AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051880 MtrunA17_Chr7g0221511 81.250 112 2 1 1 93 1 112 3.58e-60 179
Msa1051880 MtrunA17_Chr6g0457261 81.250 112 2 1 1 93 1 112 6.69e-60 178
Msa1051880 MtrunA17_Chr5g0441211 75.000 112 9 1 1 93 1 112 9.27e-56 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051880 AT1G36240.1 71.429 112 13 1 1 93 1 112 3.48e-53 161
Msa1051880 AT1G77940.1 70.536 112 14 1 1 93 1 112 4.79e-53 161
Msa1051880 AT3G18740.1 70.536 112 14 1 1 93 1 112 2.92e-52 159

Find 37 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTACGATGCTTGTTATTT+TGG 0.148620 7_2:+19638147 Msa1051880:three_prime_UTR
GAACTAAATTGAATACTATT+GGG 0.280624 7_2:-19638324 None:intergenic
TGAACTAAATTGAATACTAT+TGG 0.286488 7_2:-19638325 None:intergenic
CTAACAACTGTCCTCCTTTG+AGG 0.365472 7_2:+19636791 Msa1051880:CDS
GACATCATCAAGACAGTTCC+TGG 0.394800 7_2:+19638028 Msa1051880:CDS
AAAATTCTAGTTGTAGACTA+TGG 0.397229 7_2:+19638118 Msa1051880:three_prime_UTR
TTTGCGGCCACCATTGTTGA+AGG 0.420354 7_2:-19629059 None:intergenic
TTACTCAATGCTCAATCAGC+TGG 0.426863 7_2:-19638175 None:intergenic
ACAACTTACTTCCATTGTAA+TGG 0.429111 7_2:-19636861 None:intergenic
GGCCACCATTGTTGAAGGTT+TGG 0.449324 7_2:-19629054 None:intergenic
CTCATGAGAGCATCAACAAC+AGG 0.462326 7_2:+19629196 Msa1051880:CDS
TGCCTCAGCATTGTTGATCC+TGG 0.466033 7_2:+19637911 Msa1051880:CDS
GAAGCTTACGGTCTTCTTTG+CGG 0.470686 7_2:-19629075 None:intergenic
CTTTACGTTTACTGATCTCC+AGG 0.475814 7_2:-19638046 None:intergenic
AAAGTGTAAACACTGCCTCT+AGG 0.491840 7_2:-19628992 None:intergenic
GTTGACCTTGGCACTGCTTG+TGG 0.506943 7_2:+19637869 Msa1051880:CDS
ACATAGAATTGAAAACATCA+TGG 0.511457 7_2:-19638075 None:intergenic
AACTAAATTGAATACTATTG+GGG 0.518431 7_2:-19638323 None:intergenic
TAGTATTCAATTTAGTTCAG+TGG 0.522114 7_2:+19638329 Msa1051880:three_prime_UTR
TATGCTATGTTGGCTAAGGT+TGG 0.529938 7_2:+19636832 Msa1051880:CDS
ATCATAGACAATGTTGACCT+TGG 0.543023 7_2:+19637857 Msa1051880:intron
TACTCAATGCTCAATCAGCT+GGG 0.550544 7_2:-19638174 None:intergenic
AATTGAGTACTATGCTATGT+TGG 0.552970 7_2:+19636822 Msa1051880:CDS
GTACTATGCTATGTTGGCTA+AGG 0.556485 7_2:+19636828 Msa1051880:CDS
CATAGAATTGAAAACATCAT+GGG 0.585069 7_2:-19638074 None:intergenic
ATTTCAGACTTCCTCAAAGG+AGG 0.587118 7_2:-19636802 None:intergenic
TCACACCAAACCTTCAACAA+TGG 0.594420 7_2:+19629049 Msa1051880:exon
TCAATTTCAGACTTCCTCAA+AGG 0.597003 7_2:-19636805 None:intergenic
AGGAACTGTCTTGATGATGT+CGG 0.599851 7_2:-19638026 None:intergenic
GTTGGAGTTCACCATTACAA+TGG 0.600433 7_2:+19636850 Msa1051880:CDS
TAGTTGTAGACTATGGTGTA+CGG 0.613110 7_2:+19638125 Msa1051880:three_prime_UTR
CACCAAACCTTCAACAATGG+TGG 0.615697 7_2:+19629052 Msa1051880:exon
CTATATAGAAATTAGAACAA+TGG 0.617277 7_2:-19638218 None:intergenic
ACTTTCCACAAGCAGTGCCA+AGG 0.620377 7_2:-19637874 None:intergenic
TATTCAATTTAGTTCAGTGG+AGG 0.626744 7_2:+19638332 Msa1051880:three_prime_UTR
TACCAGGATCAACAATGCTG+AGG 0.662178 7_2:-19637913 None:intergenic
GATGCGCAGAGAAGAAAATG+CGG 0.718290 7_2:-19629026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATATATGAAAAGAT+GGG - chr7_2:19629547-19629566 None:intergenic 10.0%
!! TTAAAATATATATGAAAAGA+TGG - chr7_2:19629548-19629567 None:intergenic 10.0%
!!! TTTAAGTTATGTTTTTTTAA+GGG + chr7_2:19631030-19631049 Msa1051880:intron 10.0%
!!! AATAATAATTGATTAGTTTT+TGG - chr7_2:19632732-19632751 None:intergenic 10.0%
!! TCAAATTTATATAAAAACTA+GGG - chr7_2:19634078-19634097 None:intergenic 10.0%
!! ATCAAATTTATATAAAAACT+AGG - chr7_2:19634079-19634098 None:intergenic 10.0%
!! ATATATATTCTTCAAATATT+TGG + chr7_2:19634347-19634366 Msa1051880:intron 10.0%
!! TAATGTCATAATATAAATTA+TGG - chr7_2:19635008-19635027 None:intergenic 10.0%
!! ATTATTTAACTAATCAATTA+TGG - chr7_2:19635057-19635076 None:intergenic 10.0%
!! AGTTTAAAGAAAATAAAATA+TGG + chr7_2:19635677-19635696 Msa1051880:intron 10.0%
!! AATATATATTTATATAGTCA+TGG - chr7_2:19636230-19636249 None:intergenic 10.0%
!!! TTAAATTTGATACTATTTTA+CGG + chr7_2:19636274-19636293 Msa1051880:intron 10.0%
!!! GTTTACAATTATATTTTGAA+CGG - chr7_2:19630060-19630079 None:intergenic 15.0%
!! TATGATCTATTAATTTCAAT+TGG + chr7_2:19630380-19630399 Msa1051880:intron 15.0%
!! AACAAATTATCAATTAAGTT+GGG - chr7_2:19630420-19630439 None:intergenic 15.0%
!! AATTAACTATCAATTAAGTT+GGG - chr7_2:19630444-19630463 None:intergenic 15.0%
!! AAATTAACTATCAATTAAGT+TGG - chr7_2:19630445-19630464 None:intergenic 15.0%
!!! AACTTAATTGATAGTTAATT+TGG + chr7_2:19630444-19630463 Msa1051880:intron 15.0%
!! GAAAACCATATAATAATATA+AGG + chr7_2:19630577-19630596 Msa1051880:intron 15.0%
!! ATGGTAGATATATAAATATA+AGG - chr7_2:19630913-19630932 None:intergenic 15.0%
!! ATTCTTCAATAAAAAAAACA+TGG - chr7_2:19630932-19630951 None:intergenic 15.0%
!!! GTTTAAGTTATGTTTTTTTA+AGG + chr7_2:19631029-19631048 Msa1051880:intron 15.0%
!! GATAATTAATTGAAAATATG+TGG + chr7_2:19631265-19631284 Msa1051880:intron 15.0%
!!! CTATTTCATATTTTCTTTTT+TGG - chr7_2:19631679-19631698 None:intergenic 15.0%
!! AAAAAAATGTGTATTTAATG+TGG - chr7_2:19631736-19631755 None:intergenic 15.0%
!!! TTAAATTACATATTGGTTTA+AGG - chr7_2:19631818-19631837 None:intergenic 15.0%
!!! ATTTTTTTAATGTCACTATA+GGG - chr7_2:19631960-19631979 None:intergenic 15.0%
!! TCTTTAATATAGTTATTCAA+AGG + chr7_2:19632543-19632562 Msa1051880:intron 15.0%
!! CTTTAATATAGTTATTCAAA+GGG + chr7_2:19632544-19632563 Msa1051880:intron 15.0%
!!! AATGATAATCTTTAATTTAG+AGG + chr7_2:19632569-19632588 Msa1051880:intron 15.0%
!!! TGGTATATATTTTTTTTAAG+AGG + chr7_2:19633039-19633058 Msa1051880:intron 15.0%
!!! ATGTAATTTTATGATCTATT+TGG + chr7_2:19633455-19633474 Msa1051880:intron 15.0%
!! AAATTTATATAAAAACTAGG+GGG - chr7_2:19634076-19634095 None:intergenic 15.0%
!! CAAATTTATATAAAAACTAG+GGG - chr7_2:19634077-19634096 None:intergenic 15.0%
!! TATAAATTTGATATTATGCA+TGG + chr7_2:19634087-19634106 Msa1051880:intron 15.0%
!! TAAGAATAGTAATTACTTAT+AGG + chr7_2:19635498-19635517 Msa1051880:intron 15.0%
!! AAGAATAGTAATTACTTATA+GGG + chr7_2:19635499-19635518 Msa1051880:intron 15.0%
!! AAAATTTAAACAACGAAAAT+AGG + chr7_2:19636318-19636337 Msa1051880:intron 15.0%
!! TACTGAAAAAATATTATACA+TGG + chr7_2:19637299-19637318 Msa1051880:intron 15.0%
!!! AACTTTATTTTATAAGATTC+TGG + chr7_2:19637374-19637393 Msa1051880:intron 15.0%
!! AATAACAAATAAAATTAGAG+AGG - chr7_2:19637988-19638007 None:intergenic 15.0%
!!! CTCTAATTTTATTTGTTATT+TGG + chr7_2:19637988-19638007 Msa1051880:intron 15.0%
!!! NNNNNNNGTTTTATACCCAA+GGG - chr7_2:19629253-19629272 None:intergenic 20.0%
!!! NNNNNNNNGTTTTATACCCA+AGG - chr7_2:19629254-19629273 None:intergenic 20.0%
!!! ATTCATTTTCCAAATACAAA+TGG + chr7_2:19629571-19629590 Msa1051880:intron 20.0%
!! AAATTGAAGATCAATAACAA+AGG + chr7_2:19630088-19630107 Msa1051880:intron 20.0%
!! AATTGAAGATCAATAACAAA+GGG + chr7_2:19630089-19630108 Msa1051880:intron 20.0%
!!! ACAAATTATCAATTAAGTTG+GGG - chr7_2:19630419-19630438 None:intergenic 20.0%
!! GAACAAATTATCAATTAAGT+TGG - chr7_2:19630421-19630440 None:intergenic 20.0%
!!! ATTAACTATCAATTAAGTTG+GGG - chr7_2:19630443-19630462 None:intergenic 20.0%
!!! GTTTTCAAAAAAAATTAGCT+TGG - chr7_2:19630563-19630582 None:intergenic 20.0%
!! TTGTGCCTTATATTATTATA+TGG - chr7_2:19630585-19630604 None:intergenic 20.0%
!! GAGAAATTATTCCATAAAAA+AGG + chr7_2:19631099-19631118 Msa1051880:intron 20.0%
!!! TGAAATATTGACCTTTTTTA+TGG - chr7_2:19631113-19631132 None:intergenic 20.0%
!!! TACTCTTTAAGATCTTTAAA+AGG - chr7_2:19631177-19631196 None:intergenic 20.0%
!!! AACATTTCCCTTTTTTTAAA+CGG + chr7_2:19631214-19631233 Msa1051880:intron 20.0%
!! ATCTAAACCGTTTAAAAAAA+GGG - chr7_2:19631224-19631243 None:intergenic 20.0%
!! TATCTAAACCGTTTAAAAAA+AGG - chr7_2:19631225-19631244 None:intergenic 20.0%
!!! TTTTTTTAAACGGTTTAGAT+AGG + chr7_2:19631224-19631243 Msa1051880:intron 20.0%
!!! TTAGATAGGTTTTCTTAATA+TGG + chr7_2:19631238-19631257 Msa1051880:intron 20.0%
!!! AATTGTGTTTTGGTATTTTA+TGG + chr7_2:19631299-19631318 Msa1051880:intron 20.0%
!!! TTAAGAGGTATGTAAAAATA+CGG - chr7_2:19631362-19631381 None:intergenic 20.0%
!!! TTCTCTATGTTTTAAATCAA+TGG + chr7_2:19631429-19631448 Msa1051880:intron 20.0%
!! AGAATGTTAATGAGTATAAT+TGG + chr7_2:19631513-19631532 Msa1051880:intron 20.0%
!!! TCTAAGACAATTTCTATTAA+TGG + chr7_2:19631622-19631641 Msa1051880:intron 20.0%
!! GTGCAATTTAAATTACATAT+TGG - chr7_2:19631825-19631844 None:intergenic 20.0%
!!! CATTTTTTTAATGTCACTAT+AGG - chr7_2:19631961-19631980 None:intergenic 20.0%
!! CTATAGTGACATTAAAAAAA+TGG + chr7_2:19631959-19631978 Msa1051880:intron 20.0%
!! AAAAAAAAAGCTGTAAACTA+TGG - chr7_2:19632356-19632375 None:intergenic 20.0%
!! TATGATTCACATCATAATAT+TGG - chr7_2:19632466-19632485 None:intergenic 20.0%
!! CTAACTTTCAAAAGTTAAAT+AGG + chr7_2:19632853-19632872 Msa1051880:intron 20.0%
!! CGTTTATATATATGGTATTT+AGG + chr7_2:19633198-19633217 Msa1051880:intron 20.0%
!! TAACAACACAAATAAATCTT+TGG - chr7_2:19633387-19633406 None:intergenic 20.0%
!!! AATTTTATGATCTATTTGGA+AGG + chr7_2:19633459-19633478 Msa1051880:intron 20.0%
!!! TTGTTTTCTTTTGATTTTAG+TGG + chr7_2:19633716-19633735 Msa1051880:intron 20.0%
!!! TGTTTTCTTTTGATTTTAGT+GGG + chr7_2:19633717-19633736 Msa1051880:intron 20.0%
!!! AAGAAATTTCTTTGAGAAAT+AGG - chr7_2:19633802-19633821 None:intergenic 20.0%
!!! AAATTTTTTAGTGTTTAGCA+TGG + chr7_2:19634674-19634693 Msa1051880:intron 20.0%
!! AAATTGTGTACCTTTAAATT+AGG + chr7_2:19634748-19634767 Msa1051880:intron 20.0%
!! TTAAACTATTCTGAATATTC+TGG - chr7_2:19634833-19634852 None:intergenic 20.0%
!!! TAGCATTTTTTAAAATGCTT+GGG - chr7_2:19635341-19635360 None:intergenic 20.0%
!!! ATAGCATTTTTTAAAATGCT+TGG - chr7_2:19635342-19635361 None:intergenic 20.0%
!!! GATTAAGTCTATGATATTTT+GGG - chr7_2:19635381-19635400 None:intergenic 20.0%
!!! TGATTAAGTCTATGATATTT+TGG - chr7_2:19635382-19635401 None:intergenic 20.0%
!!! TGAATTTCCTATTTTCTTAT+GGG - chr7_2:19635625-19635644 None:intergenic 20.0%
!!! TTGAATTTCCTATTTTCTTA+TGG - chr7_2:19635626-19635645 None:intergenic 20.0%
!! ATTTATTACCTCATAAAATG+TGG + chr7_2:19635822-19635841 Msa1051880:intron 20.0%
!! GGATAAAAAAAAATTACCTT+TGG - chr7_2:19636492-19636511 None:intergenic 20.0%
!! ATACTTAATACACAACAAAA+TGG - chr7_2:19636513-19636532 None:intergenic 20.0%
!!! TTTTGTTGTGTATTAAGTAT+TGG + chr7_2:19636513-19636532 Msa1051880:intron 20.0%
!!! TTTGTTGTGTATTAAGTATT+GGG + chr7_2:19636514-19636533 Msa1051880:intron 20.0%
!!! TTGATTGAATTAAGTGATTT+TGG + chr7_2:19636692-19636711 Msa1051880:intron 20.0%
!!! TTTTGATTTGATTATTCTGT+AGG + chr7_2:19636751-19636770 Msa1051880:intron 20.0%
!!! TTTGATTTGATTATTCTGTA+GGG + chr7_2:19636752-19636771 Msa1051880:intron 20.0%
!! ATTGAAAAATTAATGACACA+GGG - chr7_2:19636906-19636925 None:intergenic 20.0%
!!! AGCTAGTTATACTTTAAAAA+TGG + chr7_2:19637084-19637103 Msa1051880:intron 20.0%
!! ATGTTTGGATTAATGATATA+GGG - chr7_2:19637141-19637160 None:intergenic 20.0%
!! TATGTTTGGATTAATGATAT+AGG - chr7_2:19637142-19637161 None:intergenic 20.0%
!! TTAATCCAAACATAATGTTA+TGG + chr7_2:19637148-19637167 Msa1051880:intron 20.0%
!! TGTTGAAAGAATATTATACA+TGG + chr7_2:19637245-19637264 Msa1051880:intron 20.0%
!!! AATATTTTTTCAGTATGACA+GGG - chr7_2:19637294-19637313 None:intergenic 20.0%
!!! TAATATTTTTTCAGTATGAC+AGG - chr7_2:19637295-19637314 None:intergenic 20.0%
!! TATAATTATCTATCAGTAGT+TGG + chr7_2:19637479-19637498 Msa1051880:intron 20.0%
!!! TTATTTGATGATTATGCATA+TGG + chr7_2:19637606-19637625 Msa1051880:intron 20.0%
!! CTATATAGAAATTAGAACAA+TGG - chr7_2:19638221-19638240 None:intergenic 20.0%
!! AACTAAATTGAATACTATTG+GGG - chr7_2:19638326-19638345 None:intergenic 20.0%
!! GAACTAAATTGAATACTATT+GGG - chr7_2:19638327-19638346 None:intergenic 20.0%
!! TGAACTAAATTGAATACTAT+TGG - chr7_2:19638328-19638347 None:intergenic 20.0%
! TATGATTTCGTTTCAGATTT+AGG + chr7_2:19629126-19629145 Msa1051880:intron 25.0%
! ATGATTTCGTTTCAGATTTA+GGG + chr7_2:19629127-19629146 Msa1051880:intron 25.0%
! AGTGTACAATAGATAAAATG+AGG + chr7_2:19629613-19629632 Msa1051880:intron 25.0%
! GATTCTCATTAATGTCAATT+TGG - chr7_2:19629725-19629744 None:intergenic 25.0%
!! GAATCAAATCTAAAACATTG+AGG + chr7_2:19629740-19629759 Msa1051880:intron 25.0%
!! ACTCAACTTATTTGAGTTAA+TGG - chr7_2:19629918-19629937 None:intergenic 25.0%
!! TAGACGAATAAAAGTATATG+CGG - chr7_2:19630175-19630194 None:intergenic 25.0%
! TTTATTCGTCTACGAAAATT+TGG + chr7_2:19630183-19630202 Msa1051880:intron 25.0%
!! TTGATATTTTCTTTTTCCAC+CGG + chr7_2:19630261-19630280 Msa1051880:intron 25.0%
!!! TTATCTCTTTTGAAGAAAAC+CGG - chr7_2:19630283-19630302 None:intergenic 25.0%
!!! CACATTCTAGTTTTATAATG+TGG + chr7_2:19630315-19630334 Msa1051880:intron 25.0%
! GATCTATTAATTTCAATTGG+TGG + chr7_2:19630383-19630402 Msa1051880:intron 25.0%
! CGAAATAAGAAACATTAGAA+TGG + chr7_2:19630657-19630676 Msa1051880:intron 25.0%
! TAACAATGTAAGAATATTGC+AGG - chr7_2:19630795-19630814 None:intergenic 25.0%
!! TAGGTTTTCTTAATATGGTT+TGG + chr7_2:19631243-19631262 Msa1051880:intron 25.0%
!! TTAGTTCATGAATTGTGTTT+TGG + chr7_2:19631289-19631308 Msa1051880:intron 25.0%
!!! TTTTGGTTTTGCTAATGAAA+GGG - chr7_2:19631662-19631681 None:intergenic 25.0%
!!! TTTTTGGTTTTGCTAATGAA+AGG - chr7_2:19631663-19631682 None:intergenic 25.0%
! GTTTAAGGAAATGTTAACTT+GGG - chr7_2:19631803-19631822 None:intergenic 25.0%
! GGCACTATAAATTATTAACT+TGG + chr7_2:19631874-19631893 Msa1051880:intron 25.0%
! AGAAGGAATTTATAGAAAGT+TGG + chr7_2:19632115-19632134 Msa1051880:intron 25.0%
!!! CAATTAATCCCATTTGTTTT+AGG - chr7_2:19632190-19632209 None:intergenic 25.0%
!!! TTTTTTTCAATTCTGTGACA+GGG - chr7_2:19632254-19632273 None:intergenic 25.0%
!!! ATTTTTTTCAATTCTGTGAC+AGG - chr7_2:19632255-19632274 None:intergenic 25.0%
! TCAAAAGTTAAATAGGAAGT+AGG + chr7_2:19632860-19632879 Msa1051880:intron 25.0%
! TTAAAAAGGGTCAAATTGAA+GGG - chr7_2:19633093-19633112 None:intergenic 25.0%
! ACCATATATATAAACGTAGA+GGG - chr7_2:19633194-19633213 None:intergenic 25.0%
! TACCATATATATAAACGTAG+AGG - chr7_2:19633195-19633214 None:intergenic 25.0%
! TACACAATATTTACGTGATT+TGG + chr7_2:19633344-19633363 Msa1051880:intron 25.0%
! ACACAATATTTACGTGATTT+GGG + chr7_2:19633345-19633364 Msa1051880:intron 25.0%
! GTCATTTATAGAATAAGCAA+GGG - chr7_2:19633637-19633656 None:intergenic 25.0%
! AGTCATTTATAGAATAAGCA+AGG - chr7_2:19633638-19633657 None:intergenic 25.0%
! AATGTCACAATTATGTGTTA+TGG + chr7_2:19633863-19633882 Msa1051880:intron 25.0%
! CATTCATATTAGTTGCTATA+GGG + chr7_2:19633997-19634016 Msa1051880:intron 25.0%
! AATACTCATTTATAAGTCTG+TGG + chr7_2:19635418-19635437 Msa1051880:intron 25.0%
! TTATGGAATTGAAAACTCAT+TGG - chr7_2:19635456-19635475 None:intergenic 25.0%
!! ATGTGGATAAATGACTTTTA+TGG - chr7_2:19635473-19635492 None:intergenic 25.0%
! TAAAAGTCATTTATCCACAT+AGG + chr7_2:19635473-19635492 Msa1051880:intron 25.0%
! TTACTATTCTTATACCTATG+TGG - chr7_2:19635490-19635509 None:intergenic 25.0%
! ATGAAAACCCATAAGAAAAT+AGG + chr7_2:19635615-19635634 Msa1051880:intron 25.0%
! GTTCATTATAGATATTCTAG+TGG - chr7_2:19635713-19635732 None:intergenic 25.0%
! ATATATATTTGCATGCTAAG+AGG + chr7_2:19635868-19635887 Msa1051880:intron 25.0%
! ATCTCAATAAGCATCATAAT+TGG - chr7_2:19635930-19635949 None:intergenic 25.0%
! ATCTTAAGAGACTTTAAACA+TGG - chr7_2:19635994-19636013 None:intergenic 25.0%
! TTTGTGCACACTATTAAATA+TGG - chr7_2:19636020-19636039 None:intergenic 25.0%
! AAATAAGTGATTAGTGAAAG+TGG + chr7_2:19636646-19636665 Msa1051880:intron 25.0%
! CATTGAAAAATTAATGACAC+AGG - chr7_2:19636907-19636926 None:intergenic 25.0%
! TAGAATGAAATGAAATGTAG+TGG + chr7_2:19637044-19637063 Msa1051880:intron 25.0%
!!! TGAAATGTAGTGGATTAAAA+TGG + chr7_2:19637054-19637073 Msa1051880:intron 25.0%
!! TACATTAACAGAAGCATATT+TGG - chr7_2:19637537-19637556 None:intergenic 25.0%
!! TAGTTTGATGATTATGCATA+TGG + chr7_2:19637631-19637650 Msa1051880:intron 25.0%
!!! ATTTGTTATTTGGTGTTTTC+AGG + chr7_2:19637998-19638017 Msa1051880:intron 25.0%
! CATAGAATTGAAAACATCAT+GGG - chr7_2:19638077-19638096 None:intergenic 25.0%
! ACATAGAATTGAAAACATCA+TGG - chr7_2:19638078-19638097 None:intergenic 25.0%
!! AAAATTCTAGTTGTAGACTA+TGG + chr7_2:19638118-19638137 Msa1051880:three_prime_UTR 25.0%
!! TAGTATTCAATTTAGTTCAG+TGG + chr7_2:19638329-19638348 Msa1051880:three_prime_UTR 25.0%
TACTGAATGAAAGAAGCTTA+CGG - chr7_2:19629090-19629109 None:intergenic 30.0%
!! TGAAAGTATTTGAGCAATTG+AGG + chr7_2:19629424-19629443 Msa1051880:intron 30.0%
!! GAAAGTATTTGAGCAATTGA+GGG + chr7_2:19629425-19629444 Msa1051880:intron 30.0%
! AAAGTATTTGAGCAATTGAG+GGG + chr7_2:19629426-19629445 Msa1051880:intron 30.0%
!! CATGATGCAAATTGTTGTTT+AGG - chr7_2:19629452-19629471 None:intergenic 30.0%
TAGCAATCACCATTTGTATT+TGG - chr7_2:19629583-19629602 None:intergenic 30.0%
! TGGTTTGTGGTAAAGAATTT+AGG - chr7_2:19629654-19629673 None:intergenic 30.0%
! AGATTTGAAATTAAAGTCGC+TGG - chr7_2:19629680-19629699 None:intergenic 30.0%
! TCAAATCTAAAACATTGAGG+AGG + chr7_2:19629743-19629762 Msa1051880:intron 30.0%
!!! TTTTGAAATTCAAGTTCGTC+TGG - chr7_2:19629790-19629809 None:intergenic 30.0%
!!! TTTTTTGTTTTCCTCTTGCT+CGG + chr7_2:19629863-19629882 Msa1051880:intron 30.0%
GATTAAGAGTTGAAAGTTCT+TGG - chr7_2:19629896-19629915 None:intergenic 30.0%
AGTAATAAACCGTCCTATTA+GGG - chr7_2:19629949-19629968 None:intergenic 30.0%
AAGTAATAAACCGTCCTATT+AGG - chr7_2:19629950-19629969 None:intergenic 30.0%
GTAATATAAGAATTCGAGAG+TGG - chr7_2:19630034-19630053 None:intergenic 30.0%
CAATAACAAAGGGATTAAGT+TGG + chr7_2:19630099-19630118 Msa1051880:intron 30.0%
CACTCTTTAAGCATTCTAAA+AGG + chr7_2:19631077-19631096 Msa1051880:intron 30.0%
AATGAGTATAATTGGAGCAT+TGG + chr7_2:19631521-19631540 Msa1051880:intron 30.0%
!! TAATGAAAGGGTATTGGTTA+AGG - chr7_2:19631650-19631669 None:intergenic 30.0%
!! TTTTGCTAATGAAAGGGTAT+TGG - chr7_2:19631656-19631675 None:intergenic 30.0%
GGTTTAAGGAAATGTTAACT+TGG - chr7_2:19631804-19631823 None:intergenic 30.0%
TTGCACAAAAATTGAGAGAA+AGG + chr7_2:19631839-19631858 Msa1051880:intron 30.0%
TGCACAAAAATTGAGAGAAA+GGG + chr7_2:19631840-19631859 Msa1051880:intron 30.0%
!! AGAGAAAGGGTTTTAACATT+TGG + chr7_2:19631853-19631872 Msa1051880:intron 30.0%
! TTTTAATGTCACTATAGGGT+AGG - chr7_2:19631956-19631975 None:intergenic 30.0%
TTGTTCATTACACATTTCCA+GGG - chr7_2:19632152-19632171 None:intergenic 30.0%
ATCAAATGTAGCTACCTATA+TGG - chr7_2:19632216-19632235 None:intergenic 30.0%
TTGTAGCACTAGTATACAAT+GGG + chr7_2:19632493-19632512 Msa1051880:intron 30.0%
CAAATAAAAGGTGGAATTGA+AGG - chr7_2:19632597-19632616 None:intergenic 30.0%
!! TCAATTCCACCTTTTATTTG+CGG + chr7_2:19632597-19632616 Msa1051880:intron 30.0%
AACACACAATTGAACACATA+TGG + chr7_2:19633019-19633038 Msa1051880:intron 30.0%
CTTAAAAAGGGTCAAATTGA+AGG - chr7_2:19633094-19633113 None:intergenic 30.0%
AAAACGAGGTGACTTAAAAA+GGG - chr7_2:19633106-19633125 None:intergenic 30.0%
TTTCCAAGCAAGATCAATAA+TGG + chr7_2:19633123-19633142 Msa1051880:intron 30.0%
!! TAATGGCTTGTTATTGCATA+TGG + chr7_2:19633140-19633159 Msa1051880:intron 30.0%
ACCCTCTACGTTTATATATA+TGG + chr7_2:19633190-19633209 Msa1051880:intron 30.0%
!! TGTCCTTTCTGAAATGAAAA+AGG + chr7_2:19633419-19633438 Msa1051880:intron 30.0%
!! AGACCTTTTTCATTTCAGAA+AGG - chr7_2:19633425-19633444 None:intergenic 30.0%
AAACTTGTACTGTGAATATG+TGG + chr7_2:19633551-19633570 Msa1051880:intron 30.0%
TAAGAATACAATCTAGCTAG+CGG - chr7_2:19633668-19633687 None:intergenic 30.0%
ACAAATACACATTAAACCCT+AGG - chr7_2:19633930-19633949 None:intergenic 30.0%
AGCAACTAATATGAATGGAT+GGG - chr7_2:19633994-19634013 None:intergenic 30.0%
TAGCAACTAATATGAATGGA+TGG - chr7_2:19633995-19634014 None:intergenic 30.0%
CCTATAGCAACTAATATGAA+TGG - chr7_2:19633999-19634018 None:intergenic 30.0%
CCATTCATATTAGTTGCTAT+AGG + chr7_2:19633996-19634015 Msa1051880:intron 30.0%
CAATTCAAAAAAACTATCCC+TGG + chr7_2:19634233-19634252 Msa1051880:intron 30.0%
CAATTTACATGATTGTGAAC+CGG - chr7_2:19634313-19634332 None:intergenic 30.0%
!!! ATCTTGAATTTTTTTTCCGG+GGG - chr7_2:19634375-19634394 None:intergenic 30.0%
!!! GATCTTGAATTTTTTTTCCG+GGG - chr7_2:19634376-19634395 None:intergenic 30.0%
!!! GGATCTTGAATTTTTTTTCC+GGG - chr7_2:19634377-19634396 None:intergenic 30.0%
!!! CGGATCTTGAATTTTTTTTC+CGG - chr7_2:19634378-19634397 None:intergenic 30.0%
TGTATGGCAAAATATTCATC+AGG - chr7_2:19634462-19634481 None:intergenic 30.0%
TTCCACTTTCTTAAATCGAT+AGG + chr7_2:19634641-19634660 Msa1051880:intron 30.0%
CCTTCATCAACCTAATTTAA+AGG - chr7_2:19634761-19634780 None:intergenic 30.0%
!! CCTTTAAATTAGGTTGATGA+AGG + chr7_2:19634758-19634777 Msa1051880:intron 30.0%
TTTAAATAGCTAAACGACTG+AGG + chr7_2:19634871-19634890 Msa1051880:intron 30.0%
TTAAATAGCTAAACGACTGA+GGG + chr7_2:19634872-19634891 Msa1051880:intron 30.0%
ATTGGGCTATTCTTTCTAAA+TGG - chr7_2:19634945-19634964 None:intergenic 30.0%
! GTTGATGAATATGTGTGATT+GGG - chr7_2:19634962-19634981 None:intergenic 30.0%
!! AGTTGATGAATATGTGTGAT+TGG - chr7_2:19634963-19634982 None:intergenic 30.0%
!!! GTATGATTTGTTTTCCCTAT+CGG - chr7_2:19635237-19635256 None:intergenic 30.0%
! GAGAATGTGTCATTAAAGAA+TGG + chr7_2:19635315-19635334 Msa1051880:intron 30.0%
!!! CTATGATATTTTGGGTTAGT+GGG - chr7_2:19635373-19635392 None:intergenic 30.0%
!!! TCTATGATATTTTGGGTTAG+TGG - chr7_2:19635374-19635393 None:intergenic 30.0%
ATTTATAAGTCTGTGGTTAG+TGG + chr7_2:19635425-19635444 Msa1051880:intron 30.0%
! TCACATGTTTTGCTAAAATG+TGG - chr7_2:19635593-19635612 None:intergenic 30.0%
AAATTCAAGAATCTCCGAAA+TGG + chr7_2:19635638-19635657 Msa1051880:intron 30.0%
AAGACAATATCATACTCGAT+AGG + chr7_2:19635771-19635790 Msa1051880:intron 30.0%
! GATGCTTAAGTCAATTTTGT+TGG - chr7_2:19635908-19635927 None:intergenic 30.0%
! ATAGTGTGCACAAAAGTATA+TGG + chr7_2:19636026-19636045 Msa1051880:intron 30.0%
TAAACAACGAAAATAGGTTG+AGG + chr7_2:19636324-19636343 Msa1051880:intron 30.0%
!! TATGAGTTGATTAGATTGCA+AGG + chr7_2:19636559-19636578 Msa1051880:intron 30.0%
!! GTTGTAGATTGATTTTGTAG+TGG + chr7_2:19636623-19636642 Msa1051880:intron 30.0%
!!! TGGAGTTTTGAATGTTGATT+TGG + chr7_2:19636712-19636731 Msa1051880:intron 30.0%
!! TTTGAATGTTGATTTGGTAG+TGG + chr7_2:19636718-19636737 Msa1051880:intron 30.0%
AATTGAGTACTATGCTATGT+TGG + chr7_2:19636822-19636841 Msa1051880:CDS 30.0%
ACAACTTACTTCCATTGTAA+TGG - chr7_2:19636864-19636883 None:intergenic 30.0%
TTCAATGTTGATATGCATTC+AGG + chr7_2:19636920-19636939 Msa1051880:intron 30.0%
TCAATGTTGATATGCATTCA+GGG + chr7_2:19636921-19636940 Msa1051880:intron 30.0%
TTTGGATTAATGATATAGGG+TGG - chr7_2:19637138-19637157 None:intergenic 30.0%
TGTGACCATAACATTATGTT+TGG - chr7_2:19637156-19637175 None:intergenic 30.0%
ATTGTGTATGTATACCCTTA+TGG + chr7_2:19637183-19637202 Msa1051880:intron 30.0%
ATTATTGCATGTGACCATAA+GGG - chr7_2:19637200-19637219 None:intergenic 30.0%
AATTATTGCATGTGACCATA+AGG - chr7_2:19637201-19637220 None:intergenic 30.0%
TAAAGAAAGCAACATATACC+AGG - chr7_2:19637932-19637951 None:intergenic 30.0%
!!! TGTACGATGCTTGTTATTTT+GGG + chr7_2:19638148-19638167 Msa1051880:three_prime_UTR 30.0%
! TATTCAATTTAGTTCAGTGG+AGG + chr7_2:19638332-19638351 Msa1051880:three_prime_UTR 30.0%
AAGAGTGGAAAATATACCCT+TGG + chr7_2:19629234-19629253 Msa1051880:intron 35.0%
AGAGTGGAAAATATACCCTT+GGG + chr7_2:19629235-19629254 Msa1051880:intron 35.0%
ATCAGATTGTAGCTTTCGAT+CGG + chr7_2:19629376-19629395 Msa1051880:intron 35.0%
CTTTCGATCGGTATTAAAAG+AGG + chr7_2:19629388-19629407 Msa1051880:intron 35.0%
GAAATTAAAGTCGCTGGAAT+TGG - chr7_2:19629674-19629693 None:intergenic 35.0%
!!! TTTTTGTTTTCCTCTTGCTC+GGG + chr7_2:19629864-19629883 Msa1051880:intron 35.0%
TGAGTTACTCAATCCCTAAT+AGG + chr7_2:19629933-19629952 Msa1051880:intron 35.0%
TTACTCAATCCCTAATAGGA+CGG + chr7_2:19629937-19629956 Msa1051880:intron 35.0%
AGCTATAGAGAGAAGATGAA+AGG - chr7_2:19630239-19630258 None:intergenic 35.0%
TTTCATCTTCTCTCTATAGC+TGG + chr7_2:19630238-19630257 Msa1051880:intron 35.0%
ATTCATAAGCACTAAGTGTC+AGG + chr7_2:19630470-19630489 Msa1051880:intron 35.0%
AGTTGTGAATGATGAAGTTG+AGG + chr7_2:19630619-19630638 Msa1051880:intron 35.0%
CAATGTAAGAATATTGCAGG+AGG - chr7_2:19630792-19630811 None:intergenic 35.0%
TGTACTTTCGATCTAAACAG+CGG + chr7_2:19630818-19630837 Msa1051880:intron 35.0%
!! AAAGATCTTAAAGAGTACCC+CGG + chr7_2:19631180-19631199 Msa1051880:intron 35.0%
CACTTGTTTGTGTAGTTAAG+AGG - chr7_2:19631377-19631396 None:intergenic 35.0%
!! CATGCTAACTTGTTTACTCA+AGG + chr7_2:19631454-19631473 Msa1051880:intron 35.0%
TTACTCAAGGACACAAGTTA+AGG + chr7_2:19631467-19631486 Msa1051880:intron 35.0%
AAGAAACATGCAATGCAAAG+TGG + chr7_2:19632083-19632102 Msa1051880:intron 35.0%
CAAAGTGGTAAGACAAAAGA+AGG + chr7_2:19632098-19632117 Msa1051880:intron 35.0%
GTTGTTCATTACACATTTCC+AGG - chr7_2:19632153-19632172 None:intergenic 35.0%
!! GTTTTAGGTCGTGGAATATT+GGG - chr7_2:19632175-19632194 None:intergenic 35.0%
!! TGTTTTAGGTCGTGGAATAT+TGG - chr7_2:19632176-19632195 None:intergenic 35.0%
ATTCCACGACCTAAAACAAA+TGG + chr7_2:19632178-19632197 Msa1051880:intron 35.0%
TTCCACGACCTAAAACAAAT+GGG + chr7_2:19632179-19632198 Msa1051880:intron 35.0%
GGGATTAATTGAGACCATAT+AGG + chr7_2:19632199-19632218 Msa1051880:intron 35.0%
ACACATGAGAGAAAAGAGAA+TGG + chr7_2:19632316-19632335 Msa1051880:intron 35.0%
CTTGTAGCACTAGTATACAA+TGG + chr7_2:19632492-19632511 Msa1051880:intron 35.0%
TTCTAAGCTCCGCAAATAAA+AGG - chr7_2:19632609-19632628 None:intergenic 35.0%
TCCATATATGACTGATCATG+AGG + chr7_2:19632693-19632712 Msa1051880:intron 35.0%
TCTAATTAGCATTCTTGCAG+TGG + chr7_2:19632797-19632816 Msa1051880:intron 35.0%
GAAAACGAGGTGACTTAAAA+AGG - chr7_2:19633107-19633126 None:intergenic 35.0%
AAGCCATTATTGATCTTGCT+TGG - chr7_2:19633129-19633148 None:intergenic 35.0%
!! AAACGTAGAGGGTTGATATT+TGG - chr7_2:19633183-19633202 None:intergenic 35.0%
TTGTTGCAAGAATCTTTGTG+TGG + chr7_2:19633251-19633270 Msa1051880:intron 35.0%
! AAGAATCTTTGTGTGGATTG+TGG + chr7_2:19633258-19633277 Msa1051880:intron 35.0%
GTTTGTTTGTCGAGTCTATT+TGG + chr7_2:19633321-19633340 Msa1051880:intron 35.0%
AATGAAAAAGGTCTCTTGCT+TGG + chr7_2:19633431-19633450 Msa1051880:intron 35.0%
AAGAATACAATCTAGCTAGC+GGG - chr7_2:19633667-19633686 None:intergenic 35.0%
! AATCCTTCTAAAGGGCTAAT+AGG - chr7_2:19633902-19633921 None:intergenic 35.0%
AGGCATCAAATCCTTCTAAA+GGG - chr7_2:19633910-19633929 None:intergenic 35.0%
TAGGCATCAAATCCTTCTAA+AGG - chr7_2:19633911-19633930 None:intergenic 35.0%
TTTAGAAGGATTTGATGCCT+AGG + chr7_2:19633910-19633929 Msa1051880:intron 35.0%
TTAGAAGGATTTGATGCCTA+GGG + chr7_2:19633911-19633930 Msa1051880:intron 35.0%
ACTAATATGAATGGATGGGT+TGG - chr7_2:19633990-19634009 None:intergenic 35.0%
TTCAAAAAAACTATCCCTGG+TGG + chr7_2:19634236-19634255 Msa1051880:intron 35.0%
TCAAAAAAACTATCCCTGGT+GGG + chr7_2:19634237-19634256 Msa1051880:intron 35.0%
TATTGCCATGATTCATGCAA+GGG - chr7_2:19634279-19634298 None:intergenic 35.0%
ATATTGCCATGATTCATGCA+AGG - chr7_2:19634280-19634299 None:intergenic 35.0%
! TTTTGGCCAAGGCAATTATT+GGG - chr7_2:19634421-19634440 None:intergenic 35.0%
!! ATTTTGGCCAAGGCAATTAT+TGG - chr7_2:19634422-19634441 None:intergenic 35.0%
CAATGATTGGACATCACATA+GGG + chr7_2:19634485-19634504 Msa1051880:intron 35.0%
AAAGAAAGGAACATCCAGAT+GGG - chr7_2:19634526-19634545 None:intergenic 35.0%
!! GACCTATCGATTTAAGAAAG+TGG - chr7_2:19634646-19634665 None:intergenic 35.0%
! CTGAATATTCTGGTGCTAAA+CGG - chr7_2:19634823-19634842 None:intergenic 35.0%
AGAATAGTTTAACCGTCTGA+TGG + chr7_2:19634841-19634860 Msa1051880:intron 35.0%
GAATAGTTTAACCGTCTGAT+GGG + chr7_2:19634842-19634861 Msa1051880:intron 35.0%
ATTTAGCTAAGCCTAATGAG+AGG - chr7_2:19634904-19634923 None:intergenic 35.0%
TCTCATTAGGCTTAGCTAAA+TGG + chr7_2:19634903-19634922 Msa1051880:intron 35.0%
! TTGAGTATTGTCATCCAAGT+GGG - chr7_2:19635094-19635113 None:intergenic 35.0%
! ATTGAGTATTGTCATCCAAG+TGG - chr7_2:19635095-19635114 None:intergenic 35.0%
ATGCAGAAATTGAATCCGAT+AGG + chr7_2:19635219-19635238 Msa1051880:intron 35.0%
TGCAGAAATTGAATCCGATA+GGG + chr7_2:19635220-19635239 Msa1051880:intron 35.0%
GTGTCTATGTTGATCCATTT+CGG - chr7_2:19635655-19635674 None:intergenic 35.0%
! CCAACATTCCACATTTTATG+AGG - chr7_2:19635833-19635852 None:intergenic 35.0%
CCTCATAAAATGTGGAATGT+TGG + chr7_2:19635830-19635849 Msa1051880:intron 35.0%
!! ATTACCTTTGGAACTCCTAA+GGG - chr7_2:19636480-19636499 None:intergenic 35.0%
!! AATTACCTTTGGAACTCCTA+AGG - chr7_2:19636481-19636500 None:intergenic 35.0%
TCAATTTCAGACTTCCTCAA+AGG - chr7_2:19636808-19636827 None:intergenic 35.0%
TTAATGACACAGGGAAGTAA+AGG - chr7_2:19636897-19636916 None:intergenic 35.0%
TATGCATTCAGGGATTGTTT+AGG + chr7_2:19636931-19636950 Msa1051880:intron 35.0%
CATAATGTTATGGTCACATG+TGG + chr7_2:19637158-19637177 Msa1051880:intron 35.0%
TATCTATCAGTAGTTGGATG+TGG + chr7_2:19637485-19637504 Msa1051880:intron 35.0%
! CAGAAGCATATTTGGAAACA+AGG - chr7_2:19637529-19637548 None:intergenic 35.0%
!! ATAGTAACAAGTGCTGATCA+AGG - chr7_2:19637687-19637706 None:intergenic 35.0%
!! TTGTTGTTTCTCCAAATCGT+TGG + chr7_2:19637717-19637736 Msa1051880:intron 35.0%
!! TGTTGTTTCTCCAAATCGTT+GGG + chr7_2:19637718-19637737 Msa1051880:intron 35.0%
TAAGAAGAATCCCAACGATT+TGG - chr7_2:19637731-19637750 None:intergenic 35.0%
! TCTGTTATCAGTTGACTCTA+AGG + chr7_2:19637778-19637797 Msa1051880:intron 35.0%
ATCATAGACAATGTTGACCT+TGG + chr7_2:19637857-19637876 Msa1051880:intron 35.0%
TAGTTGTAGACTATGGTGTA+CGG + chr7_2:19638125-19638144 Msa1051880:three_prime_UTR 35.0%
!!! GTGTACGATGCTTGTTATTT+TGG + chr7_2:19638147-19638166 Msa1051880:three_prime_UTR 35.0%
TCACACCAAACCTTCAACAA+TGG + chr7_2:19629049-19629068 Msa1051880:exon 40.0%
! TGAAATTCAAGTTCGTCTGG+TGG - chr7_2:19629787-19629806 None:intergenic 40.0%
! ATGCGGATTGATTTAGATCG+CGG - chr7_2:19630158-19630177 None:intergenic 40.0%
CGTCTACGAAAATTTGGATG+AGG + chr7_2:19630189-19630208 Msa1051880:intron 40.0%
!! TCTCTTTTGAAGAAAACCGG+TGG - chr7_2:19630280-19630299 None:intergenic 40.0%
TGATGAAGTTGAGGTGATGA+TGG + chr7_2:19630628-19630647 Msa1051880:intron 40.0%
TACATTCATGACTGAACTGC+AGG - chr7_2:19630853-19630872 None:intergenic 40.0%
TCTTGTTAACGAGTGCTTCT+GGG + chr7_2:19631053-19631072 Msa1051880:intron 40.0%
!! AAGATCTTAAAGAGTACCCC+GGG + chr7_2:19631181-19631200 Msa1051880:intron 40.0%
TGCTTTCACTGCTTTAGTGT+TGG + chr7_2:19631910-19631929 Msa1051880:intron 40.0%
TGTTGGTCCCTCCTTATTAA+GGG + chr7_2:19631927-19631946 Msa1051880:intron 40.0%
ACACATTTCCAGGGTGAAAA+GGG - chr7_2:19632143-19632162 None:intergenic 40.0%
TACACATTTCCAGGGTGAAA+AGG - chr7_2:19632144-19632163 None:intergenic 40.0%
!!! ATCCCATTTGTTTTAGGTCG+TGG - chr7_2:19632184-19632203 None:intergenic 40.0%
GTCTTTGTATTGCCACTGTT+TGG + chr7_2:19632286-19632305 Msa1051880:intron 40.0%
TAAGCTCCGCAAATAAAAGG+TGG - chr7_2:19632606-19632625 None:intergenic 40.0%
GCCTCATGATCAGTCATATA+TGG - chr7_2:19632697-19632716 None:intergenic 40.0%
ATGCAATGCAAATGCATGCA+TGG + chr7_2:19632756-19632775 Msa1051880:intron 40.0%
! CATGCATGGTGATGACAATA+CGG + chr7_2:19632770-19632789 Msa1051880:intron 40.0%
AATTAGCATTCTTGCAGTGG+AGG + chr7_2:19632800-19632819 Msa1051880:intron 40.0%
AAATAGACACACACCTAGCT+AGG - chr7_2:19632832-19632851 None:intergenic 40.0%
CGGTGAAATAACATGCATGA+TGG + chr7_2:19632943-19632962 Msa1051880:intron 40.0%
GGGCAGATCGTATGAATATA+CGG - chr7_2:19633073-19633092 None:intergenic 40.0%
TTGATCTTGCTTGGAAAACG+AGG - chr7_2:19633120-19633139 None:intergenic 40.0%
!! GCTTGTTATTGCATATGGTG+TGG + chr7_2:19633145-19633164 Msa1051880:intron 40.0%
TGGATTGTGGTTAGAGCTAT+AGG + chr7_2:19633271-19633290 Msa1051880:intron 40.0%
GATGATCTCGAGTGAATATC+TGG + chr7_2:19633510-19633529 Msa1051880:intron 40.0%
CTTGTACTGTGAATATGTGG+TGG + chr7_2:19633554-19633573 Msa1051880:intron 40.0%
! TAGGGATTTGTTCTCTTACC+AGG + chr7_2:19634015-19634034 Msa1051880:intron 40.0%
! AGGGATTTGTTCTCTTACCA+GGG + chr7_2:19634016-19634035 Msa1051880:intron 40.0%
AACTAAAAAGCAGTGTGCCA+GGG - chr7_2:19634184-19634203 None:intergenic 40.0%
AAACTAAAAAGCAGTGTGCC+AGG - chr7_2:19634185-19634204 None:intergenic 40.0%
ATTGCCATGATTCATGCAAG+GGG - chr7_2:19634278-19634297 None:intergenic 40.0%
! CACTCACCTTCTATGGATTT+TGG - chr7_2:19634438-19634457 None:intergenic 40.0%
TTGCCATACAGACCAATGAT+TGG + chr7_2:19634472-19634491 Msa1051880:intron 40.0%
! TGTCCAATCATTGGTCTGTA+TGG - chr7_2:19634478-19634497 None:intergenic 40.0%
CCTATGTGATGTCCAATCAT+TGG - chr7_2:19634487-19634506 None:intergenic 40.0%
CCAATGATTGGACATCACAT+AGG + chr7_2:19634484-19634503 Msa1051880:intron 40.0%
CAAAGAAAGGAACATCCAGA+TGG - chr7_2:19634527-19634546 None:intergenic 40.0%
CATCTGGATGTTCCTTTCTT+TGG + chr7_2:19634525-19634544 Msa1051880:intron 40.0%
! ATGTTCCTTTCTTTGGAGAG+TGG + chr7_2:19634532-19634551 Msa1051880:intron 40.0%
ATAGACCACTCTCCAAAGAA+AGG - chr7_2:19634540-19634559 None:intergenic 40.0%
TGGTCTATGCACTCTTTGAT+GGG + chr7_2:19634552-19634571 Msa1051880:intron 40.0%
CGGGTTCTATACATATTGCT+TGG - chr7_2:19634581-19634600 None:intergenic 40.0%
! TCTGGTGCTAAACGGAATAA+GGG - chr7_2:19634815-19634834 None:intergenic 40.0%
! TTCTGGTGCTAAACGGAATA+AGG - chr7_2:19634816-19634835 None:intergenic 40.0%
TTAAACGTCATCCCATCAGA+CGG - chr7_2:19634856-19634875 None:intergenic 40.0%
CTTTCTAAATGGACCGTGAT+GGG - chr7_2:19634934-19634953 None:intergenic 40.0%
TCTTTCTAAATGGACCGTGA+TGG - chr7_2:19634935-19634954 None:intergenic 40.0%
TAATCCAACAATCTCCCACT+TGG + chr7_2:19635077-19635096 Msa1051880:intron 40.0%
AAATCCCTTAGGAGTTCCAA+AGG + chr7_2:19636473-19636492 Msa1051880:intron 40.0%
ATTTCAGACTTCCTCAAAGG+AGG - chr7_2:19636805-19636824 None:intergenic 40.0%
! GTACTATGCTATGTTGGCTA+AGG + chr7_2:19636828-19636847 Msa1051880:CDS 40.0%
! TATGCTATGTTGGCTAAGGT+TGG + chr7_2:19636832-19636851 Msa1051880:CDS 40.0%
GTTGGAGTTCACCATTACAA+TGG + chr7_2:19636850-19636869 Msa1051880:CDS 40.0%
TCAGCTAGCTAGAATCAATC+AGG - chr7_2:19637002-19637021 None:intergenic 40.0%
! TGAGCTTTAGTGTGTATCAG+TGG + chr7_2:19637019-19637038 Msa1051880:intron 40.0%
AATGACACTACTGTACGACA+GGG - chr7_2:19637348-19637367 None:intergenic 40.0%
AAATGACACTACTGTACGAC+AGG - chr7_2:19637349-19637368 None:intergenic 40.0%
ATTTGATCTTACGCTGCTGT+TGG + chr7_2:19637413-19637432 Msa1051880:intron 40.0%
TTTGATCTTACGCTGCTGTT+GGG + chr7_2:19637414-19637433 Msa1051880:intron 40.0%
!! AGGAACTGTCTTGATGATGT+CGG - chr7_2:19638029-19638048 None:intergenic 40.0%
CTTTACGTTTACTGATCTCC+AGG - chr7_2:19638049-19638068 None:intergenic 40.0%
TACTCAATGCTCAATCAGCT+GGG - chr7_2:19638177-19638196 None:intergenic 40.0%
TTACTCAATGCTCAATCAGC+TGG - chr7_2:19638178-19638197 None:intergenic 40.0%
GATGCGCAGAGAAGAAAATG+CGG - chr7_2:19629029-19629048 None:intergenic 45.0%
CACCAAACCTTCAACAATGG+TGG + chr7_2:19629052-19629071 Msa1051880:exon 45.0%
GAAGCTTACGGTCTTCTTTG+CGG - chr7_2:19629078-19629097 None:intergenic 45.0%
!! CTCATGAGAGCATCAACAAC+AGG + chr7_2:19629196-19629215 Msa1051880:CDS 45.0%
!! AAGTCGCTGGAATTGGTTTG+TGG - chr7_2:19629667-19629686 None:intergenic 45.0%
!! ATTAGCTTGGCTTGCTGACT+AGG - chr7_2:19630550-19630569 None:intergenic 45.0%
! CGATTCTAGTTACACCAGAG+TGG + chr7_2:19630878-19630897 Msa1051880:intron 45.0%
! TTCTAGTTACACCAGAGTGG+TGG + chr7_2:19630881-19630900 Msa1051880:intron 45.0%
! GTCTTGTTAACGAGTGCTTC+TGG + chr7_2:19631052-19631071 Msa1051880:intron 45.0%
CTTGTTAACGAGTGCTTCTG+GGG + chr7_2:19631054-19631073 Msa1051880:intron 45.0%
!! AGATCTTAAAGAGTACCCCG+GGG + chr7_2:19631182-19631201 Msa1051880:intron 45.0%
! GTGTTGGTCCCTCCTTATTA+AGG + chr7_2:19631926-19631945 Msa1051880:intron 45.0%
GTTGGTCCCTCCTTATTAAG+GGG + chr7_2:19631928-19631947 Msa1051880:intron 45.0%
ACATTTCCAGGGTGAAAAGG+GGG - chr7_2:19632141-19632160 None:intergenic 45.0%
CACATTTCCAGGGTGAAAAG+GGG - chr7_2:19632142-19632161 None:intergenic 45.0%
! CTCTTTTCTCTCATGTGTGC+AGG - chr7_2:19632314-19632333 None:intergenic 45.0%
AACCTAACTGCGTTTCCAAG+AGG + chr7_2:19632916-19632935 Msa1051880:intron 45.0%
TTATTTCACCGTGAGCCTCT+TGG - chr7_2:19632934-19632953 None:intergenic 45.0%
GTGGTTAGAGCTATAGGAGT+CGG + chr7_2:19633277-19633296 Msa1051880:intron 45.0%
GATCTCGAGTGAATATCTGG+TGG + chr7_2:19633513-19633532 Msa1051880:intron 45.0%
GAGCCTATTAGCCCTTTAGA+AGG + chr7_2:19633896-19633915 Msa1051880:intron 45.0%
! GGGATTTGTTCTCTTACCAG+GGG + chr7_2:19634017-19634036 Msa1051880:intron 45.0%
ATTTGTTCTCTTACCAGGGG+CGG + chr7_2:19634020-19634039 Msa1051880:intron 45.0%
! ATAAAAACTAGGGGGTGCAG+TGG - chr7_2:19634068-19634087 None:intergenic 45.0%
CTAATTCACTGTCGTTGCAG+CGG + chr7_2:19634117-19634136 Msa1051880:intron 45.0%
TTGCCATGATTCATGCAAGG+GGG - chr7_2:19634277-19634296 None:intergenic 45.0%
TGGCAATATTACCACCACAC+CGG + chr7_2:19634291-19634310 Msa1051880:intron 45.0%
TACATGATTGTGAACCGGTG+TGG - chr7_2:19634308-19634327 None:intergenic 45.0%
CTTCAAATATTTGGCACCCC+CGG + chr7_2:19634356-19634375 Msa1051880:intron 45.0%
GGTCTTCCCAATAATTGCCT+TGG + chr7_2:19634412-19634431 Msa1051880:intron 45.0%
!! CCTTCTATGGATTTTGGCCA+AGG - chr7_2:19634432-19634451 None:intergenic 45.0%
CCTTGGCCAAAATCCATAGA+AGG + chr7_2:19634429-19634448 Msa1051880:intron 45.0%
ATCAGGACACTCACCTTCTA+TGG - chr7_2:19634445-19634464 None:intergenic 45.0%
GATTGGACATCACATAGGGA+AGG + chr7_2:19634489-19634508 Msa1051880:intron 45.0%
GTGGTCTATGCACTCTTTGA+TGG + chr7_2:19634551-19634570 Msa1051880:intron 45.0%
GGTCTATGCACTCTTTGATG+GGG + chr7_2:19634553-19634572 Msa1051880:intron 45.0%
TGTATAGAACCCGAGTGTCA+AGG + chr7_2:19634588-19634607 Msa1051880:intron 45.0%
ACCTTATCAGCCTTGACACT+CGG - chr7_2:19634601-19634620 None:intergenic 45.0%
TGTCAAGGCTGATAAGGTGA+AGG + chr7_2:19634603-19634622 Msa1051880:intron 45.0%
ATAAGGTGAAGGCTCTCTGA+GGG + chr7_2:19634614-19634633 Msa1051880:intron 45.0%
GATGAAGGATAACCGTCAGA+AGG + chr7_2:19634773-19634792 Msa1051880:intron 45.0%
ATAACCGTCAGAAGGATGAG+AGG + chr7_2:19634781-19634800 Msa1051880:intron 45.0%
TAACCGTCAGAAGGATGAGA+GGG + chr7_2:19634782-19634801 Msa1051880:intron 45.0%
CTAAATGGTCCAACCCATCA+CGG + chr7_2:19634918-19634937 Msa1051880:intron 45.0%
TCATCCAAGTGGGAGATTGT+TGG - chr7_2:19635084-19635103 None:intergenic 45.0%
CTAACAACTGTCCTCCTTTG+AGG + chr7_2:19636791-19636810 Msa1051880:CDS 45.0%
TACCAGGATCAACAATGCTG+AGG - chr7_2:19637916-19637935 None:intergenic 45.0%
GACATCATCAAGACAGTTCC+TGG + chr7_2:19638028-19638047 Msa1051880:CDS 45.0%
!!! TAATTTTAAAATTATATGTA+TGG + chr7_2:19635156-19635175 Msa1051880:intron 5.0%
GGCCACCATTGTTGAAGGTT+TGG - chr7_2:19629057-19629076 None:intergenic 50.0%
TTTGCGGCCACCATTGTTGA+AGG - chr7_2:19629062-19629081 None:intergenic 50.0%
CTCGCTCTTGTCATGAAGAG+TGG + chr7_2:19629219-19629238 Msa1051880:intron 50.0%
!! TCGTCTGGTGGTGTTGACAT+GGG - chr7_2:19629775-19629794 None:intergenic 50.0%
!! TTCGTCTGGTGGTGTTGACA+TGG - chr7_2:19629776-19629795 None:intergenic 50.0%
TTGGTTCAAACCCGAGCAAG+AGG - chr7_2:19629877-19629896 None:intergenic 50.0%
!! GATCTTAAAGAGTACCCCGG+GGG + chr7_2:19631183-19631202 Msa1051880:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr7_2:19631201-19631220 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr7_2:19631202-19631221 None:intergenic 50.0%
TAGGCGCCCCTTAATAAGGA+GGG - chr7_2:19631937-19631956 None:intergenic 50.0%
GTGGAGGACATTACCTAGCT+AGG + chr7_2:19632816-19632835 Msa1051880:intron 50.0%
AGCCTCTTGGAAACGCAGTT+AGG - chr7_2:19632921-19632940 None:intergenic 50.0%
!! AATGGATGGGTTGGCTCTTG+TGG - chr7_2:19633981-19634000 None:intergenic 50.0%
TGCCATGATTCATGCAAGGG+GGG - chr7_2:19634276-19634295 None:intergenic 50.0%
ATGATTGTGAACCGGTGTGG+TGG - chr7_2:19634305-19634324 None:intergenic 50.0%
AGATCCGCCACTGTCTCTTA+CGG + chr7_2:19634391-19634410 Msa1051880:intron 50.0%
AAGACCGTAAGAGACAGTGG+CGG - chr7_2:19634398-19634417 None:intergenic 50.0%
CATCACATAGGGAAGGAGAC+TGG + chr7_2:19634496-19634515 Msa1051880:intron 50.0%
CCTTATCAGCCTTGACACTC+GGG - chr7_2:19634600-19634619 None:intergenic 50.0%
GATAAGGTGAAGGCTCTCTG+AGG + chr7_2:19634613-19634632 Msa1051880:intron 50.0%
CATCCCTCTCATCCTTCTGA+CGG - chr7_2:19634788-19634807 None:intergenic 50.0%
ATAGCTAAACGACTGAGGGC+AGG + chr7_2:19634876-19634895 Msa1051880:intron 50.0%
TAGCTAAACGACTGAGGGCA+GGG + chr7_2:19634877-19634896 Msa1051880:intron 50.0%
!! CTAAATGGACCGTGATGGGT+TGG - chr7_2:19634930-19634949 None:intergenic 50.0%
TATGTATCCCGTGCGATGCA+CGG + chr7_2:19636164-19636183 Msa1051880:intron 50.0%
AATCGTAACCGTGCATCGCA+CGG - chr7_2:19636175-19636194 None:intergenic 50.0%
ACTTTCCACAAGCAGTGCCA+AGG - chr7_2:19637877-19637896 None:intergenic 50.0%
TGCCTCAGCATTGTTGATCC+TGG + chr7_2:19637911-19637930 Msa1051880:CDS 50.0%
TAAGGATGCTGCCACCACTC+TGG - chr7_2:19630895-19630914 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr7_2:19631200-19631219 None:intergenic 55.0%
GTAGGCGCCCCTTAATAAGG+AGG - chr7_2:19631938-19631957 None:intergenic 55.0%
AGGGTAGGCGCCCCTTAATA+AGG - chr7_2:19631941-19631960 None:intergenic 55.0%
TGTGTGCAGGAGCCAAACAG+TGG - chr7_2:19632301-19632320 None:intergenic 55.0%
CTGCGTTTCCAAGAGGCTCA+CGG + chr7_2:19632923-19632942 Msa1051880:intron 55.0%
CTGTCGTTGCAGCGGTTAAG+CGG + chr7_2:19634125-19634144 Msa1051880:intron 55.0%
GCGACCTTTAACAGAGTGGG+GGG - chr7_2:19634152-19634171 None:intergenic 55.0%
CGCGACCTTTAACAGAGTGG+GGG - chr7_2:19634153-19634172 None:intergenic 55.0%
GCGCGACCTTTAACAGAGTG+GGG - chr7_2:19634154-19634173 None:intergenic 55.0%
CGCGCGACCTTTAACAGAGT+GGG - chr7_2:19634155-19634174 None:intergenic 55.0%
ACGCGCGACCTTTAACAGAG+TGG - chr7_2:19634156-19634175 None:intergenic 55.0%
!! GGTTGGTTCGAATCCCACCA+GGG - chr7_2:19634253-19634272 None:intergenic 55.0%
CCATGATTCATGCAAGGGGG+GGG - chr7_2:19634274-19634293 None:intergenic 55.0%
GCCATGATTCATGCAAGGGG+GGG - chr7_2:19634275-19634294 None:intergenic 55.0%
GGGAAGACCGTAAGAGACAG+TGG - chr7_2:19634401-19634420 None:intergenic 55.0%
CCCGAGTGTCAAGGCTGATA+AGG + chr7_2:19634597-19634616 Msa1051880:intron 55.0%
ATCGTAACCGTGCATCGCAC+GGG - chr7_2:19636174-19636193 None:intergenic 55.0%
GTTGACCTTGGCACTGCTTG+TGG + chr7_2:19637869-19637888 Msa1051880:CDS 55.0%
! AGTTGGCCCCCTTTTCACCC+TGG + chr7_2:19632132-19632151 Msa1051880:intron 60.0%
! TCTCTGAAGAGATCCGCCCC+TGG - chr7_2:19634036-19634055 None:intergenic 60.0%
CGGATCTCTTCAGAGACCCC+AGG + chr7_2:19634040-19634059 Msa1051880:intron 60.0%
CGGTCCCCCCACTCTGTTAA+AGG + chr7_2:19634145-19634164 Msa1051880:intron 60.0%
!! GGGTTGGTTCGAATCCCACC+AGG - chr7_2:19634254-19634273 None:intergenic 60.0%
GATTCATGCAAGGGGGGGGT+TGG - chr7_2:19634270-19634289 None:intergenic 60.0%
CCCCCCCCTTGCATGAATCA+TGG + chr7_2:19634271-19634290 Msa1051880:intron 60.0%
!! AGGAGACTGGTCTGCCCATC+TGG + chr7_2:19634509-19634528 Msa1051880:intron 60.0%
GAGGGCAGGGACCTCTCATT+AGG + chr7_2:19634890-19634909 Msa1051880:intron 60.0%
! TAGGGGGTGCAGTGGCACCT+GGG - chr7_2:19634060-19634079 None:intergenic 65.0%
AAGGTCGCGCGTTCGATCCC+TGG + chr7_2:19634164-19634183 Msa1051880:intron 65.0%
! AGGGGGTGCAGTGGCACCTG+GGG - chr7_2:19634059-19634078 None:intergenic 70.0%
! CTAGGGGGTGCAGTGGCACC+TGG - chr7_2:19634061-19634080 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 19628995 19638370 19628995 ID=Msa1051880;Name=Msa1051880
chr7_2 mRNA 19628995 19638370 19628995 ID=Msa1051880-mRNA-1;Parent=Msa1051880;Name=Msa1051880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=73|0.75|0.8|1|0.75|0.8|5|310|93
chr7_2 exon 19628995 19629088 19628995 ID=Msa1051880-mRNA-1:exon:4321;Parent=Msa1051880-mRNA-1
chr7_2 exon 19629189 19629237 19629189 ID=Msa1051880-mRNA-1:exon:4322;Parent=Msa1051880-mRNA-1
chr7_2 exon 19636773 19636874 19636773 ID=Msa1051880-mRNA-1:exon:4323;Parent=Msa1051880-mRNA-1
chr7_2 exon 19637864 19637932 19637864 ID=Msa1051880-mRNA-1:exon:4324;Parent=Msa1051880-mRNA-1
chr7_2 exon 19638020 19638370 19638020 ID=Msa1051880-mRNA-1:exon:4325;Parent=Msa1051880-mRNA-1
chr7_2 five_prime_UTR 19628995 19629067 19628995 ID=Msa1051880-mRNA-1:five_prime_utr;Parent=Msa1051880-mRNA-1
chr7_2 CDS 19629068 19629088 19629068 ID=Msa1051880-mRNA-1:cds;Parent=Msa1051880-mRNA-1
chr7_2 CDS 19629189 19629237 19629189 ID=Msa1051880-mRNA-1:cds;Parent=Msa1051880-mRNA-1
chr7_2 CDS 19636773 19636874 19636773 ID=Msa1051880-mRNA-1:cds;Parent=Msa1051880-mRNA-1
chr7_2 CDS 19637864 19637932 19637864 ID=Msa1051880-mRNA-1:cds;Parent=Msa1051880-mRNA-1
chr7_2 CDS 19638020 19638060 19638020 ID=Msa1051880-mRNA-1:cds;Parent=Msa1051880-mRNA-1
chr7_2 three_prime_UTR 19638061 19638370 19638061 ID=Msa1051880-mRNA-1:three_prime_utr;Parent=Msa1051880-mRNA-1
Gene Sequence

>Msa1051880

ATGGTGGCCGCAAAGAAGACCAAGAAGACTCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGGAAATTGATTATCATTGCTAACAACTGTCCTCCTTTGAGGAAGTCTGAAATTGAGTACTATGCTATGTTGGCTAAGGTTGGAGTTCACCATTACAATGGAAACAATGTTGACCTTGGCACTGCTTGTGGAAAGTACTACAGAGTGTGCTGCCTCAGCATTGTTGATCCTGGTGATTCCGACATCATCAAGACAGTTCCTGGAGATCAGTAA

Protein sequence

>Msa1051880

MVAAKKTKKTHESINNRLALVMKRKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTVPGDQ*