AlfalfaGEDB | Msa0149000

M. sativa cultivar zhongmu-4 / Msa0149000

KEGG: K00417
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
PFAM: PF02271.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0149000	sp\|F4JWS8\|QCR72_ARATH	79.508	122	25	0	1	122	1	122	2.67e-68	204

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0149000	B7FGY5	100.000	122	0	0	1	122	1	122	3.75e-83	248

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0149000	0.811555	6.602680e-51	-8.615850e-47
Msa0008410	Msa0149000	0.824215	9.106811e-54	-8.615850e-47
Msa0015300	Msa0149000	0.849282	3.573428e-60	-8.615850e-47
Msa0018620	Msa0149000	0.854492	1.187424e-61	-8.615850e-47
Msa0032260	Msa0149000	0.802463	5.543174e-49	-8.615850e-47
Msa0055150	Msa0149000	0.818809	1.614394e-52	-8.615850e-47
Msa0057140	Msa0149000	0.816136	6.461578e-52	-8.615850e-47
Msa0068680	Msa0149000	0.804891	1.737369e-49	-8.615850e-47
Msa0073460	Msa0149000	0.815740	7.916526e-52	-8.615850e-47
Msa0076000	Msa0149000	0.843912	1.046441e-58	-8.615850e-47
Msa0084940	Msa0149000	0.820660	6.100999e-53	-8.615850e-47
Msa0085960	Msa0149000	0.808039	3.767607e-50	-8.615850e-47
Msa0089360	Msa0149000	0.836958	6.895050e-57	-8.615850e-47
Msa0092990	Msa0149000	0.802517	5.403274e-49	-8.615850e-47
Msa0094920	Msa0149000	0.828002	1.144962e-54	-8.615850e-47
Msa0100000	Msa0149000	0.838016	3.693108e-57	-8.615850e-47
Msa0121620	Msa0149000	0.825446	4.668191e-54	-8.615850e-47
Msa0147250	Msa0149000	0.803460	3.448777e-49	-8.615850e-47
Msa0149000	Msa0149340	0.809107	2.227972e-50	-8.615850e-47
Msa0149000	Msa0150800	0.812901	3.357249e-51	-8.615850e-47
Msa0149000	Msa0157100	0.809565	1.776723e-50	-8.615850e-47
Msa0149000	Msa0165970	0.828601	8.213295e-55	-8.615850e-47
Msa0149000	Msa0168720	0.804397	2.203519e-49	-8.615850e-47
Msa0149000	Msa0173990	0.801070	1.070937e-48	-8.615850e-47
Msa0149000	Msa0184020	0.802642	5.092655e-49	-8.615850e-47
Msa0149000	Msa0185590	0.817699	2.880328e-52	-8.615850e-47
Msa0149000	Msa0186890	0.811967	5.372148e-51	-8.615850e-47
Msa0149000	Msa0205850	0.804594	2.004242e-49	-8.615850e-47
Msa0149000	Msa0227400	0.820331	7.259115e-53	-8.615850e-47
Msa0149000	Msa0231880	0.823111	1.651803e-53	-8.615850e-47
Msa0149000	Msa0260210	0.824810	6.598454e-54	-8.615850e-47
Msa0149000	Msa0276920	0.805885	1.075305e-49	-8.615850e-47
Msa0149000	Msa0282250	0.810415	1.165787e-50	-8.615850e-47
Msa0149000	Msa0291500	0.820103	8.185379e-53	-8.615850e-47
Msa0149000	Msa0304290	0.826942	2.056698e-54	-8.615850e-47
Msa0149000	Msa0304330	0.827323	1.666595e-54	-8.615850e-47
Msa0149000	Msa0305890	0.822592	2.181823e-53	-8.615850e-47
Msa0149000	Msa0315240	0.802338	5.882795e-49	-8.615850e-47
Msa0149000	Msa0316910	0.805188	1.506185e-49	-8.615850e-47
Msa0149000	Msa0329350	0.819507	1.120180e-52	-8.615850e-47
Msa0149000	Msa0334040	0.800912	1.153739e-48	-8.615850e-47
Msa0149000	Msa0336250	0.801865	7.360292e-49	-8.615850e-47
Msa0149000	Msa0340810	0.819103	1.384517e-52	-8.615850e-47
Msa0149000	Msa0342100	0.801990	6.935478e-49	-8.615850e-47
Msa0149000	Msa0347360	0.800333	1.513701e-48	-8.615850e-47
Msa0149000	Msa0350990	0.809419	1.910120e-50	-8.615850e-47
Msa0149000	Msa0351030	0.808060	3.728027e-50	-8.615850e-47
Msa0149000	Msa0351080	0.806751	7.064856e-50	-8.615850e-47
Msa0149000	Msa0355270	0.835545	1.576510e-56	-8.615850e-47
Msa0149000	Msa0379640	0.800304	1.534459e-48	-8.615850e-47
Msa0149000	Msa0385580	0.810733	9.954825e-51	-8.615850e-47
Msa0149000	Msa0402330	0.840296	9.472055e-58	-8.615850e-47
Msa0149000	Msa0415810	0.815225	1.031101e-51	-8.615850e-47
Msa0149000	Msa0426330	0.816310	5.907761e-52	-8.615850e-47
Msa0149000	Msa0429290	0.804871	1.754297e-49	-8.615850e-47
Msa0149000	Msa0431670	0.813104	3.030116e-51	-8.615850e-47
Msa0149000	Msa0453690	0.813042	3.126171e-51	-8.615850e-47
Msa0149000	Msa0460930	0.817436	3.300222e-52	-8.615850e-47
Msa0149000	Msa0475580	0.800458	1.427790e-48	-8.615850e-47
Msa0149000	Msa0484780	0.820653	6.122929e-53	-8.615850e-47
Msa0149000	Msa0505770	0.805450	1.327053e-49	-8.615850e-47
Msa0149000	Msa0506890	0.818428	1.969929e-52	-8.615850e-47
Msa0149000	Msa0509390	0.800309	1.531289e-48	-8.615850e-47
Msa0149000	Msa0519220	0.801278	9.710241e-49	-8.615850e-47
Msa0149000	Msa0526890	0.843694	1.197067e-58	-8.615850e-47
Msa0149000	Msa0541860	0.815271	1.007189e-51	-8.615850e-47
Msa0149000	Msa0552810	0.804417	2.181735e-49	-8.615850e-47
Msa0149000	Msa0556790	0.818304	2.101545e-52	-8.615850e-47
Msa0149000	Msa0556860	0.828088	1.091871e-54	-8.615850e-47
Msa0149000	Msa0568820	0.815273	1.005719e-51	-8.615850e-47
Msa0149000	Msa0577220	0.825262	5.158205e-54	-8.615850e-47
Msa0149000	Msa0599580	0.800387	1.475811e-48	-8.615850e-47
Msa0149000	Msa0601290	0.844340	8.033095e-59	-8.615850e-47
Msa0149000	Msa0603540	0.805350	1.392783e-49	-8.615850e-47
Msa0149000	Msa0616020	0.844467	7.423406e-59	-8.615850e-47
Msa0149000	Msa0619070	0.818551	1.848239e-52	-8.615850e-47
Msa0149000	Msa0623700	0.837546	4.875665e-57	-8.615850e-47
Msa0149000	Msa0638070	0.804150	2.480558e-49	-8.615850e-47
Msa0149000	Msa0644840	0.825639	4.200751e-54	-8.615850e-47
Msa0149000	Msa0652300	0.816273	6.020785e-52	-8.615850e-47
Msa0149000	Msa0680240	0.854727	1.015409e-61	-8.615850e-47
Msa0149000	Msa0682780	0.817805	2.725945e-52	-8.615850e-47
Msa0149000	Msa0682900	0.808127	3.607813e-50	-8.615850e-47
Msa0149000	Msa0686080	0.813609	2.347034e-51	-8.615850e-47
Msa0149000	Msa0694840	0.819573	1.082059e-52	-8.615850e-47
Msa0149000	Msa0703230	0.812053	5.143466e-51	-8.615850e-47
Msa0149000	Msa0750350	0.806323	8.698898e-50	-8.615850e-47
Msa0149000	Msa0777990	0.802212	6.243570e-49	-8.615850e-47
Msa0149000	Msa0778520	0.807638	4.584427e-50	-8.615850e-47
Msa0149000	Msa0797120	0.805205	1.494039e-49	-8.615850e-47
Msa0149000	Msa0831870	0.802437	5.613964e-49	-8.615850e-47
Msa0149000	Msa0869120	0.811090	8.331150e-51	-8.615850e-47
Msa0149000	Msa0875620	0.819228	1.296889e-52	-8.615850e-47
Msa0149000	Msa0876200	0.822665	2.098197e-53	-8.615850e-47
Msa0149000	Msa0899230	0.800212	1.602082e-48	-8.615850e-47
Msa0149000	Msa0899290	0.824156	9.402091e-54	-8.615850e-47
Msa0149000	Msa0902760	0.818599	1.802516e-52	-8.615850e-47
Msa0149000	Msa0933310	0.801263	9.779653e-49	-8.615850e-47
Msa0149000	Msa0967370	0.829514	4.934337e-55	-8.615850e-47
Msa0149000	Msa0970030	0.825535	4.445833e-54	-8.615850e-47
Msa0149000	Msa0993530	0.800535	1.377237e-48	-8.615850e-47
Msa0149000	Msa1013400	0.821226	4.519282e-53	-8.615850e-47
Msa0149000	Msa1014420	0.808145	3.576699e-50	-8.615850e-47
Msa0149000	Msa1039880	0.805591	1.239508e-49	-8.615850e-47
Msa0149000	Msa1041520	0.807010	6.227758e-50	-8.615850e-47
Msa0149000	Msa1081560	0.807629	4.603412e-50	-8.615850e-47
Msa0149000	Msa1082500	0.821571	3.760969e-53	-8.615850e-47
Msa0149000	Msa1083210	0.804764	1.846998e-49	-8.615850e-47
Msa0149000	Msa1089840	0.825548	4.415556e-54	-8.615850e-47
Msa0149000	Msa1093530	0.816073	6.671968e-52	-8.615850e-47
Msa0149000	Msa1100720	0.809773	1.603496e-50	-8.615850e-47
Msa0149000	Msa1119540	0.807681	4.489555e-50	-8.615850e-47
Msa0149000	Msa1124310	0.818114	2.320336e-52	-8.615850e-47
Msa0149000	Msa1126770	0.816247	6.102524e-52	-8.615850e-47
Msa0149000	Msa1127830	0.829682	4.489361e-55	-8.615850e-47
Msa0149000	Msa1127890	0.834781	2.458225e-56	-8.615850e-47
Msa0149000	Msa1152990	0.804244	2.370875e-49	-8.615850e-47
Msa0149000	Msa1166410	0.815023	1.142951e-51	-8.615850e-47
Msa0149000	Msa1179460	0.814813	1.272300e-51	-8.615850e-47
Msa0149000	Msa1186560	0.836140	1.114354e-56	-8.615850e-47
Msa0149000	Msa1187840	0.836751	7.786625e-57	-8.615850e-47
Msa0149000	Msa1201120	0.830158	3.436801e-55	-8.615850e-47
Msa0149000	Msa1201560	0.836250	1.044620e-56	-8.615850e-47
Msa0149000	Msa1207270	0.840494	8.408422e-58	-8.615850e-47
Msa0149000	Msa1218600	0.811007	8.681819e-51	-8.615850e-47
Msa0149000	Msa1231240	0.819219	1.302905e-52	-8.615850e-47
Msa0149000	Msa1235740	0.825901	3.639467e-54	-8.615850e-47
Msa0149000	Msa1239770	0.811199	7.890701e-51	-8.615850e-47
Msa0149000	Msa1254710	0.812542	4.023443e-51	-8.615850e-47
Msa0149000	Msa1255040	-0.822739	2.016217e-53	-8.615850e-47
Msa0149000	Msa1267840	0.823364	1.441619e-53	-8.615850e-47
Msa0149000	Msa1269300	0.829176	5.959121e-55	-8.615850e-47
Msa0149000	Msa1282240	0.815221	1.032922e-51	-8.615850e-47
Msa0149000	Msa1283170	0.817807	2.722584e-52	-8.615850e-47
Msa0149000	Msa1294480	0.812020	5.229175e-51	-8.615850e-47
Msa0149000	Msa1295490	-0.829903	3.967473e-55	-8.615850e-47
Msa0149000	Msa1300870	0.818432	1.966644e-52	-8.615850e-47
Msa0149000	Msa1316780	0.805899	1.068202e-49	-8.615850e-47
Msa0149000	Msa1316830	0.810195	1.300824e-50	-8.615850e-47
Msa0149000	Msa1321360	0.840633	7.729576e-58	-8.615850e-47
Msa0149000	Msa1340650	0.808887	2.482683e-50	-8.615850e-47
Msa0149000	Msa1346370	0.800693	1.278414e-48	-8.615850e-47
Msa0149000	Msa1353470	0.800247	1.576445e-48	-8.615850e-47
Msa0149000	Msa1356440	0.823365	1.440279e-53	-8.615850e-47
Msa0149000	Msa1385670	0.807042	6.132455e-50	-8.615850e-47
Msa0149000	Msa1387420	0.804972	1.671254e-49	-8.615850e-47
Msa0149000	Msa1397810	0.835724	1.420464e-56	-8.615850e-47
Msa0149000	Msa1403930	-0.805333	1.404063e-49	-8.615850e-47
Msa0149000	Msa1435750	0.801670	8.071708e-49	-8.615850e-47
Msa0149000	Msa1442850	0.805213	1.487736e-49	-8.615850e-47
Msa0149000	Msa1465080	0.802978	4.340163e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0149000	MtrunA17_Chr1g0148991	100.000	122	0	0	1	122	1	122	7.22e-87	248

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0149000	AT5G25450.1	79.508	122	25	0	1	122	1	122	2.71e-69	204
Msa0149000	AT4G32470.1	77.869	122	27	0	1	122	1	122	1.59e-67	199
Msa0149000	AT5G25450.2	68.852	122	22	1	1	122	1	106	1.63e-54	166
Msa0149000	AT4G32470.2	77.000	100	23	0	1	100	1	100	8.51e-54	164
Msa0149000	AT5G25450.3	75.294	85	21	0	1	85	1	85	3.47e-43	137

Find 62 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGCTTGCCTTTATAATTTA+TGG	0.035401	1_4:-9477344	Msa0149000:three_prime_UTR
ACTAAACCCAAGTCATGTTT+TGG	0.262731	1_4:-9477093	Msa0149000:three_prime_UTR
GTATTACGATTTGGATATTA+AGG	0.274133	1_4:-9480875	Msa0149000:CDS
TATTGGAATCATTTCTTGTT+TGG	0.281572	1_4:-9477293	Msa0149000:three_prime_UTR
AGCTTTGATGAATCCTTATA+TGG	0.292613	1_4:-9477432	Msa0149000:three_prime_UTR
ACCGTATTTGCGAAGACGTT+TGG	0.293147	1_4:+9481011	None:intergenic
GTAGAGCAAGCGAGTATAAT+TGG	0.314381	1_4:-9481220	Msa0149000:five_prime_UTR
GATATATACTTGTTGAGTTT+AGG	0.317531	1_4:+9476889	None:intergenic
GTATCTTCCTGAGGATCTTC+AGG	0.339636	1_4:-9480767	Msa0149000:intron
ATGGAAGGGTTCGTTGATAC+AGG	0.347740	1_4:+9477559	None:intergenic
GCTCTATCTTTCTTCCATCT+TGG	0.353908	1_4:+9476981	None:intergenic
GTATGATCCGTATTACGATT+TGG	0.362212	1_4:-9480884	Msa0149000:CDS
GTGCTGTAAACTTCCCTCTT+GGG	0.363610	1_4:-9477395	Msa0149000:three_prime_UTR
GGTGCTGTAAACTTCCCTCT+TGG	0.368585	1_4:-9477396	Msa0149000:three_prime_UTR
TGTAGGGATGTATCTCAAAC+AGG	0.373729	1_4:+9476950	None:intergenic
AAAATGTCGTGATTGCAATT+TGG	0.374270	1_4:-9477012	Msa0149000:three_prime_UTR
TCCAAACGTCTTCGCAAATA+CGG	0.376472	1_4:-9481012	Msa0149000:intron
TGACTTGGGTTTAGTAATTA+CGG	0.384123	1_4:+9477101	None:intergenic
ACTATTGTGGTAGAATGTTT+TGG	0.384621	1_4:-9477475	Msa0149000:three_prime_UTR
ATGCAAGCCATAAATTATAA+AGG	0.391641	1_4:+9477337	None:intergenic
GATACTACTCAATGCACTTA+TGG	0.400156	1_4:+9477540	None:intergenic
TTTGGTTGATGATGAAATCT+TGG	0.409251	1_4:-9477457	Msa0149000:three_prime_UTR
CGAGCATCAACAACCTCCTT+TGG	0.426514	1_4:+9480835	None:intergenic
ATCTTTCTTCCATCTTGGCA+TGG	0.434373	1_4:+9476986	None:intergenic
CGAGCAGAGCGTGAAGCATT+GGG	0.452428	1_4:-9477591	Msa0149000:CDS
AAACACCCCAAAACATGACT+TGG	0.463582	1_4:+9477086	None:intergenic
ACGAGCAGAGCGTGAAGCAT+TGG	0.467463	1_4:-9477592	Msa0149000:CDS
AGGAAGATACTCATGCTTCA+TGG	0.469418	1_4:+9480780	None:intergenic
TTAATATCCAAATCGTAATA+CGG	0.475035	1_4:+9480877	None:intergenic
AAAGATGGAGTGATTGTTCA+AGG	0.477184	1_4:-9477211	Msa0149000:three_prime_UTR
AGGCAATGCAAACACCATTC+AGG	0.479539	1_4:-9479694	Msa0149000:CDS
AGACTTACCAAAATAAAAGA+TGG	0.500296	1_4:-9477226	Msa0149000:three_prime_UTR
ATGATTCCAATAAAGACAAT+GGG	0.502666	1_4:+9477304	None:intergenic
ATCCTGTAAAATAAAATTTG+TGG	0.510918	1_4:-9477045	Msa0149000:three_prime_UTR
AATGATTCCAATAAAGACAA+TGG	0.521916	1_4:+9477303	None:intergenic
ACCATTCAGGAGCTACCTTC+AGG	0.525111	1_4:-9479681	Msa0149000:CDS
CATAAATTATAAAGGCAAGC+AGG	0.528208	1_4:+9477345	None:intergenic
TCCTGAAGGTAGCTCCTGAA+TGG	0.529425	1_4:+9479680	None:intergenic
GGCTTTGAATCGGCTTCCAA+AGG	0.532273	1_4:-9480851	Msa0149000:CDS
TTCTATTAGCGTGCGAAATG+TGG	0.537300	1_4:-9477158	Msa0149000:three_prime_UTR
ATATTAAGGAGGCTTTGAAT+CGG	0.539685	1_4:-9480861	Msa0149000:CDS
CGCAGGGGATATATATGTGT+AGG	0.545037	1_4:+9476933	None:intergenic
TGGAAGGGTTCGTTGATACA+GGG	0.545179	1_4:+9477560	None:intergenic
AAACCAACCTGAAGATCCTC+AGG	0.545207	1_4:+9480760	None:intergenic
GTTAAAATGTACTACTATTG+TGG	0.547187	1_4:-9477488	Msa0149000:three_prime_UTR
CTACTCAATGCACTTATGGA+AGG	0.548246	1_4:+9477544	None:intergenic
CCCACAACTTTCAGGTGAAG+AGG	0.552074	1_4:-9477617	Msa0149000:intron
TGTAAAATAAAATTTGTGGT+TGG	0.562027	1_4:-9477041	Msa0149000:three_prime_UTR
TTTGAATCGGCTTCCAAAGG+AGG	0.563776	1_4:-9480848	Msa0149000:CDS
AACACCCCAAAACATGACTT+GGG	0.568072	1_4:+9477087	None:intergenic
CCACAACTTTCAGGTGAAGA+GGG	0.574657	1_4:-9477616	Msa0149000:intron
TTACGATTTGGATATTAAGG+AGG	0.584001	1_4:-9480872	Msa0149000:CDS
GCAGGGGATATATATGTGTA+GGG	0.593915	1_4:+9476934	None:intergenic
TACTCAATGCACTTATGGAA+GGG	0.601615	1_4:+9477545	None:intergenic
ATTTGGTGTCCATGCCAAGA+TGG	0.612707	1_4:-9476995	Msa0149000:three_prime_UTR
CAAAAGTCAGCATATCCTGA+AGG	0.618820	1_4:+9479666	None:intergenic
TTTATTAGAAAATGCCCAAG+AGG	0.624070	1_4:+9477381	None:intergenic
TTATTAGAAAATGCCCAAGA+GGG	0.630597	1_4:+9477382	None:intergenic
GGAAGGGTTCGTTGATACAG+GGG	0.637021	1_4:+9477561	None:intergenic
GCAGAGCGTGAAGCATTGGG+AGG	0.668632	1_4:-9477588	Msa0149000:CDS
GAAGCATGAGTATCTTCCTG+AGG	0.684541	1_4:-9480776	Msa0149000:CDS
GTAGGGATGTATCTCAAACA+GGG	0.704220	1_4:+9476951	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACAAATGTTTAATAAAAAA+AGG	+	chr1_4:9478623-9478642	None:intergenic	10.0%
!!	AAATACAATTTCACAAATTA+GGG	+	chr1_4:9477196-9477215	None:intergenic	15.0%
!!!	AATACAAAATTGAATGTTTT+TGG	-	chr1_4:9477413-9477432	Msa0149000:three_prime_UTR	15.0%
!!!	TGTTTTGATATAACATTATA+TGG	-	chr1_4:9478572-9478591	Msa0149000:intron	15.0%
!!!	TATACAAATCTTTGAAAATA+AGG	+	chr1_4:9479017-9479036	None:intergenic	15.0%
!!!	TTATTTTCAAAGATTTGTAT+AGG	-	chr1_4:9479016-9479035	Msa0149000:intron	15.0%
!!!	CAATATTTTTGTAATTCATT+GGG	-	chr1_4:9479125-9479144	Msa0149000:intron	15.0%
!!!	GAAATGATTTTATAATTGTT+TGG	+	chr1_4:9480013-9480032	None:intergenic	15.0%
!!	AAAAAACGAAATGAAGATTT+AGG	+	chr1_4:9477161-9477180	None:intergenic	20.0%
!!	CAAATACAATTTCACAAATT+AGG	+	chr1_4:9477197-9477216	None:intergenic	20.0%
!!!	TGTATTTGATTTGTGAAATT+AGG	-	chr1_4:9477209-9477228	Msa0149000:three_prime_UTR	20.0%
!!!	GTATTTGATTTGTGAAATTA+GGG	-	chr1_4:9477210-9477229	Msa0149000:three_prime_UTR	20.0%
!!	TTAATATCCAAATCGTAATA+CGG	+	chr1_4:9477260-9477279	None:intergenic	20.0%
!!	AACAATAACATATGAAACAT+GGG	-	chr1_4:9477589-9477608	Msa0149000:CDS	20.0%
!!	TTTATTTCATTTCACATTTG+AGG	-	chr1_4:9477888-9477907	Msa0149000:intron	20.0%
!!!	TCATTTGATTACTATTTTCA+AGG	+	chr1_4:9479090-9479109	None:intergenic	20.0%
!!	TCAAATGAAGAAGAAAAAAA+AGG	-	chr1_4:9479102-9479121	Msa0149000:intron	20.0%
!!!	GCAATATTTTTGTAATTCAT+TGG	-	chr1_4:9479124-9479143	Msa0149000:intron	20.0%
!!	TATTTAACATGCTAACTAAT+AGG	-	chr1_4:9479895-9479914	Msa0149000:intron	20.0%
!!	ATTTAACATGCTAACTAATA+GGG	-	chr1_4:9479896-9479915	Msa0149000:intron	20.0%
!!	TTTCTATTCAACTAAATGAA+AGG	-	chr1_4:9479952-9479971	Msa0149000:intron	20.0%
!!	TAAAATCTAACAAGTAAGAT+GGG	+	chr1_4:9480158-9480177	None:intergenic	20.0%
!!	ATAAAATCTAACAAGTAAGA+TGG	+	chr1_4:9480159-9480178	None:intergenic	20.0%
!!!	TTAGATTTTATTTTGATGAG+TGG	-	chr1_4:9480168-9480187	Msa0149000:intron	20.0%
!!!	AATGTGGAATATTATTTTAC+AGG	-	chr1_4:9480992-9481011	Msa0149000:intron	20.0%
!!	ATCCTGTAAAATAAAATTTG+TGG	-	chr1_4:9481089-9481108	Msa0149000:exon	20.0%
!!!	AACCACAAATTTTATTTTAC+AGG	+	chr1_4:9481094-9481113	None:intergenic	20.0%
!!	TGTAAAATAAAATTTGTGGT+TGG	-	chr1_4:9481093-9481112	Msa0149000:exon	20.0%
!!	TTAAACCGAGAGAATTTTTA+GGG	-	chr1_4:9476942-9476961	Msa0149000:three_prime_UTR	25.0%
!!	GTATTACGATTTGGATATTA+AGG	-	chr1_4:9477259-9477278	Msa0149000:three_prime_UTR	25.0%
!!	TGTGTTTGTATTGATAGAAA+TGG	-	chr1_4:9477503-9477522	Msa0149000:three_prime_UTR	25.0%
!	GAACAATAACATATGAAACA+TGG	-	chr1_4:9477588-9477607	Msa0149000:CDS	25.0%
!	AAATTTATTGAAAGTCCTTG+TGG	-	chr1_4:9477749-9477768	Msa0149000:intron	25.0%
!	AATAGAATCAAATAACGAGA+TGG	-	chr1_4:9477812-9477831	Msa0149000:intron	25.0%
!	ATAGAATCAAATAACGAGAT+GGG	-	chr1_4:9477813-9477832	Msa0149000:intron	25.0%
!	GAAATAAAATGCATTTCACA+AGG	+	chr1_4:9477876-9477895	None:intergenic	25.0%
!!!	GGATAGTTTTACAATAAAAG+TGG	+	chr1_4:9478124-9478143	None:intergenic	25.0%
!	ACACATTCTCATTTATTGTT+TGG	+	chr1_4:9478145-9478164	None:intergenic	25.0%
!	GAAGATCTAAATATCTTGTT+TGG	-	chr1_4:9478328-9478347	Msa0149000:intron	25.0%
!!	TAAATATCTTGTTTGGTATG+TGG	-	chr1_4:9478335-9478354	Msa0149000:intron	25.0%
!	ACTGTCAAACATATAAAACA+AGG	+	chr1_4:9478500-9478519	None:intergenic	25.0%
!	GATACGATTGAAGTATATTT+GGG	+	chr1_4:9478707-9478726	None:intergenic	25.0%
!	CAATCTAAGCAATGTATTTA+AGG	+	chr1_4:9478729-9478748	None:intergenic	25.0%
!!	TGCTACTATATTTGTTGAAA+TGG	+	chr1_4:9478781-9478800	None:intergenic	25.0%
!	CAAATATAGTAGCATAATTG+AGG	-	chr1_4:9478787-9478806	Msa0149000:intron	25.0%
!	AGCAAATATGAACTAACAAA+AGG	+	chr1_4:9478880-9478899	None:intergenic	25.0%
!	TCAAAGATTTGTATAGGAAA+AGG	-	chr1_4:9479022-9479041	Msa0149000:intron	25.0%
!!	GTAAAATTTGAAGGGTTTTT+GGG	+	chr1_4:9479246-9479265	None:intergenic	25.0%
!	TTAGTTGAATAGAAAATGAG+AGG	+	chr1_4:9479947-9479966	None:intergenic	25.0%
!	AAAATGGAACAAAAACAACA+AGG	+	chr1_4:9480052-9480071	None:intergenic	25.0%
!!	TATTGCTATTACACTTAGTT+TGG	+	chr1_4:9480084-9480103	None:intergenic	25.0%
!	TTCATTGAATGGAATTCATA+TGG	-	chr1_4:9480232-9480251	Msa0149000:intron	25.0%
!	TCATTGAATGGAATTCATAT+GGG	-	chr1_4:9480233-9480252	Msa0149000:intron	25.0%
!	TTAGCAGGTAAAATTTATCT+GGG	+	chr1_4:9480281-9480300	None:intergenic	25.0%
!!!	GTAGCAAAAAGTGTTATTTT+TGG	-	chr1_4:9480445-9480464	Msa0149000:intron	25.0%
!	GTTAAAATGTACTACTATTG+TGG	-	chr1_4:9480646-9480665	Msa0149000:intron	25.0%
!	AAAAAAATGTGGTCCATATA+AGG	+	chr1_4:9480718-9480737	None:intergenic	25.0%
!!!	TTATATGGACCACATTTTTT+TGG	-	chr1_4:9480717-9480736	Msa0149000:intron	25.0%
!	ATGCAAGCCATAAATTATAA+AGG	+	chr1_4:9480800-9480819	None:intergenic	25.0%
!!	ATTTTACCCATTGTCTTTAT+TGG	-	chr1_4:9480824-9480843	Msa0149000:CDS	25.0%
!	ATGATTCCAATAAAGACAAT+GGG	+	chr1_4:9480833-9480852	None:intergenic	25.0%
!	AATGATTCCAATAAAGACAA+TGG	+	chr1_4:9480834-9480853	None:intergenic	25.0%
!	TATTGGAATCATTTCTTGTT+TGG	-	chr1_4:9480841-9480860	Msa0149000:CDS	25.0%
!	AGACTTACCAAAATAAAAGA+TGG	-	chr1_4:9480908-9480927	Msa0149000:intron	25.0%
!!!	AATCACTCCATCTTTTATTT+TGG	+	chr1_4:9480918-9480937	None:intergenic	25.0%
!	GTTAAACCGAGAGAATTTTT+AGG	-	chr1_4:9476941-9476960	Msa0149000:three_prime_UTR	30.0%
	GAACACAAAAAACTCAACAA+TGG	-	chr1_4:9477031-9477050	Msa0149000:three_prime_UTR	30.0%
	TTGTAGATCCAAAGAAAAAC+TGG	-	chr1_4:9477072-9477091	Msa0149000:three_prime_UTR	30.0%
!	TTACGATTTGGATATTAAGG+AGG	-	chr1_4:9477262-9477281	Msa0149000:three_prime_UTR	30.0%
!!	ATATTAAGGAGGCTTTGAAT+CGG	-	chr1_4:9477273-9477292	Msa0149000:three_prime_UTR	30.0%
	CTAGATGAAGCTTGATAAAT+TGG	-	chr1_4:9477463-9477482	Msa0149000:three_prime_UTR	30.0%
	AAATTGGTTGAAAACTGTTG+TGG	-	chr1_4:9477479-9477498	Msa0149000:three_prime_UTR	30.0%
	AATTGGTTGAAAACTGTTGT+GGG	-	chr1_4:9477480-9477499	Msa0149000:three_prime_UTR	30.0%
	AATAGATAAACACATCCACA+AGG	+	chr1_4:9477767-9477786	None:intergenic	30.0%
	TGGATGTGTTTATCTATTGA+CGG	-	chr1_4:9477769-9477788	Msa0149000:intron	30.0%
	TGTTTATCTATTGACGGAAA+TGG	-	chr1_4:9477775-9477794	Msa0149000:intron	30.0%
!	TCATTTTGCTTTCTCCAATT+TGG	-	chr1_4:9478055-9478074	Msa0149000:intron	30.0%
!	TCCAATTTGGAGGTATAAAA+AGG	-	chr1_4:9478068-9478087	Msa0149000:intron	30.0%
!	TCCTTTTTATACCTCCAAAT+TGG	+	chr1_4:9478072-9478091	None:intergenic	30.0%
!	GATTTTCTGTGAACATACTT+TGG	-	chr1_4:9478268-9478287	Msa0149000:intron	30.0%
	AGTAACTAATTGTGTGATTG+TGG	-	chr1_4:9478542-9478561	Msa0149000:intron	30.0%
	GTAACTAATTGTGTGATTGT+GGG	-	chr1_4:9478543-9478562	Msa0149000:intron	30.0%
	AAAAAGGCAATCAAGAAGTA+TGG	+	chr1_4:9478607-9478626	None:intergenic	30.0%
	GGATACGATTGAAGTATATT+TGG	+	chr1_4:9478708-9478727	None:intergenic	30.0%
	GCTTAGATTGTTAGAAATCT+TGG	-	chr1_4:9478739-9478758	Msa0149000:intron	30.0%
!	TTCATATTTGCTAGAGTAGA+TGG	-	chr1_4:9478888-9478907	Msa0149000:intron	30.0%
	TTAACAGGGTATATGACTAA+TGG	-	chr1_4:9479169-9479188	Msa0149000:intron	30.0%
	TTAATACCGTTTACTTGTGT+GGG	+	chr1_4:9479210-9479229	None:intergenic	30.0%
	TTTAATACCGTTTACTTGTG+TGG	+	chr1_4:9479211-9479230	None:intergenic	30.0%
	CAAGTAAACGGTATTAAACA+TGG	-	chr1_4:9479213-9479232	Msa0149000:intron	30.0%
!	GGTAAAATTTGAAGGGTTTT+TGG	+	chr1_4:9479247-9479266	None:intergenic	30.0%
	AAAGTGAAACTTCTAGACTA+GGG	+	chr1_4:9479269-9479288	None:intergenic	30.0%
	TAAAGTGAAACTTCTAGACT+AGG	+	chr1_4:9479270-9479289	None:intergenic	30.0%
	TACATAGTTTCTGATGCATA+TGG	-	chr1_4:9479470-9479489	Msa0149000:intron	30.0%
	ACATAGTTTCTGATGCATAT+GGG	-	chr1_4:9479471-9479490	Msa0149000:intron	30.0%
!	TTTAGTAGAACTTTTGCACA+TGG	-	chr1_4:9479511-9479530	Msa0149000:intron	30.0%
	TTGGATGCAGTTTAGATTTA+GGG	-	chr1_4:9479537-9479556	Msa0149000:intron	30.0%
	GGAAATAGAAGAAAAGAAAG+TGG	+	chr1_4:9479567-9479586	None:intergenic	30.0%
	TAGAAAAAACACCTAGATCA+AGG	+	chr1_4:9479614-9479633	None:intergenic	30.0%
	AATTCAGAAGCAATAGCTTA+AGG	+	chr1_4:9479683-9479702	None:intergenic	30.0%
	CACCATAAGAAATTTGTGAA+GGG	-	chr1_4:9479781-9479800	Msa0149000:intron	30.0%
	ATCCCTTCACAAATTTCTTA+TGG	+	chr1_4:9479786-9479805	None:intergenic	30.0%
	CATTGAATGGAATTCATATG+GGG	-	chr1_4:9480234-9480253	Msa0149000:intron	30.0%
	CTTAGCAGGTAAAATTTATC+TGG	+	chr1_4:9480282-9480301	None:intergenic	30.0%
	CATCACATATAGCAGTTATA+GGG	+	chr1_4:9480482-9480501	None:intergenic	30.0%
!!!	GAAGCTATTTTGATTGGAAT+TGG	-	chr1_4:9480621-9480640	Msa0149000:intron	30.0%
!	ACTATTGTGGTAGAATGTTT+TGG	-	chr1_4:9480659-9480678	Msa0149000:intron	30.0%
!!	TTTGGTTGATGATGAAATCT+TGG	-	chr1_4:9480677-9480696	Msa0149000:intron	30.0%
!	AGCTTTGATGAATCCTTATA+TGG	-	chr1_4:9480702-9480721	Msa0149000:intron	30.0%
	TTTACAGCACCAAAAAAATG+TGG	+	chr1_4:9480729-9480748	None:intergenic	30.0%
	TTATTAGAAAATGCCCAAGA+GGG	+	chr1_4:9480755-9480774	None:intergenic	30.0%
	TTTATTAGAAAATGCCCAAG+AGG	+	chr1_4:9480756-9480775	None:intergenic	30.0%
!	CTTGGGCATTTTCTAATAAA+TGG	-	chr1_4:9480756-9480775	Msa0149000:intron	30.0%
	CATAAATTATAAAGGCAAGC+AGG	+	chr1_4:9480792-9480811	None:intergenic	30.0%
	CTGCTTGCCTTTATAATTTA+TGG	-	chr1_4:9480790-9480809	Msa0149000:CDS	30.0%
!	TGACTTGGGTTTAGTAATTA+CGG	+	chr1_4:9481036-9481055	None:intergenic	30.0%
	AAAATGTCGTGATTGCAATT+TGG	-	chr1_4:9481122-9481141	Msa0149000:five_prime_UTR	30.0%
	TTCAGCCCTAAAAATTCTCT+CGG	+	chr1_4:9476950-9476969	None:intergenic	35.0%
	GTATGATCCGTATTACGATT+TGG	-	chr1_4:9477250-9477269	Msa0149000:three_prime_UTR	35.0%
	TTGATGTCTATACAACCACA+AGG	-	chr1_4:9477986-9478005	Msa0149000:intron	35.0%
	GATATAAGAAAAACTCCCAG+AGG	+	chr1_4:9478023-9478042	None:intergenic	35.0%
!	TTTTGCTTTCTCCAATTTGG+AGG	-	chr1_4:9478058-9478077	Msa0149000:intron	35.0%
	CTATTTCATTGTACTGTCAC+TGG	-	chr1_4:9478168-9478187	Msa0149000:intron	35.0%
	AGTGCATACATAATCTCTAC+AGG	-	chr1_4:9478199-9478218	Msa0149000:intron	35.0%
	CCTGTCAAAAACAGATACAA+AGG	+	chr1_4:9478423-9478442	None:intergenic	35.0%
!!!	CCTTTGTATCTGTTTTTGAC+AGG	-	chr1_4:9478420-9478439	Msa0149000:intron	35.0%
	ATTACTTCCTTTGCTTGTCT+TGG	-	chr1_4:9478671-9478690	Msa0149000:intron	35.0%
	GAAAACAGAAATACAGACAC+AGG	+	chr1_4:9478946-9478965	None:intergenic	35.0%
!!	CAGCAGAGTTTGTTTTCATT+GGG	-	chr1_4:9479052-9479071	Msa0149000:intron	35.0%
	ACATATAGATGGGTCTTAAC+AGG	-	chr1_4:9479154-9479173	Msa0149000:intron	35.0%
	CATATAGATGGGTCTTAACA+GGG	-	chr1_4:9479155-9479174	Msa0149000:intron	35.0%
	TAATACCGTTTACTTGTGTG+GGG	+	chr1_4:9479209-9479228	None:intergenic	35.0%
	GACTAGGGGTAAAATTTGAA+GGG	+	chr1_4:9479254-9479273	None:intergenic	35.0%
	AGACTAGGGGTAAAATTTGA+AGG	+	chr1_4:9479255-9479274	None:intergenic	35.0%
	AAGTGAAACTTCTAGACTAG+GGG	+	chr1_4:9479268-9479287	None:intergenic	35.0%
	TGATTGCTATGTCTTTAGCA+GGG	+	chr1_4:9479301-9479320	None:intergenic	35.0%
	ATGATTGCTATGTCTTTAGC+AGG	+	chr1_4:9479302-9479321	None:intergenic	35.0%
	TGCTAAAGACATAGCAATCA+TGG	-	chr1_4:9479301-9479320	Msa0149000:intron	35.0%
	GCTAAAGACATAGCAATCAT+GGG	-	chr1_4:9479302-9479321	Msa0149000:intron	35.0%
!	ACTCTAACGCATTGATAAGT+TGG	-	chr1_4:9479425-9479444	Msa0149000:intron	35.0%
!	AACGCATTGATAAGTTGGAT+TGG	-	chr1_4:9479430-9479449	Msa0149000:intron	35.0%
	GTTGGATGCAGTTTAGATTT+AGG	-	chr1_4:9479536-9479555	Msa0149000:intron	35.0%
	ATCAAGGATACACACATAGA+TGG	+	chr1_4:9479598-9479617	None:intergenic	35.0%
	TATGTGTGTATCCTTGATCT+AGG	-	chr1_4:9479600-9479619	Msa0149000:intron	35.0%
	ATAGCTTAAGGTCTTCAACT+GGG	+	chr1_4:9479671-9479690	None:intergenic	35.0%
	AATAGCTTAAGGTCTTCAAC+TGG	+	chr1_4:9479672-9479691	None:intergenic	35.0%
	GACACATAATTCTACCATAG+TGG	+	chr1_4:9479746-9479765	None:intergenic	35.0%
	CCTTCACAAATTTCTTATGG+TGG	+	chr1_4:9479783-9479802	None:intergenic	35.0%
	CCACCATAAGAAATTTGTGA+AGG	-	chr1_4:9479780-9479799	Msa0149000:intron	35.0%
!	AGTTTGGATGGTGATGAAAA+TGG	+	chr1_4:9480068-9480087	None:intergenic	35.0%
!	GCTATTACACTTAGTTTGGA+TGG	+	chr1_4:9480080-9480099	None:intergenic	35.0%
!!!	TTTATTTTGATGAGTGGTGC+TGG	-	chr1_4:9480174-9480193	Msa0149000:intron	35.0%
	AAGAGTGAGTGCTAAAAAGA+GGG	+	chr1_4:9480213-9480232	None:intergenic	35.0%
	AAAGAGTGAGTGCTAAAAAG+AGG	+	chr1_4:9480214-9480233	None:intergenic	35.0%
	GCATCACATATAGCAGTTAT+AGG	+	chr1_4:9480483-9480502	None:intergenic	35.0%
	TACTCAATGCACTTATGGAA+GGG	+	chr1_4:9480592-9480611	None:intergenic	35.0%
	GATACTACTCAATGCACTTA+TGG	+	chr1_4:9480597-9480616	None:intergenic	35.0%
!!!	TCGCTTGAAGCTATTTTGAT+TGG	-	chr1_4:9480615-9480634	Msa0149000:intron	35.0%
	AAAGATGGAGTGATTGTTCA+AGG	-	chr1_4:9480923-9480942	Msa0149000:intron	35.0%
!	ACTAAACCCAAGTCATGTTT+TGG	-	chr1_4:9481041-9481060	Msa0149000:CDS	35.0%
!	CTAAACCCAAGTCATGTTTT+GGG	-	chr1_4:9481042-9481061	Msa0149000:CDS	35.0%
!	TAAACCCAAGTCATGTTTTG+GGG	-	chr1_4:9481043-9481062	Msa0149000:CDS	35.0%
!	TTGCAATCACGACATTTTCA+GGG	+	chr1_4:9481120-9481139	None:intergenic	35.0%
!	ATTGCAATCACGACATTTTC+AGG	+	chr1_4:9481121-9481140	None:intergenic	35.0%
!!!	CACTGATTTTATATTCGCAG+GGG	+	chr1_4:9481219-9481238	None:intergenic	35.0%
!!!	GCACTGATTTTATATTCGCA+GGG	+	chr1_4:9481220-9481239	None:intergenic	35.0%
!!!	TGCACTGATTTTATATTCGC+AGG	+	chr1_4:9481221-9481240	None:intergenic	35.0%
	GTAGAGCAAGCGAGTATAAT+TGG	-	chr1_4:9476914-9476933	Msa0149000:three_prime_UTR	40.0%
	TCCAAACGTCTTCGCAAATA+CGG	-	chr1_4:9477122-9477141	Msa0149000:three_prime_UTR	40.0%
	AGGAAGATACTCATGCTTCA+TGG	+	chr1_4:9477357-9477376	None:intergenic	40.0%
!!	TGTAGCACTGACACTTTCAA+TGG	+	chr1_4:9477716-9477735	None:intergenic	40.0%
!!	TGAAAGTGTCAGTGCTACAT+AGG	-	chr1_4:9477717-9477736	Msa0149000:intron	40.0%
!!	GAAAGTGTCAGTGCTACATA+GGG	-	chr1_4:9477718-9477737	Msa0149000:intron	40.0%
	AGCAAATGCTGTCTCAATTG+TGG	-	chr1_4:9477942-9477961	Msa0149000:intron	40.0%
	AAGGTAGAGTTAGATCCTCT+GGG	-	chr1_4:9478005-9478024	Msa0149000:intron	40.0%
	CAAAAGTCAGCATATCCTGA+AGG	+	chr1_4:9478471-9478490	None:intergenic	40.0%
	AAGACAACCAAGACAAGCAA+AGG	+	chr1_4:9478681-9478700	None:intergenic	40.0%
	CCAATGAAAACAAACTCTGC+TGG	+	chr1_4:9479054-9479073	None:intergenic	40.0%
!!	CCAGCAGAGTTTGTTTTCAT+TGG	-	chr1_4:9479051-9479070	Msa0149000:intron	40.0%
	AAGACCCATCTATATGTGCA+GGG	+	chr1_4:9479151-9479170	None:intergenic	40.0%
	TAAGACCCATCTATATGTGC+AGG	+	chr1_4:9479152-9479171	None:intergenic	40.0%
!	GAACTTTTGCACATGGAAGT+TGG	-	chr1_4:9479518-9479537	Msa0149000:intron	40.0%
!	CACTGTCCAGTGTTGTTAAA+TGG	-	chr1_4:9479708-9479727	Msa0149000:intron	40.0%
!	TGTCCAGTGTTGTTAAATGG+TGG	-	chr1_4:9479711-9479730	Msa0149000:intron	40.0%
	TGACCACCATTTAACAACAC+TGG	+	chr1_4:9479717-9479736	None:intergenic	40.0%
!	GTGTTGTTAAATGGTGGTCA+TGG	-	chr1_4:9479717-9479736	Msa0149000:intron	40.0%
	AAAACCTGCCGTATAACCAA+TGG	+	chr1_4:9479826-9479845	None:intergenic	40.0%
!	TTGGTTATACGGCAGGTTTT+TGG	-	chr1_4:9479826-9479845	Msa0149000:intron	40.0%
	AGAGTGAGTGCTAAAAAGAG+GGG	+	chr1_4:9480212-9480231	None:intergenic	40.0%
	GCACTCACTCTTTCATTGAA+TGG	-	chr1_4:9480221-9480240	Msa0149000:intron	40.0%
	TATGGGGCTCATTTGTAGAA+TGG	-	chr1_4:9480250-9480269	Msa0149000:intron	40.0%
	TCAACATTCACTCTCTTAGC+AGG	+	chr1_4:9480296-9480315	None:intergenic	40.0%
	GAGAGACATTCTTATGTGCT+TGG	+	chr1_4:9480375-9480394	None:intergenic	40.0%
!	CTTTTCAACCCACAACTTTC+AGG	-	chr1_4:9480509-9480528	Msa0149000:intron	40.0%
	CTACTCAATGCACTTATGGA+AGG	+	chr1_4:9480593-9480612	None:intergenic	40.0%
	TTCTATTAGCGTGCGAAATG+TGG	-	chr1_4:9480976-9480995	Msa0149000:intron	40.0%
	AACACCCCAAAACATGACTT+GGG	+	chr1_4:9481050-9481069	None:intergenic	40.0%
	AAACACCCCAAAACATGACT+TGG	+	chr1_4:9481051-9481070	None:intergenic	40.0%
!!!	AAGTCATGTTTTGGGGTGTT+TGG	-	chr1_4:9481050-9481069	Msa0149000:CDS	40.0%
	ATCTTTCTTCCATCTTGGCA+TGG	+	chr1_4:9481151-9481170	None:intergenic	40.0%
	GCTCTATCTTTCTTCCATCT+TGG	+	chr1_4:9481156-9481175	None:intergenic	40.0%
	GTAGGGATGTATCTCAAACA+GGG	+	chr1_4:9481186-9481205	None:intergenic	40.0%
	TGTAGGGATGTATCTCAAAC+AGG	+	chr1_4:9481187-9481206	None:intergenic	40.0%
	GCAGGGGATATATATGTGTA+GGG	+	chr1_4:9481203-9481222	None:intergenic	40.0%
!	GCAGCGAACCAGTTTTTCTT+TGG	+	chr1_4:9477083-9477102	None:intergenic	45.0%
	ACCGTATTTGCGAAGACGTT+TGG	+	chr1_4:9477126-9477145	None:intergenic	45.0%
!	TTTGAATCGGCTTCCAAAGG+AGG	-	chr1_4:9477286-9477305	Msa0149000:three_prime_UTR	45.0%
	GAAGCATGAGTATCTTCCTG+AGG	-	chr1_4:9477358-9477377	Msa0149000:three_prime_UTR	45.0%
	GTATCTTCCTGAGGATCTTC+AGG	-	chr1_4:9477367-9477386	Msa0149000:three_prime_UTR	45.0%
	AAACCAACCTGAAGATCCTC+AGG	+	chr1_4:9477377-9477396	None:intergenic	45.0%
!!	TGAGGATCTTCAGGTTGGTT+TGG	-	chr1_4:9477376-9477395	Msa0149000:three_prime_UTR	45.0%
	GAGGATCTAACTCTACCTTG+TGG	+	chr1_4:9478004-9478023	None:intergenic	45.0%
	CAAGGTAGAGTTAGATCCTC+TGG	-	chr1_4:9478004-9478023	Msa0149000:intron	45.0%
	ACAACAGTACACTGCACAAG+TGG	+	chr1_4:9478248-9478267	None:intergenic	45.0%
	AGGCAATGCAAACACCATTC+AGG	-	chr1_4:9478440-9478459	Msa0149000:intron	45.0%
	ATGTGCCCCACACAAGTAAA+CGG	-	chr1_4:9479201-9479220	Msa0149000:intron	45.0%
	GACATAGCAATCATGGGTCA+TGG	-	chr1_4:9479308-9479327	Msa0149000:intron	45.0%
	ATGGCAGTTGATTGTGAGGA+AGG	-	chr1_4:9479327-9479346	Msa0149000:intron	45.0%
	ATTGTGAGGAAGGATTCCAG+AGG	-	chr1_4:9479337-9479356	Msa0149000:intron	45.0%
	GATACACACATAGATGGCAG+GGG	+	chr1_4:9479592-9479611	None:intergenic	45.0%
	GGATACACACATAGATGGCA+GGG	+	chr1_4:9479593-9479612	None:intergenic	45.0%
	AGGATACACACATAGATGGC+AGG	+	chr1_4:9479594-9479613	None:intergenic	45.0%
	AACTGGGAGTGGTTCTCTAT+GGG	+	chr1_4:9479655-9479674	None:intergenic	45.0%
	TTAAGGTCTTCAACTGGGAG+TGG	+	chr1_4:9479666-9479685	None:intergenic	45.0%
	GAGTGAGTGCTAAAAAGAGG+GGG	+	chr1_4:9480211-9480230	None:intergenic	45.0%
	CCTCTTCACCTGAAAGTTGT+GGG	+	chr1_4:9480520-9480539	None:intergenic	45.0%
!	CCACAACTTTCAGGTGAAGA+GGG	-	chr1_4:9480518-9480537	Msa0149000:intron	45.0%
	TGGAAGGGTTCGTTGATACA+GGG	+	chr1_4:9480577-9480596	None:intergenic	45.0%
	ATGGAAGGGTTCGTTGATAC+AGG	+	chr1_4:9480578-9480597	None:intergenic	45.0%
	GTGCTGTAAACTTCCCTCTT+GGG	-	chr1_4:9480739-9480758	Msa0149000:intron	45.0%
!!	ATTTGGTGTCCATGCCAAGA+TGG	-	chr1_4:9481139-9481158	Msa0149000:five_prime_UTR	45.0%
	CGCAGGGGATATATATGTGT+AGG	+	chr1_4:9481204-9481223	None:intergenic	45.0%
!!!	AACATTTTTATAAATAAAAA+AGG	+	chr1_4:9478992-9479011	None:intergenic	5.0%
!!	GGCTTTGAATCGGCTTCCAA+AGG	-	chr1_4:9477283-9477302	Msa0149000:three_prime_UTR	50.0%
	CGAGCATCAACAACCTCCTT+TGG	+	chr1_4:9477302-9477321	None:intergenic	50.0%
	CTTCCTGAGGATCTTCAGGT+TGG	-	chr1_4:9477371-9477390	Msa0149000:three_prime_UTR	50.0%
	AGACACGGACAGGTTTACGA+GGG	-	chr1_4:9477620-9477639	Msa0149000:intron	50.0%
	ACCATTCAGGAGCTACCTTC+AGG	-	chr1_4:9478453-9478472	Msa0149000:intron	50.0%
	TCCTGAAGGTAGCTCCTGAA+TGG	+	chr1_4:9478457-9478476	None:intergenic	50.0%
	TTGGGCCCTGCACATATAGA+TGG	-	chr1_4:9479143-9479162	Msa0149000:intron	50.0%
	TGGGCCCTGCACATATAGAT+GGG	-	chr1_4:9479144-9479163	Msa0149000:intron	50.0%
	ACTTGTGTGGGGCACATATG+TGG	+	chr1_4:9479198-9479217	None:intergenic	50.0%
	GCTATGTCTTTAGCAGGGCT+TGG	+	chr1_4:9479296-9479315	None:intergenic	50.0%
	GGTCATGGCAGTTGATTGTG+AGG	-	chr1_4:9479323-9479342	Msa0149000:intron	50.0%
	CTCAAGGGTTGTTCAACCTC+TGG	+	chr1_4:9479356-9479375	None:intergenic	50.0%
!	AACCCTTGAGCTGAGTACTG+TGG	-	chr1_4:9479366-9479385	Msa0149000:intron	50.0%
	CTCCACAGTACTCAGCTCAA+GGG	+	chr1_4:9479371-9479390	None:intergenic	50.0%
	TCTCCACAGTACTCAGCTCA+AGG	+	chr1_4:9479372-9479391	None:intergenic	50.0%
	TACTGTGGAGACCCGATGTT+GGG	-	chr1_4:9479381-9479400	Msa0149000:intron	50.0%
	TGGTATCATGCCCCAACATC+GGG	+	chr1_4:9479395-9479414	None:intergenic	50.0%
	CTGGTATCATGCCCCAACAT+CGG	+	chr1_4:9479396-9479415	None:intergenic	50.0%
	GGGCATGATACCAGCTGATA+TGG	-	chr1_4:9479402-9479421	Msa0149000:intron	50.0%
	GCGTTAGAGTCCATATCAGC+TGG	+	chr1_4:9479415-9479434	None:intergenic	50.0%
	CAACTGGGAGTGGTTCTCTA+TGG	+	chr1_4:9479656-9479675	None:intergenic	50.0%
	TTGTGAAGGGATTCCCGTCA+TGG	-	chr1_4:9479794-9479813	Msa0149000:intron	50.0%
	TGCCGTATAACCAATGGCAC+GGG	+	chr1_4:9479820-9479839	None:intergenic	50.0%
	CTGCCGTATAACCAATGGCA+CGG	+	chr1_4:9479821-9479840	None:intergenic	50.0%
	ACTGGACACTGACAGCATCA+TGG	-	chr1_4:9479867-9479886	Msa0149000:intron	50.0%
!	CCCACAACTTTCAGGTGAAG+AGG	-	chr1_4:9480517-9480536	Msa0149000:intron	50.0%
	CCCTCTTCACCTGAAAGTTG+TGG	+	chr1_4:9480521-9480540	None:intergenic	50.0%
	GGAAGGGTTCGTTGATACAG+GGG	+	chr1_4:9480576-9480595	None:intergenic	50.0%
!	GGTGCTGTAAACTTCCCTCT+TGG	-	chr1_4:9480738-9480757	Msa0149000:intron	50.0%
	ACATGGGCTCGACACAGACA+CGG	-	chr1_4:9477605-9477624	Msa0149000:CDS	55.0%
	CAGACACGGACAGGTTTACG+AGG	-	chr1_4:9477619-9477638	Msa0149000:intron	55.0%
	CACGTGTGTCAGTGTCGTGT+CGG	-	chr1_4:9477669-9477688	Msa0149000:intron	55.0%
	GTACTGTGGAGACCCGATGT+TGG	-	chr1_4:9479380-9479399	Msa0149000:intron	55.0%
	ACTGTGGAGACCCGATGTTG+GGG	-	chr1_4:9479382-9479401	Msa0149000:intron	55.0%
	CACACATAGATGGCAGGGGA+TGG	+	chr1_4:9479588-9479607	None:intergenic	55.0%
	GGTGGTCATGGTAGCCACTA+TGG	-	chr1_4:9479729-9479748	Msa0149000:intron	55.0%
!	GGCCCGTGCCATTGGTTATA+CGG	-	chr1_4:9479815-9479834	Msa0149000:intron	55.0%
!	CGTGCCATTGGTTATACGGC+AGG	-	chr1_4:9479819-9479838	Msa0149000:intron	55.0%
	TCAGTGTCCAGTGCTGTCGT+TGG	+	chr1_4:9479859-9479878	None:intergenic	55.0%
	ACGAGCAGAGCGTGAAGCAT+TGG	-	chr1_4:9480542-9480561	Msa0149000:intron	55.0%
!	CGAGCAGAGCGTGAAGCATT+GGG	-	chr1_4:9480543-9480562	Msa0149000:intron	55.0%
!	GTGTCAGTGTCGTGTCGGTG+TGG	-	chr1_4:9477674-9477693	Msa0149000:intron	60.0%
	ACCAATGGCACGGGCCATGA+CGG	+	chr1_4:9479811-9479830	None:intergenic	60.0%
	CCAGTGCTGTCGTTGGCAGA+AGG	+	chr1_4:9479852-9479871	None:intergenic	60.0%
	CCTTCTGCCAACGACAGCAC+TGG	-	chr1_4:9479849-9479868	Msa0149000:intron	60.0%
!!	GCAGAGCGTGAAGCATTGGG+AGG	-	chr1_4:9480546-9480565	Msa0149000:intron	60.0%
	GGCTCGACACAGACACGGAC+AGG	-	chr1_4:9477610-9477629	Msa0149000:intron	65.0%
!	TGTCGTGTCGGTGTGGACGC+TGG	-	chr1_4:9477681-9477700	Msa0149000:intron	65.0%
	CCAATGGCACGGGCCATGAC+GGG	+	chr1_4:9479810-9479829	None:intergenic	65.0%
	CCCGTCATGGCCCGTGCCAT+TGG	-	chr1_4:9479807-9479826	Msa0149000:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	9476900	9481256	9476900	ID=Msa0149000;Name=Msa0149000
chr1_4	mRNA	9476900	9481256	9476900	ID=Msa0149000-mRNA-1;Parent=Msa0149000;Name=Msa0149000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150\|1\|1\|1\|0.66\|1\|4\|657\|122
chr1_4	exon	9476900	9477625	9476900	ID=Msa0149000-mRNA-1:exon:3994;Parent=Msa0149000-mRNA-1
chr1_4	exon	9479667	9479714	9479667	ID=Msa0149000-mRNA-1:exon:3993;Parent=Msa0149000-mRNA-1
chr1_4	exon	9480768	9480925	9480768	ID=Msa0149000-mRNA-1:exon:3992;Parent=Msa0149000-mRNA-1
chr1_4	exon	9481013	9481256	9481013	ID=Msa0149000-mRNA-1:exon:3991;Parent=Msa0149000-mRNA-1
chr1_4	five_prime_UTR	9481107	9481256	9481107	ID=Msa0149000-mRNA-1:five_prime_utr;Parent=Msa0149000-mRNA-1
chr1_4	CDS	9481013	9481106	9481013	ID=Msa0149000-mRNA-1:cds;Parent=Msa0149000-mRNA-1
chr1_4	CDS	9480768	9480925	9480768	ID=Msa0149000-mRNA-1:cds;Parent=Msa0149000-mRNA-1
chr1_4	CDS	9479667	9479714	9479667	ID=Msa0149000-mRNA-1:cds;Parent=Msa0149000-mRNA-1
chr1_4	CDS	9477557	9477625	9477557	ID=Msa0149000-mRNA-1:cds;Parent=Msa0149000-mRNA-1
chr1_4	three_prime_UTR	9476900	9477556	9476900	ID=Msa0149000-mRNA-1:three_prime_utr;Parent=Msa0149000-mRNA-1

Gene Sequence	>Msa0149000 ATGGCGTCTTTGCTACAAGCGATTGTAGATCCAAAGAAAAACTGGTTCGCTGCTCAACACATGAAAGCTGTTTCCAAACGTCTTCGCAAATACGGGTTACGATATGATGATCTGTATGATCCGTATTACGATTTGGATATTAAGGAGGCTTTGAATCGGCTTCCAAAGGAGGTTGTTGATGCTCGTCATGCTCGTCTTAAGCGTGCTATTGATCTTTCCATGAAGCATGAGTATCTTCCTGAGGATCTTCAGGCAATGCAAACACCATTCAGGAGCTACCTTCAGGATATGCTGACTTTTGTGAAGAGGGAACGAGCAGAGCGTGAAGCATTGGGAGGTTTGCCCCTGTATCAACGAACCCTTCCATAA
Protein sequence	>Msa0149000 MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKRERAEREALGGLPLYQRTLP*