Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279710 | KEH37091.1 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279710 | A0A072V637 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103250 | Msa0279710 | 0.812412 | 4.294881e-51 | -8.615850e-47 |
| Msa0106620 | Msa0279710 | 0.815923 | 7.209637e-52 | -8.615850e-47 |
| Msa0106710 | Msa0279710 | 0.807664 | 4.525999e-50 | -8.615850e-47 |
| Msa0131330 | Msa0279710 | 0.800231 | 1.587827e-48 | -8.615850e-47 |
| Msa0188150 | Msa0279710 | 0.816100 | 6.581249e-52 | -8.615850e-47 |
| Msa0225860 | Msa0279710 | 0.809940 | 1.476138e-50 | -8.615850e-47 |
| Msa0241630 | Msa0279710 | 0.928439 | 2.881791e-92 | -8.615850e-47 |
| Msa0278450 | Msa0279710 | 0.818830 | 1.596945e-52 | -8.615850e-47 |
| Msa0279710 | Msa0300320 | 0.802063 | 6.701637e-49 | -8.615850e-47 |
| Msa0279710 | Msa0315690 | 0.810980 | 8.799967e-51 | -8.615850e-47 |
| Msa0279710 | Msa0322560 | 0.905154 | 5.792519e-80 | -8.615850e-47 |
| Msa0279710 | Msa0337700 | 0.810318 | 1.223616e-50 | -8.615850e-47 |
| Msa0279710 | Msa0521670 | 0.806438 | 8.224608e-50 | -8.615850e-47 |
| Msa0279710 | Msa0534720 | 0.801840 | 7.447487e-49 | -8.615850e-47 |
| Msa0279710 | Msa0590830 | 0.809496 | 1.838998e-50 | -8.615850e-47 |
| Msa0279710 | Msa0624900 | 0.805459 | 1.321165e-49 | -8.615850e-47 |
| Msa0279710 | Msa0664150 | 0.810400 | 1.174426e-50 | -8.615850e-47 |
| Msa0279710 | Msa0797250 | 0.809176 | 2.153692e-50 | -8.615850e-47 |
| Msa0279710 | Msa0928130 | 0.803622 | 3.192976e-49 | -8.615850e-47 |
| Msa0279710 | Msa1044470 | 0.801142 | 1.035182e-48 | -8.615850e-47 |
| Msa0279710 | Msa1101090 | 0.810360 | 1.198246e-50 | -8.615850e-47 |
| Msa0279710 | Msa1145810 | 0.814538 | 1.464058e-51 | -8.615850e-47 |
| Msa0279710 | Msa1155170 | -0.814039 | 1.887254e-51 | -8.615850e-47 |
| Msa0279710 | Msa1170350 | 0.801067 | 1.072291e-48 | -8.615850e-47 |
| Msa0279710 | Msa1186020 | 0.824197 | 9.196846e-54 | -8.615850e-47 |
| Msa0279710 | Msa1186230 | 0.810100 | 1.363366e-50 | -8.615850e-47 |
| Msa0279710 | Msa1219000 | 0.822138 | 2.780703e-53 | -8.615850e-47 |
| Msa0279710 | Msa1332760 | 0.814583 | 1.431099e-51 | -8.615850e-47 |
| Msa0279710 | Msa1345810 | 0.806276 | 8.898326e-50 | -8.615850e-47 |
| Msa0279710 | Msa1365610 | 0.803035 | 4.224862e-49 | -8.615850e-47 |
| Msa0279710 | Msa1392580 | 0.807250 | 5.540659e-50 | -8.615850e-47 |
| Msa0279710 | Msa1440310 | 0.816545 | 5.232598e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279710 | MtrunA17_Chr2g0293221 | 94.737 | 380 | 19 | 1 | 1 | 380 | 1 | 379 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279710 | AT1G19980.1 | 33.957 | 374 | 191 | 9 | 14 | 377 | 9 | 336 | 5.79e-56 | 187 |
Find 74 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGTGCAACGATTTAAAA+AGG | 0.174149 | 2_3:+13777301 | None:intergenic |
| GTCTCTGTGGTGGGAATAAT+TGG | 0.175468 | 2_3:+13776472 | None:intergenic |
| GTGGAATCAATTTAATAAAA+TGG | 0.179907 | 2_3:-13777573 | Msa0279710:CDS |
| CAAAACTAAAGTCATCTTTA+AGG | 0.195780 | 2_3:-13776417 | Msa0279710:CDS |
| TACCCTGCTCAGTTCATCTT+TGG | 0.230573 | 2_3:+13777670 | None:intergenic |
| TTCTGATATTAAACGTTATA+AGG | 0.239982 | 2_3:-13779081 | Msa0279710:CDS |
| CTTAAAGATGACTTTAGTTT+TGG | 0.240955 | 2_3:+13776418 | None:intergenic |
| AAATTTCAACGGTCGACTTT+TGG | 0.277740 | 2_3:+13779371 | None:intergenic |
| TCTACGGCGTTTGAAGGTTT+TGG | 0.295363 | 2_3:+13779245 | None:intergenic |
| CAAACTACTCTCTAGCTAAA+AGG | 0.299294 | 2_3:+13776075 | None:intergenic |
| AGAAAGTAAAGTAGCTGATA+TGG | 0.308879 | 2_3:-13777414 | Msa0279710:CDS |
| GCAGTCTGAAAATATTAAAA+AGG | 0.342062 | 2_3:-13777456 | Msa0279710:CDS |
| GTCAGGACTCTCAACGGAAT+TGG | 0.342907 | 2_3:-13777360 | Msa0279710:CDS |
| ACTGTTCTCTTCCAACTTCA+AGG | 0.343289 | 2_3:-13776443 | Msa0279710:CDS |
| AATCTGTAGAGCGTGGAAAT+TGG | 0.346900 | 2_3:-13779223 | Msa0279710:CDS |
| GGTTCAGATGATGAAGAATC+AGG | 0.362544 | 2_3:-13779180 | Msa0279710:CDS |
| GTGAGCTTTCTGTTTGGAAT+AGG | 0.362590 | 2_3:-13776166 | Msa0279710:three_prime_UTR |
| AGTAGATATTATTGTGTGTT+TGG | 0.367439 | 2_3:-13776351 | Msa0279710:three_prime_UTR |
| AAAACATACTTCTCCATTCA+AGG | 0.368522 | 2_3:+13777875 | None:intergenic |
| ATCTGTAGAGCGTGGAAATT+GGG | 0.376472 | 2_3:-13779222 | Msa0279710:CDS |
| AATACAAGACTGAGTGTGTT+TGG | 0.381842 | 2_3:+13776233 | None:intergenic |
| AGTTCATCTTTGGTTTCATC+AGG | 0.393750 | 2_3:+13777680 | None:intergenic |
| AAGTTGGAAGAGAACAGTTT+GGG | 0.411264 | 2_3:+13776448 | None:intergenic |
| AGAGAGTACAAAGGATGATT+TGG | 0.418152 | 2_3:-13777937 | Msa0279710:CDS |
| GAAGTTGGAAGAGAACAGTT+TGG | 0.431216 | 2_3:+13776447 | None:intergenic |
| CTCTTGCCAGTATCCTTCAA+TGG | 0.432868 | 2_3:+13777770 | None:intergenic |
| CGCATCGTGTGATGCAGAAT+AGG | 0.438445 | 2_3:+13779281 | None:intergenic |
| TAAACAAGAAGAAGTAGAAA+AGG | 0.440876 | 2_3:-13777522 | Msa0279710:CDS |
| GGAACGCCATTGAAGGATAC+TGG | 0.442386 | 2_3:-13777776 | Msa0279710:CDS |
| TATCCTTCAATGGCGTTCCT+TGG | 0.442878 | 2_3:+13777780 | None:intergenic |
| ATCCACAAATTTCTCAGAAA+AGG | 0.443545 | 2_3:-13777177 | Msa0279710:intron |
| CTGGAAAAGTTGAGAGTAGC+AGG | 0.443901 | 2_3:-13777265 | Msa0279710:CDS |
| ACAGATTCTACGGCGTTTGA+AGG | 0.453164 | 2_3:+13779239 | None:intergenic |
| AGCTAAGGCTGATTTGATGA+TGG | 0.458362 | 2_3:-13778904 | Msa0279710:CDS |
| TGATTAGTGAGCTTTCTGTT+TGG | 0.467706 | 2_3:-13776172 | Msa0279710:three_prime_UTR |
| TTCTGAGAAATTTGTGGATG+TGG | 0.488850 | 2_3:+13777181 | None:intergenic |
| TATTGTGTGTTTGGAACCAT+CGG | 0.490823 | 2_3:-13776342 | Msa0279710:three_prime_UTR |
| TGATGTTTGAAGAGAAGAAA+CGG | 0.503982 | 2_3:-13778938 | Msa0279710:CDS |
| CTTCTTCTTCCCACTACTTG+AGG | 0.508521 | 2_3:+13777736 | None:intergenic |
| AAACCAAAGATGAACTGAGC+AGG | 0.509542 | 2_3:-13777673 | Msa0279710:CDS |
| TCTCTGTGGTGGGAATAATT+GGG | 0.509585 | 2_3:+13776473 | None:intergenic |
| AAGAAAGGAACCTCAAGTAG+TGG | 0.509613 | 2_3:-13777746 | Msa0279710:CDS |
| GAGTACAAAGGATGATTTGG+AGG | 0.515610 | 2_3:-13777934 | Msa0279710:CDS |
| TCTTGTATTTGTTTATTGCA+TGG | 0.516464 | 2_3:-13776219 | Msa0279710:three_prime_UTR |
| GGACCAAGGAACGCCATTGA+AGG | 0.522380 | 2_3:-13777783 | Msa0279710:CDS |
| AAAAGAAGCTTGAAGAGGAA+AGG | 0.524428 | 2_3:-13776499 | Msa0279710:CDS |
| TACATAATTCAGCTCAAAAG+TGG | 0.525721 | 2_3:+13776107 | None:intergenic |
| AAACATACTTGTTTCTAGCA+TGG | 0.526753 | 2_3:-13777486 | Msa0279710:CDS |
| GATGTGGAAGCATGTTCATC+AGG | 0.527344 | 2_3:+13777197 | None:intergenic |
| GCTAAGGCTGATTTGATGAT+GGG | 0.535120 | 2_3:-13778903 | Msa0279710:CDS |
| TCCACGCTCTACAGATTCTA+CGG | 0.536952 | 2_3:+13779229 | None:intergenic |
| AGATTAAACAAGGAAATGTC+AGG | 0.539359 | 2_3:-13777377 | Msa0279710:CDS |
| GATACTGGCAAGAGGAAGAA+AGG | 0.541904 | 2_3:-13777761 | Msa0279710:CDS |
| ACGGTTGCTTGAAGAAGCTA+AGG | 0.550968 | 2_3:-13778919 | Msa0279710:CDS |
| AAAATTGCAGAATCAACGCT+GGG | 0.563347 | 2_3:-13779105 | Msa0279710:CDS |
| TAAAATTGCAGAATCAACGC+TGG | 0.563506 | 2_3:-13779106 | Msa0279710:CDS |
| TTGAGAAAGGTAATCAAACC+CGG | 0.569015 | 2_3:+13777902 | None:intergenic |
| AGAAAGGAACCTCAAGTAGT+GGG | 0.601571 | 2_3:-13777745 | Msa0279710:CDS |
| AGGAGAAAAGAAGCTTGAAG+AGG | 0.617154 | 2_3:-13776504 | Msa0279710:CDS |
| AAGAAGAACTAAAATTTCAA+CGG | 0.620592 | 2_3:+13779360 | None:intergenic |
| AGTTTGGGAGTCTCTGTGGT+GGG | 0.621503 | 2_3:+13776463 | None:intergenic |
| TTATAAGGATCAAATTACTC+AGG | 0.623873 | 2_3:-13779066 | Msa0279710:intron |
| AACCAAAGATGAACTGAGCA+GGG | 0.624655 | 2_3:-13777672 | Msa0279710:CDS |
| GCCGTAGAATCTGTAGAGCG+TGG | 0.627881 | 2_3:-13779230 | Msa0279710:CDS |
| GGAAATGTCAGGACTCTCAA+CGG | 0.628067 | 2_3:-13777366 | Msa0279710:CDS |
| CAGTTTGGGAGTCTCTGTGG+TGG | 0.629969 | 2_3:+13776462 | None:intergenic |
| GGCCACACCGTGAAAACCGA+TGG | 0.632545 | 2_3:+13776326 | None:intergenic |
| ACATCGAGTACTAGTGACTC+TGG | 0.637582 | 2_3:-13777284 | Msa0279710:CDS |
| CATACTTGTTTCTAGCATGG+AGG | 0.643179 | 2_3:-13777483 | Msa0279710:CDS |
| GAACAGTTTGGGAGTCTCTG+TGG | 0.665247 | 2_3:+13776459 | None:intergenic |
| TTTGACTGCAGAGAGTACAA+AGG | 0.671398 | 2_3:-13777946 | Msa0279710:intron |
| CATTGAAGGATACTGGCAAG+AGG | 0.671920 | 2_3:-13777769 | Msa0279710:CDS |
| GTCACTTTATAACAGGACCA+AGG | 0.685155 | 2_3:-13777797 | Msa0279710:intron |
| GTTAAAGAGAGCTTAACGTG+CGG | 0.748635 | 2_3:+13776262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATGTTTTTTTATTAAT+TGG | - | chr2_3:13776630-13776649 | Msa0279710:intron | 10.0% |
| !!! | AAAAAGAATGGTTTTTTTAA+TGG | - | chr2_3:13776459-13776478 | Msa0279710:CDS | 15.0% |
| !!! | AAAAGAATGGTTTTTTTAAT+GGG | - | chr2_3:13776460-13776479 | Msa0279710:CDS | 15.0% |
| !! | TAAAAAAACATGAAAGAAAA+AGG | + | chr2_3:13776625-13776644 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTATTAATTGGT+TGG | - | chr2_3:13776634-13776653 | Msa0279710:intron | 15.0% |
| !! | GAATATTTGTATAGAAATTT+AGG | - | chr2_3:13776808-13776827 | Msa0279710:intron | 15.0% |
| !!! | TGGATTGTTTTATAAAATAA+TGG | - | chr2_3:13776897-13776916 | Msa0279710:intron | 15.0% |
| !! | AATAGAAATGACTAATAAAA+AGG | + | chr2_3:13777620-13777639 | None:intergenic | 15.0% |
| !! | AAGAAGAACTAAAATTTCAA+CGG | + | chr2_3:13776097-13776116 | None:intergenic | 20.0% |
| !! | TTCTGATATTAAACGTTATA+AGG | - | chr2_3:13776373-13776392 | Msa0279710:three_prime_UTR | 20.0% |
| !!! | TATTCAACAATTTCAGTTTT+AGG | - | chr2_3:13776413-13776432 | Msa0279710:CDS | 20.0% |
| !!! | ATTCAACAATTTCAGTTTTA+GGG | - | chr2_3:13776414-13776433 | Msa0279710:CDS | 20.0% |
| !!! | TTTTGTTGTTGAAAAAAGAA+TGG | - | chr2_3:13776447-13776466 | Msa0279710:CDS | 20.0% |
| !!! | AGAATCTTCTATTTTGAAAT+GGG | - | chr2_3:13776586-13776605 | Msa0279710:intron | 20.0% |
| !!! | TAATTGGTTGGTTTTTAAAT+AGG | - | chr2_3:13776646-13776665 | Msa0279710:intron | 20.0% |
| !! | ACTGTTAGTCAAATTATTAT+CGG | - | chr2_3:13777040-13777059 | Msa0279710:intron | 20.0% |
| !! | AAAAACACTAATACTTTGTT+TGG | + | chr2_3:13777414-13777433 | None:intergenic | 20.0% |
| !!! | ATTGTTATAATTAGCTTTGT+TGG | - | chr2_3:13777467-13777486 | Msa0279710:CDS | 20.0% |
| !!! | TATGTTTTCTGATATTTATC+AGG | - | chr2_3:13777594-13777613 | Msa0279710:CDS | 20.0% |
| !! | GTGGAATCAATTTAATAAAA+TGG | - | chr2_3:13777881-13777900 | Msa0279710:intron | 20.0% |
| !! | AGAAACAAAAAGATTAAACA+AGG | - | chr2_3:13778067-13778086 | Msa0279710:intron | 20.0% |
| !! | ATCATTTAATACATACAGTA+CGG | + | chr2_3:13778340-13778359 | None:intergenic | 20.0% |
| ! | TTATAAGGATCAAATTACTC+AGG | - | chr2_3:13776388-13776407 | Msa0279710:three_prime_UTR | 25.0% |
| !!! | GAGAATCTTCTATTTTGAAA+TGG | - | chr2_3:13776585-13776604 | Msa0279710:intron | 25.0% |
| !!! | TTCTATTTTGAAATGGGTTT+TGG | - | chr2_3:13776592-13776611 | Msa0279710:intron | 25.0% |
| !!! | TCTATTTTGAAATGGGTTTT+GGG | - | chr2_3:13776593-13776612 | Msa0279710:intron | 25.0% |
| ! | TTCTATAACCCAAAATCAAA+GGG | + | chr2_3:13776689-13776708 | None:intergenic | 25.0% |
| ! | TTTCTATAACCCAAAATCAA+AGG | + | chr2_3:13776690-13776709 | None:intergenic | 25.0% |
| ! | TTTGATGTTATGTTCCTTAT+CGG | - | chr2_3:13776782-13776801 | Msa0279710:intron | 25.0% |
| ! | TACAAATATTCAAACCGATA+AGG | + | chr2_3:13776799-13776818 | None:intergenic | 25.0% |
| ! | TAATTTCACTTTCTAAGCTA+AGG | + | chr2_3:13777106-13777125 | None:intergenic | 25.0% |
| ! | TGAAATTATCCTATCAATCT+TGG | - | chr2_3:13777118-13777137 | Msa0279710:intron | 25.0% |
| ! | GAAATACCTTATTGTTTGAT+CGG | - | chr2_3:13777263-13777282 | Msa0279710:CDS | 25.0% |
| ! | TAAAAACCGATCAAACAATA+AGG | + | chr2_3:13777272-13777291 | None:intergenic | 25.0% |
| ! | CAAAATTAGTAAATTCAACG+TGG | - | chr2_3:13777386-13777405 | Msa0279710:CDS | 25.0% |
| ! | TAAACAAGAAGAAGTAGAAA+AGG | - | chr2_3:13777932-13777951 | Msa0279710:CDS | 25.0% |
| ! | GCAGTCTGAAAATATTAAAA+AGG | - | chr2_3:13777998-13778017 | Msa0279710:intron | 25.0% |
| ! | GATTTAAAAAGGGTTTAACT+TGG | + | chr2_3:13778145-13778164 | None:intergenic | 25.0% |
| ! | TATTAAATGATTCTCTTCTC+AGG | - | chr2_3:13778349-13778368 | Msa0279710:intron | 25.0% |
| ! | TATAATGCAACTCACTAATT+CGG | + | chr2_3:13778784-13778803 | None:intergenic | 25.0% |
| !!! | CTTAAAGATGACTTTAGTTT+TGG | + | chr2_3:13779039-13779058 | None:intergenic | 25.0% |
| ! | CAAAACTAAAGTCATCTTTA+AGG | - | chr2_3:13779037-13779056 | Msa0279710:intron | 25.0% |
| ! | AGTAGATATTATTGTGTGTT+TGG | - | chr2_3:13779103-13779122 | Msa0279710:CDS | 25.0% |
| ! | TCTTGTATTTGTTTATTGCA+TGG | - | chr2_3:13779235-13779254 | Msa0279710:CDS | 25.0% |
| GGAAAAAATATTCAGCACTT+TGG | - | chr2_3:13776253-13776272 | Msa0279710:three_prime_UTR | 30.0% | |
| TGATGTTTGAAGAGAAGAAA+CGG | - | chr2_3:13776516-13776535 | Msa0279710:intron | 30.0% | |
| !!! | TGGTTGGTTTTTAAATAGGT+TGG | - | chr2_3:13776650-13776669 | Msa0279710:intron | 30.0% |
| !!! | GGTTGGTTTTTAAATAGGTT+GGG | - | chr2_3:13776651-13776670 | Msa0279710:intron | 30.0% |
| !! | TAAATAGGTTGGGTTTTTGA+TGG | - | chr2_3:13776661-13776680 | Msa0279710:intron | 30.0% |
| !! | AAATAGGTTGGGTTTTTGAT+GGG | - | chr2_3:13776662-13776681 | Msa0279710:intron | 30.0% |
| !!! | TGTCTTGTTGTTTTTGTTCT+TGG | - | chr2_3:13776745-13776764 | Msa0279710:intron | 30.0% |
| AATCCAACAAGAATAACAAC+AGG | + | chr2_3:13776883-13776902 | None:intergenic | 30.0% | |
| AAGGTAAGTCTTAATGTAAC+TGG | + | chr2_3:13776975-13776994 | None:intergenic | 30.0% | |
| TTATCCTATCAATCTTGGAA+TGG | - | chr2_3:13777123-13777142 | Msa0279710:intron | 30.0% | |
| TAACTAAAAACACACGTTCT+AGG | + | chr2_3:13777330-13777349 | None:intergenic | 30.0% | |
| TCTCAATATCACTTCCAAAT+TGG | - | chr2_3:13777353-13777372 | Msa0279710:CDS | 30.0% | |
| !! | AGCTTTTAAACTATTTGCTG+AGG | - | chr2_3:13777440-13777459 | Msa0279710:CDS | 30.0% |
| !! | CATTCAAGGATTTTTGAGAA+AGG | + | chr2_3:13777568-13777587 | None:intergenic | 30.0% |
| CTTTCTCAAAAATCCTTGAA+TGG | - | chr2_3:13777566-13777585 | Msa0279710:CDS | 30.0% | |
| AAAACATACTTCTCCATTCA+AGG | + | chr2_3:13777582-13777601 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCTCTGCAATTT+TGG | + | chr2_3:13777751-13777770 | None:intergenic | 30.0% |
| ! | TGCAAGAAAAGAATTTTGTG+TGG | - | chr2_3:13777862-13777881 | Msa0279710:intron | 30.0% |
| !! | AAACATACTTGTTTCTAGCA+TGG | - | chr2_3:13777968-13777987 | Msa0279710:intron | 30.0% |
| AGAAAGTAAAGTAGCTGATA+TGG | - | chr2_3:13778040-13778059 | Msa0279710:intron | 30.0% | |
| AGATTAAACAAGGAAATGTC+AGG | - | chr2_3:13778077-13778096 | Msa0279710:intron | 30.0% | |
| GATGTGCAACGATTTAAAAA+GGG | + | chr2_3:13778155-13778174 | None:intergenic | 30.0% | |
| ATCCACAAATTTCTCAGAAA+AGG | - | chr2_3:13778277-13778296 | Msa0279710:intron | 30.0% | |
| !! | TACCTTTTCTGAGAAATTTG+TGG | + | chr2_3:13778282-13778301 | None:intergenic | 30.0% |
| TAAGCAGATAGCAAAAGAAT+GGG | + | chr2_3:13778313-13778332 | None:intergenic | 30.0% | |
| ATAAGCAGATAGCAAAAGAA+TGG | + | chr2_3:13778314-13778333 | None:intergenic | 30.0% | |
| TGACTATAACTATATCAGCT+TGG | + | chr2_3:13778748-13778767 | None:intergenic | 30.0% | |
| ATAATGCAACTCACTAATTC+GGG | + | chr2_3:13778783-13778802 | None:intergenic | 30.0% | |
| CAACAATAACATTCATGGAA+GGG | + | chr2_3:13778927-13778946 | None:intergenic | 30.0% | |
| ACAACAATAACATTCATGGA+AGG | + | chr2_3:13778928-13778947 | None:intergenic | 30.0% | |
| TACATAATTCAGCTCAAAAG+TGG | + | chr2_3:13779350-13779369 | None:intergenic | 30.0% | |
| TAAAATTGCAGAATCAACGC+TGG | - | chr2_3:13776348-13776367 | Msa0279710:three_prime_UTR | 35.0% | |
| AAAATTGCAGAATCAACGCT+GGG | - | chr2_3:13776349-13776368 | Msa0279710:three_prime_UTR | 35.0% | |
| ATTATGAAGCAGCAGAAAAC+CGG | - | chr2_3:13776836-13776855 | Msa0279710:intron | 35.0% | |
| TATGAACAATACATTCCGAC+CGG | + | chr2_3:13776858-13776877 | None:intergenic | 35.0% | |
| ! | AGTCCTGTTGTTATTCTTGT+TGG | - | chr2_3:13776877-13776896 | Msa0279710:intron | 35.0% |
| GTACCTACACTTATGATAGA+AGG | - | chr2_3:13777002-13777021 | Msa0279710:intron | 35.0% | |
| ACACCTTCTATCATAAGTGT+AGG | + | chr2_3:13777008-13777027 | None:intergenic | 35.0% | |
| AACCACATAACTGTAAGAGT+TGG | - | chr2_3:13777230-13777249 | Msa0279710:CDS | 35.0% | |
| ! | AATAAGGTATTTCACCACCA+AGG | + | chr2_3:13777256-13777275 | None:intergenic | 35.0% |
| TATCACTTCCAAATTGGCAT+TGG | - | chr2_3:13777359-13777378 | Msa0279710:CDS | 35.0% | |
| ATCACTTCCAAATTGGCATT+GGG | - | chr2_3:13777360-13777379 | Msa0279710:CDS | 35.0% | |
| ! | AGAGAGTACAAAGGATGATT+TGG | - | chr2_3:13777517-13777536 | Msa0279710:CDS | 35.0% |
| !!! | GATTTGGAGGATTTTAAAGC+CGG | - | chr2_3:13777533-13777552 | Msa0279710:CDS | 35.0% |
| !!! | ATTTGGAGGATTTTAAAGCC+GGG | - | chr2_3:13777534-13777553 | Msa0279710:CDS | 35.0% |
| TTGAGAAAGGTAATCAAACC+CGG | + | chr2_3:13777555-13777574 | None:intergenic | 35.0% | |
| ! | CTGAGAAGTCACTTTATAAC+AGG | - | chr2_3:13777650-13777669 | Msa0279710:CDS | 35.0% |
| ! | AGTTCATCTTTGGTTTCATC+AGG | + | chr2_3:13777777-13777796 | None:intergenic | 35.0% |
| CGATGTGCAACGATTTAAAA+AGG | + | chr2_3:13778156-13778175 | None:intergenic | 35.0% | |
| !!! | CGTGTCTCTTTCTTTTTTCA+AGG | + | chr2_3:13778231-13778250 | None:intergenic | 35.0% |
| ! | TTCTGAGAAATTTGTGGATG+TGG | + | chr2_3:13778276-13778295 | None:intergenic | 35.0% |
| TTCGTTAGACTAAACACACA+AGG | + | chr2_3:13778471-13778490 | None:intergenic | 35.0% | |
| TGTTTAGTCTAACGAACACA+GGG | - | chr2_3:13778475-13778494 | Msa0279710:intron | 35.0% | |
| CTGGACAACAATAACATTCA+TGG | + | chr2_3:13778932-13778951 | None:intergenic | 35.0% | |
| CATGAATGTTATTGTTGTCC+AGG | - | chr2_3:13778930-13778949 | Msa0279710:CDS | 35.0% | |
| AAAAGAAGCTTGAAGAGGAA+AGG | - | chr2_3:13778955-13778974 | Msa0279710:intron | 35.0% | |
| AAGTTGGAAGAGAACAGTTT+GGG | + | chr2_3:13779009-13779028 | None:intergenic | 35.0% | |
| !!! | TAGTTTTGGAACCTTGAAGT+TGG | + | chr2_3:13779025-13779044 | None:intergenic | 35.0% |
| ! | TATTGTGTGTTTGGAACCAT+CGG | - | chr2_3:13779112-13779131 | Msa0279710:CDS | 35.0% |
| !! | CTACTAGTTGTAGCTGTTTT+TGG | + | chr2_3:13779161-13779180 | None:intergenic | 35.0% |
| AATACAAGACTGAGTGTGTT+TGG | + | chr2_3:13779224-13779243 | None:intergenic | 35.0% | |
| TGATTAGTGAGCTTTCTGTT+TGG | - | chr2_3:13779282-13779301 | Msa0279710:exon | 35.0% | |
| AATCTGTAGAGCGTGGAAAT+TGG | - | chr2_3:13776231-13776250 | Msa0279710:three_prime_UTR | 40.0% | |
| ATCTGTAGAGCGTGGAAATT+GGG | - | chr2_3:13776232-13776251 | Msa0279710:three_prime_UTR | 40.0% | |
| GGTTCAGATGATGAAGAATC+AGG | - | chr2_3:13776274-13776293 | Msa0279710:three_prime_UTR | 40.0% | |
| !! | AGCTAAGGCTGATTTGATGA+TGG | - | chr2_3:13776550-13776569 | Msa0279710:intron | 40.0% |
| !! | GCTAAGGCTGATTTGATGAT+GGG | - | chr2_3:13776551-13776570 | Msa0279710:intron | 40.0% |
| !! | TTGATGGGTCCCTTTGATTT+TGG | - | chr2_3:13776677-13776696 | Msa0279710:intron | 40.0% |
| !! | TGATGGGTCCCTTTGATTTT+GGG | - | chr2_3:13776678-13776697 | Msa0279710:intron | 40.0% |
| AAGTGTAGGTACTACAGAGA+AGG | + | chr2_3:13776994-13777013 | None:intergenic | 40.0% | |
| ! | CTTATGATAGAAGGTGTGTC+CGG | - | chr2_3:13777011-13777030 | Msa0279710:intron | 40.0% |
| TTTGACTAACAGTGAGACTC+CGG | + | chr2_3:13777033-13777052 | None:intergenic | 40.0% | |
| GTGACCATTCCAAGATTGAT+AGG | + | chr2_3:13777130-13777149 | None:intergenic | 40.0% | |
| ATCTTGGAATGGTCACTGAT+AGG | - | chr2_3:13777134-13777153 | Msa0279710:intron | 40.0% | |
| TGTTGTTGTAGCACACTTCT+AGG | - | chr2_3:13777183-13777202 | Msa0279710:CDS | 40.0% | |
| ! | ATAACTGTAAGAGTTGGCCT+TGG | - | chr2_3:13777236-13777255 | Msa0279710:CDS | 40.0% |
| CCTACTGTGAAAACAAACAC+TGG | + | chr2_3:13777303-13777322 | None:intergenic | 40.0% | |
| !! | CCAGTGTTTGTTTTCACAGT+AGG | - | chr2_3:13777300-13777319 | Msa0279710:CDS | 40.0% |
| ! | TTTGACTGCAGAGAGTACAA+AGG | - | chr2_3:13777508-13777527 | Msa0279710:CDS | 40.0% |
| ! | GAGTACAAAGGATGATTTGG+AGG | - | chr2_3:13777520-13777539 | Msa0279710:CDS | 40.0% |
| ! | GTCACTTTATAACAGGACCA+AGG | - | chr2_3:13777657-13777676 | Msa0279710:CDS | 40.0% |
| AAGAAAGGAACCTCAAGTAG+TGG | - | chr2_3:13777708-13777727 | Msa0279710:CDS | 40.0% | |
| AGAAAGGAACCTCAAGTAGT+GGG | - | chr2_3:13777709-13777728 | Msa0279710:CDS | 40.0% | |
| AAACCAAAGATGAACTGAGC+AGG | - | chr2_3:13777781-13777800 | Msa0279710:CDS | 40.0% | |
| AACCAAAGATGAACTGAGCA+GGG | - | chr2_3:13777782-13777801 | Msa0279710:CDS | 40.0% | |
| !! | CATACTTGTTTCTAGCATGG+AGG | - | chr2_3:13777971-13777990 | Msa0279710:intron | 40.0% |
| GTGTTTAGTCTAACGAACAC+AGG | - | chr2_3:13778474-13778493 | Msa0279710:intron | 40.0% | |
| ! | AAACATGTGCTTGTTACCTG+TGG | - | chr2_3:13778680-13778699 | Msa0279710:intron | 40.0% |
| ! | AACATGTGCTTGTTACCTGT+GGG | - | chr2_3:13778681-13778700 | Msa0279710:intron | 40.0% |
| AATAGCAGAATTTACCCCAC+AGG | + | chr2_3:13778699-13778718 | None:intergenic | 40.0% | |
| CAACTCACTAATTCGGGAAT+AGG | + | chr2_3:13778777-13778796 | None:intergenic | 40.0% | |
| GTTGCATTATATCGACCATC+TGG | - | chr2_3:13778793-13778812 | Msa0279710:intron | 40.0% | |
| ! | TCTTCAAGCTTCTTTTCTCC+TGG | + | chr2_3:13778951-13778970 | None:intergenic | 40.0% |
| AGGAGAAAAGAAGCTTGAAG+AGG | - | chr2_3:13778950-13778969 | Msa0279710:CDS | 40.0% | |
| ! | TCTCTGTGGTGGGAATAATT+GGG | + | chr2_3:13778984-13779003 | None:intergenic | 40.0% |
| GAAGTTGGAAGAGAACAGTT+TGG | + | chr2_3:13779010-13779029 | None:intergenic | 40.0% | |
| ACTGTTCTCTTCCAACTTCA+AGG | - | chr2_3:13779011-13779030 | Msa0279710:intron | 40.0% | |
| !!! | TTTGGAACCATCGGTTTTCA+CGG | - | chr2_3:13779121-13779140 | Msa0279710:CDS | 40.0% |
| !!! | GTAGCTGTTTTTGGTACGTT+AGG | + | chr2_3:13779152-13779171 | None:intergenic | 40.0% |
| GTTAAAGAGAGCTTAACGTG+CGG | + | chr2_3:13779195-13779214 | None:intergenic | 40.0% | |
| ! | GTGAGCTTTCTGTTTGGAAT+AGG | - | chr2_3:13779288-13779307 | Msa0279710:five_prime_UTR | 40.0% |
| ! | TCTACGGCGTTTGAAGGTTT+TGG | + | chr2_3:13776212-13776231 | None:intergenic | 45.0% |
| ACAGATTCTACGGCGTTTGA+AGG | + | chr2_3:13776218-13776237 | None:intergenic | 45.0% | |
| TCCACGCTCTACAGATTCTA+CGG | + | chr2_3:13776228-13776247 | None:intergenic | 45.0% | |
| ACGGTTGCTTGAAGAAGCTA+AGG | - | chr2_3:13776535-13776554 | Msa0279710:intron | 45.0% | |
| TGTGCTACAACAACAGTCAG+TGG | + | chr2_3:13777178-13777197 | None:intergenic | 45.0% | |
| GGCCAACTCTTACAGTTATG+TGG | + | chr2_3:13777235-13777254 | None:intergenic | 45.0% | |
| TTTGCGTCCCAATGCCAATT+TGG | + | chr2_3:13777370-13777389 | None:intergenic | 45.0% | |
| TATCCTTCAATGGCGTTCCT+TGG | + | chr2_3:13777677-13777696 | None:intergenic | 45.0% | |
| CTCTTGCCAGTATCCTTCAA+TGG | + | chr2_3:13777687-13777706 | None:intergenic | 45.0% | |
| CATTGAAGGATACTGGCAAG+AGG | - | chr2_3:13777685-13777704 | Msa0279710:CDS | 45.0% | |
| GATACTGGCAAGAGGAAGAA+AGG | - | chr2_3:13777693-13777712 | Msa0279710:CDS | 45.0% | |
| CTTCTTCTTCCCACTACTTG+AGG | + | chr2_3:13777721-13777740 | None:intergenic | 45.0% | |
| TACCCTGCTCAGTTCATCTT+TGG | + | chr2_3:13777787-13777806 | None:intergenic | 45.0% | |
| GGAAATGTCAGGACTCTCAA+CGG | - | chr2_3:13778088-13778107 | Msa0279710:intron | 45.0% | |
| ACATCGAGTACTAGTGACTC+TGG | - | chr2_3:13778170-13778189 | Msa0279710:intron | 45.0% | |
| CTGGAAAAGTTGAGAGTAGC+AGG | - | chr2_3:13778189-13778208 | Msa0279710:intron | 45.0% | |
| ! | GATGTGGAAGCATGTTCATC+AGG | + | chr2_3:13778260-13778279 | None:intergenic | 45.0% |
| ! | ACATGTGCTTGTTACCTGTG+GGG | - | chr2_3:13778682-13778701 | Msa0279710:intron | 45.0% |
| ! | GCGTTGAAGCTATTTCCAGA+TGG | + | chr2_3:13778811-13778830 | None:intergenic | 45.0% |
| ! | GTCTCTGTGGTGGGAATAAT+TGG | + | chr2_3:13778985-13779004 | None:intergenic | 45.0% |
| !!! | TTTGTTATTTTAATTTTAAA+TGG | - | chr2_3:13776929-13776948 | Msa0279710:intron | 5.0% |
| CGCATCGTGTGATGCAGAAT+AGG | + | chr2_3:13776176-13776195 | None:intergenic | 50.0% | |
| TGAAGCAGCAGAAAACCGGT+CGG | - | chr2_3:13776840-13776859 | Msa0279710:intron | 50.0% | |
| !! | ACTGTAAGAGTTGGCCTTGG+TGG | - | chr2_3:13777239-13777258 | Msa0279710:CDS | 50.0% |
| GGAACGCCATTGAAGGATAC+TGG | - | chr2_3:13777678-13777697 | Msa0279710:CDS | 50.0% | |
| GTCAGGACTCTCAACGGAAT+TGG | - | chr2_3:13778094-13778113 | Msa0279710:intron | 50.0% | |
| AGTTTGGGAGTCTCTGTGGT+GGG | + | chr2_3:13778994-13779013 | None:intergenic | 50.0% | |
| GAACAGTTTGGGAGTCTCTG+TGG | + | chr2_3:13778998-13779017 | None:intergenic | 50.0% | |
| !!! | AACCATCGGTTTTCACGGTG+TGG | - | chr2_3:13779126-13779145 | Msa0279710:CDS | 50.0% |
| GCCGTAGAATCTGTAGAGCG+TGG | - | chr2_3:13776224-13776243 | Msa0279710:three_prime_UTR | 55.0% | |
| GGACCAAGGAACGCCATTGA+AGG | - | chr2_3:13777671-13777690 | Msa0279710:CDS | 55.0% | |
| CAGTTTGGGAGTCTCTGTGG+TGG | + | chr2_3:13778995-13779014 | None:intergenic | 55.0% | |
| GGCCACACCGTGAAAACCGA+TGG | + | chr2_3:13779131-13779150 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13776084 | 13779392 | 13776084 | ID=Msa0279710;Name=Msa0279710 |
| chr2_3 | mRNA | 13776084 | 13779392 | 13776084 | ID=Msa0279710-mRNA-1;Parent=Msa0279710;Name=Msa0279710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=107|1|1|1|1|1|5|324|382 |
| chr2_3 | exon | 13776084 | 13776524 | 13776084 | ID=Msa0279710-mRNA-1:exon:5828;Parent=Msa0279710-mRNA-1 |
| chr2_3 | exon | 13777178 | 13777804 | 13777178 | ID=Msa0279710-mRNA-1:exon:5827;Parent=Msa0279710-mRNA-1 |
| chr2_3 | exon | 13777884 | 13777957 | 13777884 | ID=Msa0279710-mRNA-1:exon:5826;Parent=Msa0279710-mRNA-1 |
| chr2_3 | exon | 13778862 | 13778973 | 13778862 | ID=Msa0279710-mRNA-1:exon:5825;Parent=Msa0279710-mRNA-1 |
| chr2_3 | exon | 13779067 | 13779392 | 13779067 | ID=Msa0279710-mRNA-1:exon:5824;Parent=Msa0279710-mRNA-1 |
| chr2_3 | five_prime_UTR | 13779286 | 13779392 | 13779286 | ID=Msa0279710-mRNA-1:five_prime_utr;Parent=Msa0279710-mRNA-1 |
| chr2_3 | CDS | 13779067 | 13779285 | 13779067 | ID=Msa0279710-mRNA-1:cds;Parent=Msa0279710-mRNA-1 |
| chr2_3 | CDS | 13778862 | 13778973 | 13778862 | ID=Msa0279710-mRNA-1:cds;Parent=Msa0279710-mRNA-1 |
| chr2_3 | CDS | 13777884 | 13777957 | 13777884 | ID=Msa0279710-mRNA-1:cds;Parent=Msa0279710-mRNA-1 |
| chr2_3 | CDS | 13777178 | 13777804 | 13777178 | ID=Msa0279710-mRNA-1:cds;Parent=Msa0279710-mRNA-1 |
| chr2_3 | CDS | 13776408 | 13776524 | 13776408 | ID=Msa0279710-mRNA-1:cds;Parent=Msa0279710-mRNA-1 |
| chr2_3 | three_prime_UTR | 13776084 | 13776407 | 13776084 | ID=Msa0279710-mRNA-1:three_prime_utr;Parent=Msa0279710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
