Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240450 | XP_003627774.1 | 91.589 | 321 | 8 | 1 | 1 | 302 | 1 | 321 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240450 | sp|Q9SE45|ANXD3_ARATH | 53.145 | 318 | 127 | 3 | 1 | 296 | 1 | 318 | 1.09e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094780 | Msa1240450 | 0.802229 | 6.193361e-49 | -8.615850e-47 |
| Msa0624900 | Msa1240450 | 0.806331 | 8.664114e-50 | -8.615850e-47 |
| Msa0697590 | Msa1240450 | 0.823825 | 1.124290e-53 | -8.615850e-47 |
| Msa0734250 | Msa1240450 | 0.808381 | 3.185648e-50 | -8.615850e-47 |
| Msa0833650 | Msa1240450 | 0.803004 | 4.286810e-49 | -8.615850e-47 |
| Msa1240450 | Msa1320670 | 0.817440 | 3.294946e-52 | -8.615850e-47 |
| Msa1240450 | Msa1321060 | 0.894726 | 1.880214e-75 | -8.615850e-47 |
| Msa1240450 | Msa1392580 | 0.839505 | 1.522506e-57 | -8.615850e-47 |
| Msa0999680 | Msa1240450 | 0.807041 | 6.135477e-50 | -8.615850e-47 |
| Msa0267790 | Msa1240450 | 0.803786 | 2.952056e-49 | -8.615850e-47 |
| Msa0338340 | Msa1240450 | 0.800009 | 1.761775e-48 | -8.615850e-47 |
| Msa0361910 | Msa1240450 | 0.810612 | 1.057032e-50 | -8.615850e-47 |
| Msa1132840 | Msa1240450 | 0.801564 | 8.484172e-49 | -8.615850e-47 |
| Msa1184120 | Msa1240450 | 0.806343 | 8.613211e-50 | -8.615850e-47 |
| Msa1186020 | Msa1240450 | 0.816153 | 6.403490e-52 | -8.615850e-47 |
| Msa1186230 | Msa1240450 | 0.893680 | 5.016551e-75 | -8.615850e-47 |
| Msa0483100 | Msa1240450 | 0.818315 | 2.089951e-52 | -8.615850e-47 |
| Msa0526730 | Msa1240450 | 0.808731 | 2.682085e-50 | -8.615850e-47 |
| Msa0965290 | Msa1240450 | 0.804807 | 1.809635e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240450 | MtrunA17_Chr8g0352571 | 91.589 | 321 | 8 | 1 | 1 | 302 | 1 | 321 | 0.0 | 601 |
| Msa1240450 | MtrunA17_Chr5g0425971 | 39.683 | 315 | 168 | 2 | 1 | 296 | 1 | 312 | 5.96e-71 | 222 |
| Msa1240450 | MtrunA17_Chr8g0382281 | 40.506 | 316 | 166 | 2 | 1 | 297 | 1 | 313 | 2.36e-70 | 220 |
| Msa1240450 | MtrunA17_Chr8g0352621 | 38.585 | 311 | 169 | 2 | 6 | 297 | 4 | 311 | 2.62e-68 | 215 |
| Msa1240450 | MtrunA17_Chr8g0393281 | 39.432 | 317 | 166 | 5 | 1 | 296 | 1 | 312 | 7.03e-68 | 214 |
| Msa1240450 | MtrunA17_Chr8g0352611 | 38.924 | 316 | 169 | 3 | 1 | 297 | 1 | 311 | 2.55e-66 | 210 |
| Msa1240450 | MtrunA17_Chr3g0083901 | 37.908 | 306 | 168 | 2 | 11 | 297 | 10 | 312 | 4.61e-66 | 209 |
| Msa1240450 | MtrunA17_Chr8g0352591 | 38.889 | 306 | 175 | 3 | 1 | 298 | 1 | 302 | 2.28e-65 | 207 |
| Msa1240450 | MtrunA17_Chr3g0083921 | 37.975 | 316 | 173 | 3 | 1 | 297 | 1 | 312 | 9.25e-65 | 206 |
| Msa1240450 | MtrunA17_Chr1g0162071 | 35.127 | 316 | 181 | 5 | 1 | 296 | 1 | 312 | 1.75e-60 | 195 |
| Msa1240450 | MtrunA17_Chr6g0479411 | 35.962 | 317 | 177 | 5 | 1 | 296 | 28 | 339 | 1.39e-58 | 191 |
| Msa1240450 | MtrunA17_Chr6g0479421 | 37.224 | 317 | 173 | 5 | 1 | 296 | 1 | 312 | 2.54e-57 | 187 |
| Msa1240450 | MtrunA17_Chr2g0293441 | 36.184 | 304 | 172 | 2 | 12 | 296 | 11 | 311 | 2.70e-57 | 187 |
| Msa1240450 | MtrunA17_Chr1g0210981 | 34.385 | 317 | 182 | 4 | 1 | 296 | 1 | 312 | 4.96e-53 | 176 |
| Msa1240450 | MtrunA17_Chr8g0352581 | 35.714 | 322 | 158 | 10 | 14 | 298 | 4 | 313 | 1.14e-49 | 167 |
| Msa1240450 | MtrunA17_Chr6g0479391 | 35.099 | 302 | 170 | 4 | 16 | 296 | 16 | 312 | 4.94e-49 | 165 |
| Msa1240450 | MtrunA17_Chr6g0461141 | 29.450 | 309 | 184 | 8 | 16 | 297 | 9 | 310 | 1.27e-28 | 112 |
| Msa1240450 | MtrunA17_Chr3g0084011 | 50.685 | 73 | 35 | 1 | 1 | 73 | 1 | 72 | 1.01e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240450 | AT2G38760.1 | 53.145 | 318 | 127 | 3 | 1 | 296 | 1 | 318 | 1.11e-116 | 339 |
| Msa1240450 | AT5G65020.1 | 42.138 | 318 | 161 | 3 | 1 | 298 | 1 | 315 | 6.32e-77 | 238 |
| Msa1240450 | AT5G12380.1 | 42.810 | 306 | 153 | 3 | 12 | 298 | 11 | 313 | 1.79e-74 | 231 |
| Msa1240450 | AT5G10230.1 | 41.270 | 315 | 163 | 2 | 1 | 296 | 1 | 312 | 3.25e-74 | 231 |
| Msa1240450 | AT5G10220.1 | 40.379 | 317 | 165 | 3 | 1 | 296 | 1 | 314 | 1.30e-72 | 226 |
| Msa1240450 | AT1G35720.1 | 39.062 | 320 | 166 | 4 | 1 | 297 | 1 | 314 | 1.71e-67 | 213 |
| Msa1240450 | AT5G65020.2 | 40.956 | 293 | 150 | 3 | 26 | 298 | 11 | 300 | 3.27e-66 | 209 |
| Msa1240450 | AT1G68090.1 | 33.861 | 316 | 186 | 3 | 1 | 296 | 1 | 313 | 1.84e-56 | 185 |
| Msa1240450 | AT1G68090.2 | 31.225 | 253 | 151 | 3 | 1 | 233 | 1 | 250 | 7.89e-37 | 132 |
| Msa1240450 | AT2G38750.1 | 30.380 | 316 | 167 | 9 | 22 | 297 | 15 | 317 | 4.71e-34 | 127 |
| Msa1240450 | AT2G38750.2 | 30.449 | 312 | 164 | 9 | 26 | 297 | 2 | 300 | 7.45e-34 | 125 |
Find 62 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGCACCAACAGGTTATA+AGG | 0.231265 | 8_2:-22937743 | Msa1240450:intron |
| GATCAAACAGCTGCAGATTC+TGG | 0.323861 | 8_2:-22939612 | Msa1240450:CDS |
| GCATCCTACAAGCAACTCTA+TGG | 0.327186 | 8_2:-22938577 | Msa1240450:CDS |
| CACTCTTAAATGTGGTAGTA+TGG | 0.329263 | 8_2:-22938350 | Msa1240450:CDS |
| ATGCAAAAGTTTCGCGGATC+TGG | 0.343027 | 8_2:+22938596 | None:intergenic |
| AAAGAGTTAATCTTGGTGTT+AGG | 0.350373 | 8_2:-22940239 | Msa1240450:CDS |
| TAGACGATGATCACTTTGTT+TGG | 0.364274 | 8_2:-22938642 | Msa1240450:CDS |
| GCGGATCTGGAAAACATTCC+TGG | 0.367782 | 8_2:+22938609 | None:intergenic |
| GTGTGTGTGTTATTCTGAAT+TGG | 0.383155 | 8_2:-22937380 | Msa1240450:three_prime_UTR |
| GTTATAAGGGATTCTATTGT+CGG | 0.406879 | 8_2:-22937729 | Msa1240450:CDS |
| TACCTTTGCGAAATGCTTCT+CGG | 0.408181 | 8_2:+22938314 | None:intergenic |
| ACCTTTGCGAAATGCTTCTC+GGG | 0.421680 | 8_2:+22938315 | None:intergenic |
| TCTAAAATCACCAGAGAGTT+CGG | 0.421715 | 8_2:+22940133 | None:intergenic |
| AGACGTTCAGTGTCTGTGTT+AGG | 0.424878 | 8_2:+22940675 | None:intergenic |
| ATATATTGAAGTTATTATCA+TGG | 0.431393 | 8_2:-22937260 | Msa1240450:three_prime_UTR |
| TATGCACCAACAGGTTATAA+GGG | 0.431985 | 8_2:-22937742 | Msa1240450:intron |
| ATTTGCAAGGGATGCATTGA+AGG | 0.432105 | 8_2:-22939648 | Msa1240450:CDS |
| GTCGAGTCCGAATCATTTGA+TGG | 0.438165 | 8_2:-22939573 | Msa1240450:CDS |
| CGAATCATTTGATGGCAGTC+AGG | 0.458739 | 8_2:-22939565 | Msa1240450:CDS |
| GTGATGTATTAGTATCCCTT+TGG | 0.460356 | 8_2:+22937531 | None:intergenic |
| CGTCTTCAATCCGAACTCTC+TGG | 0.460875 | 8_2:-22940143 | Msa1240450:CDS |
| TCTCTTTGATTGCTCACTTG+AGG | 0.469042 | 8_2:-22939528 | Msa1240450:CDS |
| TTAGGAGAAGGAACAATCTC+TGG | 0.472780 | 8_2:+22940693 | None:intergenic |
| TTTGCCATAGAGTTGCTTGT+AGG | 0.478328 | 8_2:+22938573 | None:intergenic |
| TCATTTGATGGCAGTCAGGC+AGG | 0.480984 | 8_2:-22939561 | Msa1240450:CDS |
| AACAGAATGCTATAGTTCTC+TGG | 0.483320 | 8_2:-22939700 | Msa1240450:intron |
| CTGACTGCCATCAAATGATT+CGG | 0.489593 | 8_2:+22939566 | None:intergenic |
| GACTTGTGATCCACCAGAAA+GGG | 0.489831 | 8_2:-22939678 | Msa1240450:CDS |
| CGTCTTAGAAATGCTTTCCA+AGG | 0.502094 | 8_2:-22940657 | Msa1240450:intron |
| TTGCTGACTTTGCTAGGGAA+AGG | 0.503452 | 8_2:-22937555 | Msa1240450:CDS |
| AGGGATTCTATTGTCGGGCT+AGG | 0.506001 | 8_2:-22937723 | Msa1240450:CDS |
| CATTGAAGGTTAAGAGGAAA+GGG | 0.507851 | 8_2:-22939634 | Msa1240450:CDS |
| AGTCTTGATGATGATGTCAT+TGG | 0.513392 | 8_2:-22937606 | Msa1240450:CDS |
| GGGATGCATTGAAGGTTAAG+AGG | 0.521573 | 8_2:-22939640 | Msa1240450:CDS |
| CTTTGATTGCTCACTTGAGG+AGG | 0.526710 | 8_2:-22939525 | Msa1240450:CDS |
| AGATACCTCGGGTGACTACA+TGG | 0.528259 | 8_2:-22937583 | Msa1240450:CDS |
| TTATAAGGGATTCTATTGTC+GGG | 0.533935 | 8_2:-22937728 | Msa1240450:CDS |
| GGACTTGTGATCCACCAGAA+AGG | 0.540252 | 8_2:-22939679 | Msa1240450:CDS |
| GCATTGAAGGTTAAGAGGAA+AGG | 0.540378 | 8_2:-22939635 | Msa1240450:CDS |
| AAACTTGGAGGTTGCAAAGT+CGG | 0.547473 | 8_2:-22938704 | Msa1240450:intron |
| AAATTGTTGTATAAATAAGA+AGG | 0.559863 | 8_2:-22937299 | Msa1240450:three_prime_UTR |
| CTATGGCAAAACATTTGAAG+AGG | 0.571614 | 8_2:-22938560 | Msa1240450:intron |
| TAGAAATGCTCAACAAAGGA+AGG | 0.572954 | 8_2:-22940213 | Msa1240450:CDS |
| TTGTTTGGATACTTAGCACC+AGG | 0.574565 | 8_2:-22938627 | Msa1240450:CDS |
| TTGCTAGGGAAAGGACCAAA+GGG | 0.576100 | 8_2:-22937546 | Msa1240450:CDS |
| TGAAGTTATTATCATGGACA+TGG | 0.576923 | 8_2:-22937254 | Msa1240450:three_prime_UTR |
| AAAGGGATGCAAAATTTGCA+AGG | 0.580223 | 8_2:-22939661 | Msa1240450:CDS |
| TGTAGGATGCAAAAGTTTCG+CGG | 0.581239 | 8_2:+22938590 | None:intergenic |
| TCAGTGTCTGTGTTAGGAGA+AGG | 0.593736 | 8_2:+22940681 | None:intergenic |
| GACATAGAAATGCTCAACAA+AGG | 0.603561 | 8_2:-22940217 | Msa1240450:CDS |
| GATGTCATTGGAGATACCTC+GGG | 0.603827 | 8_2:-22937594 | Msa1240450:CDS |
| TTTGACATCACTCTTAAATG+TGG | 0.614354 | 8_2:-22938358 | Msa1240450:CDS |
| TTAAATCATGTTGTACATGT+TGG | 0.625903 | 8_2:-22937452 | Msa1240450:three_prime_UTR |
| TAACCTCAGAGCAGAATGAG+AGG | 0.628150 | 8_2:+22937497 | None:intergenic |
| AAGGGATGCAAAATTTGCAA+GGG | 0.631146 | 8_2:-22939660 | Msa1240450:CDS |
| TTTGCTAGGGAAAGGACCAA+AGG | 0.633041 | 8_2:-22937547 | Msa1240450:CDS |
| CCCCGAGAAGCATTTCGCAA+AGG | 0.642453 | 8_2:-22938316 | Msa1240450:intron |
| CCTTTGCGAAATGCTTCTCG+GGG | 0.654248 | 8_2:+22938316 | None:intergenic |
| GAACCTCTCATTCTGCTCTG+AGG | 0.659776 | 8_2:-22937500 | Msa1240450:three_prime_UTR |
| TGATGTCATTGGAGATACCT+CGG | 0.661309 | 8_2:-22937595 | Msa1240450:CDS |
| TGTGAGTGGCTGAGAAACTG+AGG | 0.667057 | 8_2:+22939493 | None:intergenic |
| AAAATCCATGTAGTCACCCG+AGG | 0.694388 | 8_2:+22937578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATGTTTTTATTAA+TGG | - | chr8_2:22937525-22937544 | Msa1240450:exon | 10.0% |
| !! | AAAAAAAAAATCATCTTTCA+TGG | - | chr8_2:22937308-22937327 | Msa1240450:three_prime_UTR | 15.0% |
| !!! | ATATCTTTTTTGTATTCTTT+TGG | - | chr8_2:22937670-22937689 | Msa1240450:CDS | 15.0% |
| !!! | GTTGATTTCAATAATATATA+CGG | + | chr8_2:22938005-22938024 | None:intergenic | 15.0% |
| !! | AAAAAACTAGAATTTCAAAT+TGG | + | chr8_2:22938060-22938079 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTGTTACAAAAT+TGG | - | chr8_2:22938071-22938090 | Msa1240450:intron | 15.0% |
| !!! | TCACATTTTTTTTTAAGAAA+TGG | + | chr8_2:22939083-22939102 | None:intergenic | 15.0% |
| !! | ATTTCTTAAAAAAAAATGTG+AGG | - | chr8_2:22939082-22939101 | Msa1240450:intron | 15.0% |
| !! | TTTCTTAAAAAAAAATGTGA+GGG | - | chr8_2:22939083-22939102 | Msa1240450:intron | 15.0% |
| !! | TTGTATAATTGAAAGAAAAA+AGG | + | chr8_2:22940042-22940061 | None:intergenic | 15.0% |
| !! | TTCTAATGAAAATTTCATTA+AGG | - | chr8_2:22940080-22940099 | Msa1240450:intron | 15.0% |
| !!! | ATTTTGACGAATATTTTTAT+AGG | - | chr8_2:22940150-22940169 | Msa1240450:CDS | 15.0% |
| !! | TTCAAAAAAATTAGAGTAAA+TGG | + | chr8_2:22940220-22940239 | None:intergenic | 15.0% |
| !! | AAATTGTTGTATAAATAAGA+AGG | - | chr8_2:22940739-22940758 | Msa1240450:five_prime_UTR | 15.0% |
| !! | ATATATTGAAGTTATTATCA+TGG | - | chr8_2:22940778-22940797 | Msa1240450:five_prime_UTR | 15.0% |
| !!! | GAGGAATTTTTTTTATTCAT+TGG | - | chr8_2:22937611-22937630 | Msa1240450:CDS | 20.0% |
| !! | TTAAATACAGATAGAGTAAT+AGG | + | chr8_2:22938109-22938128 | None:intergenic | 20.0% |
| !! | ACTTATAAGTGTAAAATTGA+GGG | + | chr8_2:22938169-22938188 | None:intergenic | 20.0% |
| !! | AACTTATAAGTGTAAAATTG+AGG | + | chr8_2:22938170-22938189 | None:intergenic | 20.0% |
| !! | CAAAAGCTTATAAAATTGTT+AGG | + | chr8_2:22938210-22938229 | None:intergenic | 20.0% |
| !!! | TTTGTACATGATTTCTTTTA+AGG | - | chr8_2:22938226-22938245 | Msa1240450:intron | 20.0% |
| !!! | ACTTAAATAAGAGACTTTTT+CGG | + | chr8_2:22938601-22938620 | None:intergenic | 20.0% |
| !! | TACAAAATTGTAGTTGAATT+AGG | - | chr8_2:22938743-22938762 | Msa1240450:intron | 20.0% |
| !! | ACAAAATTGTAGTTGAATTA+GGG | - | chr8_2:22938744-22938763 | Msa1240450:intron | 20.0% |
| !! | AACATTTCATATGTAAAATG+AGG | + | chr8_2:22938986-22939005 | None:intergenic | 20.0% |
| !!! | GTTTTTATTGTTTCTGAAAA+AGG | + | chr8_2:22939234-22939253 | None:intergenic | 20.0% |
| !! | TTATTCATTCACTATGAATT+TGG | - | chr8_2:22939615-22939634 | Msa1240450:CDS | 20.0% |
| !! | ATATATCATCCAAAAAGAAA+AGG | + | chr8_2:22940008-22940027 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTGGATGATATAT+AGG | - | chr8_2:22940008-22940027 | Msa1240450:intron | 20.0% |
| !! | TAATGAAAATTTCATTAAGG+TGG | - | chr8_2:22940083-22940102 | Msa1240450:intron | 20.0% |
| !!! | AAATGATTGCAATCTTATTT+CGG | - | chr8_2:22940265-22940284 | Msa1240450:intron | 20.0% |
| !!! | ACAATTTCTTTTAGTTTTCA+CGG | + | chr8_2:22940726-22940745 | None:intergenic | 20.0% |
| ! | GGTTATTGGAAAATTTATGT+AGG | - | chr8_2:22937760-22937779 | Msa1240450:intron | 25.0% |
| ! | TGGAAAATTTATGTAGGAAT+TGG | - | chr8_2:22937766-22937785 | Msa1240450:intron | 25.0% |
| ! | AGATGAAAAAGAGTTAATCT+TGG | - | chr8_2:22937792-22937811 | Msa1240450:intron | 25.0% |
| ! | TCTCAAAAATGAAAAGTCAA+TGG | + | chr8_2:22937956-22937975 | None:intergenic | 25.0% |
| !! | ATGCTGTTTAGTACAAAATA+CGG | - | chr8_2:22938712-22938731 | Msa1240450:intron | 25.0% |
| ! | TATGTTATGACATTTGATGT+GGG | - | chr8_2:22939254-22939273 | Msa1240450:intron | 25.0% |
| ! | TAATAAAGTGACAGTAAACT+TGG | - | chr8_2:22939319-22939338 | Msa1240450:intron | 25.0% |
| ! | GAACATCATTATAGTAATTG+AGG | + | chr8_2:22939584-22939603 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTAGATTTTGAG+AGG | + | chr8_2:22939916-22939935 | None:intergenic | 25.0% |
| ! | TTAAATCATGTTGTACATGT+TGG | - | chr8_2:22940586-22940605 | Msa1240450:intron | 25.0% |
| TGAATCACAAAGATTTGTAG+AGG | - | chr8_2:22937592-22937611 | Msa1240450:CDS | 30.0% | |
| !!! | TATGCTGATTTTTGTATCGA+TGG | - | chr8_2:22937699-22937718 | Msa1240450:CDS | 30.0% |
| !! | ATTTTTGTATCGATGGTTGT+TGG | - | chr8_2:22937706-22937725 | Msa1240450:CDS | 30.0% |
| !! | TTGATGTTGATGATGGTTAT+TGG | - | chr8_2:22937746-22937765 | Msa1240450:intron | 30.0% |
| !! | AAAGAGTTAATCTTGGTGTT+AGG | - | chr8_2:22937799-22937818 | Msa1240450:intron | 30.0% |
| TCATGATCTTGCATTGAAAA+TGG | + | chr8_2:22938298-22938317 | None:intergenic | 30.0% | |
| ! | AAGCCAGTGTTGTTAAATTA+GGG | - | chr8_2:22938637-22938656 | Msa1240450:CDS | 30.0% |
| AGTCATATATCTACTTCAGT+TGG | + | chr8_2:22938894-22938913 | None:intergenic | 30.0% | |
| AACTGAAGTAGATATATGAC+TGG | - | chr8_2:22938893-22938912 | Msa1240450:intron | 30.0% | |
| AAATGTTGCATAGTAACACA+AGG | - | chr8_2:22938999-22939018 | Msa1240450:intron | 30.0% | |
| CTATGTTATGACATTTGATG+TGG | - | chr8_2:22939253-22939272 | Msa1240450:intron | 30.0% | |
| TGAATGAATAAACAACGTCT+TGG | + | chr8_2:22939606-22939625 | None:intergenic | 30.0% | |
| !! | ATTTGGCTGATTTTCTTTTC+AGG | - | chr8_2:22939632-22939651 | Msa1240450:CDS | 30.0% |
| TTTCAGGACATAAAAACTTG+TGG | - | chr8_2:22939648-22939667 | Msa1240450:CDS | 30.0% | |
| TTTGACATCACTCTTAAATG+TGG | - | chr8_2:22939680-22939699 | Msa1240450:CDS | 30.0% | |
| !! | CATTGAGAATTTAGCTTGTT+TGG | - | chr8_2:22939776-22939795 | Msa1240450:intron | 30.0% |
| !! | GAACTTTTTCCTTAGAAAGA+TGG | - | chr8_2:22939944-22939963 | Msa1240450:intron | 30.0% |
| ! | TTTTTCCTTAGAAAGATGGT+CGG | - | chr8_2:22939948-22939967 | Msa1240450:intron | 30.0% |
| ! | TTTTCCCTTCCTTTTCTTTT+TGG | - | chr8_2:22939996-22940015 | Msa1240450:intron | 30.0% |
| TCATCCAAAAAGAAAAGGAA+GGG | + | chr8_2:22940003-22940022 | None:intergenic | 30.0% | |
| ATCATCCAAAAAGAAAAGGA+AGG | + | chr8_2:22940004-22940023 | None:intergenic | 30.0% | |
| AGATGAAATGTCATAATGTC+TGG | + | chr8_2:22940180-22940199 | None:intergenic | 30.0% | |
| GTTATAAGGGATTCTATTGT+CGG | - | chr8_2:22940309-22940328 | Msa1240450:intron | 30.0% | |
| TTATAAGGGATTCTATTGTC+GGG | - | chr8_2:22940310-22940329 | Msa1240450:intron | 30.0% | |
| !!! | ATTTTTTGCTGACTTTGCTA+GGG | - | chr8_2:22940478-22940497 | Msa1240450:intron | 30.0% |
| TGAAGTTATTATCATGGACA+TGG | - | chr8_2:22940784-22940803 | Msa1240450:five_prime_UTR | 30.0% | |
| AAAGAGAAAGAGAGAAACCT+TGG | + | chr8_2:22937401-22937420 | None:intergenic | 35.0% | |
| ! | GAGATTGTTGATGTTGATGA+TGG | - | chr8_2:22937739-22937758 | Msa1240450:intron | 35.0% |
| GACATAGAAATGCTCAACAA+AGG | - | chr8_2:22937821-22937840 | Msa1240450:intron | 35.0% | |
| TAGAAATGCTCAACAAAGGA+AGG | - | chr8_2:22937825-22937844 | Msa1240450:intron | 35.0% | |
| ! | TCTAAAATCACCAGAGAGTT+CGG | + | chr8_2:22937908-22937927 | None:intergenic | 35.0% |
| AACAGAATGCTATAGTTCTC+TGG | - | chr8_2:22938338-22938357 | Msa1240450:CDS | 35.0% | |
| AAAGGGATGCAAAATTTGCA+AGG | - | chr8_2:22938377-22938396 | Msa1240450:CDS | 35.0% | |
| AAGGGATGCAAAATTTGCAA+GGG | - | chr8_2:22938378-22938397 | Msa1240450:CDS | 35.0% | |
| CATTGAAGGTTAAGAGGAAA+GGG | - | chr8_2:22938404-22938423 | Msa1240450:intron | 35.0% | |
| ! | CTAATTTAACAACACTGGCT+TGG | + | chr8_2:22938638-22938657 | None:intergenic | 35.0% |
| ! | CAAGCCAGTGTTGTTAAATT+AGG | - | chr8_2:22938636-22938655 | Msa1240450:CDS | 35.0% |
| TAGCCCTAATTTAACAACAC+TGG | + | chr8_2:22938643-22938662 | None:intergenic | 35.0% | |
| TTGTCAATTGCGGAAAATAG+AGG | + | chr8_2:22938852-22938871 | None:intergenic | 35.0% | |
| CTCCAAAGTTTATTTCACGA+TGG | - | chr8_2:22938933-22938952 | Msa1240450:intron | 35.0% | |
| GACCATCGTGAAATAAACTT+TGG | + | chr8_2:22938938-22938957 | None:intergenic | 35.0% | |
| CATTTGTGATAGAGAGAAGA+TGG | - | chr8_2:22939189-22939208 | Msa1240450:intron | 35.0% | |
| !! | GGTGTTATGCAGATTTTAGT+GGG | - | chr8_2:22939275-22939294 | Msa1240450:intron | 35.0% |
| !! | TGTCACTTTATTATGCCTGT+AGG | + | chr8_2:22939312-22939331 | None:intergenic | 35.0% |
| TAAAGTGACAGTAAACTTGG+AGG | - | chr8_2:22939322-22939341 | Msa1240450:intron | 35.0% | |
| TAGACGATGATCACTTTGTT+TGG | - | chr8_2:22939396-22939415 | Msa1240450:intron | 35.0% | |
| CTATGGCAAAACATTTGAAG+AGG | - | chr8_2:22939478-22939497 | Msa1240450:intron | 35.0% | |
| GACATAAAAACTTGTGGTAG+AGG | - | chr8_2:22939654-22939673 | Msa1240450:CDS | 35.0% | |
| CACTCTTAAATGTGGTAGTA+TGG | - | chr8_2:22939688-22939707 | Msa1240450:CDS | 35.0% | |
| TCAGAAAACACAATCTGTGT+CGG | + | chr8_2:22939841-22939860 | None:intergenic | 35.0% | |
| TATAACCGACCATCTTTCTA+AGG | + | chr8_2:22939956-22939975 | None:intergenic | 35.0% | |
| GACATCAATAGTCGTTTCAT+AGG | - | chr8_2:22940124-22940143 | Msa1240450:intron | 35.0% | |
| TATGCACCAACAGGTTATAA+GGG | - | chr8_2:22940296-22940315 | Msa1240450:intron | 35.0% | |
| TAGAATCCCTTATAACCTGT+TGG | + | chr8_2:22940305-22940324 | None:intergenic | 35.0% | |
| !! | AGTCTTGATGATGATGTCAT+TGG | - | chr8_2:22940432-22940451 | Msa1240450:intron | 35.0% |
| !!! | GATTTTTTGCTGACTTTGCT+AGG | - | chr8_2:22940477-22940496 | Msa1240450:intron | 35.0% |
| GTGATGTATTAGTATCCCTT+TGG | + | chr8_2:22940510-22940529 | None:intergenic | 35.0% | |
| ! | GTGTGTGTGTTATTCTGAAT+TGG | - | chr8_2:22940658-22940677 | Msa1240450:CDS | 35.0% |
| TTAGGAGAAGGAACAATCTC+TGG | + | chr8_2:22937348-22937367 | None:intergenic | 40.0% | |
| CGTCTTAGAAATGCTTTCCA+AGG | - | chr8_2:22937381-22937400 | Msa1240450:three_prime_UTR | 40.0% | |
| ! | AATTTTGCATCCCTTTCTGG+TGG | + | chr8_2:22938373-22938392 | None:intergenic | 40.0% |
| ! | GCAAATTTTGCATCCCTTTC+TGG | + | chr8_2:22938376-22938395 | None:intergenic | 40.0% |
| ATTTGCAAGGGATGCATTGA+AGG | - | chr8_2:22938390-22938409 | Msa1240450:intron | 40.0% | |
| GCATTGAAGGTTAAGAGGAA+AGG | - | chr8_2:22938403-22938422 | Msa1240450:intron | 40.0% | |
| CTGACTGCCATCAAATGATT+CGG | + | chr8_2:22938475-22938494 | None:intergenic | 40.0% | |
| TCTCTTTGATTGCTCACTTG+AGG | - | chr8_2:22938510-22938529 | Msa1240450:intron | 40.0% | |
| !! | CATGTCCTTACTTTTGTGAG+TGG | + | chr8_2:22938562-22938581 | None:intergenic | 40.0% |
| AGTTTGTCTAGCTATGTCCA+AGG | - | chr8_2:22938618-22938637 | Msa1240450:CDS | 40.0% | |
| GCTATATAGTAACACTGCCT+TGG | + | chr8_2:22938802-22938821 | None:intergenic | 40.0% | |
| ! | TTTTCCGCAATTGACAACAC+TGG | - | chr8_2:22938855-22938874 | Msa1240450:intron | 40.0% |
| TGAACCAGTGTTGTCAATTG+CGG | + | chr8_2:22938862-22938881 | None:intergenic | 40.0% | |
| GACTGGTAGATGTGTCTAAA+AGG | - | chr8_2:22938910-22938929 | Msa1240450:intron | 40.0% | |
| TGTGATAGAGAGAAGATGGA+TGG | - | chr8_2:22939193-22939212 | Msa1240450:intron | 40.0% | |
| !! | GGGTGTTATGCAGATTTTAG+TGG | - | chr8_2:22939274-22939293 | Msa1240450:intron | 40.0% |
| AAACTTGGAGGTTGCAAAGT+CGG | - | chr8_2:22939334-22939353 | Msa1240450:intron | 40.0% | |
| TTGTTTGGATACTTAGCACC+AGG | - | chr8_2:22939411-22939430 | Msa1240450:intron | 40.0% | |
| TGTAGGATGCAAAAGTTTCG+CGG | + | chr8_2:22939451-22939470 | None:intergenic | 40.0% | |
| TTTGCCATAGAGTTGCTTGT+AGG | + | chr8_2:22939468-22939487 | None:intergenic | 40.0% | |
| TACCTTTGCGAAATGCTTCT+CGG | + | chr8_2:22939727-22939746 | None:intergenic | 40.0% | |
| GTTTACTTCTATGCACCAAC+AGG | - | chr8_2:22940287-22940306 | Msa1240450:intron | 40.0% | |
| CTATGCACCAACAGGTTATA+AGG | - | chr8_2:22940295-22940314 | Msa1240450:intron | 40.0% | |
| TGATGTCATTGGAGATACCT+CGG | - | chr8_2:22940443-22940462 | Msa1240450:intron | 40.0% | |
| TCAGTGTCTGTGTTAGGAGA+AGG | + | chr8_2:22937360-22937379 | None:intergenic | 45.0% | |
| AGACGTTCAGTGTCTGTGTT+AGG | + | chr8_2:22937366-22937385 | None:intergenic | 45.0% | |
| GACTTGTGATCCACCAGAAA+GGG | - | chr8_2:22938360-22938379 | Msa1240450:CDS | 45.0% | |
| GGGATGCATTGAAGGTTAAG+AGG | - | chr8_2:22938398-22938417 | Msa1240450:intron | 45.0% | |
| GATCAAACAGCTGCAGATTC+TGG | - | chr8_2:22938426-22938445 | Msa1240450:intron | 45.0% | |
| GTCGAGTCCGAATCATTTGA+TGG | - | chr8_2:22938465-22938484 | Msa1240450:intron | 45.0% | |
| ! | CGAATCATTTGATGGCAGTC+AGG | - | chr8_2:22938473-22938492 | Msa1240450:intron | 45.0% |
| CTTTGATTGCTCACTTGAGG+AGG | - | chr8_2:22938513-22938532 | Msa1240450:intron | 45.0% | |
| CTCAGCCACTCACAAAAGTA+AGG | - | chr8_2:22938554-22938573 | Msa1240450:intron | 45.0% | |
| GAGAAGATGGATGGAAAGCT+AGG | - | chr8_2:22939202-22939221 | Msa1240450:intron | 45.0% | |
| ATGCAAAAGTTTCGCGGATC+TGG | + | chr8_2:22939445-22939464 | None:intergenic | 45.0% | |
| GCATCCTACAAGCAACTCTA+TGG | - | chr8_2:22939461-22939480 | Msa1240450:intron | 45.0% | |
| ACCTTTGCGAAATGCTTCTC+GGG | + | chr8_2:22939726-22939745 | None:intergenic | 45.0% | |
| GATGTCATTGGAGATACCTC+GGG | - | chr8_2:22940444-22940463 | Msa1240450:intron | 45.0% | |
| AAAATCCATGTAGTCACCCG+AGG | + | chr8_2:22940463-22940482 | None:intergenic | 45.0% | |
| !! | TTGCTGACTTTGCTAGGGAA+AGG | - | chr8_2:22940483-22940502 | Msa1240450:intron | 45.0% |
| TTTGCTAGGGAAAGGACCAA+AGG | - | chr8_2:22940491-22940510 | Msa1240450:intron | 45.0% | |
| TTGCTAGGGAAAGGACCAAA+GGG | - | chr8_2:22940492-22940511 | Msa1240450:intron | 45.0% | |
| TAACCTCAGAGCAGAATGAG+AGG | + | chr8_2:22940544-22940563 | None:intergenic | 45.0% | |
| !!! | TTTTTTATGTTTTTATTAAT+GGG | - | chr8_2:22937526-22937545 | Msa1240450:exon | 5.0% |
| CGTCTTCAATCCGAACTCTC+TGG | - | chr8_2:22937895-22937914 | Msa1240450:intron | 50.0% | |
| GGACTTGTGATCCACCAGAA+AGG | - | chr8_2:22938359-22938378 | Msa1240450:CDS | 50.0% | |
| ! | TCATTTGATGGCAGTCAGGC+AGG | - | chr8_2:22938477-22938496 | Msa1240450:intron | 50.0% |
| TGTGAGTGGCTGAGAAACTG+AGG | + | chr8_2:22938548-22938567 | None:intergenic | 50.0% | |
| TGGGCTTAGTAAGCTCCTAC+AGG | - | chr8_2:22939294-22939313 | Msa1240450:intron | 50.0% | |
| GCGGATCTGGAAAACATTCC+TGG | + | chr8_2:22939432-22939451 | None:intergenic | 50.0% | |
| CCTTTGCGAAATGCTTCTCG+GGG | + | chr8_2:22939725-22939744 | None:intergenic | 50.0% | |
| AGGGATTCTATTGTCGGGCT+AGG | - | chr8_2:22940315-22940334 | Msa1240450:intron | 50.0% | |
| AGATACCTCGGGTGACTACA+TGG | - | chr8_2:22940455-22940474 | Msa1240450:intron | 50.0% | |
| GAACCTCTCATTCTGCTCTG+AGG | - | chr8_2:22940538-22940557 | Msa1240450:intron | 50.0% | |
| !! | CCCCGAGAAGCATTTCGCAA+AGG | - | chr8_2:22939722-22939741 | Msa1240450:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 22937222 | 22940838 | 22937222 | ID=Msa1240450;Name=Msa1240450 |
| chr8_2 | mRNA | 22937222 | 22940838 | 22937222 | ID=Msa1240450-mRNA-1;Parent=Msa1240450;Name=Msa1240450-mRNA-1;_AED=0.15;_eAED=0.15;_QI=105|0.8|0.83|1|0.8|0.83|6|317|302 |
| chr8_2 | exon | 22937222 | 22937751 | 22937222 | ID=Msa1240450-mRNA-1:exon:8211;Parent=Msa1240450-mRNA-1 |
| chr8_2 | exon | 22938317 | 22938406 | 22938317 | ID=Msa1240450-mRNA-1:exon:8210;Parent=Msa1240450-mRNA-1 |
| chr8_2 | exon | 22938561 | 22938716 | 22938561 | ID=Msa1240450-mRNA-1:exon:8209;Parent=Msa1240450-mRNA-1 |
| chr8_2 | exon | 22939490 | 22939717 | 22939490 | ID=Msa1240450-mRNA-1:exon:8208;Parent=Msa1240450-mRNA-1 |
| chr8_2 | exon | 22940133 | 22940278 | 22940133 | ID=Msa1240450-mRNA-1:exon:8207;Parent=Msa1240450-mRNA-1 |
| chr8_2 | exon | 22940658 | 22940838 | 22940658 | ID=Msa1240450-mRNA-1:exon:8206;Parent=Msa1240450-mRNA-1 |
| chr8_2 | five_prime_UTR | 22940734 | 22940838 | 22940734 | ID=Msa1240450-mRNA-1:five_prime_utr;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22940658 | 22940733 | 22940658 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22940133 | 22940278 | 22940133 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22939490 | 22939717 | 22939490 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22938561 | 22938716 | 22938561 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22938317 | 22938406 | 22938317 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | CDS | 22937539 | 22937751 | 22937539 | ID=Msa1240450-mRNA-1:cds;Parent=Msa1240450-mRNA-1 |
| chr8_2 | three_prime_UTR | 22937222 | 22937538 | 22937222 | ID=Msa1240450-mRNA-1:three_prime_utr;Parent=Msa1240450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
