AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044330 MtrunA17_Chr1g0210871 95.255 569 27 0 1 569 1 569 0.0 1137
Msa0044330 MtrunA17_Chr5g0412301 75.648 579 132 4 1 578 1 571 0.0 891
Msa0044330 MtrunA17_Chr7g0217951 50.000 458 201 5 1 455 1 433 1.79e-142 420
Msa0044330 MtrunA17_Chr5g0410781 50.909 220 106 1 238 455 27 246 6.21e-75 239
Msa0044330 MtrunA17_Chr3g0117631 30.499 341 182 10 223 555 9 302 2.05e-41 152
Msa0044330 MtrunA17_Chr4g0059061 31.667 300 160 8 273 567 46 305 3.91e-41 151
Msa0044330 MtrunA17_Chr8g0380321 28.814 295 157 8 277 559 26 279 1.63e-32 126
Msa0044330 MtrunA17_Chr2g0323961 59.722 72 29 0 90 161 1 72 1.19e-26 106
Msa0044330 MtrunA17_Chr2g0323961 37.333 150 48 2 278 425 72 177 9.60e-23 95.5
Msa0044330 MtrunA17_Chr7g0238751 40.625 96 55 1 239 332 28 123 4.04e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044330 AT1G32230.3 42.694 527 271 11 51 562 55 565 7.09e-134 402
Msa0044330 AT1G32230.6 42.694 527 271 11 51 562 55 565 1.85e-133 402
Msa0044330 AT1G32230.4 42.694 527 271 11 51 562 55 565 1.85e-133 402
Msa0044330 AT1G32230.2 42.694 527 271 11 51 562 55 565 1.85e-133 402
Msa0044330 AT1G32230.5 42.694 527 271 11 51 562 55 565 1.85e-133 402
Msa0044330 AT1G32230.1 42.614 528 271 11 51 562 55 566 2.61e-133 401
Msa0044330 AT2G35510.1 38.870 584 314 13 1 562 1 563 3.78e-120 367
Msa0044330 AT2G35510.3 38.870 584 314 13 1 562 1 563 3.78e-120 367
Msa0044330 AT2G35510.2 40.173 463 257 9 1 455 1 451 3.25e-106 327
Msa0044330 AT1G23550.1 31.142 289 155 6 275 555 56 308 2.43e-40 149
Msa0044330 AT1G70440.2 27.761 335 191 7 236 559 6 300 7.50e-37 139
Msa0044330 AT1G70440.1 27.761 335 191 7 236 559 6 300 7.50e-37 139
Msa0044330 AT5G62520.1 26.190 252 138 4 308 555 89 296 4.34e-26 109
Msa0044330 AT5G62520.2 32.877 146 89 3 308 449 89 229 2.08e-21 94.0
Msa0044330 AT3G47720.1 24.723 271 142 7 305 564 91 310 4.81e-20 91.7

Find 136 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGAACATGCTTAA+AGG 0.183373 1_1:+75864409 None:intergenic
CAATATTCACAGATTCATTT+TGG 0.183660 1_1:+75861945 None:intergenic
TATTGCGATGTTGACGAAAA+TGG 0.184170 1_1:-75863498 Msa0044330:CDS
TCGGAAGCAGCATAAATTTC+AGG 0.217736 1_1:+75864584 None:intergenic
AATGAAATTAAATTACATTT+AGG 0.218634 1_1:-75864494 Msa0044330:CDS
CATTTAGGAGTTGAAATAAA+TGG 0.220622 1_1:-75864479 Msa0044330:CDS
TGTATTTAGATATTCCTTAA+TGG 0.224199 1_1:-75861752 Msa0044330:three_prime_UTR
CTGTGAATATTGTTAGTTCT+TGG 0.239953 1_1:-75861934 Msa0044330:three_prime_UTR
ACAATAGTTAAATCTTAAAT+AGG 0.244234 1_1:-75861790 Msa0044330:three_prime_UTR
TTCAAAATCATTATGATTGC+AGG 0.266216 1_1:+75864376 None:intergenic
TTTGATCACACAAGATGATT+TGG 0.289503 1_1:+75862056 None:intergenic
GCATATAATGAAATTGTATA+TGG 0.291709 1_1:-75864275 Msa0044330:CDS
TTGAAACTAATAACAAATTC+TGG 0.295864 1_1:+75863306 None:intergenic
TCCACAGGATGCTGTTGATT+TGG 0.304882 1_1:-75864762 Msa0044330:CDS
TGATAGACCATCAAACGTTC+TGG 0.312618 1_1:+75864806 None:intergenic
ATCATCTTGTGTGATCAAAA+TGG 0.313574 1_1:-75862052 Msa0044330:CDS
TGTATATGGAAAGTTGGATT+TGG 0.313935 1_1:-75864261 Msa0044330:CDS
CCGTGTAATAATGGGGAATA+TGG 0.323010 1_1:-75863454 Msa0044330:CDS
TGTGCAAAAGATGTTTCTTA+AGG 0.323221 1_1:-75864234 Msa0044330:CDS
AAATGTAATTTAATTTCATT+AGG 0.344899 1_1:+75864497 None:intergenic
TGTTTGACAACCTTGTTTCT+TGG 0.346772 1_1:+75864929 None:intergenic
ATATGTACCATCTGCACTTC+AGG 0.348991 1_1:-75862477 Msa0044330:CDS
GTGCAAAAGATGTTTCTTAA+GGG 0.359591 1_1:-75864233 Msa0044330:CDS
CCTTTACACTTCAAACTTTG+CGG 0.363885 1_1:-75861992 Msa0044330:three_prime_UTR
TATCAGATGAATTTGAAATC+TGG 0.365305 1_1:-75864656 Msa0044330:CDS
ATATGACTCTCTGATTTCAT+TGG 0.368978 1_1:+75864878 None:intergenic
CGAGGGGATGTTGAAGCTTC+AGG 0.375057 1_1:+75862568 None:intergenic
AGAATTTGTTATTAGTTTCA+AGG 0.376305 1_1:-75863304 Msa0044330:CDS
CTTAAGGGAACTGGTAGTTT+TGG 0.384074 1_1:-75864218 Msa0044330:CDS
TGTGAATATTGTTAGTTCTT+GGG 0.387596 1_1:-75861933 Msa0044330:three_prime_UTR
TGAAATTGTATATGGAAAGT+TGG 0.390031 1_1:-75864267 Msa0044330:CDS
CGTTTGATGGTCTATCAAAA+TGG 0.393202 1_1:-75864800 Msa0044330:CDS
ATTGCGATGTTGACGAAAAT+GGG 0.394816 1_1:-75863497 Msa0044330:CDS
CATAGTAGGTAACTCTCCTT+TGG 0.401981 1_1:+75864058 None:intergenic
GGAGTAGGTGCATCCAAGTT+GGG 0.410633 1_1:-75864458 Msa0044330:CDS
ACAACGGAAAGGCGTCTAAC+AGG 0.411555 1_1:-75865051 Msa0044330:CDS
ATGAAATCAGAGAGTCATAT+TGG 0.412100 1_1:-75864875 Msa0044330:CDS
GTTGAGCAAAATAAAAGTAT+AGG 0.412784 1_1:-75864305 Msa0044330:CDS
AGCAGTAATAACATGGGAAA+TGG 0.415932 1_1:-75864344 Msa0044330:CDS
AAGATGTTTCTTAAGGGAAC+TGG 0.416920 1_1:-75864227 Msa0044330:CDS
GCCTTATGATCTCTGCAATC+AGG 0.430030 1_1:-75864555 Msa0044330:CDS
GATAGACCATCAAACGTTCT+GGG 0.444240 1_1:+75864807 None:intergenic
TCCTGATTGCAGAGATCATA+AGG 0.444505 1_1:+75864554 None:intergenic
TACCTACTATGATGAATTGT+GGG 0.444859 1_1:-75864046 Msa0044330:CDS
TACATCGGTGCAGTCGCGAT+TGG 0.445376 1_1:-75864159 Msa0044330:CDS
ATTTAATTTCATTAGGACCT+TGG 0.447429 1_1:+75864504 None:intergenic
ATTTATGCTGCTTCCGATGA+AGG 0.448045 1_1:-75864578 Msa0044330:CDS
TTAAGATTTAACTATTGTGC+TGG 0.452841 1_1:+75861795 None:intergenic
GTTTGCAACAACCTATTGCT+TGG 0.460581 1_1:-75864634 Msa0044330:CDS
AGGATGCTGTTGATTTGGTT+AGG 0.460743 1_1:-75864757 Msa0044330:CDS
TGAAGTGCAGATGGTACATA+TGG 0.467187 1_1:+75862479 None:intergenic
CCGCAAAGTTTGAAGTGTAA+AGG 0.468426 1_1:+75861992 None:intergenic
CGGAAGCCCAGAACGTTTGA+TGG 0.469515 1_1:-75864813 Msa0044330:CDS
TAGAAATTCAACCTGGCAAA+AGG 0.470103 1_1:+75863951 None:intergenic
TGCAATCAGGACAGCAGAAA+AGG 0.471869 1_1:-75864542 Msa0044330:CDS
GTCAAACATATGAGATTGAA+AGG 0.473888 1_1:-75864914 Msa0044330:CDS
GTCTCATCAATCCAAGCAAT+AGG 0.480763 1_1:+75864623 None:intergenic
CTCTTGCGAGCTACATTACC+TGG 0.482989 1_1:-75862302 Msa0044330:CDS
ATATTGGACGATCGTTGGTT+AGG 0.486121 1_1:-75864859 Msa0044330:CDS
ACTATCATAGTCACTACTAC+TGG 0.487570 1_1:+75863398 None:intergenic
ATGCTAATGTTCGATATGCT+TGG 0.490597 1_1:-75864091 Msa0044330:CDS
CGGAAGCAGCATAAATTTCA+GGG 0.494199 1_1:+75864585 None:intergenic
AGTAGTAGTGACTATGATAG+TGG 0.498552 1_1:-75863396 Msa0044330:CDS
AATATGGAGCTTCTCCATCC+TGG 0.503567 1_1:-75863438 Msa0044330:CDS
GCTTGGCTTGCTTCTTCCAA+AGG 0.505689 1_1:-75864074 Msa0044330:CDS
TGGAGTAGGTGCATCCAAGT+TGG 0.506701 1_1:-75864459 Msa0044330:CDS
TCAAAACAAAATTTAAAAGC+AGG 0.510392 1_1:+75861903 None:intergenic
ATACCTCAGGGAATTCCAAC+TGG 0.510962 1_1:-75862595 Msa0044330:intron
TATGTACCATCTGCACTTCA+GGG 0.512959 1_1:-75862476 Msa0044330:intron
GCTGTGGAGGTAGAGTTAAA+TGG 0.513139 1_1:-75864710 Msa0044330:CDS
AACATGGGAAATGGAAGTGT+TGG 0.515790 1_1:-75864335 Msa0044330:CDS
GGAGTTGAAATAAATGGAGT+AGG 0.517207 1_1:-75864473 Msa0044330:CDS
AACATGCTTAAAGGTGACAT+TGG 0.523449 1_1:+75864418 None:intergenic
GGTCATGAATCTTTGTTCCA+AGG 0.527808 1_1:-75864521 Msa0044330:CDS
AAAAGTCCAGCACAAGATGA+TGG 0.528460 1_1:+75864687 None:intergenic
TCCACTCACATCCCAAAAGA+AGG 0.531626 1_1:+75862934 None:intergenic
TAACAAATTCTGGATAGATG+TGG 0.531780 1_1:+75863316 None:intergenic
GGGGTTAATTCAGCTAGCCA+TGG 0.534332 1_1:-75862897 Msa0044330:CDS
ACTATGATGAATTGTGGGCT+TGG 0.536837 1_1:-75864041 Msa0044330:CDS
ATTCAACCTGGCAAAAGGAC+AGG 0.542093 1_1:+75863956 None:intergenic
ATAAGTTTCATATCCTCTGC+AGG 0.543701 1_1:+75862502 None:intergenic
GATGTACATTGAGGTAATAC+TGG 0.544556 1_1:+75864962 None:intergenic
CTATCAAAATGGTGGATGGA+AGG 0.546660 1_1:-75864789 Msa0044330:CDS
GTAGTAGTGACTATGATAGT+GGG 0.547301 1_1:-75863395 Msa0044330:CDS
GGACGGTACTGTCTAGTGCC+AGG 0.550759 1_1:+75863420 None:intergenic
AACAAATTCTGGATAGATGT+GGG 0.554025 1_1:+75863317 None:intergenic
AAATGGCCATCATCTTGTGC+TGG 0.555550 1_1:-75864693 Msa0044330:CDS
CTATCATAGTCACTACTACT+GGG 0.559417 1_1:+75863399 None:intergenic
CTGCACCGATGTACTTGAGA+AGG 0.562181 1_1:+75864169 None:intergenic
GAGTAGGTGCATCCAAGTTG+GGG 0.564548 1_1:-75864457 Msa0044330:CDS
AGCCCACAATTCATCATAGT+AGG 0.565165 1_1:+75864044 None:intergenic
TTTATGCTGCTTCCGATGAA+GGG 0.565221 1_1:-75864577 Msa0044330:CDS
TTACCTACTATGATGAATTG+TGG 0.569110 1_1:-75864047 Msa0044330:CDS
AAGGTCTCTTCTGATGCTGA+AGG 0.569414 1_1:-75863285 Msa0044330:intron
ATTGCTTGGATTGATGAGAC+AGG 0.571658 1_1:-75864620 Msa0044330:CDS
TGAAGATAGCAGTAATAACA+TGG 0.572879 1_1:-75864351 Msa0044330:CDS
CGTTCAGAGTCTTCGAGAGT+AGG 0.575834 1_1:-75862858 Msa0044330:CDS
TCTAAATGCATGCATGGCAT+TGG 0.576632 1_1:-75863999 Msa0044330:CDS
TGCACCGATGTACTTGAGAA+GGG 0.577902 1_1:+75864170 None:intergenic
ACCTTGTGTTGAAGAAGACC+AGG 0.580336 1_1:+75862284 None:intergenic
CATAAACAAGGTTCCTGCAG+AGG 0.585357 1_1:-75862515 Msa0044330:CDS
CCATATTCCCCATTATTACA+CGG 0.586757 1_1:+75863454 None:intergenic
TCTGCATCTAAATGCATGCA+TGG 0.588450 1_1:-75864005 Msa0044330:CDS
CTGAAGCTTCAACATCCCCT+CGG 0.589448 1_1:-75862567 Msa0044330:CDS
GGTACTGTCTAGTGCCAGGA+TGG 0.592202 1_1:+75863424 None:intergenic
TCAAACATATGAGATTGAAA+GGG 0.594105 1_1:-75864913 Msa0044330:CDS
TACATACCCTGAAGTGCAGA+TGG 0.595712 1_1:+75862470 None:intergenic
GAGATCATAAGGCCCTTCAT+CGG 0.599029 1_1:+75864565 None:intergenic
GAAGCTTCAGGCGAACCAGT+TGG 0.600300 1_1:+75862580 None:intergenic
TGAAGTGACAGATTAATTTG+AGG 0.605937 1_1:+75861721 None:intergenic
TGGTCTATCAAAATGGTGGA+TGG 0.608244 1_1:-75864793 Msa0044330:CDS
TATATGAATTATAAGAAGAG+CGG 0.609096 1_1:-75864833 Msa0044330:CDS
TGATGTAAAGAAAGCAGCTG+TGG 0.610026 1_1:-75864726 Msa0044330:CDS
GAGTCATATTGGACGATCGT+TGG 0.611529 1_1:-75864864 Msa0044330:CDS
ACCTGGTCTTCTTCAACACA+AGG 0.612227 1_1:-75862285 Msa0044330:intron
TTGCGATGTTGACGAAAATG+GGG 0.614839 1_1:-75863496 Msa0044330:CDS
ACTAATAACACCAAGAAACA+AGG 0.615567 1_1:-75864939 Msa0044330:CDS
GGAATGTGCTTAATCTGAAG+CGG 0.619402 1_1:-75865030 Msa0044330:CDS
TGTAAAGAAAGCAGCTGTGG+AGG 0.623964 1_1:-75864723 Msa0044330:CDS
TGGATGGAAGGACTTTCCAC+AGG 0.627657 1_1:-75864777 Msa0044330:CDS
CATAGTCACTACTACTGGGA+CGG 0.629627 1_1:+75863403 None:intergenic
ACCAAATCAACAGCATCCTG+TGG 0.639973 1_1:+75864761 None:intergenic
GAAGATAGCAGTAATAACAT+GGG 0.640382 1_1:-75864350 Msa0044330:CDS
GTTATTAGTGATGTACATTG+AGG 0.640455 1_1:+75864953 None:intergenic
GCACCGATGTACTTGAGAAG+GGG 0.647364 1_1:+75864171 None:intergenic
TTACCCCTTCTCAAGTACAT+CGG 0.652782 1_1:-75864174 Msa0044330:CDS
TGCATGCATTTAGATGCAGA+TGG 0.653425 1_1:+75864008 None:intergenic
TTGCTTGGATTGATGAGACA+GGG 0.654779 1_1:-75864619 Msa0044330:CDS
CATGGAAGCAAACAACGGAA+AGG 0.655703 1_1:-75865062 Msa0044330:CDS
GTGATCAAAATGGAATCTTG+AGG 0.658713 1_1:-75862042 Msa0044330:exon
TAGTGACTATGATAGTGGGG+TGG 0.665276 1_1:-75863391 Msa0044330:CDS
TTGATGGTCTATCAAAATGG+TGG 0.667750 1_1:-75864797 Msa0044330:CDS
TAGTAGTGACTATGATAGTG+GGG 0.676289 1_1:-75863394 Msa0044330:CDS
ATAAACATGGAAGCAAACAA+CGG 0.703722 1_1:-75865067 None:intergenic
AGTAGGTGCATCCAAGTTGG+GGG 0.717707 1_1:-75864456 Msa0044330:CDS
ACTCTCGAAGACTCTGAACG+TGG 0.722742 1_1:+75862861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAATTTAATTTCATT+AGG + chr1_1:75862301-75862320 None:intergenic 10.0%
!! AATGAAATTAAATTACATTT+AGG - chr1_1:75862301-75862320 Msa0044330:CDS 10.0%
!! CCATTCTTAAATAAAATAAT+TGG + chr1_1:75862996-75863015 None:intergenic 15.0%
!!! CCAATTATTTTATTTAAGAA+TGG - chr1_1:75862993-75863012 Msa0044330:intron 15.0%
!! TAATATTATAGAACATTTCA+AGG + chr1_1:75863097-75863116 None:intergenic 15.0%
!!! TACATTTTCTTAACAAAAAA+AGG - chr1_1:75863575-75863594 Msa0044330:intron 15.0%
!! CTTATTATAATATTGGTATA+TGG - chr1_1:75863620-75863639 Msa0044330:intron 15.0%
!!! TTTTTTACTGTTTTTTTATC+TGG - chr1_1:75864102-75864121 Msa0044330:CDS 15.0%
!! ACAATAGTTAAATCTTAAAT+AGG - chr1_1:75865005-75865024 Msa0044330:CDS 15.0%
!! TATATGAATTATAAGAAGAG+CGG - chr1_1:75861962-75861981 Msa0044330:three_prime_UTR 20.0%
!!! TATACTTTTATTTTGCTCAA+CGG + chr1_1:75862491-75862510 None:intergenic 20.0%
!! GCATATAATGAAATTGTATA+TGG - chr1_1:75862520-75862539 Msa0044330:CDS 20.0%
!! ATAAATAAATAAGGGGAAAA+AGG + chr1_1:75863151-75863170 None:intergenic 20.0%
!! ACCGATGTATAAATAAATAA+GGG + chr1_1:75863159-75863178 None:intergenic 20.0%
!! TTGAAACTAATAACAAATTC+TGG + chr1_1:75863492-75863511 None:intergenic 20.0%
!!! AGAATTTGTTATTAGTTTCA+AGG - chr1_1:75863491-75863510 Msa0044330:CDS 20.0%
!! AAGAAAAAAATGGATAGAAT+AGG + chr1_1:75863603-75863622 None:intergenic 20.0%
!!! TAACTAGTTGATATATGATT+CGG - chr1_1:75863666-75863685 Msa0044330:intron 20.0%
!!! AGTGGAAGAATAATATTTTT+GGG - chr1_1:75863878-75863897 Msa0044330:intron 20.0%
!!! ATGATTTTTTGAAAAAGTTG+AGG - chr1_1:75864452-75864471 Msa0044330:CDS 20.0%
!! ATATGTCCTAATTGTTTAAA+TGG - chr1_1:75864699-75864718 Msa0044330:CDS 20.0%
!! TCAAAACAAAATTTAAAAGC+AGG + chr1_1:75864895-75864914 None:intergenic 20.0%
!!! AAATCTTAAATAGGCTTTTA+TGG - chr1_1:75865014-75865033 Msa0044330:CDS 20.0%
!! TGTATTTAGATATTCCTTAA+TGG - chr1_1:75865043-75865062 Msa0044330:CDS 20.0%
! TCAAACATATGAGATTGAAA+GGG - chr1_1:75861882-75861901 Msa0044330:three_prime_UTR 25.0%
!! TATCAGATGAATTTGAAATC+TGG - chr1_1:75862139-75862158 Msa0044330:intron 25.0%
!! ATTTAATTTCATTAGGACCT+TGG + chr1_1:75862294-75862313 None:intergenic 25.0%
! CATTTAGGAGTTGAAATAAA+TGG - chr1_1:75862316-75862335 Msa0044330:CDS 25.0%
! ATCAATTTGAACATGCTTAA+AGG + chr1_1:75862389-75862408 None:intergenic 25.0%
! TTCAAAATCATTATGATTGC+AGG + chr1_1:75862422-75862441 None:intergenic 25.0%
!! GTTGAGCAAAATAAAAGTAT+AGG - chr1_1:75862490-75862509 Msa0044330:CDS 25.0%
! TGAAATTGTATATGGAAAGT+TGG - chr1_1:75862528-75862547 Msa0044330:CDS 25.0%
! CTGAAATTACGAAAAATTGT+CGG - chr1_1:75862677-75862696 Msa0044330:intron 25.0%
! TGAAATTACGAAAAATTGTC+GGG - chr1_1:75862678-75862697 Msa0044330:intron 25.0%
!! ATAATTGGTCTAGAAATCAA+AGG + chr1_1:75862981-75863000 None:intergenic 25.0%
! CCGATGTATAAATAAATAAG+GGG + chr1_1:75863158-75863177 None:intergenic 25.0%
!! CCCCTTATTTATTTATACAT+CGG - chr1_1:75863155-75863174 Msa0044330:intron 25.0%
! CACCGATGTATAAATAAATA+AGG + chr1_1:75863160-75863179 None:intergenic 25.0%
! TTCTAGATTATTCGTTGTAA+TGG - chr1_1:75863234-75863253 Msa0044330:intron 25.0%
! TCTAGATTATTCGTTGTAAT+GGG - chr1_1:75863235-75863254 Msa0044330:intron 25.0%
! AATAACTAGCACTGTAAATA+AGG + chr1_1:75863281-75863300 None:intergenic 25.0%
!!! ATCCAAGAAACTTTTTAGTA+TGG - chr1_1:75863439-75863458 Msa0044330:CDS 25.0%
! TTCCATACTAAAAAGTTTCT+TGG + chr1_1:75863444-75863463 None:intergenic 25.0%
! TATTGGTATATGGTACTTAA+TGG - chr1_1:75863630-75863649 Msa0044330:intron 25.0%
! ATTGGTATATGGTACTTAAT+GGG - chr1_1:75863631-75863650 Msa0044330:intron 25.0%
!!! TATATCATGCGTTTTTTTAC+AGG - chr1_1:75863838-75863857 Msa0044330:intron 25.0%
!! GAGTGGAAGAATAATATTTT+TGG - chr1_1:75863877-75863896 Msa0044330:intron 25.0%
!!! GTGGAAGAATAATATTTTTG+GGG - chr1_1:75863879-75863898 Msa0044330:intron 25.0%
!!! TGTTTTTTTATCTGGAGTTT+TGG - chr1_1:75864110-75864129 Msa0044330:CDS 25.0%
!! TCCAATCAGTTTTTGAATTA+TGG - chr1_1:75864176-75864195 Msa0044330:CDS 25.0%
!! CCAATCAGTTTTTGAATTAT+GGG - chr1_1:75864177-75864196 Msa0044330:CDS 25.0%
!!! ATTGTTTTATGTTAATCACC+AGG - chr1_1:75864411-75864430 Msa0044330:CDS 25.0%
! ATGAAGCCATTTAAACAATT+AGG + chr1_1:75864708-75864727 None:intergenic 25.0%
!! CAATATTCACAGATTCATTT+TGG + chr1_1:75864853-75864872 None:intergenic 25.0%
!! TGTGAATATTGTTAGTTCTT+GGG - chr1_1:75864862-75864881 Msa0044330:CDS 25.0%
! TTAAGATTTAACTATTGTGC+TGG + chr1_1:75865003-75865022 None:intergenic 25.0%
GTTATTAGTGATGTACATTG+AGG + chr1_1:75861845-75861864 None:intergenic 30.0%
ACTAATAACACCAAGAAACA+AGG - chr1_1:75861856-75861875 Msa0044330:three_prime_UTR 30.0%
GTCAAACATATGAGATTGAA+AGG - chr1_1:75861881-75861900 Msa0044330:three_prime_UTR 30.0%
ATATGACTCTCTGATTTCAT+TGG + chr1_1:75861920-75861939 None:intergenic 30.0%
ATGAAATCAGAGAGTCATAT+TGG - chr1_1:75861920-75861939 Msa0044330:three_prime_UTR 30.0%
TGAAGATAGCAGTAATAACA+TGG - chr1_1:75862444-75862463 Msa0044330:intron 30.0%
GAAGATAGCAGTAATAACAT+GGG - chr1_1:75862445-75862464 Msa0044330:intron 30.0%
TGTATATGGAAAGTTGGATT+TGG - chr1_1:75862534-75862553 Msa0044330:CDS 30.0%
TGTGCAAAAGATGTTTCTTA+AGG - chr1_1:75862561-75862580 Msa0044330:CDS 30.0%
GTGCAAAAGATGTTTCTTAA+GGG - chr1_1:75862562-75862581 Msa0044330:CDS 30.0%
GAAATTACGAAAAATTGTCG+GGG - chr1_1:75862679-75862698 Msa0044330:intron 30.0%
AAATTACGAAAAATTGTCGG+GGG - chr1_1:75862680-75862699 Msa0044330:intron 30.0%
TTACCTACTATGATGAATTG+TGG - chr1_1:75862748-75862767 Msa0044330:intron 30.0%
TACCTACTATGATGAATTGT+GGG - chr1_1:75862749-75862768 Msa0044330:intron 30.0%
TGATGATTAGAAATTCAACC+TGG + chr1_1:75862854-75862873 None:intergenic 30.0%
TACTAATATATCTCTCTGCA+TGG - chr1_1:75863021-75863040 Msa0044330:intron 30.0%
! AATTTGATAGTTGTGTTGCA+TGG - chr1_1:75863119-75863138 Msa0044330:intron 30.0%
CTAAAAAGTTTCTTGGATTG+TGG + chr1_1:75863437-75863456 None:intergenic 30.0%
AACAAATTCTGGATAGATGT+GGG + chr1_1:75863481-75863500 None:intergenic 30.0%
TAACAAATTCTGGATAGATG+TGG + chr1_1:75863482-75863501 None:intergenic 30.0%
AAACAAGTTTCCAAAAGGAA+CGG + chr1_1:75863802-75863821 None:intergenic 30.0%
GAAAGAAACAAGTTTCCAAA+AGG + chr1_1:75863807-75863826 None:intergenic 30.0%
!!! TTTTTTTACAGGCCTTCTTT+TGG - chr1_1:75863849-75863868 Msa0044330:intron 30.0%
!!! TTTTTTACAGGCCTTCTTTT+GGG - chr1_1:75863850-75863869 Msa0044330:intron 30.0%
! GAAATTTGGTATTGGAACTT+GGG + chr1_1:75863996-75864015 None:intergenic 30.0%
TCACAAAGGAAATTTGGTAT+TGG + chr1_1:75864004-75864023 None:intergenic 30.0%
TACCAAATTTCCTTTGTGAA+AGG - chr1_1:75864005-75864024 Msa0044330:CDS 30.0%
CCCATAATTCAAAAACTGAT+TGG + chr1_1:75864180-75864199 None:intergenic 30.0%
! TTTTGCTGCTATCATAAACA+AGG - chr1_1:75864268-75864287 Msa0044330:CDS 30.0%
TTTGATCACACAAGATGATT+TGG + chr1_1:75864742-75864761 None:intergenic 30.0%
ATCATCTTGTGTGATCAAAA+TGG - chr1_1:75864743-75864762 Msa0044330:CDS 30.0%
!!! GAGGCTTACTTTATTTTGTA+CGG - chr1_1:75864772-75864791 Msa0044330:CDS 30.0%
!!! AGGCTTACTTTATTTTGTAC+GGG - chr1_1:75864773-75864792 Msa0044330:CDS 30.0%
! CTGTGAATATTGTTAGTTCT+TGG - chr1_1:75864861-75864880 Msa0044330:CDS 30.0%
GATGTACATTGAGGTAATAC+TGG + chr1_1:75861836-75861855 None:intergenic 35.0%
! TGTTTGACAACCTTGTTTCT+TGG + chr1_1:75861869-75861888 None:intergenic 35.0%
! CGTTTGATGGTCTATCAAAA+TGG - chr1_1:75861995-75862014 Msa0044330:three_prime_UTR 35.0%
! TTGATGGTCTATCAAAATGG+TGG - chr1_1:75861998-75862017 Msa0044330:three_prime_UTR 35.0%
GGAGTTGAAATAAATGGAGT+AGG - chr1_1:75862322-75862341 Msa0044330:CDS 35.0%
AACATGCTTAAAGGTGACAT+TGG + chr1_1:75862380-75862399 None:intergenic 35.0%
AGCAGTAATAACATGGGAAA+TGG - chr1_1:75862451-75862470 Msa0044330:intron 35.0%
AAGATGTTTCTTAAGGGAAC+TGG - chr1_1:75862568-75862587 Msa0044330:CDS 35.0%
AATTACGAAAAATTGTCGGG+GGG - chr1_1:75862681-75862700 Msa0044330:intron 35.0%
ATGCTAATGTTCGATATGCT+TGG - chr1_1:75862704-75862723 Msa0044330:intron 35.0%
TAGAAATTCAACCTGGCAAA+AGG + chr1_1:75862847-75862866 None:intergenic 35.0%
GCTTTAACACGACAAATTCT+AGG + chr1_1:75862929-75862948 None:intergenic 35.0%
TTGGTCTAGAAATCAAAGGA+AGG + chr1_1:75862977-75862996 None:intergenic 35.0%
AAATAAGGGGAAAAAGGTTC+TGG + chr1_1:75863145-75863164 None:intergenic 35.0%
!! TTCGTTGTAATGGGTAGAAA+AGG - chr1_1:75863244-75863263 Msa0044330:intron 35.0%
TATTGCGATGTTGACGAAAA+TGG - chr1_1:75863297-75863316 Msa0044330:CDS 35.0%
ATTGCGATGTTGACGAAAAT+GGG - chr1_1:75863298-75863317 Msa0044330:CDS 35.0%
! GTCTTTTGCCGTGTAATAAT+GGG - chr1_1:75863333-75863352 Msa0044330:CDS 35.0%
! TCTTTTGCCGTGTAATAATG+GGG - chr1_1:75863334-75863353 Msa0044330:CDS 35.0%
CCATATTCCCCATTATTACA+CGG + chr1_1:75863344-75863363 None:intergenic 35.0%
CTATCATAGTCACTACTACT+GGG + chr1_1:75863399-75863418 None:intergenic 35.0%
ACTATCATAGTCACTACTAC+TGG + chr1_1:75863400-75863419 None:intergenic 35.0%
AGTAGTAGTGACTATGATAG+TGG - chr1_1:75863399-75863418 Msa0044330:CDS 35.0%
GTAGTAGTGACTATGATAGT+GGG - chr1_1:75863400-75863419 Msa0044330:CDS 35.0%
! TAGTAGTGACTATGATAGTG+GGG - chr1_1:75863401-75863420 Msa0044330:CDS 35.0%
! GGAAATTTGGTATTGGAACT+TGG + chr1_1:75863997-75864016 None:intergenic 35.0%
TGCCTTTCACAAAGGAAATT+TGG + chr1_1:75864010-75864029 None:intergenic 35.0%
AAATACACTGCCTTTCACAA+AGG + chr1_1:75864018-75864037 None:intergenic 35.0%
TTTGAATTATGGGATACCTC+AGG - chr1_1:75864187-75864206 Msa0044330:CDS 35.0%
TTGAATTATGGGATACCTCA+GGG - chr1_1:75864188-75864207 Msa0044330:CDS 35.0%
ATAAGTTTCATATCCTCTGC+AGG + chr1_1:75864296-75864315 None:intergenic 35.0%
!! GTAATGTAAACTAGCTTTGC+TGG - chr1_1:75864345-75864364 Msa0044330:CDS 35.0%
GATATCAATTAAGACCGAGA+GGG + chr1_1:75864375-75864394 None:intergenic 35.0%
AGATATCAATTAAGACCGAG+AGG + chr1_1:75864376-75864395 None:intergenic 35.0%
AAAAAGTTGAGGTCAGTTGT+GGG - chr1_1:75864463-75864482 Msa0044330:CDS 35.0%
!! AACACAAGGTACTTTTCTCA+AGG - chr1_1:75864524-75864543 Msa0044330:CDS 35.0%
!!! AGGCTTTGATTTTTTCTGCA+AGG - chr1_1:75864544-75864563 Msa0044330:CDS 35.0%
TTAAATAGAGGGGGAAACTT+TGG + chr1_1:75864635-75864654 None:intergenic 35.0%
GTGATCAAAATGGAATCTTG+AGG - chr1_1:75864753-75864772 Msa0044330:CDS 35.0%
!!! GGCTTACTTTATTTTGTACG+GGG - chr1_1:75864774-75864793 Msa0044330:CDS 35.0%
!!! TTACTTTATTTTGTACGGGG+AGG - chr1_1:75864777-75864796 Msa0044330:CDS 35.0%
CCTTTACACTTCAAACTTTG+CGG - chr1_1:75864803-75864822 Msa0044330:CDS 35.0%
GTATGTTCCATGTCAAAAAC+AGG + chr1_1:75864924-75864943 None:intergenic 35.0%
TTGAGGTGCAAAAACCATTA+AGG + chr1_1:75865060-75865079 None:intergenic 35.0%
GGAATGTGCTTAATCTGAAG+CGG - chr1_1:75861765-75861784 Msa0044330:three_prime_UTR 40.0%
! ATATTGGACGATCGTTGGTT+AGG - chr1_1:75861936-75861955 Msa0044330:three_prime_UTR 40.0%
GATAGACCATCAAACGTTCT+GGG + chr1_1:75861991-75862010 None:intergenic 40.0%
TGATAGACCATCAAACGTTC+TGG + chr1_1:75861992-75862011 None:intergenic 40.0%
! TGGTCTATCAAAATGGTGGA+TGG - chr1_1:75862002-75862021 Msa0044330:three_prime_UTR 40.0%
!! CTATCAAAATGGTGGATGGA+AGG - chr1_1:75862006-75862025 Msa0044330:three_prime_UTR 40.0%
!! AGGATGCTGTTGATTTGGTT+AGG - chr1_1:75862038-75862057 Msa0044330:exon 40.0%
TGATGTAAAGAAAGCAGCTG+TGG - chr1_1:75862069-75862088 Msa0044330:intron 40.0%
AAAAGTCCAGCACAAGATGA+TGG + chr1_1:75862111-75862130 None:intergenic 40.0%
GTTTGCAACAACCTATTGCT+TGG - chr1_1:75862161-75862180 Msa0044330:intron 40.0%
GTCTCATCAATCCAAGCAAT+AGG + chr1_1:75862175-75862194 None:intergenic 40.0%
ATTGCTTGGATTGATGAGAC+AGG - chr1_1:75862175-75862194 Msa0044330:intron 40.0%
TTGCTTGGATTGATGAGACA+GGG - chr1_1:75862176-75862195 Msa0044330:intron 40.0%
CGGAAGCAGCATAAATTTCA+GGG + chr1_1:75862213-75862232 None:intergenic 40.0%
TCGGAAGCAGCATAAATTTC+AGG + chr1_1:75862214-75862233 None:intergenic 40.0%
! ATTTATGCTGCTTCCGATGA+AGG - chr1_1:75862217-75862236 Msa0044330:intron 40.0%
! TTTATGCTGCTTCCGATGAA+GGG - chr1_1:75862218-75862237 Msa0044330:intron 40.0%
TCCTGATTGCAGAGATCATA+AGG + chr1_1:75862244-75862263 None:intergenic 40.0%
GGTCATGAATCTTTGTTCCA+AGG - chr1_1:75862274-75862293 Msa0044330:intron 40.0%
! AACATGGGAAATGGAAGTGT+TGG - chr1_1:75862460-75862479 Msa0044330:intron 40.0%
! CTTAAGGGAACTGGTAGTTT+TGG - chr1_1:75862577-75862596 Msa0044330:CDS 40.0%
TTACCCCTTCTCAAGTACAT+CGG - chr1_1:75862621-75862640 Msa0044330:intron 40.0%
CATAGTAGGTAACTCTCCTT+TGG + chr1_1:75862740-75862759 None:intergenic 40.0%
AGCCCACAATTCATCATAGT+AGG + chr1_1:75862754-75862773 None:intergenic 40.0%
ACTATGATGAATTGTGGGCT+TGG - chr1_1:75862754-75862773 Msa0044330:intron 40.0%
TGCATGCATTTAGATGCAGA+TGG + chr1_1:75862790-75862809 None:intergenic 40.0%
TCTGCATCTAAATGCATGCA+TGG - chr1_1:75862790-75862809 Msa0044330:intron 40.0%
TCTAAATGCATGCATGGCAT+TGG - chr1_1:75862796-75862815 Msa0044330:intron 40.0%
TTGCGATGTTGACGAAAATG+GGG - chr1_1:75863299-75863318 Msa0044330:CDS 40.0%
! CGTCTTTTGCCGTGTAATAA+TGG - chr1_1:75863332-75863351 Msa0044330:CDS 40.0%
! CCGTGTAATAATGGGGAATA+TGG - chr1_1:75863341-75863360 Msa0044330:CDS 40.0%
!! GTACTTAATGGGTTGATCAG+AGG - chr1_1:75863642-75863661 Msa0044330:intron 40.0%
!! ATGATTCGGTTCACTCCATT+TGG - chr1_1:75863680-75863699 Msa0044330:intron 40.0%
GATGAAACCATCCATCCAAA+TGG + chr1_1:75863698-75863717 None:intergenic 40.0%
! GATGGTTTCATCTTCTGGTT+GGG - chr1_1:75863706-75863725 Msa0044330:intron 40.0%
! TCTGAACGTGGCAAGATTTT+AGG + chr1_1:75863925-75863944 None:intergenic 40.0%
! AGTAGGCACTGTAAGTTCTT+TGG - chr1_1:75863954-75863973 Msa0044330:intron 40.0%
! GCAGCAAAAAGCGTAGAAAA+AGG + chr1_1:75864257-75864276 None:intergenic 40.0%
TGAAGTGCAGATGGTACATA+TGG + chr1_1:75864319-75864338 None:intergenic 40.0%
ATATGTACCATCTGCACTTC+AGG - chr1_1:75864318-75864337 Msa0044330:CDS 40.0%
TATGTACCATCTGCACTTCA+GGG - chr1_1:75864319-75864338 Msa0044330:CDS 40.0%
GAAAAAGTTGAGGTCAGTTG+TGG - chr1_1:75864462-75864481 Msa0044330:CDS 40.0%
! AAACAGCAAGTATTGCCTCA+AGG + chr1_1:75864592-75864611 None:intergenic 40.0%
AGAGTCCAGCGTTAAATAGA+GGG + chr1_1:75864646-75864665 None:intergenic 40.0%
TAGAGTCCAGCGTTAAATAG+AGG + chr1_1:75864647-75864666 None:intergenic 40.0%
! CCGCAAAGTTTGAAGTGTAA+AGG + chr1_1:75864806-75864825 None:intergenic 40.0%
!!! ATCGCATCCTGTTTTTGACA+TGG - chr1_1:75864914-75864933 Msa0044330:CDS 40.0%
GAGTCATATTGGACGATCGT+TGG - chr1_1:75861931-75861950 Msa0044330:three_prime_UTR 45.0%
! TCCACAGGATGCTGTTGATT+TGG - chr1_1:75862033-75862052 Msa0044330:exon 45.0%
ACCAAATCAACAGCATCCTG+TGG + chr1_1:75862037-75862056 None:intergenic 45.0%
TGTAAAGAAAGCAGCTGTGG+AGG - chr1_1:75862072-75862091 Msa0044330:intron 45.0%
GCTGTGGAGGTAGAGTTAAA+TGG - chr1_1:75862085-75862104 Msa0044330:intron 45.0%
AAATGGCCATCATCTTGTGC+TGG - chr1_1:75862102-75862121 Msa0044330:intron 45.0%
GAGATCATAAGGCCCTTCAT+CGG + chr1_1:75862233-75862252 None:intergenic 45.0%
GCCTTATGATCTCTGCAATC+AGG - chr1_1:75862240-75862259 Msa0044330:intron 45.0%
TGCAATCAGGACAGCAGAAA+AGG - chr1_1:75862253-75862272 Msa0044330:intron 45.0%
! TGCACCGATGTACTTGAGAA+GGG + chr1_1:75862628-75862647 None:intergenic 45.0%
ATTCAACCTGGCAAAAGGAC+AGG + chr1_1:75862842-75862861 None:intergenic 45.0%
AATATGGAGCTTCTCCATCC+TGG - chr1_1:75863357-75863376 Msa0044330:CDS 45.0%
CATAGTCACTACTACTGGGA+CGG + chr1_1:75863395-75863414 None:intergenic 45.0%
!! TAGTGACTATGATAGTGGGG+TGG - chr1_1:75863404-75863423 Msa0044330:CDS 45.0%
AAGGTCTCTTCTGATGCTGA+AGG - chr1_1:75863510-75863529 Msa0044330:intron 45.0%
TTCGGTTCACTCCATTTGGA+TGG - chr1_1:75863684-75863703 Msa0044330:intron 45.0%
GTTCACTCCATTTGGATGGA+TGG - chr1_1:75863688-75863707 Msa0044330:intron 45.0%
GGATGGATGGTTTCATCTTC+TGG - chr1_1:75863701-75863720 Msa0044330:intron 45.0%
GGATGGTTTCATCTTCTGGT+TGG - chr1_1:75863705-75863724 Msa0044330:intron 45.0%
!! TTTGTGAGTGCCGTTCCTTT+TGG - chr1_1:75863789-75863808 Msa0044330:intron 45.0%
TCCACTCACATCCCAAAAGA+AGG + chr1_1:75863864-75863883 None:intergenic 45.0%
!!! GTGGCAAGATTTTAGGACCA+TGG + chr1_1:75863918-75863937 None:intergenic 45.0%
ATACCTCAGGGAATTCCAAC+TGG - chr1_1:75864200-75864219 Msa0044330:CDS 45.0%
CATAAACAAGGTTCCTGCAG+AGG - chr1_1:75864280-75864299 Msa0044330:CDS 45.0%
TACATACCCTGAAGTGCAGA+TGG + chr1_1:75864328-75864347 None:intergenic 45.0%
!!! CACGAGTCATCTTTTTTGCC+TGG + chr1_1:75864432-75864451 None:intergenic 45.0%
! ACCTGGTCTTCTTCAACACA+AGG - chr1_1:75864510-75864529 Msa0044330:CDS 45.0%
ACCTTGTGTTGAAGAAGACC+AGG + chr1_1:75864514-75864533 None:intergenic 45.0%
CTGCGGTTATTTATGCCTTG+AGG - chr1_1:75864574-75864593 Msa0044330:CDS 45.0%
TTTCCCCCTCTATTTAACGC+TGG - chr1_1:75864638-75864657 Msa0044330:CDS 45.0%
AGTCCAGCGTTAAATAGAGG+GGG + chr1_1:75864644-75864663 None:intergenic 45.0%
GAGTCCAGCGTTAAATAGAG+GGG + chr1_1:75864645-75864664 None:intergenic 45.0%
TTAACGCTGGACTCTAGTGA+AGG - chr1_1:75864651-75864670 Msa0044330:CDS 45.0%
TAACGCTGGACTCTAGTGAA+GGG - chr1_1:75864652-75864671 Msa0044330:CDS 45.0%
TGAAGGGTTTATCTGCTGTG+TGG - chr1_1:75864668-75864687 Msa0044330:CDS 45.0%
!! ATATTATAATAAGAAAAAAA+TGG + chr1_1:75863613-75863632 None:intergenic 5.0%
!!! TTTTTTTCTTATTATAATAT+TGG - chr1_1:75863613-75863632 Msa0044330:intron 5.0%
!! ACAACGGAAAGGCGTCTAAC+AGG - chr1_1:75861744-75861763 Msa0044330:three_prime_UTR 50.0%
TGGATGGAAGGACTTTCCAC+AGG - chr1_1:75862018-75862037 Msa0044330:three_prime_UTR 50.0%
TGGAGTAGGTGCATCCAAGT+TGG - chr1_1:75862336-75862355 Msa0044330:CDS 50.0%
GGAGTAGGTGCATCCAAGTT+GGG - chr1_1:75862337-75862356 Msa0044330:CDS 50.0%
GAGTAGGTGCATCCAAGTTG+GGG - chr1_1:75862338-75862357 Msa0044330:CDS 50.0%
! AGTAGGTGCATCCAAGTTGG+GGG - chr1_1:75862339-75862358 Msa0044330:CDS 50.0%
! TCCAAGTTGGGGGAGTGTAT+TGG - chr1_1:75862349-75862368 Msa0044330:CDS 50.0%
! CCAAGTTGGGGGAGTGTATT+GGG - chr1_1:75862350-75862369 Msa0044330:CDS 50.0%
! CAAGTTGGGGGAGTGTATTG+GGG - chr1_1:75862351-75862370 Msa0044330:CDS 50.0%
! GCACCGATGTACTTGAGAAG+GGG + chr1_1:75862627-75862646 None:intergenic 50.0%
! CTGCACCGATGTACTTGAGA+AGG + chr1_1:75862629-75862648 None:intergenic 50.0%
!! GCTTGGCTTGCTTCTTCCAA+AGG - chr1_1:75862721-75862740 Msa0044330:intron 50.0%
!!! GCCTTCTTTTGGGATGTGAG+TGG - chr1_1:75863860-75863879 Msa0044330:intron 50.0%
GGGGTTAATTCAGCTAGCCA+TGG - chr1_1:75863898-75863917 Msa0044330:intron 50.0%
ACTCTCGAAGACTCTGAACG+TGG + chr1_1:75863937-75863956 None:intergenic 50.0%
CGTTCAGAGTCTTCGAGAGT+AGG - chr1_1:75863937-75863956 Msa0044330:intron 50.0%
GAACCAGTTGGAATTCCCTG+AGG + chr1_1:75864206-75864225 None:intergenic 50.0%
CTGAAGCTTCAACATCCCCT+CGG - chr1_1:75864228-75864247 Msa0044330:CDS 50.0%
CGTAGAAAAAGGCAACCGAG+GGG + chr1_1:75864246-75864265 None:intergenic 50.0%
GCGTAGAAAAAGGCAACCGA+GGG + chr1_1:75864247-75864266 None:intergenic 50.0%
AGCGTAGAAAAAGGCAACCG+AGG + chr1_1:75864248-75864267 None:intergenic 50.0%
CTCTTGCGAGCTACATTACC+TGG - chr1_1:75864493-75864512 Msa0044330:CDS 50.0%
TTCTGCAAGGTCTTCTGCTG+CGG - chr1_1:75864557-75864576 Msa0044330:CDS 50.0%
CGGAAGCCCAGAACGTTTGA+TGG - chr1_1:75861982-75862001 Msa0044330:three_prime_UTR 55.0%
CCCAATACACTCCCCCAACT+TGG + chr1_1:75862353-75862372 None:intergenic 55.0%
TACATCGGTGCAGTCGCGAT+TGG - chr1_1:75862636-75862655 Msa0044330:intron 55.0%
! CTGCTACCTGTCCTTTTGCC+AGG - chr1_1:75862833-75862852 Msa0044330:intron 55.0%
GGTACTGTCTAGTGCCAGGA+TGG + chr1_1:75863374-75863393 None:intergenic 55.0%
GAAGCTTCAGGCGAACCAGT+TGG + chr1_1:75864218-75864237 None:intergenic 55.0%
CGAGGGGATGTTGAAGCTTC+AGG + chr1_1:75864230-75864249 None:intergenic 55.0%
GCTTTGCTGGATGTCCCTCT+CGG - chr1_1:75864358-75864377 Msa0044330:CDS 55.0%
GGACGGTACTGTCTAGTGCC+AGG + chr1_1:75863378-75863397 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75861734 75865083 75861734 ID=Msa0044330;Name=Msa0044330
chr1_1 mRNA 75861734 75865083 75861734 ID=Msa0044330-mRNA-1;Parent=Msa0044330;Name=Msa0044330-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.6|0.5|1|1|1|6|310|579
chr1_1 exon 75861734 75862085 75861734 ID=Msa0044330-mRNA-1:exon:25688;Parent=Msa0044330-mRNA-1
chr1_1 exon 75862286 75862384 75862286 ID=Msa0044330-mRNA-1:exon:25687;Parent=Msa0044330-mRNA-1
chr1_1 exon 75862477 75862608 75862477 ID=Msa0044330-mRNA-1:exon:25686;Parent=Msa0044330-mRNA-1
chr1_1 exon 75862854 75862957 75862854 ID=Msa0044330-mRNA-1:exon:25685;Parent=Msa0044330-mRNA-1
chr1_1 exon 75863286 75863527 75863286 ID=Msa0044330-mRNA-1:exon:25684;Parent=Msa0044330-mRNA-1
chr1_1 exon 75863963 75865083 75863963 ID=Msa0044330-mRNA-1:exon:25683;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75863963 75865083 75863963 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75863286 75863527 75863286 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75862854 75862957 75862854 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75862477 75862608 75862477 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75862286 75862384 75862286 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 CDS 75862044 75862085 75862044 ID=Msa0044330-mRNA-1:cds;Parent=Msa0044330-mRNA-1
chr1_1 three_prime_UTR 75861734 75862043 75861734 ID=Msa0044330-mRNA-1:three_prime_utr;Parent=Msa0044330-mRNA-1
Gene Sequence

>Msa0044330

ATGGAAGCAAACAACGGAAAGGCGTCTAACAGGAATGTGCTTAATCTGAAGCGGAAACATGCTTCTCGACATGTTACATGTTCAAATGAAACTCTGCGACCAGTATTACCTCAATGTACATCACTAATAACACCAAGAAACAAGGTTGTCAAACATATGAGATTGAAAGGGTACAAAAGCAAGCCAATGAAATCAGAGAGTCATATTGGACGATCGTTGGTTAGGTATTATATGAATTATAAGAAGAGCGGAAGCCCAGAACGTTTGATGGTCTATCAAAATGGTGGATGGAAGGACTTTCCACAGGATGCTGTTGATTTGGTTAGGAAAGATTTTGATGTAAAGAAAGCAGCTGTGGAGGTAGAGTTAAATGGCCATCATCTTGTGCTGGACTTTTTGCACATGTATCAGATGAATTTGAAATCTGGTTTGCAACAACCTATTGCTTGGATTGATGAGACAGGGTGCTGCTTTTTCCCTGAAATTTATGCTGCTTCCGATGAAGGGCCTTATGATCTCTGCAATCAGGACAGCAGAAAAGGTCATGAATCTTTGTTCCAAGGTCCTAATGAAATTAAATTACATTTAGGAGTTGAAATAAATGGAGTAGGTGCATCCAAGTTGGGGGAGTGTATTGGGGAGTCCAATGTCACCTTTAAGCATGTTCAAATTGATGCTAAACAAGCCTGCAATCATAATGATTTTGAAATTGAAGATAGCAGTAATAACATGGGAAATGGAAGTGTTGGCGAAGCCGTTGAGCAAAATAAAAGTATAGGTTTTAATGCATATAATGAAATTGTATATGGAAAGTTGGATTTGGATACTGTGCAAAAGATGTTTCTTAAGGGAACTGGTAGTTTTGGTAGTGCTGACATAGTTGAGATTTACCCCTTCTCAAGTACATCGGTGCAGTCGCGATTGGAGTTGTTCGAGAAGCAAGCTGAAATTACGAAAAATTGTCGGGGGGATGCTAATGTTCGATATGCTTGGCTTGCTTCTTCCAAAGGAGAGTTACCTACTATGATGAATTGTGGGCTTGGTCATTGTGTACCATCTGCATCTAAATGCATGCATGGCATTGGTGTTCATCTTGCAGCTGCTACCTGTCCTTTTGCCAGTGCTAGTTATTGCGATGTTGACGAAAATGGGGTTCGACACATCGTCTTTTGCCGTGTAATAATGGGGAATATGGAGCTTCTCCATCCTGGCACTAGACAGTACCGTCCCAGTAGTAGTGACTATGATAGTGGGGTGGATGACATCCACAATCCAAGAAACTTTTTAGTATGGAATATGAATATGAACACCCACATCTATCCAGAATTTGTTATTAGTTTCAAGGTCTCTTCTGATGCTGAAGGCCTTCTTTTGGGATGTGAGTGGAAGAATAATATTTTTGGGGTTAATTCAGCTAGCCATGGTCCTAAAATCTTGCCACGTTCAGAGTCTTCGAGAGTAGGCACTGGAATTCCAACTGGTTCGCCTGAAGCTTCAACATCCCCTCGGTTGCCTTTTTCTACGCTTTTTGCTGCTATCATAAACAAGGTTCCTGCAGAGGATATGAAACTTATCCATATGTACCATCTGCACTTCAGGGCAAAAAAGATGACTCGTGATGATTTTTTGAAAAAGTTGAGGTCAGTTGTGGGAGATGATCTCTTGCGAGCTACATTACCTGGTCTTCTTCAACACAAGATATTGTCCAAATCATCTTGTGTGATCAAAATGGAATCTTGA

Protein sequence

>Msa0044330

MEANNGKASNRNVLNLKRKHASRHVTCSNETLRPVLPQCTSLITPRNKVVKHMRLKGYKSKPMKSESHIGRSLVRYYMNYKKSGSPERLMVYQNGGWKDFPQDAVDLVRKDFDVKKAAVEVELNGHHLVLDFLHMYQMNLKSGLQQPIAWIDETGCCFFPEIYAASDEGPYDLCNQDSRKGHESLFQGPNEIKLHLGVEINGVGASKLGECIGESNVTFKHVQIDAKQACNHNDFEIEDSSNNMGNGSVGEAVEQNKSIGFNAYNEIVYGKLDLDTVQKMFLKGTGSFGSADIVEIYPFSSTSVQSRLELFEKQAEITKNCRGDANVRYAWLASSKGELPTMMNCGLGHCVPSASKCMHGIGVHLAAATCPFASASYCDVDENGVRHIVFCRVIMGNMELLHPGTRQYRPSSSDYDSGVDDIHNPRNFLVWNMNMNTHIYPEFVISFKVSSDAEGLLLGCEWKNNIFGVNSASHGPKILPRSESSRVGTGIPTGSPEASTSPRLPFSTLFAAIINKVPAEDMKLIHMYHLHFRAKKMTRDDFLKKLRSVVGDDLLRATLPGLLQHKILSKSSCVIKMES*