | 8_1:+24345011 | None:intergenic |
| AAGGGATGCAAAATTTGCAA+GGG | 0.631146 | 8_1:-24346805 | Msa1186230:CDS |
| CCCCGAGAAGCATTTCGCAA+AGG | 0.642453 | 8_1:-24345827 | Msa1186230:intron |
| CCTTTGCGAAATGCTTCTCG+GGG | 0.654248 | 8_1:+24345827 | None:intergenic |
| GAACCTCTCATTCTGCTCTG+AGG | 0.659776 | 8_1:-24345014 | Msa1186230:three_prime_UTR |
| TGATGTCATTGGAGATACCT+CGG | 0.661309 | 8_1:-24345106 | Msa1186230:CDS |
| TGTGAGTGGCTGAGAAACTG+AGG | 0.667057 | 8_1:+24346638 | None:intergenic |
| AAAATCCATGTAGTCACCCG+AGG | 0.694388 | 8_1:+24345089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTTCAATAATATAAAA+GGG | + | chr8_1:24345698-24345717 | None:intergenic | 10.0% |
| !! | TTGATTTCAATAATATAAAA+GGG | + | chr8_1:24345698-24345717 | None:intergenic | 10.0% |
| !!! | AAAAAACTAGAATTTAAAAT+TGG | + | chr8_1:24345893-24345912 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTATAAGCTTT+TGG | - | chr8_1:24346042-24346061 | Msa1186230:intron | 10.0% |
| !! | AAAAAAAAAATCATCTTTCA+TGG | - | chr8_1:24344819-24344838 | Msa1186230:three_prime_UTR | 15.0% |
| !!! | TTTTGTAGGTTTTTATTAAT+GGG | - | chr8_1:24345077-24345096 | Msa1186230:CDS | 15.0% |
| !!! | TTTTATTCCTTTTTTGTTTT+CGG | - | chr8_1:24345214-24345233 | Msa1186230:CDS | 15.0% |
| !!! | TTTTCAATGTTGTATTTTAT+TGG | - | chr8_1:24345530-24345549 | Msa1186230:intron | 15.0% |
| !!! | GTTGATTTCAATAATATAAA+AGG | + | chr8_1:24345699-24345718 | None:intergenic | 15.0% |
| !!! | GTTGATTTCAATAATATAAA+AGG | + | chr8_1:24345699-24345718 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTGTTACAAAAT+TGG | - | chr8_1:24345904-24345923 | Msa1186230:intron | 15.0% |
| !! | AGTTGAAATAAAAATGAAAA+CGG | - | chr8_1:24346681-24346700 | Msa1186230:CDS | 15.0% |
| !! | TTCTAACAAAAATTTCATTA+AGG | - | chr8_1:24347585-24347604 | Msa1186230:intron | 15.0% |
| !! | AAATTGTTGTATAAATAAGA+AGG | - | chr8_1:24348244-24348263 | Msa1186230:five_prime_UTR | 15.0% |
| !! | ATATATTGAAGTTATTATCA+TGG | - | chr8_1:24348283-24348302 | Msa1186230:five_prime_UTR | 15.0% |
| !!! | TTAAAAAACTGAACTTTTGT+AGG | - | chr8_1:24345063-24345082 | Msa1186230:CDS | 20.0% |
| !!! | CTTTTGTAGGTTTTTATTAA+TGG | - | chr8_1:24345076-24345095 | Msa1186230:CDS | 20.0% |
| !!! | GTAGGAATTTTTTTATTCAT+TGG | - | chr8_1:24345159-24345178 | Msa1186230:CDS | 20.0% |
| !!! | ATTTTTGTATCAATGGTTTT+TGG | - | chr8_1:24345254-24345273 | Msa1186230:intron | 20.0% |
| !! | CAATTTGTAGTAAAAAAACA+GGG | - | chr8_1:24345752-24345771 | Msa1186230:intron | 20.0% |
| !! | TTGAATTTGTGAAGAAAATT+AGG | + | chr8_1:24346729-24346748 | None:intergenic | 20.0% |
| !! | TTATTCATTCACTATGAATT+TGG | - | chr8_1:24347111-24347130 | Msa1186230:intron | 20.0% |
| !! | TAACAAAAATTTCATTAAGG+CGG | - | chr8_1:24347588-24347607 | Msa1186230:intron | 20.0% |
| !! | ATATAGCTTGAATGAAATTA+CGG | + | chr8_1:24347733-24347752 | None:intergenic | 20.0% |
| !!! | TATTTGTAATCTTAATTTGC+TGG | - | chr8_1:24348055-24348074 | Msa1186230:intron | 20.0% |
| !! | TTAAATTATGTTGTACATGT+TGG | - | chr8_1:24348079-24348098 | Msa1186230:intron | 20.0% |
| ! | ATTGAATCACAAAGATTTGT+AGG | - | chr8_1:24345141-24345160 | Msa1186230:CDS | 25.0% |
| !!! | TATGCTGATTTTTGTATCAA+TGG | - | chr8_1:24345247-24345266 | Msa1186230:intron | 25.0% |
| ! | AGATGAAAAAGAGTTAATCT+TGG | - | chr8_1:24345340-24345359 | Msa1186230:intron | 25.0% |
| ! | TCTCAAAAATGAAAAGTCAA+TGG | + | chr8_1:24345504-24345523 | None:intergenic | 25.0% |
| !!! | CCTGTTTTTTTACTACAAAT+TGG | + | chr8_1:24345754-24345773 | None:intergenic | 25.0% |
| ! | CCAATTTGTAGTAAAAAAAC+AGG | - | chr8_1:24345751-24345770 | Msa1186230:intron | 25.0% |
| ! | TTAAATACAGATAGAGCAAT+AGG | + | chr8_1:24345942-24345961 | None:intergenic | 25.0% |
| ! | CTTATAGGTGTAAAAATTGA+GGG | + | chr8_1:24346002-24346021 | None:intergenic | 25.0% |
| ! | ACTTATAGGTGTAAAAATTG+AGG | + | chr8_1:24346003-24346022 | None:intergenic | 25.0% |
| ! | ACATCATTATCTTGACTTAT+AGG | + | chr8_1:24346017-24346036 | None:intergenic | 25.0% |
| !! | TACATGATTTCTTTTATCTG+AGG | - | chr8_1:24346065-24346084 | Msa1186230:intron | 25.0% |
| ! | CATCATTACTTCAGAAAAAA+TGG | + | chr8_1:24346137-24346156 | None:intergenic | 25.0% |
| ! | GAACATCATTATACTAATTG+AGG | + | chr8_1:24347080-24347099 | None:intergenic | 25.0% |
| ! | TGAATGAATAAACAACATCT+TGG | + | chr8_1:24347102-24347121 | None:intergenic | 25.0% |
| ! | AGAAAACACATAATATGTGT+CGG | + | chr8_1:24347337-24347356 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTAGATTTTGAG+AGG | + | chr8_1:24347414-24347433 | None:intergenic | 25.0% |
| ! | TACATCATCTCAAAAAGAAA+AGG | + | chr8_1:24347511-24347530 | None:intergenic | 25.0% |
| ! | AAAATGAAATGCAATCATGT+TGG | + | chr8_1:24347687-24347706 | None:intergenic | 25.0% |
| ! | TTGAATGAAATTACGGTAAA+TGG | + | chr8_1:24347726-24347745 | None:intergenic | 25.0% |
| !! | TTTTCACAGAGAAAATATCA+AGG | + | chr8_1:24348217-24348236 | None:intergenic | 25.0% |
| GAACATACCGAAAACAAAAA+AGG | + | chr8_1:24345224-24345243 | None:intergenic | 30.0% | |
| !! | TTGATGTTGATGATGGTTAT+TGG | - | chr8_1:24345294-24345313 | Msa1186230:intron | 30.0% |
| GGTTATTGGAAAATTGATGT+AGG | - | chr8_1:24345308-24345327 | Msa1186230:intron | 30.0% | |
| TGGAAAATTGATGTAGGAAT+TGG | - | chr8_1:24345314-24345333 | Msa1186230:intron | 30.0% | |
| !! | AAAGAGTTAATCTTGGTGTT+AGG | - | chr8_1:24345347-24345366 | Msa1186230:intron | 30.0% |
| ! | TTGTATTTTATTGGTGCAAC+CGG | - | chr8_1:24345539-24345558 | Msa1186230:intron | 30.0% |
| TTGTGTAAAAAAACAGGGTA+AGG | - | chr8_1:24345618-24345637 | Msa1186230:intron | 30.0% | |
| AATAATATAAAAGGGCAACC+CGG | + | chr8_1:24345690-24345709 | None:intergenic | 30.0% | |
| TGTAGTAAAAAAACAGGGTA+AGG | - | chr8_1:24345757-24345776 | Msa1186230:intron | 30.0% | |
| AATAATATAAAAGGGCAACC+CGG | + | chr8_1:24345690-24345709 | None:intergenic | 30.0% | |
| TCGTAATGCTCAAATCAAAT+TGG | + | chr8_1:24345973-24345992 | None:intergenic | 30.0% | |
| TTATCTAAGTTTGTCTAGCT+AGG | - | chr8_1:24346474-24346493 | Msa1186230:intron | 30.0% | |
| TGTTCTTCAAACATATCATG+TGG | - | chr8_1:24346749-24346768 | Msa1186230:CDS | 30.0% | |
| GTTCTTCAAACATATCATGT+GGG | - | chr8_1:24346750-24346769 | Msa1186230:CDS | 30.0% | |
| TGATAAAGTGACAGTAAACT+TGG | - | chr8_1:24346815-24346834 | Msa1186230:CDS | 30.0% | |
| TTATGGCAAAACATTTGAAG+AGG | - | chr8_1:24346974-24346993 | Msa1186230:intron | 30.0% | |
| !! | ATTTGGCTGATTTTCTTTAC+AGG | - | chr8_1:24347128-24347147 | Msa1186230:intron | 30.0% |
| TTACAGGACATAAAAACTTG+TGG | - | chr8_1:24347144-24347163 | Msa1186230:intron | 30.0% | |
| GACATAAAAACTTGTGGTAA+AGG | - | chr8_1:24347150-24347169 | Msa1186230:intron | 30.0% | |
| TTTGACATCACTCTTAAATG+TGG | - | chr8_1:24347176-24347195 | Msa1186230:intron | 30.0% | |
| !! | CATTGAGAATTTAGCTTGTT+TGG | - | chr8_1:24347272-24347291 | Msa1186230:intron | 30.0% |
| !! | TCTACAATGAACTTTTTCCT+TGG | - | chr8_1:24347434-24347453 | Msa1186230:intron | 30.0% |
| CATCTCAAAAAGAAAAGGAA+GGG | + | chr8_1:24347506-24347525 | None:intergenic | 30.0% | |
| TCATCTCAAAAAGAAAAGGA+AGG | + | chr8_1:24347507-24347526 | None:intergenic | 30.0% | |
| GTTATAAGGGATTCTATTGT+CGG | - | chr8_1:24347805-24347824 | Msa1186230:intron | 30.0% | |
| TTATAAGGGATTCTATTGTC+GGG | - | chr8_1:24347806-24347825 | Msa1186230:intron | 30.0% | |
| !!! | ATTTTTTGCTGACTTTGCTA+GGG | - | chr8_1:24347974-24347993 | Msa1186230:intron | 30.0% |
| ! | GAGATTGTTGATGTTGATGA+TGG | - | chr8_1:24345287-24345306 | Msa1186230:intron | 35.0% |
| GACATAGAAATGCTCAACAA+AGG | - | chr8_1:24345369-24345388 | Msa1186230:intron | 35.0% | |
| TCACATGACAACAACTTTAC+CGG | + | chr8_1:24345561-24345580 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr8_1:24345562-24345581 | Msa1186230:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAAAC+AGG | - | chr8_1:24345612-24345631 | Msa1186230:intron | 35.0% | |
| GCCTCTTGTGTAAAAAAACA+GGG | - | chr8_1:24345613-24345632 | Msa1186230:intron | 35.0% | |
| !!! | ACCCTGTTTTTTTACACAAG+AGG | + | chr8_1:24345617-24345636 | None:intergenic | 35.0% |
| AACAGAATGCTATAGTTCTC+TGG | - | chr8_1:24346200-24346219 | Msa1186230:CDS | 35.0% | |
| AAAGGGATGCAAAATTTGCA+AGG | - | chr8_1:24346239-24346258 | Msa1186230:CDS | 35.0% | |
| AAGGGATGCAAAATTTGCAA+GGG | - | chr8_1:24346240-24346259 | Msa1186230:CDS | 35.0% | |
| CATTGAAGGTTAAGAGGAAA+GGG | - | chr8_1:24346266-24346285 | Msa1186230:intron | 35.0% | |
| !! | GGTGTTATGCAGATTTTAGT+GGG | - | chr8_1:24346771-24346790 | Msa1186230:CDS | 35.0% |
| TAAAGTGACAGTAAACTTGG+AGG | - | chr8_1:24346818-24346837 | Msa1186230:CDS | 35.0% | |
| TAGACGATGATCACTTTGTT+TGG | - | chr8_1:24346892-24346911 | Msa1186230:intron | 35.0% | |
| TTTGCCATAAAGTTGCTTGT+AGG | + | chr8_1:24346964-24346983 | None:intergenic | 35.0% | |
| CACTCTTAAATGTGGTAGTA+TGG | - | chr8_1:24347184-24347203 | Msa1186230:intron | 35.0% | |
| !! | GAACTTTTTCCTTGGAAAGA+TGG | - | chr8_1:24347442-24347461 | Msa1186230:intron | 35.0% |
| TATAATCGACCATCTTTCCA+AGG | + | chr8_1:24347454-24347473 | None:intergenic | 35.0% | |
| TATGCACCAACAGGTTATAA+GGG | - | chr8_1:24347792-24347811 | Msa1186230:intron | 35.0% | |
| TAGAATCCCTTATAACCTGT+TGG | + | chr8_1:24347801-24347820 | None:intergenic | 35.0% | |
| !! | AGTCTTGATGATGATGTCAT+TGG | - | chr8_1:24347928-24347947 | Msa1186230:intron | 35.0% |
| !!! | GATTTTTTGCTGACTTTGCT+AGG | - | chr8_1:24347973-24347992 | Msa1186230:intron | 35.0% |
| ! | GTGTGTGTGTTATTCTGAAT+TGG | - | chr8_1:24348165-24348184 | Msa1186230:CDS | 35.0% |
| TTAGGAGAAGGAACAATCTC+TGG | + | chr8_1:24344859-24344878 | None:intergenic | 40.0% | |
| CGTCTTAGAAATGCTTTCCA+AGG | - | chr8_1:24344892-24344911 | Msa1186230:three_prime_UTR | 40.0% | |
| ! | AATTTTGCATCCCTTTCTGG+TGG | + | chr8_1:24346235-24346254 | None:intergenic | 40.0% |
| ! | GCAAATTTTGCATCCCTTTC+TGG | + | chr8_1:24346238-24346257 | None:intergenic | 40.0% |
| ATTTGCAAGGGATGCATTGA+AGG | - | chr8_1:24346252-24346271 | Msa1186230:CDS | 40.0% | |
| GCATTGAAGGTTAAGAGGAA+AGG | - | chr8_1:24346265-24346284 | Msa1186230:CDS | 40.0% | |
| CTGACTGCCATCAAATGATT+CGG | + | chr8_1:24346337-24346356 | None:intergenic | 40.0% | |
| TCTCTTTGATTGCTCACTTG+AGG | - | chr8_1:24346372-24346391 | Msa1186230:intron | 40.0% | |
| !! | CATGTCCTTACTTTTGTGAG+TGG | + | chr8_1:24346424-24346443 | None:intergenic | 40.0% |
| GCTAAAGCTCTATAGTGTAG+CGG | - | chr8_1:24346522-24346541 | Msa1186230:intron | 40.0% | |
| !! | GGGTGTTATGCAGATTTTAG+TGG | - | chr8_1:24346770-24346789 | Msa1186230:CDS | 40.0% |
| !! | TGTCACTTTATCATGCCTGT+AGG | + | chr8_1:24346808-24346827 | None:intergenic | 40.0% |
| AAACTTGGAGGTTGCAAAGT+CGG | - | chr8_1:24346830-24346849 | Msa1186230:CDS | 40.0% | |
| TTGTTTGGATACTTAGCACC+AGG | - | chr8_1:24346907-24346926 | Msa1186230:intron | 40.0% | |
| TGTAGGATGCAAAAGTTTCG+CGG | + | chr8_1:24346947-24346966 | None:intergenic | 40.0% | |
| GCATCCTACAAGCAACTTTA+TGG | - | chr8_1:24346957-24346976 | Msa1186230:intron | 40.0% | |
| TACCTTTGCGAAATGCTTCT+CGG | + | chr8_1:24347223-24347242 | None:intergenic | 40.0% | |
| CTATGCACCAACAGGTTATA+AGG | - | chr8_1:24347791-24347810 | Msa1186230:intron | 40.0% | |
| TGATGTCATTGGAGATACCT+CGG | - | chr8_1:24347939-24347958 | Msa1186230:intron | 40.0% | |
| GTGATGTATTAGCATCCCTT+TGG | + | chr8_1:24348006-24348025 | None:intergenic | 40.0% | |
| TCAGTGTCTGTGTTAGGAGA+AGG | + | chr8_1:24344871-24344890 | None:intergenic | 45.0% | |
| AGACGTTCAGTGTCTGTGTT+AGG | + | chr8_1:24344877-24344896 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAACCT+TGG | + | chr8_1:24344912-24344931 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr8_1:24345566-24345585 | Msa1186230:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr8_1:24345606-24345625 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCATA+TGG | - | chr8_1:24345640-24345659 | Msa1186230:intron | 45.0% | |
| GCGTACAATACACCATATGG+TGG | - | chr8_1:24345643-24345662 | Msa1186230:intron | 45.0% | |
| GCTGCGTACAATACACCATA+TGG | - | chr8_1:24345640-24345659 | Msa1186230:intron | 45.0% | |
| GCGTACAATACACCATATGG+TGG | - | chr8_1:24345643-24345662 | Msa1186230:intron | 45.0% | |
| GACTTGTGATCCACCAGAAA+GGG | - | chr8_1:24346222-24346241 | Msa1186230:CDS | 45.0% | |
| GGGATGCATTGAAGGTTAAG+AGG | - | chr8_1:24346260-24346279 | Msa1186230:CDS | 45.0% | |
| GATCAAACAGCTGCAGATTC+TGG | - | chr8_1:24346288-24346307 | Msa1186230:intron | 45.0% | |
| GTCGAGTCCGAATCATTTGA+TGG | - | chr8_1:24346327-24346346 | Msa1186230:intron | 45.0% | |
| ! | CGAATCATTTGATGGCAGTC+AGG | - | chr8_1:24346335-24346354 | Msa1186230:intron | 45.0% |
| CTTTGATTGCTCACTTGAGG+AGG | - | chr8_1:24346375-24346394 | Msa1186230:intron | 45.0% | |
| CTCAGCCACTCACAAAAGTA+AGG | - | chr8_1:24346416-24346435 | Msa1186230:intron | 45.0% | |
| ATGCAAAAGTTTCGCGGATC+TGG | + | chr8_1:24346941-24346960 | None:intergenic | 45.0% | |
| ACCTTTGCGAAATGCTTCTC+GGG | + | chr8_1:24347222-24347241 | None:intergenic | 45.0% | |
| TCACACTTCTATGCACCAAC+AGG | - | chr8_1:24347783-24347802 | Msa1186230:intron | 45.0% | |
| GATGTCATTGGAGATACCTC+GGG | - | chr8_1:24347940-24347959 | Msa1186230:intron | 45.0% | |
| AAAATCCATGTAGTCACCCG+AGG | + | chr8_1:24347959-24347978 | None:intergenic | 45.0% | |
| !! | TTTGCTGACTTTGCTAGGGA+AGG | - | chr8_1:24347978-24347997 | Msa1186230:intron | 45.0% |
| !! | TTGCTGACTTTGCTAGGGAA+GGG | - | chr8_1:24347979-24347998 | Msa1186230:intron | 45.0% |
| TAACCTCAGAGCAGAATGAG+AGG | + | chr8_1:24348037-24348056 | None:intergenic | 45.0% | |
| CGTCTTCAATCTGAGCTCTC+TGG | - | chr8_1:24345443-24345462 | Msa1186230:intron | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr8_1:24345572-24345591 | Msa1186230:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr8_1:24345573-24345592 | Msa1186230:intron | 50.0% | |
| GGACTTGTGATCCACCAGAA+AGG | - | chr8_1:24346221-24346240 | Msa1186230:CDS | 50.0% | |
| ! | TCATTTGATGGCAGTCAGGC+AGG | - | chr8_1:24346339-24346358 | Msa1186230:intron | 50.0% |
| TGTGAGTGGCTGAGAAACTG+AGG | + | chr8_1:24346410-24346429 | None:intergenic | 50.0% | |
| TGGGCTTAGTAAGCTCCTAC+AGG | - | chr8_1:24346790-24346809 | Msa1186230:CDS | 50.0% | |
| GCGGATCTGGAAAACATTCC+TGG | + | chr8_1:24346928-24346947 | None:intergenic | 50.0% | |
| CCTTTGCGAAATGCTTCTCG+GGG | + | chr8_1:24347221-24347240 | None:intergenic | 50.0% | |
| AGGGATTCTATTGTCGGGCT+AGG | - | chr8_1:24347811-24347830 | Msa1186230:intron | 50.0% | |
| AGATACCTCGGGTGACTACA+TGG | - | chr8_1:24347951-24347970 | Msa1186230:intron | 50.0% | |
| TTTGCTAGGGAAGGGACCAA+AGG | - | chr8_1:24347987-24348006 | Msa1186230:intron | 50.0% | |
| TTGCTAGGGAAGGGACCAAA+GGG | - | chr8_1:24347988-24348007 | Msa1186230:intron | 50.0% | |
| GAACCTCTCATTCTGCTCTG+AGG | - | chr8_1:24348031-24348050 | Msa1186230:intron | 50.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr8_1:24345585-24345604 | Msa1186230:intron | 55.0% | |
| ! | CATATGGTGGAACCCCTTCC+CGG | - | chr8_1:24345656-24345675 | Msa1186230:intron | 55.0% |
| ! | CATATGGTGGAACCCCTTCC+CGG | - | chr8_1:24345656-24345675 | Msa1186230:intron | 55.0% |
| !! | CCCCGAGAAGCATTTCGCAA+AGG | - | chr8_1:24347218-24347237 | Msa1186230:intron | 55.0% |
| CGGGAAGGGGTTCCACCATA+TGG | + | chr8_1:24345658-24345677 | None:intergenic | 60.0% | |
| CCGGTACACTATCCGGGAAG+GGG | + | chr8_1:24345671-24345690 | None:intergenic | 60.0% | |
| CCCCTTCCCGGATAGTGTAC+CGG | - | chr8_1:24345668-24345687 | Msa1186230:intron | 60.0% | |
| CCCGGTACACTATCCGGGAA+GGG | + | chr8_1:24345672-24345691 | None:intergenic | 60.0% | |
| CCCTTCCCGGATAGTGTACC+GGG | - | chr8_1:24345669-24345688 | Msa1186230:intron | 60.0% | |
| ACCCGGTACACTATCCGGGA+AGG | + | chr8_1:24345673-24345692 | None:intergenic | 60.0% | |
| GGCAACCCGGTACACTATCC+GGG | + | chr8_1:24345677-24345696 | None:intergenic | 60.0% | |
| GGGCAACCCGGTACACTATC+CGG | + | chr8_1:24345678-24345697 | None:intergenic | 60.0% | |
| CGGGAAGGGGTTCCACCATA+TGG | + | chr8_1:24345658-24345677 | None:intergenic | 60.0% | |
| CCGGTACACTATCCGGGAAG+GGG | + | chr8_1:24345671-24345690 | None:intergenic | 60.0% | |
| CCCCTTCCCGGATAGTGTAC+CGG | - | chr8_1:24345668-24345687 | Msa1186230:intron | 60.0% | |
| CCCGGTACACTATCCGGGAA+GGG | + | chr8_1:24345672-24345691 | None:intergenic | 60.0% | |
| CCCTTCCCGGATAGTGTACC+GGG | - | chr8_1:24345669-24345688 | Msa1186230:intron | 60.0% | |
| ACCCGGTACACTATCCGGGA+AGG | + | chr8_1:24345673-24345692 | None:intergenic | 60.0% | |
| GGCAACCCGGTACACTATCC+GGG | + | chr8_1:24345677-24345696 | None:intergenic | 60.0% | |
| GGGCAACCCGGTACACTATC+CGG | + | chr8_1:24345678-24345697 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24344733 | 24348334 | 24344733 | ID=Msa1186230;Name=Msa1186230 |
| chr8_1 | mRNA | 24344733 | 24348334 | 24344733 | ID=Msa1186230-mRNA-1;Parent=Msa1186230;Name=Msa1186230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=105|1|1|1|1|1|6|317|321 |
| chr8_1 | exon | 24344733 | 24345262 | 24344733 | ID=Msa1186230-mRNA-1:exon:8880;Parent=Msa1186230-mRNA-1 |
| chr8_1 | exon | 24345828 | 24345917 | 24345828 | ID=Msa1186230-mRNA-1:exon:8879;Parent=Msa1186230-mRNA-1 |
| chr8_1 | exon | 24346072 | 24346284 | 24346072 | ID=Msa1186230-mRNA-1:exon:8878;Parent=Msa1186230-mRNA-1 |
| chr8_1 | exon | 24346635 | 24346862 | 24346635 | ID=Msa1186230-mRNA-1:exon:8877;Parent=Msa1186230-mRNA-1 |
| chr8_1 | exon | 24347592 | 24347737 | 24347592 | ID=Msa1186230-mRNA-1:exon:8876;Parent=Msa1186230-mRNA-1 |
| chr8_1 | exon | 24348154 | 24348334 | 24348154 | ID=Msa1186230-mRNA-1:exon:8875;Parent=Msa1186230-mRNA-1 |
| chr8_1 | five_prime_UTR | 24348230 | 24348334 | 24348230 | ID=Msa1186230-mRNA-1:five_prime_utr;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24348154 | 24348229 | 24348154 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24347592 | 24347737 | 24347592 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24346635 | 24346862 | 24346635 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24346072 | 24346284 | 24346072 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24345828 | 24345917 | 24345828 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | CDS | 24345050 | 24345262 | 24345050 | ID=Msa1186230-mRNA-1:cds;Parent=Msa1186230-mRNA-1 |
| chr8_1 | three_prime_UTR | 24344733 | 24345049 | 24344733 | ID=Msa1186230-mRNA-1:three_prime_utr;Parent=Msa1186230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
