Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186560 | XP_003627848.2 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 7.88e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186560 | sp|Q3SZE2|PFD1_BOVIN | 36.937 | 111 | 70 | 0 | 3 | 113 | 6 | 116 | 4.27e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044330 | Msa1186560 | 0.815759 | 7.841169e-52 | -8.615850e-47 |
| Msa0667790 | Msa1186560 | 0.801137 | 1.037747e-48 | -8.615850e-47 |
| Msa0147250 | Msa1186560 | 0.804966 | 1.676329e-49 | -8.615850e-47 |
| Msa0149000 | Msa1186560 | 0.836140 | 1.114354e-56 | -8.615850e-47 |
| Msa1051880 | Msa1186560 | 0.827689 | 1.362067e-54 | -8.615850e-47 |
| Msa1186560 | Msa1282240 | 0.817811 | 2.717401e-52 | -8.615850e-47 |
| Msa1186560 | Msa1321360 | 0.987337 | 6.747544e-170 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186560 | MtrunA17_Chr8g0353091 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 7.25e-89 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186560 | AT2G07340.1 | 68.750 | 128 | 40 | 0 | 1 | 128 | 1 | 128 | 7.12e-62 | 186 |
| Msa1186560 | AT2G07340.2 | 68.750 | 128 | 39 | 1 | 1 | 128 | 1 | 127 | 1.09e-59 | 180 |
Find 43 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCGAATGTTGTCTTTAT+AGG | 0.183275 | 8_1:-24987803 | Msa1186560:three_prime_UTR |
| CTGTTTCTTTGGAACGCATC+TGG | 0.186816 | 8_1:+24988677 | None:intergenic |
| TCTTAATTCTCAGTCACATT+AGG | 0.261345 | 8_1:-24990194 | Msa1186560:five_prime_UTR |
| CAAGAATGAAATAGATGTTT+TGG | 0.266357 | 8_1:+24987592 | None:intergenic |
| CTCCGTTCAATTGATTGATA+TGG | 0.272066 | 8_1:-24990133 | Msa1186560:exon |
| ACGCTTCTTGTCTGTTTCTT+TGG | 0.277466 | 8_1:+24988666 | None:intergenic |
| CTTAATTCTCAGTCACATTA+GGG | 0.321198 | 8_1:-24990193 | Msa1186560:five_prime_UTR |
| TTGAACGAATAGAAACCTTT+AGG | 0.330258 | 8_1:-24987888 | Msa1186560:three_prime_UTR |
| TCTCGAATGTTGTCTTTATA+GGG | 0.338046 | 8_1:-24987802 | Msa1186560:three_prime_UTR |
| CTGCCTGCTACGTCTGTTCA+TGG | 0.357342 | 8_1:-24987840 | Msa1186560:three_prime_UTR |
| AATTGTGGCCAGGTTTGTAT+TGG | 0.395225 | 8_1:-24988349 | Msa1186560:intron |
| CACAATTTCACAAATCCTAA+AGG | 0.395598 | 8_1:+24987873 | None:intergenic |
| CTGCCAGTAAAATTCAATAA+TGG | 0.397167 | 8_1:+24987920 | None:intergenic |
| CATAATTTGACGAGCAAGAC+CGG | 0.429125 | 8_1:+24987968 | None:intergenic |
| AATAAACCACTTGTAAATCT+TGG | 0.432392 | 8_1:-24987489 | Msa1186560:three_prime_UTR |
| GAGAATTCTTCGATCGGAAA+AGG | 0.435446 | 8_1:+24990153 | None:intergenic |
| TGTTTCTTTGGAACGCATCT+GGG | 0.436906 | 8_1:+24988678 | None:intergenic |
| TAGGCTTTCGTTGAAATTCA+AGG | 0.455683 | 8_1:-24989981 | Msa1186560:CDS |
| TTGTAGACATTAGTATCGTC+AGG | 0.474681 | 8_1:+24988610 | None:intergenic |
| GACAATGGAGGAGCTGAAGC+AGG | 0.474978 | 8_1:-24988635 | Msa1186560:CDS |
| ACAGAGCTCAAAAGAATACT+TGG | 0.492644 | 8_1:-24988045 | Msa1186560:intron |
| CAATATGAAAATAGCGTGCA+TGG | 0.511311 | 8_1:-24987564 | Msa1186560:three_prime_UTR |
| CTGCTACGTCTGTTCATGGT+TGG | 0.517274 | 8_1:-24987836 | Msa1186560:three_prime_UTR |
| GTCTCTTATCTGACTTGAGA+AGG | 0.519451 | 8_1:-24987716 | Msa1186560:three_prime_UTR |
| GGCAACGTTAATGAACGAAC+AGG | 0.526861 | 8_1:-24988319 | Msa1186560:CDS |
| AACTACAAGGAAATTAAAGC+AGG | 0.535671 | 8_1:-24989946 | Msa1186560:intron |
| CGAACAGGAGAACAAGTTCA+AGG | 0.550157 | 8_1:-24988304 | Msa1186560:CDS |
| ACTAATGTCTACAAATCCAT+TGG | 0.553731 | 8_1:-24988601 | Msa1186560:intron |
| CAACCATGAACAGACGTAGC+AGG | 0.557479 | 8_1:+24987837 | None:intergenic |
| TTAGGATTTGTGAAATTGTG+AGG | 0.570039 | 8_1:-24987870 | Msa1186560:three_prime_UTR |
| GGAGAAGCAGATTGCAGAGG+TGG | 0.574472 | 8_1:-24988024 | Msa1186560:CDS |
| TGCCATATCAATCAATTGAA+CGG | 0.576128 | 8_1:+24990131 | None:intergenic |
| TTGCTGAGTAAATTGCAAAA+CGG | 0.577834 | 8_1:-24990253 | Msa1186560:five_prime_UTR |
| TGAACGGAGAATTCTTCGAT+CGG | 0.587944 | 8_1:+24990147 | None:intergenic |
| GAACTACCAAGATTTACAAG+TGG | 0.612603 | 8_1:+24987483 | None:intergenic |
| GTCGTATGATAGAAACTACA+AGG | 0.618512 | 8_1:-24989959 | Msa1186560:CDS |
| ATAATTTGACGAGCAAGACC+GGG | 0.620149 | 8_1:+24987969 | None:intergenic |
| GAGCTGTTACAACAAGATCC+CGG | 0.623013 | 8_1:-24987987 | Msa1186560:CDS |
| CAGGTTTGTATTGGAGACGA+AGG | 0.626778 | 8_1:-24988340 | Msa1186560:CDS |
| TATAAAGACAACATTCGAGA+GGG | 0.646291 | 8_1:+24987805 | None:intergenic |
| AAGGACATTTACTTGTAATG+CGG | 0.654969 | 8_1:+24988263 | None:intergenic |
| CTATAAAGACAACATTCGAG+AGG | 0.693362 | 8_1:+24987804 | None:intergenic |
| CTTGGAGAAGCAGATTGCAG+AGG | 0.694862 | 8_1:-24988027 | Msa1186560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAATCAGTTTATTT+TGG | - | chr8_1:24989284-24989303 | Msa1186560:intron | 10.0% |
| !! | TAAATTTGCGAAATAAAAAT+AGG | - | chr8_1:24987489-24987508 | Msa1186560:three_prime_UTR | 15.0% |
| !! | AAAATTAGAGCAATAAAAAA+GGG | + | chr8_1:24987749-24987768 | None:intergenic | 15.0% |
| !! | AAAAATTAGAGCAATAAAAA+AGG | + | chr8_1:24987750-24987769 | None:intergenic | 15.0% |
| !! | TAATAATTTGAGAAAATGAA+AGG | - | chr8_1:24988169-24988188 | Msa1186560:intron | 15.0% |
| !! | AATAATTTGAGAAAATGAAA+GGG | - | chr8_1:24988170-24988189 | Msa1186560:intron | 15.0% |
| !!! | AATTTGAGTTTTTTTTATCA+AGG | - | chr8_1:24988329-24988348 | Msa1186560:CDS | 15.0% |
| !! | AGAAAAAAATGTATAAAAGT+AGG | - | chr8_1:24988443-24988462 | Msa1186560:intron | 15.0% |
| !!! | AATATCAAAGTTTTCTTTAT+TGG | + | chr8_1:24988988-24989007 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGAAGAAAAATA+GGG | + | chr8_1:24989270-24989289 | None:intergenic | 15.0% |
| !!! | AATTATTTCTGAAGAAAAAT+AGG | + | chr8_1:24989271-24989290 | None:intergenic | 15.0% |
| !! | TTGAAATTGTAGAAGAAAAA+GGG | + | chr8_1:24987702-24987721 | None:intergenic | 20.0% |
| !! | ATTGAAATTGTAGAAGAAAA+AGG | + | chr8_1:24987703-24987722 | None:intergenic | 20.0% |
| !! | AAATTAGAGCAATAAAAAAG+GGG | + | chr8_1:24987748-24987767 | None:intergenic | 20.0% |
| !!! | TGAATAATTGAACTTTGTTT+TGG | - | chr8_1:24987946-24987965 | Msa1186560:exon | 20.0% |
| !!! | GAATAATTGAACTTTGTTTT+GGG | - | chr8_1:24987947-24987966 | Msa1186560:exon | 20.0% |
| !!! | AATAATTGAACTTTGTTTTG+GGG | - | chr8_1:24987948-24987967 | Msa1186560:exon | 20.0% |
| !! | AAACACTCATAATTTATGAA+AGG | + | chr8_1:24988575-24988594 | None:intergenic | 20.0% |
| !! | ATACAATTCTAAATACTTGT+AGG | + | chr8_1:24989226-24989245 | None:intergenic | 20.0% |
| !! | TCTAATACAATCTTAAATTG+TGG | - | chr8_1:24989411-24989430 | Msa1186560:intron | 20.0% |
| !!! | TATCCATTATTGAATTTTAC+TGG | - | chr8_1:24989852-24989871 | Msa1186560:intron | 20.0% |
| ! | TGAAATTGTAGAAGAAAAAG+GGG | + | chr8_1:24987701-24987720 | None:intergenic | 25.0% |
| ! | TGTTTGATGCATAAAAATGT+AGG | - | chr8_1:24987775-24987794 | Msa1186560:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTGGGGATTATTAT+GGG | - | chr8_1:24987959-24987978 | Msa1186560:CDS | 25.0% |
| ! | TTGTAGTAATTAGACTAAGT+TGG | - | chr8_1:24988006-24988025 | Msa1186560:CDS | 25.0% |
| !! | GTGTATGTTTTGTAATGTAT+TGG | - | chr8_1:24988116-24988135 | Msa1186560:intron | 25.0% |
| ! | TTCTACATGGTAAAAAGTAA+AGG | - | chr8_1:24988280-24988299 | Msa1186560:CDS | 25.0% |
| !!! | TTTTTTATCAAGGTTGAGTT+TGG | - | chr8_1:24988339-24988358 | Msa1186560:CDS | 25.0% |
| !! | TTTTTATCAAGGTTGAGTTT+GGG | - | chr8_1:24988340-24988359 | Msa1186560:CDS | 25.0% |
| !! | TAAATTATGAGTGTTTTTCC+TGG | - | chr8_1:24988579-24988598 | Msa1186560:intron | 25.0% |
| !!! | AACTCTAAATTCTTTGAAAC+TGG | + | chr8_1:24988753-24988772 | None:intergenic | 25.0% |
| ! | CAAGAAGTTATATCCTTATT+AGG | - | chr8_1:24989020-24989039 | Msa1186560:intron | 25.0% |
| !! | AGATATCTTTTACATACCAA+TGG | + | chr8_1:24989193-24989212 | None:intergenic | 25.0% |
| ! | TGGTATGTAAAAGATATCTT+AGG | - | chr8_1:24989194-24989213 | Msa1186560:intron | 25.0% |
| !!! | AGTTTATTTTGGTTTTTGCA+GGG | - | chr8_1:24989295-24989314 | Msa1186560:intron | 25.0% |
| ! | ATTCTGTAGCATGTTTAAAT+AGG | + | chr8_1:24989340-24989359 | None:intergenic | 25.0% |
| ! | AGAACAAAAACTTCATTGTT+GGG | - | chr8_1:24989362-24989381 | Msa1186560:intron | 25.0% |
| ! | ATCTGAGTGAACAAATAATA+TGG | - | chr8_1:24989701-24989720 | Msa1186560:intron | 25.0% |
| !! | CAAGAATGAAATAGATGTTT+TGG | + | chr8_1:24990186-24990205 | None:intergenic | 25.0% |
| TTGCTGAGTAAATTGCAAAA+CGG | - | chr8_1:24987522-24987541 | Msa1186560:three_prime_UTR | 30.0% | |
| TCTTAATTCTCAGTCACATT+AGG | - | chr8_1:24987581-24987600 | Msa1186560:three_prime_UTR | 30.0% | |
| CTTAATTCTCAGTCACATTA+GGG | - | chr8_1:24987582-24987601 | Msa1186560:three_prime_UTR | 30.0% | |
| TGCCATATCAATCAATTGAA+CGG | + | chr8_1:24987647-24987666 | None:intergenic | 30.0% | |
| AACTACAAGGAAATTAAAGC+AGG | - | chr8_1:24987829-24987848 | Msa1186560:three_prime_UTR | 30.0% | |
| !!! | CTTTGTTTTGGGGATTATTA+TGG | - | chr8_1:24987958-24987977 | Msa1186560:CDS | 30.0% |
| !! | AGTAAAGGTTAAAGTACTGA+AGG | - | chr8_1:24988295-24988314 | Msa1186560:CDS | 30.0% |
| !! | GTAAAGGTTAAAGTACTGAA+GGG | - | chr8_1:24988296-24988315 | Msa1186560:CDS | 30.0% |
| GCTCTTTATGAAAACTACTT+GGG | + | chr8_1:24988390-24988409 | None:intergenic | 30.0% | |
| TGCTCTTTATGAAAACTACT+TGG | + | chr8_1:24988391-24988410 | None:intergenic | 30.0% | |
| ! | AGATTCTTGCTGATTATACA+TGG | - | chr8_1:24988480-24988499 | Msa1186560:intron | 30.0% |
| ! | GATTCTTGCTGATTATACAT+GGG | - | chr8_1:24988481-24988500 | Msa1186560:intron | 30.0% |
| ! | TTCCTGGTAGTTTTTGTATA+AGG | - | chr8_1:24988595-24988614 | Msa1186560:intron | 30.0% |
| ACTAATGTCTACAAATCCAT+TGG | - | chr8_1:24989174-24989193 | Msa1186560:intron | 30.0% | |
| !!! | CAGTTTATTTTGGTTTTTGC+AGG | - | chr8_1:24989294-24989313 | Msa1186560:intron | 30.0% |
| GAGAACAAAAACTTCATTGT+TGG | - | chr8_1:24989361-24989380 | Msa1186560:intron | 30.0% | |
| AAGGACATTTACTTGTAATG+CGG | + | chr8_1:24989515-24989534 | None:intergenic | 30.0% | |
| AGAAGTTTCCATAAAAGTGA+AGG | + | chr8_1:24989538-24989557 | None:intergenic | 30.0% | |
| GTGAACAAATAATATGGCTT+TGG | - | chr8_1:24989707-24989726 | Msa1186560:intron | 30.0% | |
| CTGCCAGTAAAATTCAATAA+TGG | + | chr8_1:24989858-24989877 | None:intergenic | 30.0% | |
| ! | TTATTGAATTTTACTGGCAG+TGG | - | chr8_1:24989858-24989877 | Msa1186560:intron | 30.0% |
| TTGAACGAATAGAAACCTTT+AGG | - | chr8_1:24989887-24989906 | Msa1186560:intron | 30.0% | |
| CACAATTTCACAAATCCTAA+AGG | + | chr8_1:24989905-24989924 | None:intergenic | 30.0% | |
| TTAGGATTTGTGAAATTGTG+AGG | - | chr8_1:24989905-24989924 | Msa1186560:intron | 30.0% | |
| TATAAAGACAACATTCGAGA+GGG | + | chr8_1:24989973-24989992 | None:intergenic | 30.0% | |
| TCTCGAATGTTGTCTTTATA+GGG | - | chr8_1:24989973-24989992 | Msa1186560:CDS | 30.0% | |
| CTCCGTTCAATTGATTGATA+TGG | - | chr8_1:24987642-24987661 | Msa1186560:three_prime_UTR | 35.0% | |
| ! | AAAAGGGGATTGAGTTGTTA+CGG | + | chr8_1:24987686-24987705 | None:intergenic | 35.0% |
| TAGGCTTTCGTTGAAATTCA+AGG | - | chr8_1:24987794-24987813 | Msa1186560:three_prime_UTR | 35.0% | |
| GTCGTATGATAGAAACTACA+AGG | - | chr8_1:24987816-24987835 | Msa1186560:three_prime_UTR | 35.0% | |
| !!! | GGTACCTTTTGTTTTTGTGA+GGG | - | chr8_1:24987980-24987999 | Msa1186560:CDS | 35.0% |
| ACTACCCTCACAAAAACAAA+AGG | + | chr8_1:24987987-24988006 | None:intergenic | 35.0% | |
| AACCAACACTTCAGATTGAA+GGG | + | chr8_1:24988262-24988281 | None:intergenic | 35.0% | |
| GTCCTTATACAAAAACTACC+AGG | + | chr8_1:24988600-24988619 | None:intergenic | 35.0% | |
| GGAATAAGCACAGTACATAT+AGG | + | chr8_1:24988716-24988735 | None:intergenic | 35.0% | |
| TATTACTACTTGTGTGTGCT+AGG | - | chr8_1:24988859-24988878 | Msa1186560:intron | 35.0% | |
| TTGTAGACATTAGTATCGTC+AGG | + | chr8_1:24989168-24989187 | None:intergenic | 35.0% | |
| TACAATCTTAAATTGTGGCC+AGG | - | chr8_1:24989416-24989435 | Msa1186560:intron | 35.0% | |
| !! | ATGTCCTTCCTTCACTTTTA+TGG | - | chr8_1:24989527-24989546 | Msa1186560:intron | 35.0% |
| GTTTCCATAAAAGTGAAGGA+AGG | + | chr8_1:24989534-24989553 | None:intergenic | 35.0% | |
| ACAGAGCTCAAAAGAATACT+TGG | - | chr8_1:24989730-24989749 | Msa1186560:intron | 35.0% | |
| CTATAAAGACAACATTCGAG+AGG | + | chr8_1:24989974-24989993 | None:intergenic | 35.0% | |
| CTCTCGAATGTTGTCTTTAT+AGG | - | chr8_1:24989972-24989991 | Msa1186560:CDS | 35.0% | |
| CAATATGAAAATAGCGTGCA+TGG | - | chr8_1:24990211-24990230 | Msa1186560:five_prime_UTR | 35.0% | |
| GAGAATTCTTCGATCGGAAA+AGG | + | chr8_1:24987625-24987644 | None:intergenic | 40.0% | |
| TGAACGGAGAATTCTTCGAT+CGG | + | chr8_1:24987631-24987650 | None:intergenic | 40.0% | |
| !!! | GGGTACCTTTTGTTTTTGTG+AGG | - | chr8_1:24987979-24987998 | Msa1186560:CDS | 40.0% |
| ATTGAAGGGTTGTCTAGTGT+CGG | + | chr8_1:24988248-24988267 | None:intergenic | 40.0% | |
| ! | AACCCTTCAATCTGAAGTGT+TGG | - | chr8_1:24988257-24988276 | Msa1186560:intron | 40.0% |
| GAACCAACACTTCAGATTGA+AGG | + | chr8_1:24988263-24988282 | None:intergenic | 40.0% | |
| !! | TCTGAAGTGTTGGTTCTACA+TGG | - | chr8_1:24988267-24988286 | Msa1186560:intron | 40.0% |
| !! | AAGGTTAAAGTACTGAAGGG+AGG | - | chr8_1:24988299-24988318 | Msa1186560:CDS | 40.0% |
| ! | AAACTGGAAGAGCACAATTC+TGG | + | chr8_1:24988737-24988756 | None:intergenic | 40.0% |
| ! | TCTAGAGTCAGTGATATGTG+AGG | + | chr8_1:24988810-24988829 | None:intergenic | 40.0% |
| ! | GTCTAAAGCAACGCCTAATA+AGG | + | chr8_1:24989036-24989055 | None:intergenic | 40.0% |
| TATATTATCCCCTTGCATGC+AGG | - | chr8_1:24989068-24989087 | Msa1186560:intron | 40.0% | |
| !! | TGTTTCTTTGGAACGCATCT+GGG | + | chr8_1:24989100-24989119 | None:intergenic | 40.0% |
| ! | ACGCTTCTTGTCTGTTTCTT+TGG | + | chr8_1:24989112-24989131 | None:intergenic | 40.0% |
| !!! | GAAGCGTGCTTTTTTGACAA+TGG | - | chr8_1:24989125-24989144 | Msa1186560:intron | 40.0% |
| AATTGTGGCCAGGTTTGTAT+TGG | - | chr8_1:24989426-24989445 | Msa1186560:intron | 40.0% | |
| ATAATTTGACGAGCAAGACC+GGG | + | chr8_1:24989809-24989828 | None:intergenic | 40.0% | |
| CATAATTTGACGAGCAAGAC+CGG | + | chr8_1:24989810-24989829 | None:intergenic | 40.0% | |
| ! | TTGAATTTTACTGGCAGTGG+CGG | - | chr8_1:24989861-24989880 | Msa1186560:intron | 40.0% |
| ! | GTCTCTTATCTGACTTGAGA+AGG | - | chr8_1:24990059-24990078 | Msa1186560:intron | 40.0% |
| GTGTCTGACATCGACAAATG+TGG | + | chr8_1:24988215-24988234 | None:intergenic | 45.0% | |
| TACTTGTGTGTGCTAGGATG+TGG | - | chr8_1:24988865-24988884 | Msa1186560:intron | 45.0% | |
| !! | CTGTTTCTTTGGAACGCATC+TGG | + | chr8_1:24989101-24989120 | None:intergenic | 45.0% |
| !!! | GCGTGCTTTTTTGACAATGG+AGG | - | chr8_1:24989128-24989147 | Msa1186560:intron | 45.0% |
| CTTCGTCTCCAATACAAACC+TGG | + | chr8_1:24989437-24989456 | None:intergenic | 45.0% | |
| CAGGTTTGTATTGGAGACGA+AGG | - | chr8_1:24989435-24989454 | Msa1186560:intron | 45.0% | |
| GGCAACGTTAATGAACGAAC+AGG | - | chr8_1:24989456-24989475 | Msa1186560:intron | 45.0% | |
| CGAACAGGAGAACAAGTTCA+AGG | - | chr8_1:24989471-24989490 | Msa1186560:intron | 45.0% | |
| GAGCTGTTACAACAAGATCC+CGG | - | chr8_1:24989788-24989807 | Msa1186560:intron | 45.0% | |
| ! | TGAATTTTACTGGCAGTGGC+GGG | - | chr8_1:24989862-24989881 | Msa1186560:intron | 45.0% |
| ! | GTCTAGTGTCGGACACGTAA+TGG | + | chr8_1:24988237-24988256 | None:intergenic | 50.0% |
| GCTGATTATACATGGGCGAG+TGG | - | chr8_1:24988488-24988507 | Msa1186560:intron | 50.0% | |
| GATTATACATGGGCGAGTGG+TGG | - | chr8_1:24988491-24988510 | Msa1186560:intron | 50.0% | |
| GCATTGCACAAACGTGACAG+TGG | - | chr8_1:24988890-24988909 | Msa1186560:intron | 50.0% | |
| TGCAGGGAAAACGTAAGTCG+TGG | - | chr8_1:24989311-24989330 | Msa1186560:intron | 50.0% | |
| CTTGGAGAAGCAGATTGCAG+AGG | - | chr8_1:24989748-24989767 | Msa1186560:intron | 50.0% | |
| CAACCATGAACAGACGTAGC+AGG | + | chr8_1:24989941-24989960 | None:intergenic | 50.0% | |
| CTGCTACGTCTGTTCATGGT+TGG | - | chr8_1:24989939-24989958 | Msa1186560:intron | 50.0% | |
| GGCGAGTGGTGGTTAGTATG+TGG | - | chr8_1:24988502-24988521 | Msa1186560:intron | 55.0% | |
| GACAATGGAGGAGCTGAAGC+AGG | - | chr8_1:24989140-24989159 | Msa1186560:intron | 55.0% | |
| GGAGAAGCAGATTGCAGAGG+TGG | - | chr8_1:24989751-24989770 | Msa1186560:intron | 55.0% | |
| CTGCCTGCTACGTCTGTTCA+TGG | - | chr8_1:24989935-24989954 | Msa1186560:intron | 55.0% | |
| GGTCTGCACCTGCATGCAAG+GGG | + | chr8_1:24989079-24989098 | None:intergenic | 60.0% | |
| GGGTCTGCACCTGCATGCAA+GGG | + | chr8_1:24989080-24989099 | None:intergenic | 60.0% | |
| TGGGTCTGCACCTGCATGCA+AGG | + | chr8_1:24989081-24989100 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24987489 | 24990308 | 24987489 | ID=Msa1186560;Name=Msa1186560 |
| chr8_1 | mRNA | 24987489 | 24990308 | 24987489 | ID=Msa1186560-mRNA-1;Parent=Msa1186560;Name=Msa1186560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=172|0.8|0.83|1|1|1|6|464|128 |
| chr8_1 | exon | 24987489 | 24988063 | 24987489 | ID=Msa1186560-mRNA-1:exon:9069;Parent=Msa1186560-mRNA-1 |
| chr8_1 | exon | 24988275 | 24988359 | 24988275 | ID=Msa1186560-mRNA-1:exon:9068;Parent=Msa1186560-mRNA-1 |
| chr8_1 | exon | 24988475 | 24988481 | 24988475 | ID=Msa1186560-mRNA-1:exon:9067;Parent=Msa1186560-mRNA-1 |
| chr8_1 | exon | 24988602 | 24988707 | 24988602 | ID=Msa1186560-mRNA-1:exon:9066;Parent=Msa1186560-mRNA-1 |
| chr8_1 | exon | 24989947 | 24990000 | 24989947 | ID=Msa1186560-mRNA-1:exon:9065;Parent=Msa1186560-mRNA-1 |
| chr8_1 | exon | 24990113 | 24990308 | 24990113 | ID=Msa1186560-mRNA-1:exon:9064;Parent=Msa1186560-mRNA-1 |
| chr8_1 | five_prime_UTR | 24990137 | 24990308 | 24990137 | ID=Msa1186560-mRNA-1:five_prime_utr;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24990113 | 24990136 | 24990113 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24989947 | 24990000 | 24989947 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24988602 | 24988707 | 24988602 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24988475 | 24988481 | 24988475 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24988275 | 24988359 | 24988275 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | CDS | 24987953 | 24988063 | 24987953 | ID=Msa1186560-mRNA-1:cds;Parent=Msa1186560-mRNA-1 |
| chr8_1 | three_prime_UTR | 24987489 | 24987952 | 24987489 | ID=Msa1186560-mRNA-1:three_prime_utr;Parent=Msa1186560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
