Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282240 | XP_003627848.2 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 2.30e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282240 | sp|Q3SZE2|PFD1_BOVIN | 37.838 | 111 | 69 | 0 | 3 | 113 | 6 | 116 | 1.23e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282240 | B7FMP0 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 1.10e-85 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1282240 | 0.866487 | 2.751867e-65 | -8.615850e-47 |
| Msa0007850 | Msa1282240 | 0.806384 | 8.445628e-50 | -8.615850e-47 |
| Msa0010490 | Msa1282240 | 0.803780 | 2.960582e-49 | -8.615850e-47 |
| Msa0010500 | Msa1282240 | 0.817739 | 2.821234e-52 | -8.615850e-47 |
| Msa0015140 | Msa1282240 | 0.804487 | 2.110006e-49 | -8.615850e-47 |
| Msa0047820 | Msa1282240 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0052300 | Msa1282240 | -0.815418 | 9.340855e-52 | -8.615850e-47 |
| Msa0052350 | Msa1282240 | -0.824541 | 7.632227e-54 | -8.615850e-47 |
| Msa0055150 | Msa1282240 | 0.877714 | 5.033858e-69 | -8.615850e-47 |
| Msa0057140 | Msa1282240 | 0.818141 | 2.288714e-52 | -8.615850e-47 |
| Msa0097360 | Msa1282240 | -0.825702 | 4.057542e-54 | -8.615850e-47 |
| Msa0097600 | Msa1282240 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0100800 | Msa1282240 | 0.811054 | 8.482018e-51 | -8.615850e-47 |
| Msa0603670 | Msa1282240 | 0.832577 | 8.731355e-56 | -8.615850e-47 |
| Msa0612390 | Msa1282240 | 0.830856 | 2.319844e-55 | -8.615850e-47 |
| Msa0620620 | Msa1282240 | 0.800318 | 1.524527e-48 | -8.615850e-47 |
| Msa0641140 | Msa1282240 | 0.815168 | 1.061688e-51 | -8.615850e-47 |
| Msa0647930 | Msa1282240 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0652300 | Msa1282240 | 0.822006 | 2.983705e-53 | -8.615850e-47 |
| Msa0691900 | Msa1282240 | 0.830743 | 2.473108e-55 | -8.615850e-47 |
| Msa0694840 | Msa1282240 | 0.849625 | 2.868376e-60 | -8.615850e-47 |
| Msa0704660 | Msa1282240 | 0.807899 | 4.034701e-50 | -8.615850e-47 |
| Msa0745200 | Msa1282240 | 0.811961 | 5.388696e-51 | -8.615850e-47 |
| Msa0806920 | Msa1282240 | 0.828506 | 8.656346e-55 | -8.615850e-47 |
| Msa0819060 | Msa1282240 | 0.826314 | 2.903285e-54 | -8.615850e-47 |
| Msa0827280 | Msa1282240 | 0.827919 | 1.198929e-54 | -8.615850e-47 |
| Msa0121820 | Msa1282240 | 0.837575 | 4.792984e-57 | -8.615850e-47 |
| Msa0131450 | Msa1282240 | 0.839266 | 1.756534e-57 | -8.615850e-47 |
| Msa0149000 | Msa1282240 | 0.815221 | 1.032922e-51 | -8.615850e-47 |
| Msa0165950 | Msa1282240 | 0.810258 | 1.260472e-50 | -8.615850e-47 |
| Msa0166750 | Msa1282240 | 0.844279 | 8.339222e-59 | -8.615850e-47 |
| Msa0177210 | Msa1282240 | 0.806862 | 6.692667e-50 | -8.615850e-47 |
| Msa0177270 | Msa1282240 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
| Msa0185350 | Msa1282240 | 0.820258 | 7.543425e-53 | -8.615850e-47 |
| Msa0188730 | Msa1282240 | -0.807181 | 5.730280e-50 | -8.615850e-47 |
| Msa0199690 | Msa1282240 | 0.802257 | 6.111938e-49 | -8.615850e-47 |
| Msa0208810 | Msa1282240 | 0.826696 | 2.354158e-54 | -8.615850e-47 |
| Msa0211840 | Msa1282240 | 0.817163 | 3.801841e-52 | -8.615850e-47 |
| Msa0211860 | Msa1282240 | 0.803362 | 3.614234e-49 | -8.615850e-47 |
| Msa0214710 | Msa1282240 | 0.820039 | 8.467045e-53 | -8.615850e-47 |
| Msa0220390 | Msa1282240 | 0.809151 | 2.180551e-50 | -8.615850e-47 |
| Msa0227400 | Msa1282240 | 0.807981 | 3.874727e-50 | -8.615850e-47 |
| Msa1227690 | Msa1282240 | 0.807920 | 3.992613e-50 | -8.615850e-47 |
| Msa1234980 | Msa1282240 | 0.826103 | 3.259520e-54 | -8.615850e-47 |
| Msa1269300 | Msa1282240 | 0.831092 | 2.030782e-55 | -8.615850e-47 |
| Msa1270620 | Msa1282240 | 0.808495 | 3.012222e-50 | -8.615850e-47 |
| Msa1270690 | Msa1282240 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa1277710 | Msa1282240 | 0.800389 | 1.474940e-48 | -8.615850e-47 |
| Msa1282240 | Msa1294840 | 0.800404 | 1.464521e-48 | -8.615850e-47 |
| Msa1282240 | Msa1310690 | 0.813459 | 2.532108e-51 | -8.615850e-47 |
| Msa1282240 | Msa1321360 | 0.837612 | 4.690707e-57 | -8.615850e-47 |
| Msa1282240 | Msa1329540 | 0.805739 | 1.154290e-49 | -8.615850e-47 |
| Msa1282240 | Msa1355700 | 0.817575 | 3.070820e-52 | -8.615850e-47 |
| Msa1282240 | Msa1364210 | 0.801333 | 9.459870e-49 | -8.615850e-47 |
| Msa1282240 | Msa1365860 | 0.831968 | 1.235281e-55 | -8.615850e-47 |
| Msa1282240 | Msa1371090 | 0.801566 | 8.475120e-49 | -8.615850e-47 |
| Msa1282240 | Msa1410130 | -0.811302 | 7.493944e-51 | -8.615850e-47 |
| Msa1282240 | Msa1418960 | -0.825857 | 3.728244e-54 | -8.615850e-47 |
| Msa1282240 | Msa1442850 | 0.822543 | 2.239648e-53 | -8.615850e-47 |
| Msa1282240 | Msa1450550 | -0.823786 | 1.148492e-53 | -8.615850e-47 |
| Msa0384880 | Msa1282240 | 0.825068 | 5.734628e-54 | -8.615850e-47 |
| Msa0408240 | Msa1282240 | -0.802411 | 5.681453e-49 | -8.615850e-47 |
| Msa0419520 | Msa1282240 | 0.825342 | 4.938489e-54 | -8.615850e-47 |
| Msa0465550 | Msa1282240 | 0.807070 | 6.048416e-50 | -8.615850e-47 |
| Msa0994290 | Msa1282240 | 0.839982 | 1.143459e-57 | -8.615850e-47 |
| Msa1025260 | Msa1282240 | 0.855641 | 5.504704e-62 | -8.615850e-47 |
| Msa1025940 | Msa1282240 | 0.820771 | 5.752895e-53 | -8.615850e-47 |
| Msa1029970 | Msa1282240 | 0.804287 | 2.322801e-49 | -8.615850e-47 |
| Msa1040800 | Msa1282240 | 0.834146 | 3.548065e-56 | -8.615850e-47 |
| Msa1041520 | Msa1282240 | 0.848059 | 7.802225e-60 | -8.615850e-47 |
| Msa1048760 | Msa1282240 | -0.812811 | 3.513943e-51 | -8.615850e-47 |
| Msa1081560 | Msa1282240 | 0.856750 | 2.605241e-62 | -8.615850e-47 |
| Msa1083750 | Msa1282240 | 0.825244 | 5.209934e-54 | -8.615850e-47 |
| Msa1089320 | Msa1282240 | 0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa1089840 | Msa1282240 | 0.835514 | 1.605686e-56 | -8.615850e-47 |
| Msa1093330 | Msa1282240 | 0.808298 | 3.316839e-50 | -8.615850e-47 |
| Msa1100530 | Msa1282240 | -0.810641 | 1.042126e-50 | -8.615850e-47 |
| Msa1103660 | Msa1282240 | -0.809743 | 1.627473e-50 | -8.615850e-47 |
| Msa0239490 | Msa1282240 | 0.801097 | 1.057503e-48 | -8.615850e-47 |
| Msa0270170 | Msa1282240 | -0.801355 | 9.364853e-49 | -8.615850e-47 |
| Msa0280430 | Msa1282240 | 0.815483 | 9.032640e-52 | -8.615850e-47 |
| Msa0289280 | Msa1282240 | -0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa0291520 | Msa1282240 | 0.828808 | 7.315944e-55 | -8.615850e-47 |
| Msa0304590 | Msa1282240 | 0.811235 | 7.748068e-51 | -8.615850e-47 |
| Msa0304660 | Msa1282240 | 0.820515 | 6.586285e-53 | -8.615850e-47 |
| Msa0331700 | Msa1282240 | 0.819865 | 9.279232e-53 | -8.615850e-47 |
| Msa1109350 | Msa1282240 | 0.847438 | 1.156260e-59 | -8.615850e-47 |
| Msa1125500 | Msa1282240 | 0.839911 | 1.193349e-57 | -8.615850e-47 |
| Msa1125580 | Msa1282240 | 0.800170 | 1.634468e-48 | -8.615850e-47 |
| Msa1127130 | Msa1282240 | 0.834518 | 2.862221e-56 | -8.615850e-47 |
| Msa1127190 | Msa1282240 | 0.811860 | 5.667985e-51 | -8.615850e-47 |
| Msa1127830 | Msa1282240 | 0.807736 | 4.368678e-50 | -8.615850e-47 |
| Msa1128660 | Msa1282240 | 0.823898 | 1.081075e-53 | -8.615850e-47 |
| Msa1135800 | Msa1282240 | -0.822651 | 2.113742e-53 | -8.615850e-47 |
| Msa1166410 | Msa1282240 | 0.856170 | 3.855829e-62 | -8.615850e-47 |
| Msa1166870 | Msa1282240 | 0.809201 | 2.127267e-50 | -8.615850e-47 |
| Msa1179950 | Msa1282240 | 0.803328 | 3.674026e-49 | -8.615850e-47 |
| Msa1179980 | Msa1282240 | 0.812289 | 4.569595e-51 | -8.615850e-47 |
| Msa1184370 | Msa1282240 | 0.801313 | 9.551866e-49 | -8.615850e-47 |
| Msa1186560 | Msa1282240 | 0.817811 | 2.717401e-52 | -8.615850e-47 |
| Msa1203900 | Msa1282240 | 0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa1207730 | Msa1282240 | 0.803686 | 3.097320e-49 | -8.615850e-47 |
| Msa0556790 | Msa1282240 | 0.851670 | 7.629532e-61 | -8.615850e-47 |
| Msa0600600 | Msa1282240 | 0.818243 | 2.169993e-52 | -8.615850e-47 |
| Msa0925770 | Msa1282240 | 0.810632 | 1.046576e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282240 | MtrunA17_Chr8g0353091 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 2.12e-89 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282240 | AT2G07340.1 | 67.969 | 128 | 41 | 0 | 1 | 128 | 1 | 128 | 2.96e-61 | 184 |
| Msa1282240 | AT2G07340.2 | 67.969 | 128 | 40 | 1 | 1 | 128 | 1 | 127 | 4.90e-59 | 178 |
Find 43 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTCTTTGGAACGTATC+TGG | 0.128232 | 8_3:-22494864 | None:intergenic |
| CTCTCGAATGTTGTCTTTAT+AGG | 0.183275 | 8_3:+22495741 | Msa1282240:three_prime_UTR |
| TTAATTCTCTCAGTCACATT+AGG | 0.242777 | 8_3:+22493365 | Msa1282240:five_prime_UTR |
| CAAGAATGAAATAGATGTTT+TGG | 0.266357 | 8_3:-22495952 | None:intergenic |
| ACGCTTCTTGTCTGTTTCTT+TGG | 0.277466 | 8_3:-22494875 | None:intergenic |
| TTGAACGAATAGAAACCTTT+AGG | 0.330258 | 8_3:+22495656 | Msa1282240:three_prime_UTR |
| TCTCGAATGTTGTCTTTATA+GGG | 0.338046 | 8_3:+22495742 | Msa1282240:three_prime_UTR |
| CTGCCTGCTACGTCTGTTCA+TGG | 0.357342 | 8_3:+22495704 | Msa1282240:three_prime_UTR |
| TAATTCTCTCAGTCACATTA+GGG | 0.361539 | 8_3:+22493366 | Msa1282240:five_prime_UTR |
| AATTGTGGCCAGGTTTGTAT+TGG | 0.395225 | 8_3:+22495195 | Msa1282240:intron |
| CACAATTTCACAAATCCTAA+AGG | 0.395598 | 8_3:-22495671 | None:intergenic |
| CTGCCAGTAAAATTCAATAA+TGG | 0.397167 | 8_3:-22495624 | None:intergenic |
| TGTTTCTTTGGAACGTATCT+GGG | 0.410800 | 8_3:-22494863 | None:intergenic |
| CATAATTTGACGAGCAAGAC+CGG | 0.429125 | 8_3:-22495576 | None:intergenic |
| AATAAACCACTTGTAAATCT+TGG | 0.432392 | 8_3:+22496055 | Msa1282240:three_prime_UTR |
| ACTAATGTCTACAAATCAAT+TGG | 0.444669 | 8_3:+22494940 | Msa1282240:CDS |
| TAGGCTTTCGTTGAAATTCA+AGG | 0.455683 | 8_3:+22493590 | Msa1282240:intron |
| TTGTAGACATTAGTATCATC+AGG | 0.470322 | 8_3:-22494931 | None:intergenic |
| GACAATGGAGGAGTTGAAGC+AGG | 0.480736 | 8_3:+22494906 | Msa1282240:CDS |
| ACAGAGCTCAAAAGAATACT+TGG | 0.492644 | 8_3:+22495499 | Msa1282240:intron |
| CTCCGTTCAATTGATTGAGA+TGG | 0.498338 | 8_3:+22493426 | Msa1282240:exon |
| CAATATGAAAATAGCGTGCA+TGG | 0.511311 | 8_3:+22495980 | Msa1282240:three_prime_UTR |
| CTGCTACGTCTGTTCATGGT+TGG | 0.517274 | 8_3:+22495708 | Msa1282240:three_prime_UTR |
| GTCTCTTATCTGACTTGAGA+AGG | 0.519451 | 8_3:+22495828 | Msa1282240:three_prime_UTR |
| GGCAACGTTAATGAACGAAC+AGG | 0.526861 | 8_3:+22495225 | Msa1282240:CDS |
| AACTACAAGGAAATTGAAGC+AGG | 0.542190 | 8_3:+22493625 | Msa1282240:CDS |
| CGAACAGGAGAACAAGTTCA+AGG | 0.550157 | 8_3:+22495240 | Msa1282240:CDS |
| CAACCATGAACAGACGTAGC+AGG | 0.557479 | 8_3:-22495707 | None:intergenic |
| TGCCATCTCAATCAATTGAA+CGG | 0.568907 | 8_3:-22493428 | None:intergenic |
| TTAGGATTTGTGAAATTGTG+AGG | 0.570039 | 8_3:+22495674 | Msa1282240:three_prime_UTR |
| TTGCTGAGTAAATTGCAAAA+CGG | 0.571419 | 8_3:+22493304 | Msa1282240:five_prime_UTR |
| GGAGAAGCAGATTGCAGAGG+TGG | 0.574472 | 8_3:+22495520 | Msa1282240:CDS |
| TGAACGGAGAATTCTTCGAT+CGG | 0.587944 | 8_3:-22493412 | None:intergenic |
| GGCAGACGAATCGATCAAAA+CGG | 0.605188 | 8_3:+22493447 | Msa1282240:CDS |
| GAACTACCAAGATTTACAAG+TGG | 0.612603 | 8_3:-22496061 | None:intergenic |
| GTCGTATGATAGAAACTACA+AGG | 0.618512 | 8_3:+22493612 | Msa1282240:CDS |
| ATAATTTGACGAGCAAGACC+GGG | 0.620149 | 8_3:-22495575 | None:intergenic |
| GAGCTGTTACAACAAGATCC+CGG | 0.623013 | 8_3:+22495557 | Msa1282240:CDS |
| CAGGTTTGTATTGGAGACGA+AGG | 0.626778 | 8_3:+22495204 | Msa1282240:intron |
| TATAAAGACAACATTCGAGA+GGG | 0.646291 | 8_3:-22495739 | None:intergenic |
| AAGGACATTTACTTGTAATG+CGG | 0.654969 | 8_3:-22495281 | None:intergenic |
| CTATAAAGACAACATTCGAG+AGG | 0.693362 | 8_3:-22495740 | None:intergenic |
| CTTGGAGAAGCAGATTGCAG+AGG | 0.694862 | 8_3:+22495517 | Msa1282240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTAATCAGTTTATTT+TGG | + | chr8_3:22495053-22495072 | Msa1282240:intron | 10.0% |
| !! | AATAAATAGAGCAATAAAAA+GGG | - | chr8_3:22493533-22493552 | None:intergenic | 15.0% |
| !! | AAATAAATAGAGCAATAAAA+AGG | - | chr8_3:22493534-22493553 | None:intergenic | 15.0% |
| !! | TTAATTGAATTTAGATGATT+AGG | + | chr8_3:22493859-22493878 | Msa1282240:intron | 15.0% |
| !!! | TAATATTTTGAGAAAATGAA+AGG | + | chr8_3:22493980-22493999 | Msa1282240:intron | 15.0% |
| !!! | AATATTTTGAGAAAATGAAA+GGG | + | chr8_3:22493981-22494000 | Msa1282240:intron | 15.0% |
| !!! | AATTTGAGTTTTTTTTATCA+AGG | + | chr8_3:22494141-22494160 | Msa1282240:intron | 15.0% |
| !! | GAAAAAAAATGTATAAAAGT+AGG | + | chr8_3:22494257-22494276 | Msa1282240:intron | 15.0% |
| !! | AGTTATATAAAAACCAATAA+AGG | + | chr8_3:22494740-22494759 | Msa1282240:intron | 15.0% |
| !!! | TATATTTCTGAAGAAAAATA+GGG | - | chr8_3:22495037-22495056 | None:intergenic | 15.0% |
| !!! | TTATATTTCTGAAGAAAAAT+AGG | - | chr8_3:22495038-22495057 | None:intergenic | 15.0% |
| !! | TTGAAATTGTAGAAGAAAAA+GGG | - | chr8_3:22493486-22493505 | None:intergenic | 20.0% |
| !! | ATTGAAATTGTAGAAGAAAA+AGG | - | chr8_3:22493487-22493506 | None:intergenic | 20.0% |
| !! | ATAAATAGAGCAATAAAAAG+GGG | - | chr8_3:22493532-22493551 | None:intergenic | 20.0% |
| !!! | GTTGTTATCTTTATTTGTTA+AGG | + | chr8_3:22493680-22493699 | Msa1282240:intron | 20.0% |
| !!! | TCATTTTCTCAAAATATTAC+TGG | - | chr8_3:22493979-22493998 | None:intergenic | 20.0% |
| !! | AAACACTCATAATTTATGAA+AGG | - | chr8_3:22494408-22494427 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGCATGTTTAAAT+AGG | - | chr8_3:22495109-22495128 | None:intergenic | 20.0% |
| !! | TCTAATACAATCTTAAATTG+TGG | + | chr8_3:22495180-22495199 | Msa1282240:intron | 20.0% |
| !!! | TATCCATTATTGAATTTTAC+TGG | + | chr8_3:22495621-22495640 | Msa1282240:three_prime_UTR | 20.0% |
| ! | TGAAATTGTAGAAGAAAAAG+GGG | - | chr8_3:22493485-22493504 | None:intergenic | 25.0% |
| ! | TGTTTGATGCATAAAAATGT+AGG | + | chr8_3:22493571-22493590 | Msa1282240:intron | 25.0% |
| !!! | TGAATAAGTGAACTTTGTTT+TGG | + | chr8_3:22493748-22493767 | Msa1282240:intron | 25.0% |
| !!! | GAATAAGTGAACTTTGTTTT+GGG | + | chr8_3:22493749-22493768 | Msa1282240:intron | 25.0% |
| !!! | AATAAGTGAACTTTGTTTTG+GGG | + | chr8_3:22493750-22493769 | Msa1282240:intron | 25.0% |
| !!! | TTTGTTTTGGGGATTATTTT+GGG | + | chr8_3:22493761-22493780 | Msa1282240:intron | 25.0% |
| ! | TGATAGTAATTAGACTAAGT+TGG | + | chr8_3:22493808-22493827 | Msa1282240:intron | 25.0% |
| ! | TTCTACATGGTAAAAAGTAA+AGG | + | chr8_3:22494091-22494110 | Msa1282240:intron | 25.0% |
| !!! | TTTTTTATCAAGGTTGAGTT+TGG | + | chr8_3:22494151-22494170 | Msa1282240:intron | 25.0% |
| !! | TTTTTATCAAGGTTGAGTTT+GGG | + | chr8_3:22494152-22494171 | Msa1282240:intron | 25.0% |
| !! | ATATTCTTGCTGATTATACA+TGG | + | chr8_3:22494296-22494315 | Msa1282240:intron | 25.0% |
| !! | TATTCTTGCTGATTATACAT+GGG | + | chr8_3:22494297-22494316 | Msa1282240:intron | 25.0% |
| !! | TAAATTATGAGTGTTTTTCC+TGG | + | chr8_3:22494412-22494431 | Msa1282240:intron | 25.0% |
| ! | AATATCAAGGTTTCCTTTAT+TGG | - | chr8_3:22494756-22494775 | None:intergenic | 25.0% |
| ! | CAAGAAGTTATATCCTTATT+AGG | + | chr8_3:22494788-22494807 | Msa1282240:intron | 25.0% |
| ! | ACTAATGTCTACAAATCAAT+TGG | + | chr8_3:22494940-22494959 | Msa1282240:CDS | 25.0% |
| ! | TGGTATGTAAAAGATATCTT+AGG | + | chr8_3:22494960-22494979 | Msa1282240:intron | 25.0% |
| !!! | AGTTTATTTTGGTTTTTGCA+GGG | + | chr8_3:22495064-22495083 | Msa1282240:intron | 25.0% |
| ! | ATCTGAGTGAACAAATAATA+TGG | + | chr8_3:22495470-22495489 | Msa1282240:intron | 25.0% |
| !! | CAAGAATGAAATAGATGTTT+TGG | - | chr8_3:22495955-22495974 | None:intergenic | 25.0% |
| TTGCTGAGTAAATTGCAAAA+CGG | + | chr8_3:22493304-22493323 | Msa1282240:five_prime_UTR | 30.0% | |
| TTAATTCTCTCAGTCACATT+AGG | + | chr8_3:22493365-22493384 | Msa1282240:five_prime_UTR | 30.0% | |
| TAATTCTCTCAGTCACATTA+GGG | + | chr8_3:22493366-22493385 | Msa1282240:five_prime_UTR | 30.0% | |
| !!! | CTTTGTTTTGGGGATTATTT+TGG | + | chr8_3:22493760-22493779 | Msa1282240:intron | 30.0% |
| !!! | GGTACCTTTTGTTTTTATGA+GGG | + | chr8_3:22493782-22493801 | Msa1282240:intron | 30.0% |
| ACTACCCTCATAAAAACAAA+AGG | - | chr8_3:22493789-22493808 | None:intergenic | 30.0% | |
| ! | GTGTATGTTTTGTAATGCAT+TGG | + | chr8_3:22493924-22493943 | Msa1282240:intron | 30.0% |
| !! | AGTAAAGGTTAAAGTACTGA+AGG | + | chr8_3:22494106-22494125 | Msa1282240:intron | 30.0% |
| !! | GTAAAGGTTAAAGTACTGAA+GGG | + | chr8_3:22494107-22494126 | Msa1282240:intron | 30.0% |
| GCTCTTTATGAAAACTACTT+GGG | - | chr8_3:22494202-22494221 | None:intergenic | 30.0% | |
| TGCTCTTTATGAAAACTACT+TGG | - | chr8_3:22494203-22494222 | None:intergenic | 30.0% | |
| TGTGTTACATGATACTACAT+TGG | + | chr8_3:22494336-22494355 | Msa1282240:intron | 30.0% | |
| GTGTTTATGCAAAAATAACC+AGG | - | chr8_3:22494433-22494452 | None:intergenic | 30.0% | |
| AGTATAAGCACAGTACATAT+AGG | - | chr8_3:22494549-22494568 | None:intergenic | 30.0% | |
| ATACTAGAATTATGCTCTTC+TGG | + | chr8_3:22494564-22494583 | Msa1282240:intron | 30.0% | |
| ! | TAAGTTCTGATTTCTGAAAG+AGG | + | chr8_3:22494692-22494711 | Msa1282240:intron | 30.0% |
| GATGCAACATACAAATATCA+AGG | - | chr8_3:22494769-22494788 | None:intergenic | 30.0% | |
| TTGTAGACATTAGTATCATC+AGG | - | chr8_3:22494934-22494953 | None:intergenic | 30.0% | |
| !!! | CAGTTTATTTTGGTTTTTGC+AGG | + | chr8_3:22495063-22495082 | Msa1282240:intron | 30.0% |
| AGAACAAAAGCTTCATTGTT+GGG | + | chr8_3:22495131-22495150 | Msa1282240:intron | 30.0% | |
| AAGGACATTTACTTGTAATG+CGG | - | chr8_3:22495284-22495303 | None:intergenic | 30.0% | |
| AGAAGTTTCCATAAAAGTGA+AGG | - | chr8_3:22495307-22495326 | None:intergenic | 30.0% | |
| GTGAACAAATAATATGGCTT+TGG | + | chr8_3:22495476-22495495 | Msa1282240:intron | 30.0% | |
| CTGCCAGTAAAATTCAATAA+TGG | - | chr8_3:22495627-22495646 | None:intergenic | 30.0% | |
| ! | TTATTGAATTTTACTGGCAG+TGG | + | chr8_3:22495627-22495646 | Msa1282240:three_prime_UTR | 30.0% |
| TTGAACGAATAGAAACCTTT+AGG | + | chr8_3:22495656-22495675 | Msa1282240:three_prime_UTR | 30.0% | |
| CACAATTTCACAAATCCTAA+AGG | - | chr8_3:22495674-22495693 | None:intergenic | 30.0% | |
| TTAGGATTTGTGAAATTGTG+AGG | + | chr8_3:22495674-22495693 | Msa1282240:three_prime_UTR | 30.0% | |
| TATAAAGACAACATTCGAGA+GGG | - | chr8_3:22495742-22495761 | None:intergenic | 30.0% | |
| TCTCGAATGTTGTCTTTATA+GGG | + | chr8_3:22495742-22495761 | Msa1282240:three_prime_UTR | 30.0% | |
| TGCCATCTCAATCAATTGAA+CGG | - | chr8_3:22493431-22493450 | None:intergenic | 35.0% | |
| TAGGCTTTCGTTGAAATTCA+AGG | + | chr8_3:22493590-22493609 | Msa1282240:intron | 35.0% | |
| GTCGTATGATAGAAACTACA+AGG | + | chr8_3:22493612-22493631 | Msa1282240:CDS | 35.0% | |
| AACTACAAGGAAATTGAAGC+AGG | + | chr8_3:22493625-22493644 | Msa1282240:CDS | 35.0% | |
| !!! | GGGTACCTTTTGTTTTTATG+AGG | + | chr8_3:22493781-22493800 | Msa1282240:intron | 35.0% |
| AACCAACACTTCAGATTGAA+GGG | - | chr8_3:22494073-22494092 | None:intergenic | 35.0% | |
| TATTACTACTTGTGTGTGCT+AGG | + | chr8_3:22494627-22494646 | Msa1282240:intron | 35.0% | |
| !! | TGTTTCTTTGGAACGTATCT+GGG | - | chr8_3:22494866-22494885 | None:intergenic | 35.0% |
| GAGAACAAAAGCTTCATTGT+TGG | + | chr8_3:22495130-22495149 | Msa1282240:intron | 35.0% | |
| TACAATCTTAAATTGTGGCC+AGG | + | chr8_3:22495185-22495204 | Msa1282240:intron | 35.0% | |
| !! | ATGTCCTTCCTTCACTTTTA+TGG | + | chr8_3:22495296-22495315 | Msa1282240:intron | 35.0% |
| GTTTCCATAAAAGTGAAGGA+AGG | - | chr8_3:22495303-22495322 | None:intergenic | 35.0% | |
| ACAGAGCTCAAAAGAATACT+TGG | + | chr8_3:22495499-22495518 | Msa1282240:intron | 35.0% | |
| CTATAAAGACAACATTCGAG+AGG | - | chr8_3:22495743-22495762 | None:intergenic | 35.0% | |
| CTCTCGAATGTTGTCTTTAT+AGG | + | chr8_3:22495741-22495760 | Msa1282240:three_prime_UTR | 35.0% | |
| CAATATGAAAATAGCGTGCA+TGG | + | chr8_3:22495980-22495999 | Msa1282240:three_prime_UTR | 35.0% | |
| TGAACGGAGAATTCTTCGAT+CGG | - | chr8_3:22493415-22493434 | None:intergenic | 40.0% | |
| CTCCGTTCAATTGATTGAGA+TGG | + | chr8_3:22493426-22493445 | Msa1282240:exon | 40.0% | |
| GTGTCTGACATCAACAAATG+TGG | - | chr8_3:22494026-22494045 | None:intergenic | 40.0% | |
| ATTGAAGGGTTGTCTAGTGT+CGG | - | chr8_3:22494059-22494078 | None:intergenic | 40.0% | |
| ! | AACCCTTCAATCTGAAGTGT+TGG | + | chr8_3:22494068-22494087 | Msa1282240:intron | 40.0% |
| GAACCAACACTTCAGATTGA+AGG | - | chr8_3:22494074-22494093 | None:intergenic | 40.0% | |
| !! | TCTGAAGTGTTGGTTCTACA+TGG | + | chr8_3:22494078-22494097 | Msa1282240:intron | 40.0% |
| !! | AAGGTTAAAGTACTGAAGGG+AGG | + | chr8_3:22494110-22494129 | Msa1282240:intron | 40.0% |
| ! | GTCTAAAGCAACGCCTAATA+AGG | - | chr8_3:22494804-22494823 | None:intergenic | 40.0% |
| TATATTATCCCCTTGCATGC+AGG | + | chr8_3:22494834-22494853 | Msa1282240:intron | 40.0% | |
| !! | CTGTTTCTTTGGAACGTATC+TGG | - | chr8_3:22494867-22494886 | None:intergenic | 40.0% |
| ! | ACGCTTCTTGTCTGTTTCTT+TGG | - | chr8_3:22494878-22494897 | None:intergenic | 40.0% |
| !!! | GAAGCGTGCTTTTTTGACAA+TGG | + | chr8_3:22494891-22494910 | Msa1282240:CDS | 40.0% |
| AATTGTGGCCAGGTTTGTAT+TGG | + | chr8_3:22495195-22495214 | Msa1282240:intron | 40.0% | |
| ATAATTTGACGAGCAAGACC+GGG | - | chr8_3:22495578-22495597 | None:intergenic | 40.0% | |
| CATAATTTGACGAGCAAGAC+CGG | - | chr8_3:22495579-22495598 | None:intergenic | 40.0% | |
| ! | TTGAATTTTACTGGCAGTGG+CGG | + | chr8_3:22495630-22495649 | Msa1282240:three_prime_UTR | 40.0% |
| ! | GTCTCTTATCTGACTTGAGA+AGG | + | chr8_3:22495828-22495847 | Msa1282240:three_prime_UTR | 40.0% |
| GGCAGACGAATCGATCAAAA+CGG | + | chr8_3:22493447-22493466 | Msa1282240:CDS | 45.0% | |
| TACTTGTGTGTGCTAGGATG+TGG | + | chr8_3:22494633-22494652 | Msa1282240:intron | 45.0% | |
| !!! | GCGTGCTTTTTTGACAATGG+AGG | + | chr8_3:22494894-22494913 | Msa1282240:CDS | 45.0% |
| CTTCGTCTCCAATACAAACC+TGG | - | chr8_3:22495206-22495225 | None:intergenic | 45.0% | |
| CAGGTTTGTATTGGAGACGA+AGG | + | chr8_3:22495204-22495223 | Msa1282240:intron | 45.0% | |
| GGCAACGTTAATGAACGAAC+AGG | + | chr8_3:22495225-22495244 | Msa1282240:CDS | 45.0% | |
| CGAACAGGAGAACAAGTTCA+AGG | + | chr8_3:22495240-22495259 | Msa1282240:CDS | 45.0% | |
| GAGCTGTTACAACAAGATCC+CGG | + | chr8_3:22495557-22495576 | Msa1282240:CDS | 45.0% | |
| ! | TGAATTTTACTGGCAGTGGC+GGG | + | chr8_3:22495631-22495650 | Msa1282240:three_prime_UTR | 45.0% |
| GCTGATTATACATGGGCGAG+TGG | + | chr8_3:22494304-22494323 | Msa1282240:intron | 50.0% | |
| GATTATACATGGGCGAGTGG+TGG | + | chr8_3:22494307-22494326 | Msa1282240:intron | 50.0% | |
| GACAATGGAGGAGTTGAAGC+AGG | + | chr8_3:22494906-22494925 | Msa1282240:CDS | 50.0% | |
| TGCAGGGAAAACGTAAGTCG+TGG | + | chr8_3:22495080-22495099 | Msa1282240:intron | 50.0% | |
| CTTGGAGAAGCAGATTGCAG+AGG | + | chr8_3:22495517-22495536 | Msa1282240:CDS | 50.0% | |
| CAACCATGAACAGACGTAGC+AGG | - | chr8_3:22495710-22495729 | None:intergenic | 50.0% | |
| CTGCTACGTCTGTTCATGGT+TGG | + | chr8_3:22495708-22495727 | Msa1282240:three_prime_UTR | 50.0% | |
| ! | GTCTAGTGTCGGACACGTGA+TGG | - | chr8_3:22494048-22494067 | None:intergenic | 55.0% |
| GGTTTGCACCTGCATGCAAG+GGG | - | chr8_3:22494845-22494864 | None:intergenic | 55.0% | |
| GGGTTTGCACCTGCATGCAA+GGG | - | chr8_3:22494846-22494865 | None:intergenic | 55.0% | |
| TGGGTTTGCACCTGCATGCA+AGG | - | chr8_3:22494847-22494866 | None:intergenic | 55.0% | |
| GGAGAAGCAGATTGCAGAGG+TGG | + | chr8_3:22495520-22495539 | Msa1282240:CDS | 55.0% | |
| CTGCCTGCTACGTCTGTTCA+TGG | + | chr8_3:22495704-22495723 | Msa1282240:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 22493280 | 22496077 | 22493280 | ID=Msa1282240;Name=Msa1282240 |
| chr8_3 | mRNA | 22493280 | 22496077 | 22493280 | ID=Msa1282240-mRNA-1;Parent=Msa1282240;Name=Msa1282240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=165|0.8|0.83|1|1|1|6|464|128 |
| chr8_3 | exon | 22493280 | 22493468 | 22493280 | ID=Msa1282240-mRNA-1:exon:8037;Parent=Msa1282240-mRNA-1 |
| chr8_3 | exon | 22493593 | 22493646 | 22493593 | ID=Msa1282240-mRNA-1:exon:8038;Parent=Msa1282240-mRNA-1 |
| chr8_3 | exon | 22494856 | 22494961 | 22494856 | ID=Msa1282240-mRNA-1:exon:8039;Parent=Msa1282240-mRNA-1 |
| chr8_3 | exon | 22495085 | 22495091 | 22495085 | ID=Msa1282240-mRNA-1:exon:8040;Parent=Msa1282240-mRNA-1 |
| chr8_3 | exon | 22495207 | 22495291 | 22495207 | ID=Msa1282240-mRNA-1:exon:8041;Parent=Msa1282240-mRNA-1 |
| chr8_3 | exon | 22495503 | 22496077 | 22495503 | ID=Msa1282240-mRNA-1:exon:8042;Parent=Msa1282240-mRNA-1 |
| chr8_3 | five_prime_UTR | 22493280 | 22493444 | 22493280 | ID=Msa1282240-mRNA-1:five_prime_utr;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22493445 | 22493468 | 22493445 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22493593 | 22493646 | 22493593 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22494856 | 22494961 | 22494856 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22495085 | 22495091 | 22495085 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22495207 | 22495291 | 22495207 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | CDS | 22495503 | 22495613 | 22495503 | ID=Msa1282240-mRNA-1:cds;Parent=Msa1282240-mRNA-1 |
| chr8_3 | three_prime_UTR | 22495614 | 22496077 | 22495614 | ID=Msa1282240-mRNA-1:three_prime_utr;Parent=Msa1282240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
